BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023723
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1
Length = 330
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 142/319 (44%), Gaps = 59/319 (18%)
Query: 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLS---- 69
RVLE YSGIGGM Y+L A++ A +V A DIN +AN++Y LN G L+
Sbjct: 8 RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGKLAKHMDISTLTAKDF 67
Query: 70 --FRCQLL-------------NNQLLRSPS-----------PLLGNDDMTVITKHDQPDD 103
F C+L N + + P P + N ++ ++ Q +
Sbjct: 68 DAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFE 127
Query: 104 SWDKLLESCDPVER-----FLEFSNSGDQVNTETG---------FLSTGTAAVDDF---- 145
K E C V R +E S +Q N G ++DD
Sbjct: 128 E-SKAAEECRKVLRNCGYNLIEGILSPNQFNIPNSRSRWYGLARLNFKGEWSIDDVFQFS 186
Query: 146 GAAEETVEVDRC---VSIDH----FLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYV 198
A++ EV R + I+ ++V S++ +WG DIV PDS CCCFT+ Y V
Sbjct: 187 EVAQKEGEVKRIRDYLEIERDWSSYMVLESVLNKWGHQFDIVKPDSSSCCCFTRGYTHLV 246
Query: 199 KGTGSLLATVQPKNKGKASSLKEQ--HLRYFTPREVANLHSFPGDFQFPH-HLSLRQRYA 255
+G GS+L +N + LRYFT REVA L FP ++ +++ + Y
Sbjct: 247 QGAGSILQMSDHENTHEQFERNRMALQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYR 306
Query: 256 LLGNSLSIAVVAPLLQYLF 274
LLGNS+++ VV+ L+ L
Sbjct: 307 LLGNSINVKVVSYLISLLL 325
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2
SV=1
Length = 391
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 82/124 (66%), Gaps = 14/124 (11%)
Query: 163 FLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA-SS 218
FL P SL+ R+ +DIV P S+R CFTK Y RY++GTGS+L T VQ +N K+ +S
Sbjct: 267 FLPPKSLL-RYALLLDIVKPTSRRSMCFTKGYGRYIEGTGSVLQTTEDVQIENIYKSLTS 325
Query: 219 LKEQ---------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 269
L ++ LR+FTP+E+ANL FP +F FP +++QRY LLGNSL++ VVA L
Sbjct: 326 LSQEEKIMRLSMLQLRFFTPKEIANLLGFPPEFGFPEMTTVKQRYRLLGNSLNVHVVAKL 385
Query: 270 LQYL 273
++ L
Sbjct: 386 IKIL 389
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK 64
E R LE YSGIGGM +L ++ + AQVV A D+N AN+VY+ NF H AK
Sbjct: 2 EPLRALELYSGIGGMHQALRESCIPAQVVAAVDVNTVANEVYKYNFPHTQLLAK 55
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 13/128 (10%)
Query: 160 IDHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKNKGKA 216
++ +L+P + R+ +DIV P +R CFTK Y Y++GTGS+L T VQ +N K+
Sbjct: 263 VNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKS 322
Query: 217 S---SLKEQ-------HLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVV 266
S +EQ LRYFTP+E+ANL FP +F FP ++++QRY LLGNSL++ VV
Sbjct: 323 LTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 382
Query: 267 APLLQYLF 274
A L++ L+
Sbjct: 383 AKLIKILY 390
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK 64
E RVLE YSG+GGM ++L ++ + AQVV A D+N AN+VY+ NF H AK
Sbjct: 2 EPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAK 55
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 13/125 (10%)
Query: 162 HFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLAT---VQPKN------ 212
+L+P + R+ +DIV P S+R CFTK Y Y++GTGS+L T VQ +N
Sbjct: 265 QYLLPAKSLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLP 324
Query: 213 ----KGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAP 268
+ K + L LRYFTP+E+ANL FP +F FP +++QRY LLGNSL++ VV+
Sbjct: 325 DLPPEEKIAKLSMLKLRYFTPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSK 384
Query: 269 LLQYL 273
LL L
Sbjct: 385 LLTVL 389
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK 64
E RVLE YSGIGGM ++L ++ V A VV A D++ AN+VY+ NF H AK
Sbjct: 2 EPLRVLELYSGIGGMHHALRESRVPAHVVAAIDVSTVANEVYKHNFPHTHLLAK 55
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 77/129 (59%), Gaps = 19/129 (14%)
Query: 161 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ----------- 209
D +L+P L+ R+ +DIV P S+R CFTK Y Y++GTGS+L +
Sbjct: 264 DEYLLPPKLLLRYALLLDIVKPTSRRSMCFTKGYGSYIEGTGSVLQAAEDAQIENIYKSL 323
Query: 210 ----PKNK-GKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIA 264
P+ K K S LK LRYFTP+E+ANL FP +F FP +++QRY LLGNSL++
Sbjct: 324 PDLPPEEKIAKLSMLK---LRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVH 380
Query: 265 VVAPLLQYL 273
VVA LL L
Sbjct: 381 VVAKLLTVL 389
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58
E RVLE YSGIGGM ++L ++ + A VV A D+N AN+VY+ NF H
Sbjct: 2 EPLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPH 49
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum
GN=dnmA PE=1 SV=1
Length = 379
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 161 DHFLVPLSLIERWGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKA---- 216
+ + VP +L+ G DI DSK C TKSY ++++GTGS+ +Q N KA
Sbjct: 245 EKYKVPHNLLLSKGMLFDIKQKDSKTSNCVTKSYGKFIEGTGSI---IQMDNNFKADIND 301
Query: 217 -SSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275
SL LRYF+P+E+ LH FP +F+F L+ Q Y L+GNSL++ +V+ LL+ L +
Sbjct: 302 NKSLIPLKLRYFSPKEITRLHGFPEEFKFSPKLTTIQCYRLIGNSLNVKIVSELLKVLVS 361
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%)
Query: 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ 62
E RVLEFYSGIGGM Y L ++ V QV+++FDIN AN Y+ F Q
Sbjct: 2 EQLRVLEFYSGIGGMHYGLQESGVDFQVIQSFDINTNANLNYKYTFNEDSSQ 53
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 203 SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLS 262
S+ T+ + K + + +R TPRE A L FP FQF SL Y GNS+S
Sbjct: 342 SVSITLVSSDAHKIGVVHQNRIRRITPRECARLQGFPDSFQFHPKDSL--AYRQFGNSVS 399
Query: 263 IAVVAPLLQYLFAQA 277
+ VV ++ LF A
Sbjct: 400 VPVVKAVILDLFKSA 414
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 203 SLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLS 262
S+ T+ + K ++ R TPRE A L FP DF H + Y LGNS++
Sbjct: 342 SISITLTSSDAHKLGVVQNNVPRRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVT 399
Query: 263 IAVVAPLLQYLF 274
+ VV +++ LF
Sbjct: 400 VKVVEKVIEDLF 411
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 220 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275
K + R TPRE + L FP DF P +S Q Y GNS+++ V+ + + + +
Sbjct: 322 KGSNPRKITPREASRLQGFPSDFIIP--VSDTQAYKQFGNSVAVPVINAIAEKIIS 375
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 211 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 263
KN K KE R T RE A + FP DF F H+ SL Y ++GN++ +
Sbjct: 259 KNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIF-HYESLNDGYKMIGNAVPV 310
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 220 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLF 274
K ++ R TPRE A L FP +F P +S Q Y GNS+++ + + + +
Sbjct: 329 KNKNPRKITPREAARLQGFPENFIIP--VSDTQAYKEFGNSVAVPTIHAIAEKML 381
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
R ++ ++G+GG R +L A+ V + + + A +VYE+NFG +P
Sbjct: 11 GLRFIDLFAGLGGFRLAL--ESCGAECVYSNEWDKYAQEVYEMNFGEKP 57
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 219 LKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 269
L + R T RE A L FP FQF ++++RY +GN+++++V L
Sbjct: 1209 LHPEQDRVLTIRESARLQGFPDYFQFCG--TIKERYCQIGNAVAVSVSRAL 1257
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 225 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275
R TP E A L FP FQ P +S Q Y GNS+ + V+ + + + A
Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 225 RYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275
R TPRE A L FP F P +S Q + GNS+ ++V+ + Q + +
Sbjct: 259 RVLTPRECARLQGFPESFVIP--VSDCQAWRQFGNSVPVSVIRAIAQKMLS 307
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 196 RYVKGTGSLLATVQPKNKGKASS----LKEQH-LRYFTPREVANLHSFPGDFQFPHHLSL 250
+YV+ S + N G +K +H +R TPRE N +P DF P L+
Sbjct: 229 KYVRENKSNVCPTLTANMGTGGHNVPLVKTKHGIRKLTPRECFNFQGYPEDFILP-ELAP 287
Query: 251 RQRYALLGNSLSIAVVAPLLQYLF 274
Y GNS+ + V+ + + ++
Sbjct: 288 THLYKQAGNSVVVPVIRRIAENIY 311
>sp|Q59603|MTB1_NEIGO Modification methylase NgoBI OS=Neisseria gonorrhoeae GN=ngoBIM
PE=3 SV=2
Length = 317
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61
++ ++ +SGIGG+R K + +D A VYE NFG +P+
Sbjct: 2 YKTIDLFSGIGGIRLGFEKYGCTNVFSSEWD--KYARQVYEANFGEKPF 48
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 219 LKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 269
L + R T E A L FPG FQF H + + L+GNS++ V+ L
Sbjct: 372 LIPKRYRKITVSEAARLQGFPGSFQF--HSNQSANFRLIGNSVAPPVIVAL 420
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 211 KNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 263
KN K + KE R + RE A + FP F+F ++ SL Y ++GN++ +
Sbjct: 262 KNMYKFVAGKENLYRRLSIRECARIQGFPDTFKF-YYTSLEDGYKMVGNAVPV 313
>sp|P37367|ATA1_SYNY3 Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=pma1 PE=3 SV=2
Length = 905
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 15/106 (14%)
Query: 124 SGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPD 183
SGD+V + L VD+ E V V++ V + PL+ ER A
Sbjct: 150 SGDKVPADLRLLKVRNLQVDESALTGEAVPVEKAVELLPEETPLA--ERLNMA------- 200
Query: 184 SKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTP 229
+ S+ + +GTG ++AT G+ S E+ + TP
Sbjct: 201 ------YAGSFVTFGQGTGVVVATANATEMGQISQSMEKQVSLMTP 240
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 221 EQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 269
E LR F+ E+ L FP DF+ P +S Q Y GNS+++ ++ +
Sbjct: 345 ETGLRLFSELELKRLMGFPVDFKVP--VSRTQMYRQFGNSVAVPMIKAV 391
>sp|P15446|MTH2_HAEPA Modification methylase HpaII OS=Haemophilus parainfluenzae
GN=hpaIIM PE=1 SV=1
Length = 358
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 1 MEKDMCKNDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60
E + N E + ++ ++GIGG R ++ ++ + + + + +++A YE NFG P
Sbjct: 20 FEPESNPNLREKFTFIDLFAGIGGFRIAMQ--NLGGKCIFSSEWDEQAQKTYEANFGDLP 77
Query: 61 Y 61
Y
Sbjct: 78 Y 78
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 220 KEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSI 263
KE R T REVA + FP +F+F + ++ Y ++GN++ +
Sbjct: 272 KETLYRRMTVREVARIQGFPDNFKFIYQ-NVNDAYKMIGNAVPV 314
>sp|P0AED9|DCM_ECOLI DNA-cytosine methyltransferase OS=Escherichia coli (strain K12)
GN=dcm PE=1 SV=1
Length = 472
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 174 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 229
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 230 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 260
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P0AEE0|DCM_ECO57 DNA-cytosine methyltransferase OS=Escherichia coli O157:H7 GN=dcm
PE=3 SV=1
Length = 472
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 174 GSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKAS---SLKEQHL-RYFTP 229
G +VYP++ + T S Y G L+ G+ L +QH R TP
Sbjct: 345 GFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTP 404
Query: 230 REVANLHSF--PGDFQFPHHLSLRQRYALLGNS 260
RE A L F PG+ +F +S Q Y GNS
Sbjct: 405 RECARLMGFEAPGEAKFRIPVSDTQAYRQFGNS 437
>sp|P10596|INV4_YEASX Invertase 4 OS=Saccharomyces cerevisiae GN=SUC4 PE=2 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 123 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLV 165
N GD V+T T F++TG A G+ T VD ID F V
Sbjct: 490 NDGDVVSTNTYFMTTGNA----LGSVNMTTGVDNLFYIDKFQV 528
>sp|P10594|INV1_YEASX Invertase 1 OS=Saccharomyces cerevisiae GN=SUC1 PE=1 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 123 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLV 165
N GD V+T T F++TG A G+ T VD ID F V
Sbjct: 490 NDGDVVSTNTYFMTTGNA----LGSVNMTTGVDNLFYIDKFQV 528
>sp|P00724|INV2_YEAST Invertase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SUC2 PE=1 SV=1
Length = 532
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 123 NSGDQVNTETGFLSTGTAAVDDFGAAEETVEVDRCVSIDHFLV 165
N GD V+T T F++TG A G+ T VD ID F V
Sbjct: 490 NDGDVVSTNTYFMTTGNA----LGSVNMTTGVDNLFYIDKFQV 528
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,468,738
Number of Sequences: 539616
Number of extensions: 4428174
Number of successful extensions: 9041
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9006
Number of HSP's gapped (non-prelim): 49
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)