BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023723
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 145/337 (43%), Gaps = 77/337 (22%)
Query: 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVY-----ELNFGHRPYQAK 64
G + ++LE YSGIGGM + ++ + ++V A DIN AN VY E N +R Q +
Sbjct: 1 GMSHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQ-Q 59
Query: 65 RKPLSFRCQLLNNQLLRSP-SPLLGN----DD--------MTVITKHDQPDDS------- 104
P + ++ L+ P P N DD + +I DQ D+
Sbjct: 60 LTPQVIKKWNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMEN 119
Query: 105 -------------WDKLLESCDPVERFLEFSNSGDQVNTETGFLSTG------------- 138
DKL E + FL ++ N+ + T
Sbjct: 120 VKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRD 179
Query: 139 ---TAAVDDFG---AAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTK 192
T DFG + E +E D + FLVP ++ R DI Y SKR CCFTK
Sbjct: 180 EIITRLPKDFGVPHSLESIIEED---VDEKFLVPEKML-RCAKVFDICYKTSKRSCCFTK 235
Query: 193 SYYRYVKGTGSLL-------------ATVQPKNKGK--ASSLKEQHLRYFTPREVANLHS 237
+Y Y GTGS+ A Q + G+ KE LRYFTP+EV +
Sbjct: 236 AYTHYADGTGSIFTDKPREVVQKCYAAAAQNEIGGEKFVELFKELKLRYFTPKEVLMIMC 295
Query: 238 FPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 274
FP + P ++S++Q Y LLGNS+++ V++ LL+ LF
Sbjct: 296 FPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF 332
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 13/128 (10%)
Query: 160 IDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA 216
++ +L+P + R+ +DIV P +R CFTK Y Y++GTGS+L T VQ +N K+
Sbjct: 215 VNQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKS 274
Query: 217 S---SLKEQ-------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVV 266
S +EQ LRYFTP+E+ANL FP +F FP ++++QRY LLGNSL++ VV
Sbjct: 275 LTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 334
Query: 267 APLLQYLF 274
A L++ L+
Sbjct: 335 AKLIKILY 342
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK 64
E RVLE YSG+GGM ++L ++ + AQVV A D+N AN+VY+ NF H AK
Sbjct: 1 EPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAK 54
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 161 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPK--NKGKASS 218
+ + +P LI + G DIV D KR CCFTKSY + V+GTGS+ ++P KA
Sbjct: 206 ESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSIYCPIEPHFIPVKKAED 265
Query: 219 LKEQHLRYFTPREVANLHSFPGDFQFP-HHLSLRQRYALLGNSLSIAVVAPLLQYLF 274
L ++LRYFTP E+ +H F +F L+ +Q+Y LGNS+S V+A L++YLF
Sbjct: 266 LLNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLF 322
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVV-EAFDINDKANDVYELNF 56
V+EF+SGIGG+R S ++ ++ FDIN+ AN +Y NF
Sbjct: 13 VIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF 55
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 211 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 263
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 211 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 263
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 223 HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 274
H R TPRE A L FP F+F H++ + +GNS+S V +L+ L+
Sbjct: 315 HPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIVAEYILKGLY 364
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 13 RFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine
Dna Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex
With 13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase,
Dna And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The
Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms
A Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To
The Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing
A Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine
Dna Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 174 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 229
G VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 347 GFGYGXVYPNNPQSVTRTLSARYYKDGAEILIDRGWDXATGEKDFDDPLNQQHRPRRLTP 406
Query: 230 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 260
RE A L F PG+ +F +S Q Y GNS
Sbjct: 407 RECARLXGFEAPGEAKFRIPVSDTQAYRQFGNS 439
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 174 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 229
G VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 285 GFGYGXVYPNNPQSVTRTLSARYYKDGAEILIDRGWDXATGEKDFDDPLNQQHRPRRLTP 344
Query: 230 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 260
RE A L F PG+ +F +S Q Y GNS
Sbjct: 345 RECARLXGFEAPGEAKFRIPVSDTQAYRQFGNS 377
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58
VLE SG GGM L KA S V +F++ +D+ + N+ H
Sbjct: 109 VLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,667,782
Number of Sequences: 62578
Number of extensions: 357558
Number of successful extensions: 687
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 29
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)