Query 023722
Match_columns 278
No_of_seqs 298 out of 1868
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:41:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 3.1E-22 1E-26 165.7 12.6 83 19-101 36-119 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-21 5.8E-26 150.3 11.1 80 20-99 17-97 (99)
3 2cqd_A RNA-binding region cont 99.9 5.4E-21 1.9E-25 150.5 13.8 89 13-101 8-96 (116)
4 3s8s_A Histone-lysine N-methyl 99.9 1.5E-21 5.2E-26 153.6 9.2 83 19-101 3-86 (110)
5 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-20 3.7E-25 153.2 13.0 86 16-101 36-122 (139)
6 2cpz_A CUG triplet repeat RNA- 99.8 1E-20 3.5E-25 148.7 11.8 87 15-101 18-105 (115)
7 2dgs_A DAZ-associated protein 99.8 1.9E-20 6.6E-25 143.2 13.0 85 16-101 4-89 (99)
8 1whw_A Hypothetical protein ri 99.8 2.3E-20 7.7E-25 142.6 12.9 84 18-101 4-88 (99)
9 2dgo_A Cytotoxic granule-assoc 99.8 6.6E-20 2.2E-24 143.9 14.9 89 15-103 8-97 (115)
10 1x5u_A Splicing factor 3B subu 99.8 2.9E-20 1E-24 143.5 12.6 87 15-101 8-95 (105)
11 3s7r_A Heterogeneous nuclear r 99.8 1.8E-20 6.1E-25 139.9 10.7 83 16-98 5-87 (87)
12 2dnz_A Probable RNA-binding pr 99.8 3.8E-20 1.3E-24 140.2 12.6 81 20-100 3-84 (95)
13 2lkz_A RNA-binding protein 5; 99.8 4.7E-21 1.6E-25 147.2 7.6 83 17-99 4-93 (95)
14 2cq0_A Eukaryotic translation 99.8 2.5E-20 8.4E-25 143.6 11.6 86 16-101 9-95 (103)
15 2dnm_A SRP46 splicing factor; 99.8 2.2E-20 7.5E-25 143.8 11.2 86 16-101 7-93 (103)
16 1x5s_A Cold-inducible RNA-bind 99.8 3.2E-20 1.1E-24 142.5 11.9 85 17-101 7-92 (102)
17 2lxi_A RNA-binding protein 10; 99.8 7E-21 2.4E-25 144.5 7.8 80 22-101 1-83 (91)
18 2cqg_A TDP-43, TAR DNA-binding 99.8 4.9E-20 1.7E-24 141.9 12.3 87 14-101 7-93 (103)
19 2dgp_A Bruno-like 4, RNA bindi 99.8 3.6E-20 1.2E-24 143.2 11.5 87 15-101 6-96 (106)
20 2khc_A Testis-specific RNP-typ 99.8 1.5E-20 5.2E-25 148.2 9.5 85 15-99 33-118 (118)
21 1x4h_A RNA-binding protein 28; 99.8 5.1E-20 1.8E-24 143.3 12.4 87 16-102 9-102 (111)
22 2rs2_A Musashi-1, RNA-binding 99.8 2.4E-20 8E-25 146.0 10.5 86 17-102 20-105 (109)
23 1x5t_A Splicing factor 3B subu 99.8 3.4E-20 1.2E-24 140.7 10.9 83 19-101 2-86 (96)
24 2cph_A RNA binding motif prote 99.8 5.1E-20 1.8E-24 142.4 12.0 87 15-101 8-97 (107)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.5E-20 8.4E-25 143.2 10.1 85 17-101 7-92 (102)
26 2dhg_A TRNA selenocysteine ass 99.8 5.3E-20 1.8E-24 141.8 11.7 86 17-103 4-92 (104)
27 2cpf_A RNA binding motif prote 99.8 5E-20 1.7E-24 140.5 11.0 83 19-101 2-88 (98)
28 2dng_A Eukaryotic translation 99.8 8.9E-20 3E-24 140.6 12.3 85 15-101 8-93 (103)
29 3ex7_B RNA-binding protein 8A; 99.8 5.8E-20 2E-24 146.5 11.3 88 15-102 15-103 (126)
30 2dh8_A DAZ-associated protein 99.8 3.7E-20 1.3E-24 143.0 9.9 86 15-101 9-95 (105)
31 1wi8_A EIF-4B, eukaryotic tran 99.8 9.3E-20 3.2E-24 140.7 11.7 85 15-101 8-94 (104)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.4E-20 2.5E-24 136.2 10.8 81 20-100 4-85 (87)
33 2cqc_A Arginine/serine-rich sp 99.8 7.1E-20 2.4E-24 138.5 10.9 86 15-100 8-94 (95)
34 2d9p_A Polyadenylate-binding p 99.8 8.8E-20 3E-24 140.4 11.6 86 14-101 7-93 (103)
35 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4.2E-24 140.0 12.2 86 16-102 9-98 (105)
36 2e5h_A Zinc finger CCHC-type a 99.8 6.2E-20 2.1E-24 138.7 10.3 85 15-99 9-94 (94)
37 2fy1_A RNA-binding motif prote 99.8 1.4E-19 4.6E-24 143.3 12.6 83 18-101 3-86 (116)
38 2cpe_A RNA-binding protein EWS 99.8 7.7E-20 2.6E-24 143.1 10.9 86 16-101 9-103 (113)
39 4f25_A Polyadenylate-binding p 99.8 6.6E-20 2.3E-24 144.7 10.5 80 21-102 4-84 (115)
40 2cqi_A Nucleolysin TIAR; RNA r 99.8 2E-19 6.8E-24 138.5 13.0 86 15-102 8-94 (103)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 8.3E-20 2.8E-24 135.4 10.4 81 19-99 4-85 (85)
42 3md1_A Nuclear and cytoplasmic 99.8 1.3E-19 4.3E-24 133.8 11.2 79 23-101 2-81 (83)
43 1p27_B RNA-binding protein 8A; 99.8 1.3E-19 4.5E-24 140.0 11.6 86 16-101 17-103 (106)
44 2do4_A Squamous cell carcinoma 99.8 1.2E-19 4.1E-24 138.9 10.9 85 16-101 11-96 (100)
45 3p5t_L Cleavage and polyadenyl 99.8 1.9E-20 6.5E-25 141.2 6.3 79 23-101 2-83 (90)
46 2m2b_A RNA-binding protein 10; 99.8 2.5E-20 8.5E-25 150.3 7.4 87 14-101 15-108 (131)
47 2ywk_A Putative RNA-binding pr 99.8 1.3E-19 4.4E-24 137.3 10.7 84 15-99 9-93 (95)
48 2cq3_A RNA-binding protein 9; 99.8 3.5E-19 1.2E-23 137.1 13.3 85 15-101 8-93 (103)
49 3q2s_C Cleavage and polyadenyl 99.8 2.6E-20 9E-25 164.4 7.8 81 21-101 67-150 (229)
50 1x4b_A Heterogeneous nuclear r 99.8 5E-20 1.7E-24 144.9 8.4 86 16-101 21-106 (116)
51 2do0_A HnRNP M, heterogeneous 99.8 6.4E-19 2.2E-23 137.9 14.6 85 16-101 9-94 (114)
52 2cq4_A RNA binding motif prote 99.8 1.9E-20 6.5E-25 146.9 5.8 86 17-103 20-106 (114)
53 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-19 5.9E-24 140.4 11.2 87 15-101 19-106 (110)
54 2div_A TRNA selenocysteine ass 99.8 2E-19 6.8E-24 137.3 11.0 83 18-100 5-93 (99)
55 2x1f_A MRNA 3'-END-processing 99.8 2.4E-19 8.3E-24 136.4 10.9 80 22-101 2-82 (96)
56 2la6_A RNA-binding protein FUS 99.8 2.6E-19 8.7E-24 137.0 11.0 84 16-99 7-99 (99)
57 2jrs_A RNA-binding protein 39; 99.8 2.4E-19 8.3E-24 140.1 11.0 88 14-101 18-106 (108)
58 3ns6_A Eukaryotic translation 99.8 6.6E-20 2.3E-24 141.2 7.6 83 19-101 3-93 (100)
59 1x4a_A Splicing factor, argini 99.8 5.2E-19 1.8E-23 137.6 12.5 84 14-100 14-98 (109)
60 2kxn_B Transformer-2 protein h 99.8 1.4E-19 4.7E-24 146.1 9.6 87 15-101 39-126 (129)
61 2dis_A Unnamed protein product 99.8 4.6E-19 1.6E-23 137.6 12.1 85 19-103 5-94 (109)
62 3ucg_A Polyadenylate-binding p 99.8 1.6E-19 5.4E-24 135.0 9.1 80 20-100 4-84 (89)
63 2cqp_A RNA-binding protein 12; 99.8 1.2E-19 4E-24 138.4 8.3 83 17-99 10-93 (98)
64 4a8x_A RNA-binding protein wit 99.8 2.5E-19 8.6E-24 133.4 9.7 81 20-100 2-84 (88)
65 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.9E-20 2.4E-24 133.3 6.4 76 23-98 1-76 (77)
66 3n9u_C Cleavage and polyadenyl 99.8 3.3E-19 1.1E-23 148.6 11.2 80 21-100 54-136 (156)
67 2ek1_A RNA-binding protein 12; 99.8 7.7E-20 2.6E-24 138.5 6.7 83 17-99 10-93 (95)
68 1p1t_A Cleavage stimulation fa 99.8 8.1E-20 2.8E-24 140.6 6.5 86 17-102 3-89 (104)
69 3ulh_A THO complex subunit 4; 99.8 5.9E-19 2E-23 136.6 11.4 83 16-99 23-106 (107)
70 2dgv_A HnRNP M, heterogeneous 99.8 7.2E-19 2.5E-23 132.3 11.4 82 17-100 3-85 (92)
71 2dgx_A KIAA0430 protein; RRM d 99.8 8.7E-19 3E-23 133.7 11.5 80 19-101 6-90 (96)
72 1sjq_A Polypyrimidine tract-bi 99.8 4.9E-19 1.7E-23 138.5 10.0 79 17-101 11-92 (105)
73 2kn4_A Immunoglobulin G-bindin 99.8 9.4E-19 3.2E-23 144.5 12.0 85 17-101 65-150 (158)
74 1wez_A HnRNP H', FTP-3, hetero 99.8 4.6E-19 1.6E-23 137.3 9.4 82 16-99 9-90 (102)
75 1x4e_A RNA binding motif, sing 99.8 1.1E-19 3.7E-24 135.1 5.4 79 20-98 3-82 (85)
76 1wg5_A Heterogeneous nuclear r 99.8 8.3E-19 2.8E-23 135.8 10.6 83 17-100 10-93 (104)
77 1s79_A Lupus LA protein; RRM, 99.8 4.7E-19 1.6E-23 137.8 9.1 82 18-100 7-88 (103)
78 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.3E-19 2.8E-23 141.6 10.8 83 16-98 57-140 (140)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.2E-19 7.4E-24 138.1 6.9 83 16-100 13-97 (100)
80 1iqt_A AUF1, heterogeneous nuc 99.8 1.8E-19 6E-24 130.6 6.1 75 24-98 1-75 (75)
81 2lea_A Serine/arginine-rich sp 99.8 3.3E-19 1.1E-23 144.9 8.2 86 16-101 41-127 (135)
82 2dgw_A Probable RNA-binding pr 99.8 1.4E-18 4.7E-23 130.8 11.0 81 17-100 5-86 (91)
83 2jwn_A Embryonic polyadenylate 99.8 1.1E-18 3.9E-23 138.6 11.1 80 20-100 34-114 (124)
84 2dgu_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 131.9 13.3 81 16-104 5-86 (103)
85 2mss_A Protein (musashi1); RNA 99.8 2.9E-19 9.8E-24 129.7 6.6 75 24-98 1-75 (75)
86 2kt5_A RNA and export factor-b 99.8 2.8E-18 9.7E-23 136.5 12.3 83 18-101 31-114 (124)
87 1x4c_A Splicing factor, argini 99.8 4.7E-18 1.6E-22 132.3 13.3 77 17-100 10-92 (108)
88 2cpy_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 139.9 7.2 84 18-102 11-95 (114)
89 2err_A Ataxin-2-binding protei 99.8 1.1E-18 3.7E-23 136.4 9.5 84 15-100 22-106 (109)
90 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.2E-18 7.4E-23 144.1 11.6 87 16-102 66-153 (165)
91 2cpi_A CCR4-NOT transcription 99.8 1.2E-18 4.1E-23 136.5 9.1 86 16-101 9-101 (111)
92 2fc8_A NCL protein; structure 99.8 2.1E-18 7.3E-23 132.3 10.3 82 16-100 9-91 (102)
93 2fc9_A NCL protein; structure 99.8 2.1E-18 7.3E-23 132.2 10.3 82 16-101 9-91 (101)
94 2dnq_A RNA-binding protein 4B; 99.8 5E-18 1.7E-22 127.6 12.1 76 18-101 4-80 (90)
95 2ki2_A SS-DNA binding protein 99.8 2.8E-19 9.7E-24 134.2 5.0 79 22-101 1-80 (90)
96 1x4d_A Matrin 3; structural ge 99.8 2.5E-18 8.6E-23 133.7 10.1 78 18-101 11-92 (102)
97 2cpx_A Hypothetical protein FL 99.8 8E-19 2.8E-23 137.5 7.0 85 17-101 20-105 (115)
98 2cq1_A PTB-like protein L; RRM 99.8 5.4E-18 1.9E-22 131.5 11.0 80 16-101 9-91 (101)
99 1wex_A Hypothetical protein (r 99.8 7.9E-18 2.7E-22 131.2 11.9 79 17-101 10-91 (104)
100 1x4g_A Nucleolysin TIAR; struc 99.8 7.6E-18 2.6E-22 131.1 11.9 78 18-101 21-99 (109)
101 1x5o_A RNA binding motif, sing 99.8 4.4E-18 1.5E-22 133.2 10.5 83 16-99 19-110 (114)
102 2lcw_A RNA-binding protein FUS 99.6 7E-20 2.4E-24 144.2 0.0 84 17-100 2-94 (116)
103 2hvz_A Splicing factor, argini 99.7 5.1E-18 1.8E-22 130.0 10.4 75 23-102 1-76 (101)
104 2jvo_A Nucleolar protein 3; nu 99.7 3.8E-18 1.3E-22 133.4 9.7 84 10-101 19-103 (108)
105 2db1_A Heterogeneous nuclear r 99.7 1.7E-18 5.9E-23 137.3 7.7 83 17-101 12-98 (118)
106 2hgm_A HNRPF protein, heteroge 99.7 1.6E-18 5.6E-23 139.8 7.7 82 17-100 37-120 (126)
107 2xs2_A Deleted in azoospermia- 99.7 1.5E-18 5.2E-23 133.2 7.2 84 17-102 4-87 (102)
108 2dgt_A RNA-binding protein 30; 99.7 1.2E-17 4.2E-22 125.9 12.0 78 16-101 4-82 (92)
109 3pgw_S U1-70K; protein-RNA com 99.7 1.2E-17 4.1E-22 160.4 15.0 84 19-102 99-183 (437)
110 2hgl_A HNRPF protein, heteroge 99.7 1.9E-18 6.5E-23 141.1 7.8 82 17-100 39-124 (136)
111 1fj7_A Nucleolin RBD1, protein 99.7 4.7E-19 1.6E-23 135.9 3.7 81 18-100 13-94 (101)
112 2la4_A Nuclear and cytoplasmic 99.7 2.7E-18 9.2E-23 131.6 7.8 79 16-100 21-100 (101)
113 2ad9_A Polypyrimidine tract-bi 99.7 7.5E-18 2.6E-22 134.6 10.7 79 18-102 27-108 (119)
114 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-17 3.6E-22 124.1 10.5 79 15-99 5-85 (85)
115 2dnp_A RNA-binding protein 14; 99.7 1.5E-17 5.1E-22 124.9 11.5 77 17-101 4-81 (90)
116 2nlw_A Eukaryotic translation 99.7 5.9E-18 2E-22 131.2 9.3 82 17-100 10-99 (105)
117 2dnn_A RNA-binding protein 12; 99.7 3.9E-18 1.3E-22 134.1 8.3 80 19-100 13-92 (109)
118 1wel_A RNA-binding protein 12; 99.7 1.4E-18 4.7E-23 138.6 5.5 83 18-101 21-104 (124)
119 2e5g_A U6 snRNA-specific termi 99.7 1.4E-17 4.8E-22 126.2 10.9 78 18-101 4-82 (94)
120 2hgn_A Heterogeneous nuclear r 99.7 8.8E-19 3E-23 143.6 4.1 81 17-100 41-122 (139)
121 1l3k_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 141.4 10.8 86 19-104 101-186 (196)
122 3r27_A HnRNP L, heterogeneous 99.7 1.5E-17 5.2E-22 128.9 10.8 79 17-101 16-97 (100)
123 2cqh_A IGF-II mRNA-binding pro 99.7 8.5E-18 2.9E-22 126.9 9.1 77 18-101 4-83 (93)
124 1why_A Hypothetical protein ri 99.7 1.7E-17 5.9E-22 126.3 10.9 77 18-100 13-92 (97)
125 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.8E-22 127.3 10.3 78 17-100 10-88 (99)
126 2jvr_A Nucleolar protein 3; RN 99.7 6.4E-18 2.2E-22 133.3 8.6 78 19-100 25-104 (111)
127 1l3k_A Heterogeneous nuclear r 99.7 1.6E-17 5.4E-22 140.2 11.3 86 16-101 7-92 (196)
128 2lmi_A GRSF-1, G-rich sequence 99.7 2.5E-18 8.7E-23 133.8 5.8 83 17-101 6-92 (107)
129 2krb_A Eukaryotic translation 99.7 3.8E-18 1.3E-22 125.9 6.5 72 22-95 1-80 (81)
130 4f02_A Polyadenylate-binding p 99.7 1.9E-17 6.6E-22 143.3 11.3 81 20-100 13-94 (213)
131 3beg_B Splicing factor, argini 99.7 9.6E-18 3.3E-22 132.3 8.5 75 18-99 12-92 (115)
132 2dha_A FLJ20171 protein; RRM d 99.7 4.5E-18 1.6E-22 136.5 6.7 81 19-100 20-104 (123)
133 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-17 4.3E-22 126.2 8.7 73 21-99 6-79 (89)
134 2e5j_A Methenyltetrahydrofolat 99.7 2.1E-17 7.2E-22 125.9 9.8 80 17-101 14-94 (97)
135 1x4f_A Matrin 3; structural ge 99.7 9.8E-18 3.4E-22 132.6 8.2 77 18-100 21-101 (112)
136 1wf1_A RNA-binding protein RAL 99.7 3E-17 1E-21 127.9 10.8 73 20-100 25-99 (110)
137 2a3j_A U1 small nuclear ribonu 99.7 3.3E-17 1.1E-21 132.2 11.0 82 17-101 24-110 (127)
138 2dnl_A Cytoplasmic polyadenyla 99.7 1E-17 3.6E-22 131.7 7.9 80 18-99 4-86 (114)
139 2kvi_A Nuclear polyadenylated 99.7 1.7E-17 5.7E-22 126.4 8.3 76 18-101 6-83 (96)
140 2cpd_A Apobec-1 stimulating pr 99.7 8.1E-17 2.8E-21 123.0 11.9 78 16-101 9-89 (99)
141 2f3j_A RNA and export factor b 99.7 3.2E-17 1.1E-21 139.2 10.6 83 18-101 84-167 (177)
142 1fjc_A Nucleolin RBD2, protein 99.7 1.9E-17 6.6E-22 125.5 7.9 79 17-100 11-90 (96)
143 2j8a_A Histone-lysine N-methyl 99.7 1.8E-17 6.1E-22 133.7 7.6 78 23-100 3-95 (136)
144 3lqv_A PRE-mRNA branch site pr 99.7 4.1E-17 1.4E-21 127.8 9.5 80 19-101 5-85 (115)
145 1nu4_A U1A RNA binding domain; 99.7 2.3E-17 7.8E-22 125.2 7.8 81 18-101 4-89 (97)
146 1x5p_A Negative elongation fac 99.7 1.4E-16 4.7E-21 121.4 12.1 77 17-101 10-87 (97)
147 1wf0_A TDP-43, TAR DNA-binding 99.7 1.4E-17 4.9E-22 124.5 6.4 76 20-101 3-78 (88)
148 2xnq_A Nuclear polyadenylated 99.7 9.6E-17 3.3E-21 122.8 11.0 77 16-100 16-94 (97)
149 1fxl_A Paraneoplastic encephal 99.7 9.4E-17 3.2E-21 131.5 11.6 80 22-101 2-82 (167)
150 2i2y_A Fusion protein consists 99.7 6.3E-17 2.2E-21 132.8 10.2 80 16-100 67-147 (150)
151 1b7f_A Protein (SXL-lethal pro 99.7 8.9E-17 3E-21 132.2 11.1 81 21-101 2-83 (168)
152 3d2w_A TAR DNA-binding protein 99.7 4.1E-17 1.4E-21 123.2 8.2 79 17-101 6-84 (89)
153 1whx_A Hypothetical protein ri 99.7 5.9E-17 2E-21 127.1 9.2 78 19-102 7-85 (111)
154 2qfj_A FBP-interacting repress 99.7 1.2E-16 4.1E-21 136.8 11.9 82 20-101 123-205 (216)
155 2e44_A Insulin-like growth fac 99.7 7.5E-17 2.6E-21 122.2 9.3 79 19-101 12-92 (96)
156 3md3_A Nuclear and cytoplasmic 99.7 1.7E-16 5.8E-21 129.8 12.1 83 17-99 82-165 (166)
157 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-16 7.1E-21 132.8 12.2 81 17-101 41-124 (164)
158 2yh0_A Splicing factor U2AF 65 99.7 1.8E-16 6.1E-21 133.9 11.8 84 18-101 110-194 (198)
159 1wg1_A KIAA1579 protein, homol 99.7 7.6E-17 2.6E-21 120.8 7.7 74 20-100 3-77 (88)
160 2g4b_A Splicing factor U2AF 65 99.7 2.1E-16 7.2E-21 130.6 10.9 79 20-98 92-171 (172)
161 3egn_A RNA-binding protein 40; 99.7 1.8E-17 6.2E-22 135.0 4.2 86 18-103 41-132 (143)
162 2cjk_A Nuclear polyadenylated 99.7 1.3E-16 4.5E-21 131.2 8.6 79 21-100 2-80 (167)
163 2cq2_A Hypothetical protein LO 99.7 3.5E-16 1.2E-20 124.0 10.0 77 18-100 21-105 (114)
164 2qfj_A FBP-interacting repress 99.7 2.7E-16 9.1E-21 134.6 9.9 83 19-101 25-108 (216)
165 4f02_A Polyadenylate-binding p 99.7 1.7E-16 5.8E-21 137.4 8.6 80 21-102 102-182 (213)
166 2voo_A Lupus LA protein; RNA-b 99.7 4.1E-16 1.4E-20 134.0 10.7 80 21-101 108-187 (193)
167 2cjk_A Nuclear polyadenylated 99.7 1.4E-16 4.7E-21 131.1 7.2 79 21-100 86-165 (167)
168 2hzc_A Splicing factor U2AF 65 99.6 5E-16 1.7E-20 115.3 9.1 72 19-97 3-86 (87)
169 3md3_A Nuclear and cytoplasmic 99.6 6.6E-16 2.2E-20 126.3 10.4 78 23-101 1-79 (166)
170 1b7f_A Protein (SXL-lethal pro 99.6 1E-15 3.5E-20 125.7 11.3 81 18-98 85-168 (168)
171 3zzy_A Polypyrimidine tract-bi 99.6 1.8E-15 6E-20 122.6 11.8 82 15-101 21-106 (130)
172 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.9E-20 126.1 10.4 80 21-100 2-87 (175)
173 1fxl_A Paraneoplastic encephal 99.6 1.8E-15 6E-20 123.8 10.8 80 19-98 85-167 (167)
174 2bz2_A Negative elongation fac 99.6 1.2E-15 4.2E-20 121.6 9.1 77 17-101 34-111 (121)
175 2e5i_A Heterogeneous nuclear r 99.6 5.9E-15 2E-19 118.6 12.6 77 19-101 22-102 (124)
176 3nmr_A Cugbp ELAV-like family 99.6 2.8E-15 9.6E-20 123.7 10.7 80 18-98 91-174 (175)
177 3pgw_A U1-A; protein-RNA compl 99.6 3E-15 1E-19 133.9 11.3 82 18-102 5-91 (282)
178 3tyt_A Heterogeneous nuclear r 99.6 3E-15 1E-19 129.7 10.7 76 21-101 3-80 (205)
179 2pe8_A Splicing factor 45; RRM 99.6 8E-15 2.7E-19 114.3 10.8 81 20-100 6-93 (105)
180 2diu_A KIAA0430 protein; struc 99.6 1.3E-14 4.4E-19 110.9 10.9 69 23-101 10-84 (96)
181 1fje_B Nucleolin RBD12, protei 99.6 6.5E-15 2.2E-19 122.2 9.6 79 17-100 94-173 (175)
182 3u1l_A PRE-mRNA-splicing facto 99.6 7.1E-15 2.4E-19 130.6 9.1 77 19-101 131-229 (240)
183 2adc_A Polypyrimidine tract-bi 99.6 1.6E-14 5.4E-19 126.3 11.0 78 19-101 31-110 (229)
184 3smz_A Protein raver-1, ribonu 99.6 2.6E-14 8.7E-19 128.0 12.4 81 21-101 94-175 (284)
185 3pgw_A U1-A; protein-RNA compl 99.5 2.6E-14 8.9E-19 127.8 11.5 77 18-99 203-281 (282)
186 2ghp_A U4/U6 snRNA-associated 99.5 1.2E-14 4.2E-19 130.6 9.1 82 18-100 206-290 (292)
187 3smz_A Protein raver-1, ribonu 99.5 1.7E-14 5.7E-19 129.2 9.8 85 18-103 180-266 (284)
188 1fje_B Nucleolin RBD12, protei 99.5 2.7E-15 9.3E-20 124.5 4.1 83 17-101 8-91 (175)
189 2dit_A HIV TAT specific factor 99.5 6.8E-14 2.3E-18 109.5 11.8 82 16-101 9-102 (112)
190 1qm9_A Polypyrimidine tract-bi 99.5 2.1E-14 7.2E-19 121.8 8.4 76 21-101 2-79 (198)
191 1jmt_A Splicing factor U2AF 35 99.5 2.4E-14 8.3E-19 111.2 5.3 71 27-98 20-103 (104)
192 3v4m_A Splicing factor U2AF 65 99.5 1.2E-13 4E-18 107.5 9.2 81 20-100 3-96 (105)
193 3sde_A Paraspeckle component 1 99.5 7.8E-14 2.7E-18 124.3 9.2 77 17-99 17-94 (261)
194 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.9E-13 2E-17 102.9 12.9 77 19-101 7-90 (100)
195 3tyt_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 122.1 7.5 76 21-98 122-204 (205)
196 3sde_A Paraspeckle component 1 99.5 1.2E-13 4.1E-18 123.0 9.9 80 21-101 95-179 (261)
197 2ghp_A U4/U6 snRNA-associated 99.5 9.4E-14 3.2E-18 124.8 9.0 80 21-101 116-197 (292)
198 2g4b_A Splicing factor U2AF 65 99.5 2E-13 6.7E-18 112.6 10.1 73 21-100 3-87 (172)
199 2adc_A Polypyrimidine tract-bi 99.5 2.1E-13 7.3E-18 119.0 10.3 76 20-100 149-227 (229)
200 1qm9_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 116.7 8.7 76 20-100 118-196 (198)
201 2yh0_A Splicing factor U2AF 65 99.4 4.1E-13 1.4E-17 113.1 9.6 74 21-101 3-88 (198)
202 3ue2_A Poly(U)-binding-splicin 99.4 5.1E-13 1.7E-17 106.3 8.7 80 21-100 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.3 3.8E-12 1.3E-16 118.6 9.2 76 17-98 13-96 (345)
204 3s6e_A RNA-binding protein 39; 99.2 3E-11 1E-15 95.4 6.8 76 21-100 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 3.6E-10 1.2E-14 90.1 9.0 80 15-100 11-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 9.1E-10 3.1E-14 83.3 7.9 72 21-101 6-86 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 5.4E-09 1.8E-13 90.5 8.4 67 33-99 140-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 2.8E-09 9.7E-14 81.0 5.6 72 20-100 13-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.3 2.3E-06 7.8E-11 66.6 8.7 74 19-98 18-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.2 1.4E-05 4.7E-10 61.5 10.7 73 18-98 4-81 (104)
211 1wey_A Calcipressin 1; structu 97.4 0.00057 2E-08 52.5 8.3 75 20-100 3-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.3 0.00056 1.9E-08 52.0 6.5 55 21-84 15-69 (100)
213 1wwh_A Nucleoporin 35, nucleop 97.2 0.0018 6E-08 51.0 8.8 74 18-98 20-94 (119)
214 1uw4_A UPF3X; nonsense mediate 96.9 0.0034 1.2E-07 47.1 7.8 63 23-85 2-66 (91)
215 3ctr_A Poly(A)-specific ribonu 96.8 0.0017 5.7E-08 49.5 5.0 53 23-84 7-59 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.1 0.0026 9E-08 61.1 3.0 57 22-84 53-109 (464)
217 3p3d_A Nucleoporin 53; structu 95.7 0.012 4.2E-07 47.0 5.0 77 22-99 7-97 (132)
218 2kn4_A Immunoglobulin G-bindin 95.5 0.01 3.5E-07 47.7 3.9 33 51-85 2-34 (158)
219 2l08_A Regulator of nonsense t 94.7 0.03 1E-06 42.4 4.0 65 21-85 8-74 (97)
220 2i2y_A Fusion protein consists 93.0 0.064 2.2E-06 42.6 3.4 39 61-100 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 88.9 0.82 2.8E-05 44.2 7.2 56 21-85 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 79.2 4.4 0.00015 28.1 5.7 66 24-98 2-74 (76)
223 4f25_A Polyadenylate-binding p 61.6 1.7 5.7E-05 32.7 0.0 20 19-38 94-113 (115)
224 3fry_A Probable copper-exporti 54.4 36 0.0012 22.5 6.0 58 21-85 5-62 (73)
225 3lpe_A Putative transcription 50.7 39 0.0013 24.5 6.0 47 35-86 21-72 (92)
226 2cu1_A Mitogen-activated prote 48.8 42 0.0014 25.1 5.8 62 30-99 24-86 (103)
227 3h7h_B Transcription elongatio 41.6 42 0.0014 25.2 5.0 35 48-87 40-74 (106)
228 3j21_T 50S ribosomal protein L 40.4 70 0.0024 23.1 5.9 54 27-83 27-82 (86)
229 4eyt_A Telomerase associated p 39.3 1.1E+02 0.0039 22.5 9.0 72 19-98 9-88 (129)
230 2lfv_A Protein DAMX; cell divi 45.4 6.3 0.00022 29.9 0.0 56 32-89 32-89 (106)
231 2qyc_A Ferredoxin-like protein 38.7 1.1E+02 0.0037 22.1 6.9 56 23-79 6-71 (103)
232 3bgu_A Ferredoxin-like protein 34.8 1.1E+02 0.0039 22.7 6.6 63 18-81 18-90 (116)
233 3bb5_A Stress responsive alpha 34.4 1.5E+02 0.005 22.3 7.8 62 20-81 19-91 (121)
234 2i9x_A Putative septation prot 34.3 47 0.0016 24.1 4.1 26 48-73 5-30 (87)
235 4e8u_A Putative uncharacterize 31.1 1.2E+02 0.0041 24.8 6.5 48 34-84 33-83 (172)
236 2ia9_A Putative septation prot 29.2 62 0.0021 24.1 4.1 26 48-73 5-30 (100)
237 1q4r_A Protein AT3G17210; cent 29.1 1.7E+02 0.0058 21.4 6.8 61 22-82 11-82 (112)
238 1vq8_S 50S ribosomal protein L 28.3 94 0.0032 22.3 4.8 49 26-77 25-75 (85)
239 2i9z_A Putative septation prot 27.9 68 0.0023 24.2 4.1 26 48-73 5-30 (105)
240 2exu_A Transcription initiatio 26.9 84 0.0029 26.3 5.0 26 63-88 148-173 (200)
241 3swz_A Steroid 17-alpha-hydrox 24.9 74 0.0025 29.0 4.7 58 25-91 17-78 (494)
242 1tr0_A Stable protein 1; plant 24.0 2E+02 0.007 20.7 6.3 58 22-79 9-79 (108)
243 4a4j_A Pacszia, cation-transpo 23.5 1.4E+02 0.0049 18.7 5.0 57 23-85 4-63 (69)
244 2npt_B Mitogen-activated prote 23.2 2.3E+02 0.0077 21.0 6.0 60 30-97 36-96 (100)
245 3dxs_X Copper-transporting ATP 23.2 1.5E+02 0.0052 18.9 7.0 57 23-85 4-64 (74)
246 1q8l_A Copper-transporting ATP 22.9 1.7E+02 0.0058 19.3 8.5 60 20-85 8-71 (84)
247 3mfb_A Uncharacterized protein 22.5 1.1E+02 0.0039 24.6 4.7 36 34-69 3-41 (157)
248 3bde_A MLL5499 protein; stress 22.4 2.5E+02 0.0084 21.0 6.7 58 22-79 21-86 (120)
249 4bby_A Alkyldihydroxyacetoneph 22.1 70 0.0024 31.5 4.1 54 30-84 351-408 (658)
250 2jrh_A Mitogen-activated prote 21.5 2.4E+02 0.0083 20.6 5.8 62 30-99 20-82 (94)
251 1kvi_A Copper-transporting ATP 20.4 1.8E+02 0.0061 18.6 8.0 60 20-85 7-70 (79)
252 3ts2_A Protein LIN-28 homolog 20.4 15 0.0005 29.4 -1.0 28 37-72 2-29 (148)
253 4a17_R RPL23A, 60S ribosomal p 20.2 1.6E+02 0.0055 23.5 5.1 50 29-81 93-144 (150)
254 3u5e_X 60S ribosomal protein L 20.0 1.7E+02 0.0058 23.2 5.2 52 27-81 83-136 (142)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=3.1e-22 Score=165.73 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=78.2
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
..+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999987 679999999999
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
++..
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9654
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=150.34 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=75.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999999997 6799999999998
Q ss_pred c
Q 023722 99 C 99 (278)
Q Consensus 99 ~ 99 (278)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 3
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.4e-21 Score=150.50 Aligned_cols=89 Identities=58% Similarity=0.983 Sum_probs=83.2
Q ss_pred cCCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeE
Q 023722 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (278)
Q Consensus 13 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~ 92 (278)
...+..+.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|++
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|+++...
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999999643
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=153.57 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=78.3
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
+...++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.+| .+|+|++|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999997 669999999999
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9644
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=153.20 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=79.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
..++...++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999999997 569999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999643
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1e-20 Score=148.73 Aligned_cols=87 Identities=26% Similarity=0.334 Sum_probs=80.6
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566677999999999999999999999999999999999999999999999999999999999999987 67999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 99999654
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=143.16 Aligned_cols=85 Identities=27% Similarity=0.519 Sum_probs=78.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+ ++ .+|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3456788999999999999999999999999999999999999999999999999999999999999 65 779999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999654
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=142.63 Aligned_cols=84 Identities=31% Similarity=0.519 Sum_probs=78.8
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
+..+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999997 56999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++.+
T Consensus 84 ~a~~~ 88 (99)
T 1whw_A 84 PSTIK 88 (99)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99654
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=6.6e-20 Score=143.91 Aligned_cols=89 Identities=35% Similarity=0.469 Sum_probs=81.9
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+.+..+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44566788999999999999999999999999999999999999999999999999999999999999987 66999999
Q ss_pred EEEEcccCCC
Q 023722 94 NCNLACLGVQ 103 (278)
Q Consensus 94 ~V~~a~~~~~ 103 (278)
+|++++.+..
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999975533
No 10
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=143.47 Aligned_cols=87 Identities=26% Similarity=0.331 Sum_probs=80.7
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
...++...++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999987 67999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99999643
No 11
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=1.8e-20 Score=139.91 Aligned_cols=83 Identities=34% Similarity=0.701 Sum_probs=77.0
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V 95 (278)
+..+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++++|+|++|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999988777899999999
Q ss_pred EEc
Q 023722 96 NLA 98 (278)
Q Consensus 96 ~~a 98 (278)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=140.19 Aligned_cols=81 Identities=32% Similarity=0.562 Sum_probs=76.7
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999999987 6799999999999
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 13
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-21 Score=147.21 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=76.4
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCC--EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-----ccC
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE--ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-----VID 89 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~--I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-----~i~ 89 (278)
-.+....+|||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.++. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 35667899999999999999999999999995 67999999999999999999999999999999999863 499
Q ss_pred CeEEEEEEcc
Q 023722 90 GRRANCNLAC 99 (278)
Q Consensus 90 Gr~i~V~~a~ 99 (278)
||+|+|++|+
T Consensus 84 Gr~i~V~~Ak 93 (95)
T 2lkz_A 84 GKTIGVDFAK 93 (95)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEEcc
Confidence 9999999985
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=143.59 Aligned_cols=86 Identities=26% Similarity=0.358 Sum_probs=80.4
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
..+..+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4567788999999999999999999999999999999999999999999999999999999999999997 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999643
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=143.85 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=80.0
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
+.+..+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999999987 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++..
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 9999643
No 16
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=142.51 Aligned_cols=85 Identities=35% Similarity=0.627 Sum_probs=79.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
....+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999987 6799999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++..
T Consensus 87 ~~a~~~ 92 (102)
T 1x5s_A 87 DQAGKS 92 (102)
T ss_dssp EEEECC
T ss_pred EECCCC
Confidence 999654
No 17
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=7e-21 Score=144.46 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=74.6
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C-ccCCeEEEEEEc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P-VIDGRRANCNLA 98 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~-~i~Gr~i~V~~a 98 (278)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.++ . +|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999999874 3 599999999999
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 18
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=141.90 Aligned_cols=87 Identities=36% Similarity=0.625 Sum_probs=79.8
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEE
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i 93 (278)
.....+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+. .++|+|++|
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l 85 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWC 85 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEE
Confidence 3455677889999999999999999999999999999999999999999999999999999999999995 467999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|+++..+
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cqg_A 86 DCKLPNSK 93 (103)
T ss_dssp EEECCCTT
T ss_pred EEEecCCC
Confidence 99999654
No 19
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.6e-20 Score=143.20 Aligned_cols=87 Identities=29% Similarity=0.430 Sum_probs=80.0
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc---CC
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI---DG 90 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i---~G 90 (278)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ ..+ ++
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 34567788999999999999999999999999999999999999999999999999999999999999997 456 88
Q ss_pred eEEEEEEcccC
Q 023722 91 RRANCNLACLG 101 (278)
Q Consensus 91 r~i~V~~a~~~ 101 (278)
++|+|++++.+
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999999653
No 20
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.5e-20 Score=148.18 Aligned_cols=85 Identities=27% Similarity=0.377 Sum_probs=78.8
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+.++.+.++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566778999999999999999999999999999999999999999999999999999999999999997 66999999
Q ss_pred EEEEcc
Q 023722 94 NCNLAC 99 (278)
Q Consensus 94 ~V~~a~ 99 (278)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999873
No 21
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=143.32 Aligned_cols=87 Identities=29% Similarity=0.425 Sum_probs=80.1
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC------C-cc
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA------P-VI 88 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~------~-~i 88 (278)
+....+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ . .|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999999986 4 59
Q ss_pred CCeEEEEEEcccCC
Q 023722 89 DGRRANCNLACLGV 102 (278)
Q Consensus 89 ~Gr~i~V~~a~~~~ 102 (278)
+|++|+|+++..+.
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999996543
No 22
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=2.4e-20 Score=146.03 Aligned_cols=86 Identities=34% Similarity=0.620 Sum_probs=76.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
..+.+.++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++.+|+|+.|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred EcccCC
Q 023722 97 LACLGV 102 (278)
Q Consensus 97 ~a~~~~ 102 (278)
++..+.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 996543
No 23
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=140.68 Aligned_cols=83 Identities=27% Similarity=0.419 Sum_probs=77.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
....++|||+|||+++++++|+++|++||+|++| +|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3467999999999999999999999999999999 999999999999999999999999999999987 66999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
++..+
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 99543
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=142.41 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=80.6
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHhc-C-CccCCe
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGR 91 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~d-k~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~Gr 91 (278)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+|+++ +.+++++|||||+|.+.++|++||+.+ + .+|+|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3456778899999999999999999999999999999999999 789999999999999999999999998 6 679999
Q ss_pred EEEEEEcccC
Q 023722 92 RANCNLACLG 101 (278)
Q Consensus 92 ~i~V~~a~~~ 101 (278)
+|+|++++.+
T Consensus 88 ~l~v~~a~~~ 97 (107)
T 2cph_A 88 RLVLEWADSE 97 (107)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 9999999654
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=143.17 Aligned_cols=85 Identities=31% Similarity=0.382 Sum_probs=78.9
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
....+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999987 5699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++..
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999654
No 26
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=141.79 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=78.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc-cCCeEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV-IDGRRA 93 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~-fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~Gr~i 93 (278)
.+....++|||+|||+++++++|+++|++ ||+|++|+|++|+ +++++|||||+|.+.++|++||+.++ .. |+|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567799999999999999999999999 9999999999998 99999999999999999999999997 67 999999
Q ss_pred EEEEcccCCC
Q 023722 94 NCNLACLGVQ 103 (278)
Q Consensus 94 ~V~~a~~~~~ 103 (278)
+|+++..+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999965433
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=140.45 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=76.7
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCC---CCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~---tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
..+.++|||+|||+++++++|+++|++||+|++|+|++++. |++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35678999999999999999999999999999999999887 66999999999999999999999987 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999654
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=8.9e-20 Score=140.57 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=78.2
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+..+.+.++|||+|||+++++++|+++|++|| |++|+|++|+.+++++|||||+|.+.++|++|| .++ .+|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 455667889999999999999999999999996 999999999999999999999999999999999 776 67999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dng_A 86 RVDIAEGR 93 (103)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999643
No 29
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=5.8e-20 Score=146.49 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=81.0
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+....+.++|||+|||+++++++|+++|++||+|++|.|+.|+.+++++|||||+|.+.++|++||+.++ .+|+|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34566678999999999999999999999999999999999999999999999999999999999999987 67999999
Q ss_pred EEEEcccCC
Q 023722 94 NCNLACLGV 102 (278)
Q Consensus 94 ~V~~a~~~~ 102 (278)
+|+++..+.
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999997543
No 30
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=143.04 Aligned_cols=86 Identities=35% Similarity=0.728 Sum_probs=79.9
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
...++.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. + .+|+|++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 345678889999999999999999999999999999999999999999999999999999999999999 6 66999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|+++..+
T Consensus 88 ~V~~a~~~ 95 (105)
T 2dh8_A 88 DPKPCTPR 95 (105)
T ss_dssp BCCCSCCS
T ss_pred EEEEccCC
Confidence 99998644
No 31
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=140.71 Aligned_cols=85 Identities=16% Similarity=0.420 Sum_probs=78.0
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t-g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.+..+...++|||+|||+++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++|| .++ .+|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 345667789999999999999999999999999 999999999988 999999999999999999999 776 6799999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|++++.+
T Consensus 86 l~V~~a~~~ 94 (104)
T 1wi8_A 86 IRVDVADQA 94 (104)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999643
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=7.4e-20 Score=136.23 Aligned_cols=81 Identities=37% Similarity=0.515 Sum_probs=75.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999999987 6799999999999
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 33
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=138.49 Aligned_cols=86 Identities=24% Similarity=0.369 Sum_probs=79.6
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
........++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999987 56999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999853
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-20 Score=140.44 Aligned_cols=86 Identities=30% Similarity=0.473 Sum_probs=79.2
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.....+.+.++|||+|||+++++++|+++|++||+|++|+|+.+ +++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34556778999999999999999999999999999999999998 79999999999999999999999987 6799999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|++++.+
T Consensus 85 l~V~~a~~~ 93 (103)
T 2d9p_A 85 LYVALAQRK 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEEeccc
Confidence 999999654
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.2e-19 Score=139.99 Aligned_cols=86 Identities=26% Similarity=0.281 Sum_probs=77.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCC---e
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG---R 91 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G---r 91 (278)
...+...++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.++ ..|.+ +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3344568999999999999999999999999999999999998 79999999999999999999999997 56887 9
Q ss_pred EEEEEEcccCC
Q 023722 92 RANCNLACLGV 102 (278)
Q Consensus 92 ~i~V~~a~~~~ 102 (278)
.|+|++++.+.
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999996543
No 36
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=138.72 Aligned_cols=85 Identities=20% Similarity=0.393 Sum_probs=78.7
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
....+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999997 56999999
Q ss_pred EEEEcc
Q 023722 94 NCNLAC 99 (278)
Q Consensus 94 ~V~~a~ 99 (278)
+|++++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999973
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=143.30 Aligned_cols=83 Identities=30% Similarity=0.536 Sum_probs=77.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
++.+.++|||+|||+++++++|+++|++||+|++|+|+.|+ +++++|||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999998 89999999999999999999999997 67999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++..
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99643
No 38
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=143.07 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=79.9
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~--------~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 86 (278)
+.++.+.++|||+|||+++++++|+++|++||+|+ +|+|+.|+.+++++|||||+|.+.++|++||+.++ .
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45677889999999999999999999999999999 69999999999999999999999999999999987 6
Q ss_pred ccCCeEEEEEEcccC
Q 023722 87 VIDGRRANCNLACLG 101 (278)
Q Consensus 87 ~i~Gr~i~V~~a~~~ 101 (278)
+|+|++|+|++++.+
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 799999999999543
No 39
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=6.6e-20 Score=144.68 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=72.8
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+|||++++|++|+++|++||+|++|+|++|+ +++||||||+|.+.++|++||+.++ .+|+|++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999986 4589999999999999999999987 67999999999986
Q ss_pred cCC
Q 023722 100 LGV 102 (278)
Q Consensus 100 ~~~ 102 (278)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=138.46 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=77.3
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
....+...++|||+|||+++++++|+++|++||+|++|+|++|+.+ +||||||+|.+.++|++||+.++ ..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456678899999999999999999999999999999999998644 68999999999999999999987 56999999
Q ss_pred EEEEcccCC
Q 023722 94 NCNLACLGV 102 (278)
Q Consensus 94 ~V~~a~~~~ 102 (278)
+|++++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999996543
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=8.3e-20 Score=135.37 Aligned_cols=81 Identities=32% Similarity=0.461 Sum_probs=76.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4577999999999999999999999999999999999999999999999999999999999999987 679999999998
Q ss_pred cc
Q 023722 98 AC 99 (278)
Q Consensus 98 a~ 99 (278)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.3e-19 Score=133.77 Aligned_cols=79 Identities=33% Similarity=0.495 Sum_probs=75.1
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~~ 101 (278)
++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|++++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999999999999999999999999999987 6799999999999643
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=140.00 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=79.7
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
+....+.++|||+|||+++++++|+++|++||+|++|.|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 4455677999999999999999999999999999999999999999999999999999999999999987 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|+++..+
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999654
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=138.94 Aligned_cols=85 Identities=20% Similarity=0.394 Sum_probs=78.4
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+.+.++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455678999999999999999999999999999999999998 89999999999999999999999987 569999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++++
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999543
No 45
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.9e-20 Score=141.21 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=71.1
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
.+|||+||+++++|++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999997 67999999999986
Q ss_pred cC
Q 023722 100 LG 101 (278)
Q Consensus 100 ~~ 101 (278)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 46
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-20 Score=150.27 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=80.1
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C----
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P---- 86 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~---- 86 (278)
..+..+...++|||+||+++++|++|+++|++||+|+. |+|++|+.|+++||||||+|.+. +|++||+.++ .
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 44566778899999999999999999999999999977 99999999999999999999999 9999999997 6
Q ss_pred ccCCeEEEEEEcccC
Q 023722 87 VIDGRRANCNLACLG 101 (278)
Q Consensus 87 ~i~Gr~i~V~~a~~~ 101 (278)
+|+||+|+|++++..
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 899999999999653
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=137.26 Aligned_cols=84 Identities=26% Similarity=0.393 Sum_probs=76.5
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+..+...++|||+|||+++++++|+++|++||+|++|+|++|+. ++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345667889999999999999999999999999999999999986 9999999999999999999999987 67999999
Q ss_pred EEEEcc
Q 023722 94 NCNLAC 99 (278)
Q Consensus 94 ~V~~a~ 99 (278)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999985
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=137.10 Aligned_cols=85 Identities=28% Similarity=0.492 Sum_probs=77.4
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
....+.+.++|||+|||+++++++|+++|++||+|++|+|++++. .++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445677889999999999999999999999999999999999864 389999999999999999999987 67999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 86 ~v~~a~~~ 93 (103)
T 2cq3_A 86 EVNNATAR 93 (103)
T ss_dssp EEEECCSS
T ss_pred EEEEcccC
Confidence 99999654
No 49
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=2.6e-20 Score=164.42 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=75.5
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
..++|||+||++++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.++ ++|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999997 679999999999
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-20 Score=144.93 Aligned_cols=86 Identities=35% Similarity=0.633 Sum_probs=78.3
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V 95 (278)
+..+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+..+.+|+|++|+|
T Consensus 21 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V 100 (116)
T 1x4b_A 21 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEP 100 (116)
T ss_dssp CCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEE
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEE
Confidence 33455679999999999999999999999999999999999999999999999999999999999999336799999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
+++..+
T Consensus 101 ~~a~~~ 106 (116)
T 1x4b_A 101 KRAVAR 106 (116)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 999654
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.4e-19 Score=137.88 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=77.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
.......++|||+||++++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3455678999999999999999999999999999999999998 59999999999999999999999987 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++..
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9998643
No 52
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=146.92 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+.+.++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++|| .++ ..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 44567789999999999999999999999999999999999999999999999999999999999 776 6699999999
Q ss_pred EEcccCCC
Q 023722 96 NLACLGVQ 103 (278)
Q Consensus 96 ~~a~~~~~ 103 (278)
++++.+..
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99975433
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.7e-19 Score=140.41 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=80.5
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.+....+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34556678999999999999999999999999999999999999999999999999999999999999987 66999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|+++..+
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 99999654
No 54
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=137.34 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=77.5
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEE-EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE---
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR--- 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~-~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~--- 92 (278)
.....++|||+|||++++|++|+++|++||+|+ +|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999999999999999999999999 99999999999999999999999999999999987 6699999
Q ss_pred -EEEEEccc
Q 023722 93 -ANCNLACL 100 (278)
Q Consensus 93 -i~V~~a~~ 100 (278)
|+|++++.
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99999853
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.4e-19 Score=136.41 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=76.0
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~ 100 (278)
.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5899999999999999999999999999999999999999999999999999999999999987 669999999999965
Q ss_pred C
Q 023722 101 G 101 (278)
Q Consensus 101 ~ 101 (278)
+
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=137.02 Aligned_cols=84 Identities=27% Similarity=0.398 Sum_probs=78.3
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--------v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 86 (278)
+......++|||+||++++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+.++ .
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445667899999999999999999999999999999 9999999999999999999999999999999987 6
Q ss_pred ccCCeEEEEEEcc
Q 023722 87 VIDGRRANCNLAC 99 (278)
Q Consensus 87 ~i~Gr~i~V~~a~ 99 (278)
+|+|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 7999999999873
No 57
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=140.10 Aligned_cols=88 Identities=32% Similarity=0.502 Sum_probs=81.2
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
..+..+...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345667788999999999999999999999999999999999999999999999999999999999999987 6699999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|++++.+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998543
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=6.6e-20 Score=141.20 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=77.5
Q ss_pred CCCccEEEECCCCC------CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCC-
Q 023722 19 DTTYTKVFVGGLAW------ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG- 90 (278)
Q Consensus 19 ~~~~~~lfVgnLp~------~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G- 90 (278)
+...++|||+|||+ ++++++|+++|++||+|++|+|++|+.|+++||||||+|.+.++|++||+.++ ..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44578999999999 99999999999999999999999999999999999999999999999999997 67999
Q ss_pred eEEEEEEcccC
Q 023722 91 RRANCNLACLG 101 (278)
Q Consensus 91 r~i~V~~a~~~ 101 (278)
+.|+|+++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999653
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=137.60 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=75.3
Q ss_pred CCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 14 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.....+.+.++|||+|||+++++++|+++|++||+|++|+|..+ ++++|||||+|.+.++|++||+.++ .+|+|++
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34456678899999999999999999999999999999999655 5589999999999999999999997 6799999
Q ss_pred EEEEEccc
Q 023722 93 ANCNLACL 100 (278)
Q Consensus 93 i~V~~a~~ 100 (278)
|+|++++.
T Consensus 91 l~V~~a~~ 98 (109)
T 1x4a_A 91 LRVEFPRS 98 (109)
T ss_dssp CEEECCCC
T ss_pred EEEEEccc
Confidence 99999954
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.4e-19 Score=146.13 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=80.3
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
......+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999987 67999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998643
No 61
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=137.62 Aligned_cols=85 Identities=18% Similarity=0.333 Sum_probs=77.7
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCC-EEEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~-I~~v~i~-~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i 93 (278)
..+.++|||+|||+++++++|+++|++||+ |++|.|+ .|+.++++||||||+|.+.++|++||+.++ .+|+|++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346799999999999999999999999998 9999998 898899999999999999999999999984 46999999
Q ss_pred EEEEcccCCC
Q 023722 94 NCNLACLGVQ 103 (278)
Q Consensus 94 ~V~~a~~~~~ 103 (278)
+|++++.+..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=1.6e-19 Score=134.98 Aligned_cols=80 Identities=19% Similarity=0.428 Sum_probs=75.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|| .++ .+|+|++|+|+++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999 776 6799999999998
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
+.
T Consensus 83 ~~ 84 (89)
T 3ucg_A 83 RT 84 (89)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=138.36 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=77.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+...++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 456677999999999999999999999999999999999999999999999999999999999999997 6799999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
++++
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9985
No 64
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=133.43 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=75.2
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~-skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++.++. ++|||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999988766 99999999999999999999987 679999999999
Q ss_pred ccc
Q 023722 98 ACL 100 (278)
Q Consensus 98 a~~ 100 (278)
+.+
T Consensus 82 a~~ 84 (88)
T 4a8x_A 82 VLA 84 (88)
T ss_dssp ECC
T ss_pred CCC
Confidence 954
No 65
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-20 Score=133.31 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=73.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|++.++.+|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999997799999999986
No 66
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=148.58 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=75.3
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
+.++|||+||+++++|++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999997 679999999999
Q ss_pred ccc
Q 023722 98 ACL 100 (278)
Q Consensus 98 a~~ 100 (278)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 67
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=7.7e-20 Score=138.48 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=74.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
.+....++|||+|||+++++++|+++|++||+|++++++.++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999999987 6799999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
++++
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9885
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-20 Score=140.58 Aligned_cols=86 Identities=27% Similarity=0.526 Sum_probs=79.5
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345677999999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred EEcccCC
Q 023722 96 NLACLGV 102 (278)
Q Consensus 96 ~~a~~~~ 102 (278)
+++....
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9996543
No 69
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5.9e-19 Score=136.57 Aligned_cols=83 Identities=30% Similarity=0.425 Sum_probs=77.1
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
.......++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455678999999999999999999999999999999999998 89999999999999999999999987 679999999
Q ss_pred EEEcc
Q 023722 95 CNLAC 99 (278)
Q Consensus 95 V~~a~ 99 (278)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=7.2e-19 Score=132.31 Aligned_cols=82 Identities=27% Similarity=0.482 Sum_probs=75.5
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+...++|||+|||+++++++|+++|++||+|++|+|+++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999984 78999999999999999999999987 6699999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
++++.
T Consensus 81 ~~a~~ 85 (92)
T 2dgv_A 81 RIDRN 85 (92)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 99954
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=133.68 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=73.3
Q ss_pred CCCccEEEECCCCCCCCHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 19 DTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
..+.++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ ||||||+|.+.++|++||+.++ .+|+|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3466899999999999999999 99999999999999999876 8999999999999999999997 56999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++..
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99999543
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=138.50 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i 93 (278)
..+.+.++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45677899999999999999999999999999999999876 6899999999999999999874 46999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 85 ~V~~A~~~ 92 (105)
T 1sjq_A 85 YIQFSNHK 92 (105)
T ss_dssp CBCCCSSS
T ss_pred EEEEcCCC
Confidence 99999654
No 73
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=9.4e-19 Score=144.52 Aligned_cols=85 Identities=27% Similarity=0.484 Sum_probs=78.9
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567999999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++..
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 999654
No 74
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=137.31 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=73.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V 95 (278)
.....+.++|||+|||++++|++|+++|++|| +.+|+|++|+ ++++||||||+|.+.++|++||+..+++|++|.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 34556779999999999999999999999999 4599999998 899999999999999999999964347799999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
.++.
T Consensus 87 ~~~~ 90 (102)
T 1wez_A 87 FLNS 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9984
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-19 Score=135.07 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=73.3
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999999987 6699998876554
No 76
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.3e-19 Score=135.84 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=75.4
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V 95 (278)
....+.++|||+|||++++|++|+++|++||.|++ |+|+.| .+++++|||||+|.+.++|++||+..+.+|++|.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34567899999999999999999999999999998 888888 7899999999999999999999999447799999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 99854
No 77
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-19 Score=137.76 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~ 97 (278)
.+.+.++|||+|||+++|+++|+++|++||+|++|.|++|+. +++||||||+|.+.++|++||+..+.+|+|+.|+|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 556789999999999999999999999999999999999987 9999999999999999999999334779999999998
Q ss_pred ccc
Q 023722 98 ACL 100 (278)
Q Consensus 98 a~~ 100 (278)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 764
No 78
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=8.3e-19 Score=141.56 Aligned_cols=83 Identities=31% Similarity=0.438 Sum_probs=77.2
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456778999999999999999999999999999999999999999999999999999999999999997 569999999
Q ss_pred EEEc
Q 023722 95 CNLA 98 (278)
Q Consensus 95 V~~a 98 (278)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=138.06 Aligned_cols=83 Identities=18% Similarity=0.427 Sum_probs=72.1
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecC-CCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-ATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk-~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.......++|||+||++++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| .++ .+|+|++|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34567789999999999999999999999999 9999999998 68999999999999999999999 776 67999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|++++.
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 9999854
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.8e-19 Score=130.65 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=71.6
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
+|||+|||+++++++|+++|++||+|++|.|++++.+++++|||||+|.+.++|++||+..+++|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999998668899999999875
No 81
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.3e-19 Score=144.90 Aligned_cols=86 Identities=27% Similarity=0.456 Sum_probs=79.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
+..+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455677899999999999999999999999999999999999999999999999999999999999987 679999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++..
T Consensus 121 V~~a~~~ 127 (135)
T 2lea_A 121 VQMARYG 127 (135)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999643
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=130.77 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+.+.++|||+|||+++++++|+++|++| +|.+|+|+++ .+++++|||||+|.+.++|++||+ ++ .+|+|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 455678999999999999999999999999 9999999999 789999999999999999999999 87 5699999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
.+++.
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 99954
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.1e-18 Score=138.56 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=75.0
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
.+.++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++|| .++ ..|+|++|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999 676 6799999999998
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
+.
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 84
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=3.2e-18 Score=131.89 Aligned_cols=81 Identities=28% Similarity=0.406 Sum_probs=71.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
+....+.++|||+|||+++++++|+++|++||+|++|+|+ ++||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 3455678999999999999999999999999999999986 3499999999999999999987 569999999
Q ss_pred EEEcccCCCC
Q 023722 95 CNLACLGVQR 104 (278)
Q Consensus 95 V~~a~~~~~~ 104 (278)
|++++.+..+
T Consensus 77 v~~a~~~~~~ 86 (103)
T 2dgu_A 77 IVFAKPPDQK 86 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEcCCCccc
Confidence 9999765443
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=2.9e-19 Score=129.67 Aligned_cols=75 Identities=40% Similarity=0.738 Sum_probs=70.1
Q ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
+|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|++..+.+|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999983347799999999875
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=136.53 Aligned_cols=83 Identities=29% Similarity=0.422 Sum_probs=77.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.....++|||+||++++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45677999999999999999999999999999999999998 89999999999999999999999987 56999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99654
No 87
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-18 Score=132.29 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=70.7
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCC-----
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG----- 90 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G----- 90 (278)
......++|||+|||+++++++|+++|++||+|++|+|++| |||||+|.+.++|++||+.++ .+|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34567899999999999999999999999999999999876 799999999999999999997 56999
Q ss_pred eEEEEEEccc
Q 023722 91 RRANCNLACL 100 (278)
Q Consensus 91 r~i~V~~a~~ 100 (278)
+.|+|++++.
T Consensus 83 ~~i~V~~a~~ 92 (108)
T 1x4c_A 83 AYIRVKVDGP 92 (108)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEEeCCC
Confidence 9999999965
No 88
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-19 Score=139.86 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=76.6
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCE-EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I-~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
.+.+.++|||+|||+++++++|+++|++||.| ++|+|++|+ ++++||||||+|.+.++|++||+..+.+|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 45667999999999999999999999999999 899999998 8999999999999999999999983367999999999
Q ss_pred EcccCC
Q 023722 97 LACLGV 102 (278)
Q Consensus 97 ~a~~~~ 102 (278)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 996543
No 89
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=136.43 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=76.7
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
....+.+.++|||+||++++++++|+++|++||+|++|+|++|+ +++||||||+|.+.++|++||+.++ .+|+|++|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44566788999999999999999999999999999999999886 4589999999999999999999987 66999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|++++.
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999954
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2.2e-18 Score=144.12 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=79.4
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
+......++|||+|||+++++++|+++|++||+|+.|.|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455667899999999999999999999999999999999999999999999999999999999999987 569999999
Q ss_pred EEEcccCC
Q 023722 95 CNLACLGV 102 (278)
Q Consensus 95 V~~a~~~~ 102 (278)
|.++..+.
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99997543
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=136.48 Aligned_cols=86 Identities=24% Similarity=0.362 Sum_probs=76.7
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHH---HHHHhcCCEEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHhcC-Ccc
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVDAA-PVI 88 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~---~~F~~fG~I~~v~i~~dk~tg---~skG~aFV~F~~~~~A~~Ai~~~~-~~i 88 (278)
.......++|||+|||++++|++|+ ++|++||+|++|+|++++.++ +++|||||+|.+.++|++||+.++ .+|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3455677899999999999999999 999999999999999998754 566999999999999999999987 569
Q ss_pred CCeEEEEEEcccC
Q 023722 89 DGRRANCNLACLG 101 (278)
Q Consensus 89 ~Gr~i~V~~a~~~ 101 (278)
+|++|+|+++..+
T Consensus 89 ~gr~l~V~~a~~k 101 (111)
T 2cpi_A 89 DGRTLKASLGTTK 101 (111)
T ss_dssp TTEEEEEESCCCC
T ss_pred CCEEEEEEecccc
Confidence 9999999999543
No 92
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=132.28 Aligned_cols=82 Identities=33% Similarity=0.483 Sum_probs=74.1
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+...++|||+|||+++++++|+++|++| .+|++++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455678999999999999999999999977 478888999899999999999999999999999987 679999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|++++.
T Consensus 86 V~~a~~ 91 (102)
T 2fc8_A 86 LDWAKP 91 (102)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999954
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=132.18 Aligned_cols=82 Identities=26% Similarity=0.358 Sum_probs=72.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+.+.++|||+|||+++++++|+++|++||+| +|+.+ .+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456678999999999999999999999999977 56666 678999999999999999999999997 569999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999543
No 94
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=127.56 Aligned_cols=76 Identities=30% Similarity=0.519 Sum_probs=69.9
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.+...++|||+|||+++++++|+++|++||+|++|+|+ |+||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999997 5799999999999999999997 56999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++.+
T Consensus 76 ~a~~~ 80 (90)
T 2dnq_A 76 ASKNK 80 (90)
T ss_dssp CSSCC
T ss_pred ECCCC
Confidence 99543
No 95
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.8e-19 Score=134.16 Aligned_cols=79 Identities=27% Similarity=0.506 Sum_probs=73.0
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~ 100 (278)
.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.+ |++|++.++ ..|+|++|+|++|..
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 378999999999999999999999999999999999999999999999999999 999999997 669999999999965
Q ss_pred C
Q 023722 101 G 101 (278)
Q Consensus 101 ~ 101 (278)
.
T Consensus 80 ~ 80 (90)
T 2ki2_A 80 K 80 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 96
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=133.75 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCCccEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEE
Q 023722 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i 93 (278)
.....++|||+|||+ +++|++|+++|++||+|++|+|+++ |+||||+|++.++|++||+.++ .+|+||+|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445789999999999 9999999999999999999999876 5799999999999999999885 35999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999643
No 97
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8e-19 Score=137.50 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|||+++++++|+++|++||.|++|.+..+..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567999999999999999999999999999544333333378899999999999999999999987 6699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++.+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999654
No 98
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=131.48 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=71.2
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~ 92 (278)
.......++|||+|||++++|++|+++|++||+|++|.|+++ ||||||+|++.++|++||+.++ .+|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567789999999999999999999999999999998865 7899999999999999999763 4699999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|++++.+
T Consensus 83 l~V~~a~~~ 91 (101)
T 2cq1_A 83 IYIQYSNHK 91 (101)
T ss_dssp CEEEECSCS
T ss_pred EEEEEcCcc
Confidence 999999654
No 99
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=131.19 Aligned_cols=79 Identities=23% Similarity=0.242 Sum_probs=70.4
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i 93 (278)
......++|||+|||++++|++|+++|++||+|++|.|+++ ||||||+|++.++|++||+.++ .+|+|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34556799999999999999999999999999999998864 7899999999999999999874 35999999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 84 ~V~~a~~~ 91 (104)
T 1wex_A 84 FFNYSTSK 91 (104)
T ss_dssp EEEECSSS
T ss_pred EEEEccCc
Confidence 99999653
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.6e-18 Score=131.10 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=72.0
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.+.+.++|||+||++++++++|+++|++||+|++|+|+++ +|||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999876 7899999999999999999987 67999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++.+
T Consensus 95 ~a~~~ 99 (109)
T 1x4g_A 95 WGKES 99 (109)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99654
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=133.21 Aligned_cols=83 Identities=17% Similarity=0.396 Sum_probs=75.8
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc------
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI------ 88 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i------ 88 (278)
...+.+.++|||+|||+++++++|+++|++||+|++|+|++|+ +++++|||||+|.+.++|++||+.++ ..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3456678999999999999999999999999999999999998 89999999999999999999999987 557
Q ss_pred --CCeEEEEEEcc
Q 023722 89 --DGRRANCNLAC 99 (278)
Q Consensus 89 --~Gr~i~V~~a~ 99 (278)
.++.|+|+++.
T Consensus 98 ~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 98 SAPTEPLLCKFSG 110 (114)
T ss_dssp CCCSSCBEEEECC
T ss_pred cCCCCceeEEccC
Confidence 57889999985
No 102
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=7e-20 Score=144.24 Aligned_cols=84 Identities=27% Similarity=0.380 Sum_probs=78.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV 87 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--------v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~ 87 (278)
.++.+.++|||+|||+++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+.++ .+
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999999 9999999999999999999999999999999987 67
Q ss_pred cCCeEEEEEEccc
Q 023722 88 IDGRRANCNLACL 100 (278)
Q Consensus 88 i~Gr~i~V~~a~~ 100 (278)
|+|++|+|++++.
T Consensus 82 ~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 82 FSGNPIKVSFATR 94 (116)
Confidence 9999999999854
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=130.03 Aligned_cols=75 Identities=28% Similarity=0.447 Sum_probs=69.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~~ 101 (278)
++|||+|||+++++++|+++|++||+|++|+|+++ ++|||||+|.+.++|++||+.++ .+|+|++|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 68999999999999999999986 7799999999999654
Q ss_pred C
Q 023722 102 V 102 (278)
Q Consensus 102 ~ 102 (278)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=3.8e-18 Score=133.38 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=70.3
Q ss_pred hhccCCCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc
Q 023722 10 AAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (278)
Q Consensus 10 ~~~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 88 (278)
.+.......+...++|||+||++++++++|+++|++||+|++|+|+ +|||||+|.+.++|++||+.++ .+|
T Consensus 19 ~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 19 SHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp ---------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3334455677888999999999999999999999999999999997 6899999999999999999987 669
Q ss_pred CCeEEEEEEcccC
Q 023722 89 DGRRANCNLACLG 101 (278)
Q Consensus 89 ~Gr~i~V~~a~~~ 101 (278)
+|++|+|++++..
T Consensus 91 ~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 91 ANQPLEVVYSKLP 103 (108)
T ss_dssp TTEECEEESCSCC
T ss_pred CCeEEEEEEecCC
Confidence 9999999999654
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.7e-18 Score=137.31 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=75.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~---I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
..+.+.++|||+|||++++|++|+++|++||. |++|+|++|+. +++||||||+|.+.++|++||+ ++ .+|+||.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34567899999999999999999999999999 89999999987 9999999999999999999999 65 6699999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998643
No 106
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.6e-18 Score=139.78 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEE--EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~--~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~ 94 (278)
....+.++|||+|||+++||++|+++|++| .|+ +|+|++|+. +++||||||+|.+.++|++||+..+.+|+||.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344567899999999999999999999999 677 899999987 9999999999999999999999877789999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998853
No 107
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.5e-18 Score=133.22 Aligned_cols=84 Identities=30% Similarity=0.505 Sum_probs=76.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
..+...++|||+|||+++++++|+++|++||+|++|+|++|+ ++++||||||+|.+.++|++||+ ....|+|++|+|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 345677999999999999999999999999999999999998 89999999999999999999999 4467999999999
Q ss_pred EcccCC
Q 023722 97 LACLGV 102 (278)
Q Consensus 97 ~a~~~~ 102 (278)
.+..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 986543
No 108
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=125.90 Aligned_cols=78 Identities=23% Similarity=0.431 Sum_probs=70.6
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+...++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 345677899999999999999999999999999999999744 99999999999999999987 569999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9999543
No 109
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=1.2e-17 Score=160.42 Aligned_cols=84 Identities=23% Similarity=0.477 Sum_probs=78.3
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
....++|||+||++++|+++|+++|++||.|+.|.|+.|+.+++++|||||+|.+.++|++||+.|| .+|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999997 679999999999
Q ss_pred cccCC
Q 023722 98 ACLGV 102 (278)
Q Consensus 98 a~~~~ 102 (278)
+....
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97543
No 110
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.9e-18 Score=141.10 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=75.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~---I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
..+.+.++|||+|||+++||++|+++|++||. |++|+|++|+. +++||||||+|.+.++|++||+ ++ .+|+||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34567899999999999999999999999999 89999999987 9999999999999999999999 76 6799999
Q ss_pred EEEEEccc
Q 023722 93 ANCNLACL 100 (278)
Q Consensus 93 i~V~~a~~ 100 (278)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 111
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-19 Score=135.90 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=73.8
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.....++|||+|||+++++++|+++|++||+|.. .++.++.++++||||||+|.+.++|++||+ ++ .+|+|++|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999988 777888889999999999999999999999 76 77999999999
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
+++.
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 9954
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.7e-18 Score=131.63 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=71.0
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
...+...++|||+||++++++++|+++|++||+|++|+|. ++||||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455667999999999999999999999999999999997 357899999999999999999987 669999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|++++.
T Consensus 95 V~~a~~ 100 (101)
T 2la4_A 95 TGWGKE 100 (101)
T ss_dssp CCBCCC
T ss_pred EEeccC
Confidence 999853
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.5e-18 Score=134.63 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i~ 94 (278)
.....++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999999876 7899999999999999999875 469999999
Q ss_pred EEEcccCC
Q 023722 95 CNLACLGV 102 (278)
Q Consensus 95 V~~a~~~~ 102 (278)
|++++.+.
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99996543
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=124.05 Aligned_cols=79 Identities=29% Similarity=0.441 Sum_probs=71.9
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-C-CccCCeE
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGRR 92 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~Gr~ 92 (278)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||||+|.+.++|++||+.+ + ..|+|++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3456778899999999999999999999999999999999874 789999999999999999988 6 5699999
Q ss_pred EEEEEcc
Q 023722 93 ANCNLAC 99 (278)
Q Consensus 93 i~V~~a~ 99 (278)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999873
No 115
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=124.93 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=70.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+.+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999744 99999999999999999987 6699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++..
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999643
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5.9e-18 Score=131.22 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCCCccEEEECCCCCCC------CHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC
Q 023722 17 FGDTTYTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID 89 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 89 (278)
..+...++|||+|||+++ ++++|+++|++||+|++|.|+ +.++++||||||+|.+.++|++||+.++ ..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345567899999999999 789999999999999999988 4679999999999999999999999997 5699
Q ss_pred Ce-EEEEEEccc
Q 023722 90 GR-RANCNLACL 100 (278)
Q Consensus 90 Gr-~i~V~~a~~ 100 (278)
|+ +|+|+++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999999854
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=134.06 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=72.0
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
..+.++|||+|||++++|++|+++|++| .|++|+|++|+. +++||||||+|.+.++|++||+...++|+||.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 899999999986 99999999999999999999953346799999999988
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-18 Score=138.61 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=75.5
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.+.+.++|||+|||++++|++|+++|++||.|+++.++.++.+++++|||||+|.+.++|++||+ ++ .+|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 45567999999999999999999999999999997777777899999999999999999999999 76 67999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 119
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=126.23 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=68.7
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.....++|||+|||+++++++|+++|++||+|++| +.++.+++ ||||+|.+.++|++||+ ++ .+|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34567899999999999999999999999999987 66666665 99999999999999999 86 67999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
.+..+
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87543
No 120
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=8.8e-19 Score=143.62 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=71.3
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
....+.++|||+|||+++||++|+++|++|| |++|+|++|+. +++||||||+|.+.++|++|| .++ .+|++|.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3446778999999999999999999999999 77999999986 999999999999999999999 555 6799999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
..+..
T Consensus 118 ~~a~~ 122 (139)
T 2hgn_A 118 FLNST 122 (139)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99853
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1e-17 Score=141.44 Aligned_cols=86 Identities=28% Similarity=0.568 Sum_probs=75.8
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEc
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a 98 (278)
....++|||+|||+++++++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999998667899999999999
Q ss_pred ccCCCC
Q 023722 99 CLGVQR 104 (278)
Q Consensus 99 ~~~~~~ 104 (278)
.++.+.
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 765443
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=128.90 Aligned_cols=79 Identities=24% Similarity=0.246 Sum_probs=70.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C--ccCCeEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P--VIDGRRA 93 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~--~i~Gr~i 93 (278)
......++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ . .|+||+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34457899999999999999999999999999999999854 7899999999999999999986 3 3899999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
.|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999643
No 123
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.5e-18 Score=126.92 Aligned_cols=77 Identities=17% Similarity=0.377 Sum_probs=67.7
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCC-EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--CccCCeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PVIDGRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~-I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~--~~i~Gr~i~ 94 (278)
.+...++|||+|||+++++++|+++|++||+ |..+.+. ++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4567799999999999999999999999999 6666552 47899999999999999999986 469999999
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999643
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=126.30 Aligned_cols=77 Identities=22% Similarity=0.426 Sum_probs=70.1
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC--CeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID--GRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~--Gr~i~ 94 (278)
.....++|||+|||+++++++|+++|++||+|++|+|.++ ||||||+|.+.++|++||+.++ .+|+ |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456799999999999999999999999999999999764 7899999999999999999987 6699 99999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|++++.
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999954
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=127.28 Aligned_cols=78 Identities=29% Similarity=0.492 Sum_probs=71.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
....+.++|||+|||+++++++|+++|++||+|++|+|.++ ||||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34567789999999999999999999999999999999865 7899999999999999999987 6799999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
++++.
T Consensus 84 ~~a~~ 88 (99)
T 2cpj_A 84 RFACH 88 (99)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99954
No 126
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=6.4e-18 Score=133.32 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=70.2
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
....++|||+|||+++++++|+++|++|| +|+.++|..+ +++|||||+|.+.++|++||+.+| .+|+|++|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999988643 479999999999999999999997 56999999999
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
+++.
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9853
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.6e-17 Score=140.22 Aligned_cols=86 Identities=34% Similarity=0.541 Sum_probs=79.3
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V 95 (278)
+.++.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.|+|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 45667889999999999999999999999999999999999999999999999999999999999998667899999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
.++...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998643
No 128
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=133.75 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=76.0
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~---I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.+..+.++|||+|||+++++++|+++|++||. |.+|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+||.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 45567899999999999999999999999998 89999999987 9999999999999999999999 65 6799999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|..+..+
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998643
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=125.87 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=66.1
Q ss_pred ccEEEECCCCCCC------CHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe-EE
Q 023722 22 YTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR-RA 93 (278)
Q Consensus 22 ~~~lfVgnLp~~~------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr-~i 93 (278)
.++|||+|||+++ ++++|+++|++||+|++|+|+ +.++++||||||+|.+.++|++||+.++ ..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 789999999999999999987 4679999999999999999999999997 669999 88
Q ss_pred EE
Q 023722 94 NC 95 (278)
Q Consensus 94 ~V 95 (278)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.9e-17 Score=143.33 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=75.2
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.|+.|++..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999997 5699999999988
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 131
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=9.6e-18 Score=132.30 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=64.3
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE----
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR---- 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~---- 92 (278)
...+.++|||+|||++++|++|+++|++||+|++|+|+.| |||||+|.+.++|++||+.++ .+|+|++
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3456799999999999999999999999999999999866 799999999999999999997 6799998
Q ss_pred -EEEEEcc
Q 023722 93 -ANCNLAC 99 (278)
Q Consensus 93 -i~V~~a~ 99 (278)
|+|+.+.
T Consensus 85 ~i~v~~~~ 92 (115)
T 3beg_B 85 YIRVKVDG 92 (115)
T ss_dssp BCEEEECC
T ss_pred EEEeccCC
Confidence 6666653
No 132
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=136.54 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCE----EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I----~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~ 94 (278)
+.+.++|||+|||+++||++|+++|++||+| ++|+|++|+ ++++||||||+|.+.++|++||+..+++|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 4567899999999999999999999999975 689999985 89999999999999999999999845679999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 133
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.3e-17 Score=126.19 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=67.9
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
....|||+||++++||++|+++|.+||+|.++++.. +||||||+|.++++|++||+.+| .+|+||.|+|+.|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999965 58999999999999999999998 56999999999984
No 134
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=125.94 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=70.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|||+++++++|+++|++||.|+ ++++.+ +++|||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999997 677654 578999999999999999999987 6699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++.+
T Consensus 89 ~~a~~~ 94 (97)
T 2e5j_A 89 ALARQQ 94 (97)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999543
No 135
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.8e-18 Score=132.57 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=69.3
Q ss_pred CCCCccEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeEE
Q 023722 18 GDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~---~~i~Gr~i 93 (278)
.....++|||+|||++ ++|++|+++|++||+|++|+|++ +||||||+|.+.++|++||+.++ .+|+||+|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4556889999999998 99999999999999999999974 37899999999999999999874 35999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|++++.
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9999954
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=3e-17 Score=127.88 Aligned_cols=73 Identities=27% Similarity=0.518 Sum_probs=67.3
Q ss_pred CCccEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 20 TTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 20 ~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
...++|||+||+++ +++++|+++|++||+|++|+| ++|||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999998 47899999999999999999987 679999999999
Q ss_pred ccc
Q 023722 98 ACL 100 (278)
Q Consensus 98 a~~ 100 (278)
++.
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 953
No 137
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=132.16 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023722 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr 91 (278)
......++|||+||++++++++|+ ++|++||+|++|.|.+ ++++||||||+|.+.++|++||+.++ ..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345567899999999999999876 6999999999998753 57899999999999999999999997 669999
Q ss_pred EEEEEEcccC
Q 023722 92 RANCNLACLG 101 (278)
Q Consensus 92 ~i~V~~a~~~ 101 (278)
.|+|++++.+
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999654
No 138
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=131.69 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=71.7
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHhcCCccCCeEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t---g~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~ 94 (278)
+....++|||+|||++++|++|+++|++||+|+ +.++.++.+ +++||||||+|.+.++|++||+.++ .++|+.|.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEE
Confidence 345679999999999999999999999999999 888888877 7999999999999999999999984 58899888
Q ss_pred EEEcc
Q 023722 95 CNLAC 99 (278)
Q Consensus 95 V~~a~ 99 (278)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 87654
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-17 Score=126.40 Aligned_cols=76 Identities=18% Similarity=0.420 Sum_probs=67.8
Q ss_pred CCCCccEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
...+.++|||+|||+ ++++++|+++|++||+|++|+|. ||||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999999 99999999999999999999984 6899999999999999999987 6699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++.+
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 999653
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.1e-17 Score=122.98 Aligned_cols=78 Identities=27% Similarity=0.367 Sum_probs=69.5
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~f--G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
.....+.++|||+|||+++++++|+++|++| |+|++|++. +|||||+|.+.++|++||+.++ .+|+|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445677999999999999999999999999 999999874 5699999999999999999997 5699999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|++++.+
T Consensus 81 l~v~~a~~~ 89 (99)
T 2cpd_A 81 IEVTLAKPV 89 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999543
No 141
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=3.2e-17 Score=139.19 Aligned_cols=83 Identities=29% Similarity=0.422 Sum_probs=76.9
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
...+.++|||+||++++++++|+++|++||+|++|.|+.|+ +++++|||||+|.+.++|++||+.++ .+|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998 89999999999999999999999997 66999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99654
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=125.54 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=70.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+...++|||+|||+++++++|+++|++||+|+.+ +.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 455678999999999999999999999999988766 3468899999999999999999999997 6699999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
+++..
T Consensus 86 ~~a~~ 90 (96)
T 1fjc_A 86 YYTGE 90 (96)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99954
No 143
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.8e-17 Score=133.74 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=69.9
Q ss_pred cEEEECCC----CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCC----HHH----HHHHHH--hcC-Cc
Q 023722 23 TKVFVGGL----AWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEA----AMKACV--DAA-PV 87 (278)
Q Consensus 23 ~~lfVgnL----p~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~----~~~----A~~Ai~--~~~-~~ 87 (278)
++|||+|| ++.++|++|+++|++||+|.+|+++.|+.|++++|||||+|.| +++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 889988 556 56
Q ss_pred cCCeEEEEEEccc
Q 023722 88 IDGRRANCNLACL 100 (278)
Q Consensus 88 i~Gr~i~V~~a~~ 100 (278)
|+|++|+|++.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999999754
No 144
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.1e-17 Score=127.84 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
....++|||+|||+++++++|+++|++||.|++|.|+++ ++++|||||+|.+.++|++||+.++ ..|+|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999876 4469999999999999999999987 679999999999
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
+...
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9653
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.3e-17 Score=125.19 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=72.3
Q ss_pred CCCCccEEEECCCCCCCCHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
++...++|||+|||+++++++|+ ++|++||+|++|.|++ +++++|||||+|.+.++|++|++.++ ..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 44577999999999999999999 9999999999999874 47789999999999999999999987 6699999
Q ss_pred EEEEEcccC
Q 023722 93 ANCNLACLG 101 (278)
Q Consensus 93 i~V~~a~~~ 101 (278)
|+|++++.+
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999654
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=121.39 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=68.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|| ++++++|+++|++||+|++|+|. ++||||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557799999996 89999999999999999999984 468899999999999999999997 5699999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++.+
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 999654
No 147
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=124.51 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=65.8
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
...++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|.+.++|++++.. ...+++++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 46799999999999999999999999999999999865 689999999999999865433 244799999999985
Q ss_pred cC
Q 023722 100 LG 101 (278)
Q Consensus 100 ~~ 101 (278)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 148
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=9.6e-17 Score=122.82 Aligned_cols=77 Identities=19% Similarity=0.455 Sum_probs=68.3
Q ss_pred CCCCCCccEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 16 QFGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
.......++|||+||++ ++++++|+++|++||+|++|+|. +|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999983 7899999999999999999997 56999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|++++.
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999854
No 149
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=9.4e-17 Score=131.48 Aligned_cols=80 Identities=29% Similarity=0.418 Sum_probs=75.5
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEccc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~ 100 (278)
.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999999999999999999999999999999887 669999999999864
Q ss_pred C
Q 023722 101 G 101 (278)
Q Consensus 101 ~ 101 (278)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=6.3e-17 Score=132.78 Aligned_cols=80 Identities=25% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
.......++|||+|||+++++++|+++|++||+|++|+|++| ++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999877 58999999999999999999987 669999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|++++.
T Consensus 142 v~~a~~ 147 (150)
T 2i2y_A 142 VELSNG 147 (150)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999954
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=8.9e-17 Score=132.17 Aligned_cols=81 Identities=23% Similarity=0.328 Sum_probs=76.0
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999999999999999999999999999999887 66999999999986
Q ss_pred cC
Q 023722 100 LG 101 (278)
Q Consensus 100 ~~ 101 (278)
..
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 152
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=4.1e-17 Score=123.16 Aligned_cols=79 Identities=24% Similarity=0.435 Sum_probs=63.2
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~ 96 (278)
..+...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|.+.++|+++. .....+++++|+|+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEE
Confidence 34567899999999999999999999999999999999875 7999999999999998432 22234779999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
++.++
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 99654
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=127.06 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
+...++|||+|||+++++++|+++|++||.|++|.|++ +++||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999998874 47899999999999999999997 669999999999
Q ss_pred cccCC
Q 023722 98 ACLGV 102 (278)
Q Consensus 98 a~~~~ 102 (278)
+....
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97543
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1.2e-16 Score=136.79 Aligned_cols=82 Identities=22% Similarity=0.483 Sum_probs=77.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+||++++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999999997 6799999999999
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=122.25 Aligned_cols=79 Identities=16% Similarity=0.102 Sum_probs=70.8
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
....++|||+|||+++++++|+++|++||+|++| .|+.++.+++ |||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 5888876544 9999999999999999987 67999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99654
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.7e-16 Score=129.82 Aligned_cols=83 Identities=31% Similarity=0.482 Sum_probs=77.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|||+++++++|+++|++||+|++++|++|+.+++++|||||+|.+.++|++|++.++ ..|+|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 345667899999999999999999999999999999999999999999999999999999999999987 6699999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
++++
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9984
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=2.1e-16 Score=132.76 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=71.6
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCC--eEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG--RRA 93 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--r~i 93 (278)
....+..+|||+||+++++|++|+++|++||+|++|+|..++ ++|||||+|++.++|++|++.|+ .+|.+ ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 345677899999999999999999999999999999987542 57899999999999999999997 56855 999
Q ss_pred EEEEcccC
Q 023722 94 NCNLACLG 101 (278)
Q Consensus 94 ~V~~a~~~ 101 (278)
+|++++.+
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99999765
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=1.8e-16 Score=133.93 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=78.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
.....++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34677999999999999999999999999999999999999999999999999999999999999987 66999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++++
T Consensus 190 ~a~~~ 194 (198)
T 2yh0_A 190 RASVG 194 (198)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99654
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=7.6e-17 Score=120.80 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=67.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+|||++++|++|+++|++| +|++|+|. ++||||||+|.+.++|++||+.++ .+|+|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 578999999999999999999997 5699999999998
Q ss_pred cc
Q 023722 99 CL 100 (278)
Q Consensus 99 ~~ 100 (278)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 160
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=2.1e-16 Score=130.60 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=75.3
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 457899999999999999999999999999999999999999999999999999999999999987 6799999999987
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=134.98 Aligned_cols=86 Identities=22% Similarity=0.299 Sum_probs=72.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEE--E---eecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV--V---ITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~--i---~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr 91 (278)
.....++|||+|||+++++++|+++|++||.|..|. + ++.+.+++++|||||+|.+.++|++||+.++ ..|+|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 355679999999999999999999999999988741 1 1112468899999999999999999999997 569999
Q ss_pred EEEEEEcccCCC
Q 023722 92 RANCNLACLGVQ 103 (278)
Q Consensus 92 ~i~V~~a~~~~~ 103 (278)
.|+|.+++....
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999965433
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.3e-16 Score=131.22 Aligned_cols=79 Identities=30% Similarity=0.727 Sum_probs=74.0
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (278)
+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+. .+.|+|+.|.|..+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 568999999999999999999999999999999999999999999999999999999999996 4679999999988753
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.5e-16 Score=123.97 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=68.0
Q ss_pred CCCCccEEEE--CCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc-----C
Q 023722 18 GDTTYTKVFV--GGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI-----D 89 (278)
Q Consensus 18 ~~~~~~~lfV--gnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i-----~ 89 (278)
.+...++||| +||+++++|++|+++|++||+|++|.|+.+ ||||||+|.+.++|++|++.+| .+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4456788999 789999999999999999999999988643 7899999999999999999997 557 6
Q ss_pred CeEEEEEEccc
Q 023722 90 GRRANCNLACL 100 (278)
Q Consensus 90 Gr~i~V~~a~~ 100 (278)
++.|.|.++..
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 89999999853
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2.7e-16 Score=134.60 Aligned_cols=83 Identities=27% Similarity=0.407 Sum_probs=73.7
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (278)
....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 3457899999999999999999999999999999999999999999999999999999999999886 669999999988
Q ss_pred cccC
Q 023722 98 ACLG 101 (278)
Q Consensus 98 a~~~ 101 (278)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7543
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=1.7e-16 Score=137.35 Aligned_cols=80 Identities=28% Similarity=0.420 Sum_probs=73.5
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+||++++++++|+++|++||+|++|+|++|+ +.+||||||+|.+.++|++||+.+| .+|+|++|+|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 4579999999999999999999997 67999999999997
Q ss_pred cCC
Q 023722 100 LGV 102 (278)
Q Consensus 100 ~~~ 102 (278)
.+.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 543
No 166
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=4.1e-16 Score=134.02 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=74.7
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (278)
..++|||+|||+++++++|+++|++||+|.+|+|++++ ++++||||||+|.+.++|++||+.++.+|+|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999986 48999999999999999999999888899999999999865
Q ss_pred C
Q 023722 101 G 101 (278)
Q Consensus 101 ~ 101 (278)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=1.4e-16 Score=131.12 Aligned_cols=79 Identities=32% Similarity=0.621 Sum_probs=74.2
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+|||+++++++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999998 55 67999999999996
Q ss_pred c
Q 023722 100 L 100 (278)
Q Consensus 100 ~ 100 (278)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=5e-16 Score=115.27 Aligned_cols=72 Identities=19% Similarity=0.428 Sum_probs=65.6
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhc----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~ 86 (278)
+.+.++|||+|||+++++++|+++|++| | +|.++++.++ ||||||+|.+.++|++|| .++ .
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567999999999999999999999999 8 9999998765 789999999999999999 886 6
Q ss_pred ccCCeEEEEEE
Q 023722 87 VIDGRRANCNL 97 (278)
Q Consensus 87 ~i~Gr~i~V~~ 97 (278)
+|+|++|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 69999999874
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.6e-16 Score=126.29 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=71.7
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcccC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~~~ 101 (278)
++|||+|||+++++++|+++|++||+|++|+|++++. ++++|||||+|.+.++|++|++.++ ..|.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999974 7799999999999999999999887 6699999999998543
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=1e-15 Score=125.75 Aligned_cols=81 Identities=25% Similarity=0.473 Sum_probs=75.2
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCC--eEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG--RRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G--r~i~ 94 (278)
.....++|||+|||+++++++|+++|++||+|++++|++++.+++++|||||+|.+.++|.+|++.++ ..|+| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999997 56877 9999
Q ss_pred EEEc
Q 023722 95 CNLA 98 (278)
Q Consensus 95 V~~a 98 (278)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.8e-15 Score=122.57 Aligned_cols=82 Identities=16% Similarity=0.355 Sum_probs=70.4
Q ss_pred CCCCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHhcC-CccCC--
Q 023722 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACVDAA-PVIDG-- 90 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~-aFV~F~~~~~A~~Ai~~~~-~~i~G-- 90 (278)
......+..+|||+||++.+||++|+++|++||+|++|+|..+ ++|| |||+|.+.++|++|++.++ ..|.+
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 3445567889999999999999999999999999999988764 3688 9999999999999999998 56887
Q ss_pred eEEEEEEcccC
Q 023722 91 RRANCNLACLG 101 (278)
Q Consensus 91 r~i~V~~a~~~ 101 (278)
++|+|++++..
T Consensus 96 ~~LrI~~ak~~ 106 (130)
T 3zzy_A 96 CTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecCCC
Confidence 89999999754
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=1.1e-15 Score=126.10 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=71.6
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC--CccceEEEEeCCHHHHHHHHHhcCC-ccC---CeEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG--RSKGYGFVTFREPEAAMKACVDAAP-VID---GRRAN 94 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg--~skG~aFV~F~~~~~A~~Ai~~~~~-~i~---Gr~i~ 94 (278)
+.++|||+|||+++++++|+++|++||+|++|+|++++.++ +++|||||+|.+.++|++|++.++. .+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 8999999999999999999999873 443 57777
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
+..+..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 777754
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.8e-15 Score=123.83 Aligned_cols=80 Identities=25% Similarity=0.464 Sum_probs=73.3
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE--EEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR--ANC 95 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~--i~V 95 (278)
....++|||+|||+++++++|+++|++||+|++++|+.++.+++++|||||+|.+.++|++|++.++ ..|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999997 6699975 777
Q ss_pred EEc
Q 023722 96 NLA 98 (278)
Q Consensus 96 ~~a 98 (278)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.2e-15 Score=121.61 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=68.3
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|| ++++++|+++|++||+|++|+|. ++||||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999996 69999999999999999999986 468999999999999999999987 6799999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
++++..
T Consensus 106 ~~a~~~ 111 (121)
T 2bz2_A 106 NIARKQ 111 (121)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 999654
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.9e-15 Score=118.57 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=67.1
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHhcC-CccCC--eEEE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACVDAA-PVIDG--RRAN 94 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~-aFV~F~~~~~A~~Ai~~~~-~~i~G--r~i~ 94 (278)
.....+|||+||++.+++++|+++|++||+|++|+|... +|| |||+|.+.++|++|++.|+ .+|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 345567889999999999999999999999999998652 386 9999999999999999997 56887 6899
Q ss_pred EEEcccC
Q 023722 95 CNLACLG 101 (278)
Q Consensus 95 V~~a~~~ 101 (278)
|++++.+
T Consensus 96 V~~Ak~~ 102 (124)
T 2e5i_A 96 IEYARPT 102 (124)
T ss_dssp EECCSCS
T ss_pred EEEecCC
Confidence 9999654
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=2.8e-15 Score=123.73 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=72.4
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC---CeEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID---GRRA 93 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~---Gr~i 93 (278)
.....++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.++ ..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34577899999999999999999999999999999999996 58999999999999999999999997 4444 4999
Q ss_pred EEEEc
Q 023722 94 NCNLA 98 (278)
Q Consensus 94 ~V~~a 98 (278)
+|++|
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=3e-15 Score=133.91 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=74.1
Q ss_pred CCCCccEEEECCCCCCCCHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
+....++|||+||++++++++|+ ++|++||+|++|+|++ ++++||||||+|.+.++|++||+.++ .+|+|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 55678999999999999999977 8999999999999876 57899999999999999999999997 5699999
Q ss_pred EEEEEcccCC
Q 023722 93 ANCNLACLGV 102 (278)
Q Consensus 93 i~V~~a~~~~ 102 (278)
|+|++++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999986543
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=3e-15 Score=129.66 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=69.8
Q ss_pred CccEEEECCCC-CCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 21 TYTKVFVGGLA-WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 21 ~~~~lfVgnLp-~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
+.++|||+||+ +++++++|+++|++||+|++|+|+++ +||||||+|.+.++|++||+.+| .+|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 89999999999999999999999876 37999999999999999999997 6699999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=8e-15 Score=114.26 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCccEEEECCCCC-----CCCHHHHHHHHHhcCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 20 TTYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 20 ~~~~~lfVgnLp~-----~~tee~L~~~F~~fG~I~~v~i~~dk~t-g~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
...+.|+|.||-. +-++++|+++|++||+|++|.|++++.+ ++++||+||+|.+.++|.+|++.|| ..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568999999952 2378999999999999999999998765 6899999999999999999999997 6699999
Q ss_pred EEEEEccc
Q 023722 93 ANCNLACL 100 (278)
Q Consensus 93 i~V~~a~~ 100 (278)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=110.90 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=61.3
Q ss_pred cEEEECCCCCCCCHHH----HHHHHHhc-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 23 TKVFVGGLAWETQKET----MEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~----L~~~F~~f-G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
+.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+ ..|.||.|+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599998 23 999999999999999999997 66999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+|+.+
T Consensus 80 ~A~~~ 84 (96)
T 2diu_A 80 FTPKN 84 (96)
T ss_dssp SSCCS
T ss_pred ecCCC
Confidence 99654
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.57 E-value=6.5e-15 Score=122.25 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
..+...++|||+|||+++++++|+++|++||+|..+ +.+++++|||||+|.+.++|.+||+.++ .+|+|++|+|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345577999999999999999999999999988766 4578999999999999999999999997 6799999999
Q ss_pred EEccc
Q 023722 96 NLACL 100 (278)
Q Consensus 96 ~~a~~ 100 (278)
+++.+
T Consensus 169 ~~a~~ 173 (175)
T 1fje_B 169 YYTGE 173 (175)
T ss_dssp EECSS
T ss_pred EecCC
Confidence 99954
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=7.1e-15 Score=130.63 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCCccEEEECCCCCCC---------CHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc
Q 023722 19 DTTYTKVFVGGLAWET---------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~---------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 88 (278)
+.+.++|||+||++++ +|++|+++|++||+|++|+|+.+ ||||||+|.+.++|++|++.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5678999999999998 79999999999999999999864 7899999999999999999997 557
Q ss_pred ------------CCeEEEEEEcccC
Q 023722 89 ------------DGRRANCNLACLG 101 (278)
Q Consensus 89 ------------~Gr~i~V~~a~~~ 101 (278)
+|+.|.|++|+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999643
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=1.6e-14 Score=126.25 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCCccEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 19 ~~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
....++|||+|||+ ++++++|+++|++||+|++|+|++++ +|||||+|.+.++|++||+.++ ..|+|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35679999999999 99999999999999999999999885 7899999999999999999886 67999999999
Q ss_pred EcccC
Q 023722 97 LACLG 101 (278)
Q Consensus 97 ~a~~~ 101 (278)
+++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98654
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=2.6e-14 Score=127.99 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=76.3
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
..++|||+|||+++++++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.++ ..|+|+.|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999887 66999999999996
Q ss_pred cC
Q 023722 100 LG 101 (278)
Q Consensus 100 ~~ 101 (278)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.6e-14 Score=127.80 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC-CeEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GRRANC 95 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-Gr~i~V 95 (278)
.....++|||+||++++++++|+++|++||+|++|+|+.++ +|||||+|.+.++|++||+.++ .+|+ |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999999764 6899999999999999999997 5688 999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9984
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=1.2e-14 Score=130.56 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=73.6
Q ss_pred CCCCccEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCC-CCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEE
Q 023722 18 GDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~-tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~ 94 (278)
.....++|||+|||++ +++++|+++|++||.|++|+|++++. |++++|||||+|.+.++|.+|| .++ ..|+|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999877 6999999999999999999999 887 569999999
Q ss_pred EEEccc
Q 023722 95 CNLACL 100 (278)
Q Consensus 95 V~~a~~ 100 (278)
|.++.+
T Consensus 285 V~~a~~ 290 (292)
T 2ghp_A 285 VSLADK 290 (292)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999964
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=1.7e-14 Score=129.19 Aligned_cols=85 Identities=13% Similarity=0.134 Sum_probs=77.4
Q ss_pred CCCCccEEEECCCCCCC-CHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 18 GDTTYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~-tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
.....++|||+|||+++ ++++|+++|++||.|++|+|++++ +++++|+|||+|.+.++|.+|++.++ ..|+|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44577899999999995 999999999999999999999987 79999999999999999999999997 6699999999
Q ss_pred EEcccCCC
Q 023722 96 NLACLGVQ 103 (278)
Q Consensus 96 ~~a~~~~~ 103 (278)
.++.++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99976543
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=2.7e-15 Score=124.55 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=72.2
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
.+..+.++|||+|||+++++++|+++|++||.|.. .++.+..++++||||||+|.+.++|++||+ ++ ..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 35667899999999999999999999999998776 445555678999999999999999999995 65 6799999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
.++...
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 998653
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=6.8e-14 Score=109.47 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCCCccEEEECCCCCCCC-----------HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 16 QFGDTTYTKVFVGGLAWETQ-----------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 16 ~~~~~~~~~lfVgnLp~~~t-----------ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
.......+.|+|.||-...+ +++|+++|++||+|++|.| .|+ .++|||||+|.+.++|++||+.+
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34556789999999944332 6899999999999999966 554 37999999999999999999999
Q ss_pred C-CccCCeEEEEEEcccC
Q 023722 85 A-PVIDGRRANCNLACLG 101 (278)
Q Consensus 85 ~-~~i~Gr~i~V~~a~~~ 101 (278)
+ ..|+||+|+|+++..+
T Consensus 85 ng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TTCEETTEECEEEECCSC
T ss_pred CCCEECCcEEEEEEeCCC
Confidence 7 6699999999999653
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=121.76 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=70.0
Q ss_pred CccEEEECCCCC-CCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 21 TYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 21 ~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
..++|||+|||+ ++++++|+++|++||+|++|+|++++ +|||||+|.+.++|++||+.++ ..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998875 7899999999999999999886 6699999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 191
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=2.4e-14 Score=111.22 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=63.2
Q ss_pred ECCCCCCCCHHHHHHHH------------HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEE
Q 023722 27 VGGLAWETQKETMEKYF------------EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (278)
Q Consensus 27 VgnLp~~~tee~L~~~F------------~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i 93 (278)
+.+|++++++++|+++| ++||+|++|+|++++. +++|||+||+|.+.++|++|++.+| ..++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888877766 9999999999998864 7899999999999999999999997 66999999
Q ss_pred EEEEc
Q 023722 94 NCNLA 98 (278)
Q Consensus 94 ~V~~a 98 (278)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1.2e-13 Score=107.54 Aligned_cols=81 Identities=12% Similarity=0.015 Sum_probs=69.7
Q ss_pred CCccEEEECCC--CCCCC--------HHHHHHHHHhcCCEEEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHhcC-C
Q 023722 20 TTYTKVFVGGL--AWETQ--------KETMEKYFEQFGEILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACVDAA-P 86 (278)
Q Consensus 20 ~~~~~lfVgnL--p~~~t--------ee~L~~~F~~fG~I~~v~i~~dk~t--g~skG~aFV~F~~~~~A~~Ai~~~~-~ 86 (278)
...+.|.|.|+ +.++. +++|+++|++||+|++|+|++++.+ ++++|++||+|.+.++|++|++.|| .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46688899998 33443 4799999999999999999998765 4789999999999999999999998 6
Q ss_pred ccCCeEEEEEEccc
Q 023722 87 VIDGRRANCNLACL 100 (278)
Q Consensus 87 ~i~Gr~i~V~~a~~ 100 (278)
.++||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 69999999999853
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=7.8e-14 Score=124.26 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=69.8
Q ss_pred CCCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEE
Q 023722 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (278)
Q Consensus 17 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V 95 (278)
......++|||+|||+++|+++|+++|++||+|.+|.|.++ +|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 34466789999999999999999999999999999999654 7899999999999999999887 6699999999
Q ss_pred EEcc
Q 023722 96 NLAC 99 (278)
Q Consensus 96 ~~a~ 99 (278)
.++.
T Consensus 91 ~~a~ 94 (261)
T 3sde_A 91 RFAT 94 (261)
T ss_dssp EECC
T ss_pred eecc
Confidence 9985
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.9e-13 Score=102.89 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=63.7
Q ss_pred CCCccEEEECCCC-------CCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCe
Q 023722 19 DTTYTKVFVGGLA-------WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (278)
Q Consensus 19 ~~~~~~lfVgnLp-------~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr 91 (278)
+...++|-|.-.. .+++|++|+++|++||+|++|.|+ +++||||||+|.+.++|++||+.++ .+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCC
Confidence 3345677766443 458999999999999999999997 3679999999999999999999853 47899
Q ss_pred EEEEEEcccC
Q 023722 92 RANCNLACLG 101 (278)
Q Consensus 92 ~i~V~~a~~~ 101 (278)
.|+|++++..
T Consensus 81 ~l~V~~a~~~ 90 (100)
T 2d9o_A 81 PLKISWLEGQ 90 (100)
T ss_dssp BCEEECSSCC
T ss_pred eEEEEEccCC
Confidence 9999998543
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=4.7e-14 Score=122.08 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=66.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCE--EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe----EE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEI--LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR----RA 93 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I--~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr----~i 93 (278)
..++|||+|||++++|++|+++|++||.| ++|+|+.++ ++++|||||+|.+.++|.+||+.+| .+|+++ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899998875 5567999999999999999999997 568876 46
Q ss_pred EEEEc
Q 023722 94 NCNLA 98 (278)
Q Consensus 94 ~V~~a 98 (278)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.2e-13 Score=123.05 Aligned_cols=80 Identities=29% Similarity=0.311 Sum_probs=72.6
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc-cC---CeEEEE
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV-ID---GRRANC 95 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~-i~---Gr~i~V 95 (278)
..++|||+||++++++++|+++|++||+|++|+|+.| .+++++|||||+|.+.++|.+||+.++ .. +. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4579999999999999999999999999999999999 589999999999999999999999994 43 44 999999
Q ss_pred EEcccC
Q 023722 96 NLACLG 101 (278)
Q Consensus 96 ~~a~~~ 101 (278)
+++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998654
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=9.4e-14 Score=124.78 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=68.8
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (278)
..++|||+|||+++++++|+++|++|| +|.+|+|++++. ++++|||||+|.+.++|.+||+.++ ..|+|+.|+|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999876 8899999999999999999999887 6799999999998
Q ss_pred ccC
Q 023722 99 CLG 101 (278)
Q Consensus 99 ~~~ 101 (278)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=2e-13 Score=112.58 Aligned_cols=73 Identities=18% Similarity=0.403 Sum_probs=64.4
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhc----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 88 (278)
+.++|||+|||+++++++|+++|++| | .|.++++.+ ++|||||+|.+.++|++|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 777777654 4789999999999999999 676 679
Q ss_pred CCeEEEEEEccc
Q 023722 89 DGRRANCNLACL 100 (278)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (278)
+|+.|+|+.+..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998743
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.46 E-value=2.1e-13 Score=119.02 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GRRANCN 96 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-Gr~i~V~ 96 (278)
...++|||+||++++++++|+++|++|| +|++|+|+.+ ++|||||+|.+.++|++||+.++ ..|+ |++|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999653 37899999999999999999997 6688 9999999
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
++++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=116.71 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC-CeEEEEE
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GRRANCN 96 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~-Gr~i~V~ 96 (278)
...++|||+||++++++++|+++|++|| +|++|+|+.+ .+|+|||+|.+.++|++|++.++ ..|+ |++|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999999764 27899999999999999999997 5688 9999999
Q ss_pred Eccc
Q 023722 97 LACL 100 (278)
Q Consensus 97 ~a~~ 100 (278)
++++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9854
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=4.1e-13 Score=113.13 Aligned_cols=74 Identities=18% Similarity=0.392 Sum_probs=63.3
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhc----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i 88 (278)
..++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5666655 345899999999999999999 776 569
Q ss_pred CCeEEEEEEcccC
Q 023722 89 DGRRANCNLACLG 101 (278)
Q Consensus 89 ~Gr~i~V~~a~~~ 101 (278)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988543
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=5.1e-13 Score=106.26 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=69.4
Q ss_pred CccEEEECCCC--CCC---CHHHHHHHHHhcCCEEEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHhcC-CccCC
Q 023722 21 TYTKVFVGGLA--WET---QKETMEKYFEQFGEILEAVVITDKA----TGRSKGYGFVTFREPEAAMKACVDAA-PVIDG 90 (278)
Q Consensus 21 ~~~~lfVgnLp--~~~---tee~L~~~F~~fG~I~~v~i~~dk~----tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~G 90 (278)
..+.|+|.|+- .++ .+++|+++|++||+|++|+|++++. +++++||+||+|.+.++|.+|++.+| ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56889999983 222 3689999999999999999999865 46788999999999999999999998 66999
Q ss_pred eEEEEEEccc
Q 023722 91 RRANCNLACL 100 (278)
Q Consensus 91 r~i~V~~a~~ 100 (278)
|.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=3.8e-12 Score=118.59 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCCCCccEEEECC--CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc---CC
Q 023722 17 FGDTTYTKVFVGG--LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI---DG 90 (278)
Q Consensus 17 ~~~~~~~~lfVgn--Lp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i---~G 90 (278)
..+...++|||+| |++.+||++|+++|++||+|++|.|.+ +||||||+|.+.++|++||+.+| .++ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456778999999 578999999999999999999987753 47999999999999999999998 444 24
Q ss_pred e--EEEEEEc
Q 023722 91 R--RANCNLA 98 (278)
Q Consensus 91 r--~i~V~~a 98 (278)
+ .|.|++.
T Consensus 87 ~~~~ly~~~~ 96 (345)
T 3tht_A 87 QKITLYLNFV 96 (345)
T ss_dssp CEEECEEEEC
T ss_pred CceEEEEEEe
Confidence 5 4666666
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=3e-11 Score=95.44 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=62.6
Q ss_pred CccEEEECCCCC--C--------CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC
Q 023722 21 TYTKVFVGGLAW--E--------TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID 89 (278)
Q Consensus 21 ~~~~lfVgnLp~--~--------~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 89 (278)
..+.|.|.|+=. + --+++|+++|++||+|++|.|.++. ++||+||+|.+.++|++|++.|| ..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456677777722 1 1245889999999999999997653 58999999999999999999998 5699
Q ss_pred CeEEEEEEccc
Q 023722 90 GRRANCNLACL 100 (278)
Q Consensus 90 Gr~i~V~~a~~ 100 (278)
||.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.6e-10 Score=90.15 Aligned_cols=80 Identities=18% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCCCCCCccEEEECCCCCC-CCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHHhcC---CccC
Q 023722 15 GQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACVDAA---PVID 89 (278)
Q Consensus 15 ~~~~~~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~-~~~A~~Ai~~~~---~~i~ 89 (278)
.+..-.+.+-|+|+||+++ +++++|+++|++||+|..|++.++.. .|||+|.+ .++|.+|++.++ .+|+
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3455677899999999999 99999999999999999999998865 59999999 899999999984 3599
Q ss_pred CeEEEEEEccc
Q 023722 90 GRRANCNLACL 100 (278)
Q Consensus 90 Gr~i~V~~a~~ 100 (278)
+..++++....
T Consensus 85 g~~~~~evL~G 95 (121)
T 1owx_A 85 NKEVTWEVLEG 95 (121)
T ss_dssp SSSEEEEECCH
T ss_pred CcEEEEEECCC
Confidence 99999887754
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=9.1e-10 Score=83.25 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=59.0
Q ss_pred CccEEEECCCCC----CCCH----HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023722 21 TYTKVFVGGLAW----ETQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (278)
Q Consensus 21 ~~~~lfVgnLp~----~~te----e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr 91 (278)
..-+|+|.-++. ++-. .+|.+.|++||+|..++|..|+ +||+|.+.++|.+||+ ++ ..|+||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 345677776651 2323 5789999999999999999884 8999999999999998 76 669999
Q ss_pred EEEEEEcccC
Q 023722 92 RANCNLACLG 101 (278)
Q Consensus 92 ~i~V~~a~~~ 101 (278)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999643
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=5.4e-09 Score=90.48 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHhcCCEEEEEEeecC----CCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEEEcc
Q 023722 33 ETQKETMEKYFEQFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (278)
Q Consensus 33 ~~tee~L~~~F~~fG~I~~v~i~~dk----~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (278)
+-.+++|++.|++||+|++|.|+++. .+++++|++||+|.+.++|++|++.++ ..++||.|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34578999999999999999998654 445899999999999999999999998 56999999999985
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.8e-09 Score=81.02 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=59.7
Q ss_pred CCccEEEECCCCCC------CCH---HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC
Q 023722 20 TTYTKVFVGGLAWE------TQK---ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID 89 (278)
Q Consensus 20 ~~~~~lfVgnLp~~------~te---e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~ 89 (278)
...-+|+|.-++.+ .++ .+|.+.|++||+|..++|..|+ +||+|.+.++|.+||+ ++ .+|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 35577889877632 232 4688999999999999999884 9999999999999999 76 7799
Q ss_pred CeEEEEEEccc
Q 023722 90 GRRANCNLACL 100 (278)
Q Consensus 90 Gr~i~V~~a~~ 100 (278)
||.|+|+++.+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998743
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.3e-06 Score=66.57 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=65.4
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhc-----CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeE
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQF-----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~f-----G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~ 92 (278)
+...++|-+-|||+.++++.|+.+++.+ |.|+++.+..|. +=|+|+|.|..+|-||.-.++ .+|+||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4456888888999999999999999999 999999999884 369999999999999998886 6799999
Q ss_pred EEEEEc
Q 023722 93 ANCNLA 98 (278)
Q Consensus 93 i~V~~a 98 (278)
|+|--.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999654
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.4e-05 Score=61.50 Aligned_cols=73 Identities=29% Similarity=0.353 Sum_probs=63.0
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHh---c--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ---F--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~---f--G~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~ 92 (278)
+..--++|.|.|||+++++|.|+-+|++ - |+|++|+... .-|+|+|.+.+.|++.|+...|.|++.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 4455689999999999999999999987 2 5888887754 2689999999999999999889999999
Q ss_pred EEEEEc
Q 023722 93 ANCNLA 98 (278)
Q Consensus 93 i~V~~a 98 (278)
|.|.-.
T Consensus 76 LsV~P~ 81 (104)
T 2dhx_A 76 LSLRPA 81 (104)
T ss_dssp CEEEEC
T ss_pred EEEEcC
Confidence 999775
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.00057 Score=52.55 Aligned_cols=75 Identities=11% Similarity=0.067 Sum_probs=61.2
Q ss_pred CCccEEEECCCCCCC-C----HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeEE
Q 023722 20 TTYTKVFVGGLAWET-Q----KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~-t----ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~-~i~Gr~i 93 (278)
.-.++|+|.||+.++ + .+.++++|.+|+++.....++.- .=..|.|.+.++|.+|-..+++ .++|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 345789999998865 2 25778999999999888777552 1368999999999999999975 4999999
Q ss_pred EEEEccc
Q 023722 94 NCNLACL 100 (278)
Q Consensus 94 ~V~~a~~ 100 (278)
+|-++..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999863
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.28 E-value=0.00056 Score=51.97 Aligned_cols=55 Identities=22% Similarity=0.312 Sum_probs=46.6
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
..+-++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4455555 9999999999999999999 4567777774 6999999999999999876
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0018 Score=51.05 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=58.7
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC-eEEEEE
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCN 96 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~G-r~i~V~ 96 (278)
+....+-|.|-+++++. .+.|.++|++||+|.+...... ..+-.|+|.++.+|++||.+....|++ -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34567888899999884 6677788999999999887322 348999999999999999997777874 666776
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.93 E-value=0.0034 Score=47.12 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=51.4
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHhcC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~--skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
+||.|++||+.+||+++.+.+....++.-......+.+.+ .-.-|+|.|.+.+++.+..+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 6899999999999999999999888777666655554432 22568999999999999888886
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.77 E-value=0.0017 Score=49.52 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=46.0
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
+-++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34455 9999999999999999999 6677888774 6999999999999999976
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.08 E-value=0.0026 Score=61.08 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.5
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
.++|||. ++.++++.+|.++|++||.|.++.+-+++ .-|+.|+|.+.+++.+++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 5789997 79999999999999999999999887653 259999999999998877554
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.73 E-value=0.012 Score=46.96 Aligned_cols=77 Identities=21% Similarity=0.323 Sum_probs=54.9
Q ss_pred ccEEEECCCCCCCCHHHHHHHHHhcCCEEE-EEEeec--------CCCCC-----ccceEEEEeCCHHHHHHHHHhcCCc
Q 023722 22 YTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITD--------KATGR-----SKGYGFVTFREPEAAMKACVDAAPV 87 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~d--------k~tg~-----skG~aFV~F~~~~~A~~Ai~~~~~~ 87 (278)
...|.|-+.|++. ...+-+.|++||.|.+ +.+.++ +.+.+ ...+-.|+|+++.+|++||.+...+
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 4567777897664 4566678999999877 222210 00011 2457799999999999999999888
Q ss_pred cCCeEEEEEEcc
Q 023722 88 IDGRRANCNLAC 99 (278)
Q Consensus 88 i~Gr~i~V~~a~ 99 (278)
|+|..|=|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888775
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.51 E-value=0.01 Score=47.68 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=28.3
Q ss_pred EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 51 EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 51 ~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
.++|++++. +++||+||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhc
Confidence 467777754 689999999999999999999875
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.66 E-value=0.03 Score=42.39 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=45.7
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHhcC
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~--skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
..-||.|+.||+.+||+++.+.++..-++........+.+-+ .-.-|+|.|.+.+++..-.+..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 456899999999999999888777654543222222222211 12458999999999999888886
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.99 E-value=0.064 Score=42.63 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=34.4
Q ss_pred CCccceEEEEeCCHHHHHHHHHhc-C-CccCCeEEEEEEccc
Q 023722 61 GRSKGYGFVTFREPEAAMKACVDA-A-PVIDGRRANCNLACL 100 (278)
Q Consensus 61 g~skG~aFV~F~~~~~A~~Ai~~~-~-~~i~Gr~i~V~~a~~ 100 (278)
.+.+|+++|+|.+.++|++|++.+ + .+|+| .+++..+..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 567899999999999999999999 7 66999 899988754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.89 E-value=0.82 Score=44.16 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=45.9
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
....++|+ ++..+...+|.++|+.||. .+|+++.|. .+||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 45566665 8889999999999999994 466666553 69999999999999999874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=79.18 E-value=4.4 Score=28.12 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=40.2
Q ss_pred EEEECC-CCCCCCHHHHHHHHHhcC-----CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeEEEEE
Q 023722 24 KVFVGG-LAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (278)
Q Consensus 24 ~lfVgn-Lp~~~tee~L~~~F~~fG-----~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~-~~i~Gr~i~V~ 96 (278)
+|||.. -...++..+|..++..-+ +|-.++|..+ |.||+... +.+.++++.++ ..+.|++++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 455541 133567777777776544 4566777544 89999865 45778888886 56999999998
Q ss_pred Ec
Q 023722 97 LA 98 (278)
Q Consensus 97 ~a 98 (278)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=61.62 E-value=1.7 Score=32.68 Aligned_cols=20 Identities=10% Similarity=0.343 Sum_probs=0.0
Q ss_pred CCCccEEEECCCCCCCCHHH
Q 023722 19 DTTYTKVFVGGLAWETQKET 38 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~ 38 (278)
..+.++|||+||++++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34567899999999999874
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=54.37 E-value=36 Score=22.47 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=43.2
Q ss_pred CccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023722 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (278)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~ 85 (278)
...++.|.++.-.-=...|++.+++ -.|..+.+... .+-+.|+|.+.++..++|+...
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 3456888888777677889999988 88888888554 2356788877777777887754
No 225
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=50.68 E-value=39 Score=24.45 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=32.7
Q ss_pred CHHHHHHHHH----hcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023722 35 QKETMEKYFE----QFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (278)
Q Consensus 35 tee~L~~~F~----~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~ 86 (278)
.|+.+++.++ ..+ +|.++.++.. .+||-||+++..++...+|+...+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 4555555443 223 4666666542 689999999999999899988754
No 226
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=48.80 E-value=42 Score=25.14 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
++.-+.-++|.... +.||.-.++....+ -..|-..+.++.++||+.++....-+.|+|-+..
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 56678878876555 67998888777633 2678889999999999998644444555555553
No 227
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.58 E-value=42 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.2
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 023722 48 EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (278)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~ 87 (278)
.|.+|... + ..|||-|||=.+..++.+||+.+.+.
T Consensus 40 ~I~Si~~~-~----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-E----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-T----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-C----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36666543 2 25999999999999999999998654
No 228
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.45 E-value=70 Score=23.12 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=36.4
Q ss_pred ECCCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHh
Q 023722 27 VGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (278)
Q Consensus 27 VgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~ 83 (278)
+-.++...+..+|++.+++ |+ +|.+|..+.-+ .+.. -|+|++..-.+|.+....
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCce--EEEEEcCCCCcHHHHHHh
Confidence 3346788999999999987 55 66777655433 1222 389999877666655443
No 229
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=39.33 E-value=1.1e+02 Score=22.48 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=54.1
Q ss_pred CCCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-CC-------ccCC
Q 023722 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-AP-------VIDG 90 (278)
Q Consensus 19 ~~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~-~~-------~i~G 90 (278)
-...+-|-|-|+|..+-..++.-.....|---.|+.+. |-+.+.|.+.++..-||..+ |+ +|.|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirg 80 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRG 80 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETT
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcc
Confidence 34567788889999999888887777888666666653 36999999999999999886 32 3677
Q ss_pred eEEEEEEc
Q 023722 91 RRANCNLA 98 (278)
Q Consensus 91 r~i~V~~a 98 (278)
..+.|-..
T Consensus 81 qicdvist 88 (129)
T 4eyt_A 81 QICDVIST 88 (129)
T ss_dssp EEEEEECC
T ss_pred eeeeeeec
Confidence 77666543
No 230
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=45.44 E-value=6.3 Score=29.85 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceE--EEEeCCHHHHHHHHHhcCCccC
Q 023722 32 WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYG--FVTFREPEAAMKACVDAAPVID 89 (278)
Q Consensus 32 ~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~a--FV~F~~~~~A~~Ai~~~~~~i~ 89 (278)
-..++++|+.+..+.+ +..+.+.+....|+.. |. +=.|.+.++|.+|++.|..+|.
T Consensus 32 a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 32 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 3456677888777776 4456555443333322 22 2378999999999999875543
No 231
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=38.65 E-value=1.1e+02 Score=22.06 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=35.6
Q ss_pred cEEEECCCCCCCCHHHHHHHHH-------hcCCEEEEEEeecCCCCCccce--E-EEEeCCHHHHHH
Q 023722 23 TKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKATGRSKGY--G-FVTFREPEAAMK 79 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~tg~skG~--a-FV~F~~~~~A~~ 79 (278)
+.|.+-.|.+++++++++++.+ +.-.|+++.+-++.. .+.++| + .++|+|.++.+.
T Consensus 6 ~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 6 LHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 3444446788888776554443 356788888877643 444544 3 358999887654
No 232
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=34.78 E-value=1.1e+02 Score=22.73 Aligned_cols=63 Identities=6% Similarity=-0.019 Sum_probs=39.7
Q ss_pred CCCCccEEEECCCCCCCCHHHHHHHHHh-------cCCEEEEEEeecCCCCCccce--EE-EEeCCHHHHHHHH
Q 023722 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ-------FGEILEAVVITDKATGRSKGY--GF-VTFREPEAAMKAC 81 (278)
Q Consensus 18 ~~~~~~~lfVgnLp~~~tee~L~~~F~~-------fG~I~~v~i~~dk~tg~skG~--aF-V~F~~~~~A~~Ai 81 (278)
.....+.|.+-.|.+++++++++++.+. .-.|+++.+-++-. .+.++| +| ++|+|.++.+.-.
T Consensus 18 ~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 18 QGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp SSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 3444566666678889888876655543 34577777766643 444543 43 5888887765433
No 233
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=34.41 E-value=1.5e+02 Score=22.29 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHH-------hcCCEEEEEEeecCCC-CCccce--EE-EEeCCHHHHHHHH
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT-GRSKGY--GF-VTFREPEAAMKAC 81 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~t-g~skG~--aF-V~F~~~~~A~~Ai 81 (278)
.-.+.|.+-.|.+++++++++++.+ +.-.|+++.+-++-.. ++.++| +| ++|+|.++.+.-.
T Consensus 19 ~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 19 GMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3456666668998988886655543 3557888887766432 344554 43 5899988876543
No 234
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.28 E-value=47 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023722 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (278)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (278)
+|++|+|.+-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887776678999999999975
No 235
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.08 E-value=1.2e+02 Score=24.82 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=31.8
Q ss_pred CCHHHHHHHH--HhcCCEEEEEEeecCCCCCccceEEEEeC-CHHHHHHHHHhc
Q 023722 34 TQKETMEKYF--EQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVDA 84 (278)
Q Consensus 34 ~tee~L~~~F--~~fG~I~~v~i~~dk~tg~skG~aFV~F~-~~~~A~~Ai~~~ 84 (278)
....+|++.| ..|..++ |+.+.++ ..+.|++.|+|. |..-...|++.-
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHHH
Confidence 3457889977 8898755 4444443 347899999997 555555565543
No 236
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.18 E-value=62 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.8
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023722 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (278)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (278)
+|++|+|.+-...++-|+|+=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887776668999999999975
No 237
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=29.07 E-value=1.7e+02 Score=21.37 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=39.0
Q ss_pred ccEEEECCCCCCCCHHHHHHHHH-------hcCCEEEEEEeecCCC-CCccce--E-EEEeCCHHHHHHHHH
Q 023722 22 YTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT-GRSKGY--G-FVTFREPEAAMKACV 82 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~t-g~skG~--a-FV~F~~~~~A~~Ai~ 82 (278)
.+.|.+-.|.+++++++++++.+ +.-.|+++.+-++... ++.++| + .++|+|.++.+.-..
T Consensus 11 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 11 VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 45566667888888887655543 3456778877666432 344554 4 368999988766443
No 238
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.27 E-value=94 Score=22.34 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=33.0
Q ss_pred EECCCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHH
Q 023722 26 FVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAA 77 (278)
Q Consensus 26 fVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A 77 (278)
|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. +.. -|+|++..-++|
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~K--KA~VtL~~g~~a 75 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEK--KAVVRLSEDDDA 75 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSE--EEEEEECTTSCH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-Cce--EEEEEECCCCcH
Confidence 34446789999999999986 56 667776554431 222 389999766554
No 239
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.91 E-value=68 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.5
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023722 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (278)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (278)
+|++|+|.+-...++-|+|+=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57888887776678999999999975
No 240
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.91 E-value=84 Score=26.33 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=23.2
Q ss_pred ccceEEEEeCCHHHHHHHHHhcCCcc
Q 023722 63 SKGYGFVTFREPEAAMKACVDAAPVI 88 (278)
Q Consensus 63 skG~aFV~F~~~~~A~~Ai~~~~~~i 88 (278)
.|||-|||=.+..++++||+.+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 58999999999999999999987653
No 241
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=24.90 E-value=74 Score=28.97 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=39.6
Q ss_pred EEECCCCCCC----CHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCe
Q 023722 25 VFVGGLAWET----QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (278)
Q Consensus 25 lfVgnLp~~~----tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr 91 (278)
-+||||..-. ....+.++.++||.|..+.+.. --+|...|.+.+++++......+.+|
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 4688876432 2456778888999998887732 24677789999998886643334443
No 242
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=24.03 E-value=2e+02 Score=20.66 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=37.3
Q ss_pred ccEEEECCCCCCCCHHHHHHHHH-------hcCCEEEEEEeecCCC---CCccce--E-EEEeCCHHHHHH
Q 023722 22 YTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT---GRSKGY--G-FVTFREPEAAMK 79 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~t---g~skG~--a-FV~F~~~~~A~~ 79 (278)
.+.|.+-.|.+++++++++++.+ +.-.|+++.+-++-.. ++.++| + .++|+|.++.+.
T Consensus 9 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 9 VKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 45565667888888887654443 3556788877666432 444554 4 358999888754
No 243
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=23.47 E-value=1.4e+02 Score=18.68 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=40.3
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC---CHHHHHHHHHhcC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR---EPEAAMKACVDAA 85 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~---~~~~A~~Ai~~~~ 85 (278)
.++.|.++.-.--...|++.+.+.-.|.++.+.... +-..|+|. +.++..++|+...
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~G 63 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERAG 63 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHTT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHHcC
Confidence 457788877666677889999998889988886553 25677774 4556666776653
No 244
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=23.23 E-value=2.3e+02 Score=20.98 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEE
Q 023722 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (278)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~ 97 (278)
++.-+.-++|.... ..||.-.++....+. -.|-..+.++.++||+.++....-+.|+|-+
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 56667778887666 579998888777542 6788899999999999985333333444433
No 245
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=23.18 E-value=1.5e+02 Score=18.90 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=41.8
Q ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC----CHHHHHHHHHhcC
Q 023722 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR----EPEAAMKACVDAA 85 (278)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~----~~~~A~~Ai~~~~ 85 (278)
.++.|.++.-.--...|++.+.+.-.|.++.+.... +-+.|+|. +.++..++|+...
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 64 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDAG 64 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHCC
Confidence 457777877655567889999998889888886552 35788885 5667777887764
No 246
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=22.90 E-value=1.7e+02 Score=19.29 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=42.8
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC----CHHHHHHHHHhcC
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR----EPEAAMKACVDAA 85 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~----~~~~A~~Ai~~~~ 85 (278)
....++.|.++.-..-...|++.+.+.-.|..+.+... .+-..|+|. +.+...++|+...
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 71 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAMG 71 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 34567889888776666779999998888988887554 235778885 3456667776653
No 247
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.47 E-value=1.1e+02 Score=24.58 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHhcCCEE---EEEEeecCCCCCccceEEE
Q 023722 34 TQKETMEKYFEQFGEIL---EAVVITDKATGRSKGYGFV 69 (278)
Q Consensus 34 ~tee~L~~~F~~fG~I~---~v~i~~dk~tg~skG~aFV 69 (278)
.|+++|+++-.+.|++. ++.|..|..+|+.+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58999999999999874 4566666557999988886
No 248
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=22.44 E-value=2.5e+02 Score=21.01 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=35.6
Q ss_pred ccEEEECCCCCCCCHHHHHHHH-------HhcCCEEEEEEeecCCCCCccceEE-EEeCCHHHHHH
Q 023722 22 YTKVFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGRSKGYGF-VTFREPEAAMK 79 (278)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F-------~~fG~I~~v~i~~dk~tg~skG~aF-V~F~~~~~A~~ 79 (278)
.+.|.+-.|.+++++++++++. .+.-.|+++.+-++-.....--++| ++|+|.++.+.
T Consensus 21 I~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 21 IRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4455555678887777655444 3455788888877643211134554 58999887654
No 249
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.10 E-value=70 Score=31.45 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHH----hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023722 30 LAWETQKETMEKYFE----QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (278)
Q Consensus 30 Lp~~~tee~L~~~F~----~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~ 84 (278)
+..+.+--||+.+|- .+|-|+++.|...+. .+.+...++.|.|.+++.+++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 344444557888882 578899988765543 334567899999999999998876
No 250
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=21.46 E-value=2.4e+02 Score=20.55 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeEEEEEEcc
Q 023722 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (278)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (278)
++.-+.-++|.... ..||.-.++....+. -.|-..+.++.++|++.++....-+.|+|-+..
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~ 82 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILLLS 82 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhccCccccceEEEEEc
Confidence 45567777776655 579988888776442 567889999999999998644444555555543
No 251
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=20.40 E-value=1.8e+02 Score=18.58 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCccEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCC----HHHHHHHHHhcC
Q 023722 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEAAMKACVDAA 85 (278)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~----~~~A~~Ai~~~~ 85 (278)
....++.|.++.-..-...|++.+.+.-.|..+.+... .+-..|+|.. .+...++|+...
T Consensus 7 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 70 (79)
T 1kvi_A 7 VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDMG 70 (79)
T ss_dssp CEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHC
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 44567889898877777889999988877888777654 2357788753 456667776653
No 252
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.38 E-value=15 Score=29.39 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC
Q 023722 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (278)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~ 72 (278)
+|+.++|...|.|+ +..+ .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC-----CCCeeEEeeC
Confidence 44555565555443 3333 3789999875
No 253
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.17 E-value=1.6e+02 Score=23.53 Aligned_cols=50 Identities=8% Similarity=0.245 Sum_probs=32.8
Q ss_pred CCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 023722 29 GLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (278)
Q Consensus 29 nLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai 81 (278)
.++...+..+|++.+++ |+ +|..|..+.-+. +.. -++|++..-.+|.+..
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~K--KAyV~La~~~dAldvA 144 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GNK--KAYIRLAADSDSLTLA 144 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SCE--EEEEEECSSSCHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-CcE--EEEEEcCCCCcHHHHH
Confidence 36778999999988876 55 566775554432 322 3899997655555443
No 254
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.04 E-value=1.7e+02 Score=23.17 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=33.0
Q ss_pred ECCCCCCCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 023722 27 VGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (278)
Q Consensus 27 VgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~~~A~~Ai 81 (278)
|-.++.+.+..+|++.+++ |+ +|..|..+.-+. +.. -++|++..-.+|.+..
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~K--KAyV~L~~~~daldvA 136 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GTK--KAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SCE--EEEEEECTTCCHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cce--EEEEEeCCCCcHHHHH
Confidence 3346778899999988876 55 566765554432 222 3889997655554433
Done!