Query 023723
Match_columns 278
No_of_seqs 189 out of 1512
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 100.0 2.8E-55 6E-60 400.7 16.2 253 13-275 1-335 (335)
2 cd00315 Cyt_C5_DNA_methylase C 100.0 1E-54 2.2E-59 390.3 18.6 244 13-275 1-275 (275)
3 TIGR00675 dcm DNA-methyltransf 100.0 9.5E-55 2.1E-59 397.5 18.2 250 15-273 1-315 (315)
4 COG0270 Dcm Site-specific DNA 100.0 4.8E-54 1E-58 395.0 19.3 254 10-276 1-323 (328)
5 PRK10458 DNA cytosine methylas 100.0 2.4E-50 5.1E-55 382.4 22.3 257 10-275 86-454 (467)
6 KOG0919 C-5 cytosine-specific 100.0 2.7E-46 5.9E-51 318.3 5.4 264 10-274 1-337 (338)
7 PF13659 Methyltransf_26: Meth 97.8 5.6E-05 1.2E-09 58.3 6.3 74 13-88 2-83 (117)
8 PF03602 Cons_hypoth95: Conser 97.7 1.8E-05 3.9E-10 67.0 2.7 72 11-84 42-123 (183)
9 PF09445 Methyltransf_15: RNA 97.7 4.3E-05 9.3E-10 63.4 4.7 76 14-92 2-86 (163)
10 COG2263 Predicted RNA methylas 97.7 0.00011 2.3E-09 62.0 6.4 70 13-85 47-118 (198)
11 TIGR03704 PrmC_rel_meth putati 97.7 0.00012 2.6E-09 65.0 7.0 79 12-91 87-169 (251)
12 TIGR00537 hemK_rel_arch HemK-r 97.6 0.00046 1E-08 57.8 8.9 71 13-89 21-96 (179)
13 PF05175 MTS: Methyltransferas 97.5 0.00024 5.3E-09 59.2 6.2 73 11-84 31-107 (170)
14 TIGR00095 RNA methyltransferas 97.5 0.00015 3.3E-09 61.6 5.0 72 11-84 49-130 (189)
15 PRK10909 rsmD 16S rRNA m(2)G96 97.5 0.00019 4.2E-09 61.6 5.4 71 12-84 54-130 (199)
16 TIGR02085 meth_trns_rumB 23S r 97.4 0.00045 9.7E-09 64.9 7.8 69 13-84 235-309 (374)
17 PHA03412 putative methyltransf 97.3 0.00059 1.3E-08 59.9 6.9 74 12-87 50-126 (241)
18 TIGR00446 nop2p NOL1/NOP2/sun 97.2 0.0016 3.5E-08 58.2 8.9 78 12-90 72-155 (264)
19 COG2520 Predicted methyltransf 97.2 0.00048 1E-08 63.6 5.4 70 12-84 189-265 (341)
20 KOG3420 Predicted RNA methylas 97.2 0.00037 7.9E-09 56.4 3.5 71 11-84 48-123 (185)
21 COG0742 N6-adenine-specific me 97.2 0.00098 2.1E-08 56.4 6.1 74 10-85 42-124 (187)
22 PF02475 Met_10: Met-10+ like- 97.2 0.00051 1.1E-08 59.0 4.4 72 12-84 102-178 (200)
23 PRK10901 16S rRNA methyltransf 97.1 0.0025 5.4E-08 61.0 9.5 78 12-90 245-328 (427)
24 COG2890 HemK Methylase of poly 97.1 0.00086 1.9E-08 60.6 6.0 119 14-133 113-254 (280)
25 PRK15128 23S rRNA m(5)C1962 me 97.1 0.00079 1.7E-08 63.8 5.9 72 12-85 221-303 (396)
26 PRK03522 rumB 23S rRNA methylu 97.1 0.00078 1.7E-08 61.8 5.7 71 12-85 174-250 (315)
27 PRK11783 rlmL 23S rRNA m(2)G24 97.1 0.00071 1.5E-08 68.7 5.6 119 13-134 540-673 (702)
28 cd02440 AdoMet_MTases S-adenos 97.1 0.0017 3.7E-08 47.2 6.3 92 14-116 1-98 (107)
29 COG2265 TrmA SAM-dependent met 97.1 0.0017 3.8E-08 62.1 7.6 108 11-134 293-413 (432)
30 PHA03411 putative methyltransf 97.0 0.002 4.4E-08 57.8 6.7 75 13-90 66-141 (279)
31 PRK14904 16S rRNA methyltransf 97.0 0.0036 7.8E-08 60.2 8.8 79 12-93 251-336 (445)
32 PRK14902 16S rRNA methyltransf 96.9 0.0043 9.3E-08 59.6 8.8 78 13-91 252-336 (444)
33 PRK05031 tRNA (uracil-5-)-meth 96.9 0.002 4.4E-08 60.3 6.2 42 13-57 208-249 (362)
34 PRK14901 16S rRNA methyltransf 96.9 0.0041 8.8E-08 59.6 8.3 79 12-91 253-341 (434)
35 smart00650 rADc Ribosomal RNA 96.8 0.0038 8.3E-08 51.8 6.9 68 13-84 15-86 (169)
36 TIGR03533 L3_gln_methyl protei 96.8 0.0053 1.1E-07 55.6 7.9 76 12-90 122-204 (284)
37 TIGR00563 rsmB ribosomal RNA s 96.8 0.0079 1.7E-07 57.5 9.3 80 12-93 239-327 (426)
38 TIGR02143 trmA_only tRNA (urac 96.8 0.0021 4.6E-08 59.9 5.2 42 14-58 200-241 (353)
39 COG2264 PrmA Ribosomal protein 96.7 0.0043 9.4E-08 56.3 6.4 94 9-117 160-258 (300)
40 PRK13168 rumA 23S rRNA m(5)U19 96.6 0.0043 9.3E-08 59.6 6.6 72 12-86 298-378 (443)
41 PRK14967 putative methyltransf 96.6 0.0046 1E-07 53.7 5.9 73 12-88 37-114 (223)
42 PRK04338 N(2),N(2)-dimethylgua 96.5 0.005 1.1E-07 58.1 6.2 70 12-84 58-134 (382)
43 PRK09328 N5-glutamine S-adenos 96.5 0.0099 2.1E-07 52.9 7.8 77 11-90 108-190 (275)
44 TIGR01177 conserved hypothetic 96.5 0.0065 1.4E-07 56.1 6.7 73 12-88 183-261 (329)
45 TIGR00479 rumA 23S rRNA (uraci 96.5 0.0054 1.2E-07 58.6 6.3 106 13-134 294-413 (431)
46 PF06325 PrmA: Ribosomal prote 96.5 0.0032 6.9E-08 57.3 4.4 49 12-62 162-210 (295)
47 PRK14903 16S rRNA methyltransf 96.5 0.0078 1.7E-07 57.7 7.1 80 12-92 238-324 (431)
48 PRK11805 N5-glutamine S-adenos 96.4 0.0095 2.1E-07 54.5 7.2 74 13-89 135-215 (307)
49 TIGR00406 prmA ribosomal prote 96.3 0.013 2.8E-07 53.1 7.3 89 12-115 160-252 (288)
50 PF05958 tRNA_U5-meth_tr: tRNA 96.3 0.0047 1E-07 57.6 4.4 41 14-57 199-239 (352)
51 TIGR00308 TRM1 tRNA(guanine-26 96.3 0.0071 1.5E-07 56.9 5.6 71 12-84 45-123 (374)
52 COG4123 Predicted O-methyltran 96.3 0.0086 1.9E-07 53.0 5.7 72 12-84 45-124 (248)
53 KOG1227 Putative methyltransfe 96.3 0.0018 4E-08 58.2 1.5 46 13-60 196-242 (351)
54 TIGR00536 hemK_fam HemK family 96.1 0.02 4.4E-07 51.7 7.6 75 13-90 116-197 (284)
55 PF01170 UPF0020: Putative RNA 96.1 0.0056 1.2E-07 51.6 3.5 100 12-118 29-147 (179)
56 TIGR03534 RF_mod_PrmC protein- 96.1 0.022 4.8E-07 49.8 7.3 77 11-90 87-169 (251)
57 PF13847 Methyltransf_31: Meth 96.0 0.021 4.5E-07 46.3 6.4 93 11-115 3-103 (152)
58 PRK00517 prmA ribosomal protei 96.0 0.024 5.2E-07 50.2 7.2 107 11-134 119-231 (250)
59 PRK14966 unknown domain/N5-glu 95.9 0.02 4.4E-07 54.4 6.7 72 13-85 253-329 (423)
60 PRK09489 rsmC 16S ribosomal RN 95.9 0.02 4.4E-07 53.2 6.5 70 14-84 199-270 (342)
61 PRK14896 ksgA 16S ribosomal RN 95.8 0.024 5.3E-07 50.4 6.6 67 12-84 30-100 (258)
62 PRK14968 putative methyltransf 95.6 0.041 8.9E-07 45.7 6.8 71 12-87 24-102 (188)
63 PF12847 Methyltransf_18: Meth 95.5 0.044 9.4E-07 41.5 6.2 68 12-83 2-78 (112)
64 PF10672 Methyltrans_SAM: S-ad 95.5 0.023 4.9E-07 51.5 5.1 74 12-89 124-207 (286)
65 PRK00274 ksgA 16S ribosomal RN 95.5 0.033 7.1E-07 50.0 6.2 69 12-84 43-114 (272)
66 TIGR00755 ksgA dimethyladenosi 95.2 0.049 1.1E-06 48.2 6.1 44 11-57 29-72 (253)
67 PTZ00338 dimethyladenosine tra 95.1 0.059 1.3E-06 49.0 6.6 67 12-84 37-110 (294)
68 PRK01544 bifunctional N5-gluta 95.0 0.064 1.4E-06 52.5 6.9 77 12-89 139-220 (506)
69 PRK15001 SAM-dependent 23S rib 95.0 0.063 1.4E-06 50.6 6.5 70 13-85 230-308 (378)
70 TIGR02987 met_A_Alw26 type II 94.9 0.049 1.1E-06 53.5 5.8 79 11-89 31-126 (524)
71 TIGR00080 pimt protein-L-isoas 94.9 0.076 1.7E-06 45.7 6.4 74 12-86 78-157 (215)
72 PRK00121 trmB tRNA (guanine-N( 94.8 0.21 4.6E-06 42.6 8.9 103 11-116 40-150 (202)
73 KOG2904 Predicted methyltransf 94.7 0.069 1.5E-06 47.8 5.7 73 13-86 150-233 (328)
74 TIGR02021 BchM-ChlM magnesium 94.7 0.12 2.6E-06 44.4 7.3 97 11-120 55-155 (219)
75 PRK11933 yebU rRNA (cytosine-C 94.7 0.13 2.7E-06 50.0 7.8 83 11-93 113-201 (470)
76 COG3897 Predicted methyltransf 94.6 0.021 4.6E-07 48.6 2.2 77 12-91 80-158 (218)
77 TIGR02752 MenG_heptapren 2-hep 94.6 0.21 4.5E-06 43.2 8.6 97 12-120 46-151 (231)
78 PRK05785 hypothetical protein; 94.6 0.15 3.3E-06 44.4 7.6 95 12-121 52-146 (226)
79 TIGR03587 Pse_Me-ase pseudamin 94.6 0.11 2.4E-06 44.7 6.6 96 12-120 44-142 (204)
80 PRK08287 cobalt-precorrin-6Y C 94.5 0.11 2.5E-06 43.5 6.5 109 12-134 32-149 (187)
81 COG1092 Predicted SAM-dependen 94.2 0.082 1.8E-06 50.0 5.4 101 14-120 220-334 (393)
82 PF02005 TRM: N2,N2-dimethylgu 94.0 0.078 1.7E-06 49.9 4.7 45 11-57 49-95 (377)
83 PF02384 N6_Mtase: N-6 DNA Met 94.0 0.075 1.6E-06 48.3 4.5 76 11-88 46-138 (311)
84 COG0144 Sun tRNA and rRNA cyto 94.0 0.43 9.4E-06 44.6 9.7 83 12-94 157-248 (355)
85 PLN02672 methionine S-methyltr 93.9 0.1 2.3E-06 55.2 6.0 44 13-57 120-163 (1082)
86 PRK11727 23S rRNA mA1618 methy 93.9 0.18 3.8E-06 46.5 6.9 72 10-84 113-198 (321)
87 PRK07402 precorrin-6B methylas 93.9 0.11 2.4E-06 44.0 5.3 45 12-57 41-85 (196)
88 PRK11036 putative S-adenosyl-L 93.8 0.18 3.8E-06 44.6 6.4 95 11-118 44-145 (255)
89 PRK01683 trans-aconitate 2-met 93.6 0.5 1.1E-05 41.6 9.1 96 12-120 32-129 (258)
90 PRK07580 Mg-protoporphyrin IX 93.6 0.31 6.7E-06 41.9 7.5 70 11-84 63-136 (230)
91 PRK00312 pcm protein-L-isoaspa 93.6 0.29 6.2E-06 41.9 7.2 72 11-86 78-155 (212)
92 PF01209 Ubie_methyltran: ubiE 93.3 0.18 3.9E-06 44.3 5.6 98 11-120 47-153 (233)
93 COG1041 Predicted DNA modifica 93.2 0.31 6.7E-06 45.2 7.0 112 14-134 200-323 (347)
94 PLN02233 ubiquinone biosynthes 93.1 0.62 1.3E-05 41.5 8.9 97 12-120 74-182 (261)
95 PRK10258 biotin biosynthesis p 93.1 0.27 5.9E-06 43.1 6.5 91 12-116 43-134 (251)
96 PRK04148 hypothetical protein; 93.0 0.51 1.1E-05 37.9 7.3 68 12-83 17-85 (134)
97 PRK10742 putative methyltransf 93.0 0.25 5.3E-06 43.8 5.9 46 10-58 87-132 (250)
98 COG2226 UbiE Methylase involve 92.9 0.66 1.4E-05 40.9 8.5 99 11-121 51-157 (238)
99 COG3963 Phospholipid N-methylt 92.9 0.4 8.7E-06 40.0 6.5 80 12-91 49-133 (194)
100 TIGR02072 BioC biotin biosynth 92.5 0.6 1.3E-05 40.0 7.7 98 11-120 34-134 (240)
101 PRK00377 cbiT cobalt-precorrin 92.2 0.3 6.4E-06 41.5 5.3 109 12-134 41-163 (198)
102 COG2521 Predicted archaeal met 92.2 0.2 4.3E-06 44.0 4.1 114 11-134 134-270 (287)
103 COG2227 UbiG 2-polyprenyl-3-me 92.2 0.37 8E-06 42.4 5.8 97 11-120 59-159 (243)
104 PF08241 Methyltransf_11: Meth 92.1 0.33 7.2E-06 34.9 4.8 90 16-118 1-93 (95)
105 TIGR00417 speE spermidine synt 92.1 0.63 1.4E-05 41.6 7.5 71 13-84 74-154 (270)
106 PF00398 RrnaAD: Ribosomal RNA 92.1 0.4 8.6E-06 42.7 6.2 71 11-84 30-106 (262)
107 TIGR00477 tehB tellurite resis 92.0 0.66 1.4E-05 39.3 7.2 98 12-120 31-133 (195)
108 PRK15451 tRNA cmo(5)U34 methyl 92.0 0.47 1E-05 41.8 6.5 100 12-120 57-164 (247)
109 PF01189 Nol1_Nop2_Fmu: NOL1/N 91.6 0.28 6.1E-06 44.3 4.7 82 12-93 86-174 (283)
110 KOG2730 Methylase [General fun 91.6 0.19 4E-06 43.8 3.3 79 11-93 94-183 (263)
111 PF13649 Methyltransf_25: Meth 91.5 0.5 1.1E-05 35.2 5.3 65 15-81 1-73 (101)
112 PRK06202 hypothetical protein; 91.5 0.84 1.8E-05 39.6 7.5 99 10-120 59-165 (232)
113 PF02086 MethyltransfD12: D12 91.4 0.16 3.4E-06 44.7 2.8 40 11-53 20-59 (260)
114 COG0030 KsgA Dimethyladenosine 91.2 0.72 1.6E-05 41.2 6.8 93 12-120 31-129 (259)
115 PLN02585 magnesium protoporphy 91.2 0.45 9.7E-06 43.8 5.6 45 11-58 144-188 (315)
116 PRK13944 protein-L-isoaspartat 91.1 0.9 2E-05 38.8 7.2 72 12-85 73-152 (205)
117 TIGR02469 CbiT precorrin-6Y C5 91.1 0.68 1.5E-05 35.3 5.9 90 12-115 20-115 (124)
118 PRK00811 spermidine synthase; 91.1 0.55 1.2E-05 42.4 6.1 45 12-58 77-122 (283)
119 TIGR00478 tly hemolysin TlyA f 91.0 0.45 9.7E-06 41.7 5.2 39 11-51 75-113 (228)
120 PRK05134 bifunctional 3-demeth 90.7 0.71 1.5E-05 39.9 6.2 97 11-120 48-150 (233)
121 PRK00107 gidB 16S rRNA methylt 90.5 0.74 1.6E-05 39.0 5.9 87 12-115 46-138 (187)
122 PLN02336 phosphoethanolamine N 90.3 0.67 1.5E-05 44.8 6.3 93 12-115 38-135 (475)
123 COG2813 RsmC 16S RNA G1207 met 90.2 0.8 1.7E-05 41.7 6.2 70 14-84 161-233 (300)
124 PLN02244 tocopherol O-methyltr 90.2 1.9 4.1E-05 39.9 8.9 97 10-120 117-223 (340)
125 TIGR02081 metW methionine bios 90.1 0.54 1.2E-05 39.6 4.9 71 13-86 15-86 (194)
126 KOG3191 Predicted N6-DNA-methy 90.0 1 2.2E-05 38.1 6.2 77 12-90 44-125 (209)
127 TIGR01983 UbiG ubiquinone bios 89.8 1 2.2E-05 38.6 6.4 44 11-57 45-88 (224)
128 PRK12335 tellurite resistance 89.7 0.78 1.7E-05 41.4 5.8 93 13-116 122-217 (287)
129 PRK00216 ubiE ubiquinone/menaq 89.5 1.6 3.4E-05 37.4 7.4 98 12-120 52-158 (239)
130 PRK11207 tellurite resistance 89.5 0.75 1.6E-05 39.1 5.3 98 12-120 31-134 (197)
131 PHA01634 hypothetical protein 89.3 1.4 2.9E-05 35.3 6.0 70 11-82 28-99 (156)
132 PRK03612 spermidine synthase; 89.0 0.89 1.9E-05 44.7 6.1 44 12-56 298-341 (521)
133 PRK11188 rrmJ 23S rRNA methylt 88.9 0.67 1.5E-05 39.9 4.6 65 12-83 52-125 (209)
134 KOG2187 tRNA uracil-5-methyltr 88.9 1 2.2E-05 43.8 6.1 42 13-57 385-426 (534)
135 PRK13255 thiopurine S-methyltr 88.7 2.6 5.6E-05 36.6 8.2 39 12-53 38-76 (218)
136 PRK13942 protein-L-isoaspartat 88.7 2 4.3E-05 37.0 7.4 46 11-57 76-122 (212)
137 PTZ00098 phosphoethanolamine N 88.4 1.8 3.9E-05 38.6 7.1 98 11-120 52-156 (263)
138 TIGR00091 tRNA (guanine-N(7)-) 87.9 3.5 7.5E-05 34.8 8.3 104 11-117 16-127 (194)
139 PRK00050 16S rRNA m(4)C1402 me 87.7 1.5 3.3E-05 39.9 6.3 85 12-96 20-111 (296)
140 TIGR00138 gidB 16S rRNA methyl 87.5 1 2.2E-05 37.8 4.8 68 12-82 43-116 (181)
141 PRK11524 putative methyltransf 87.3 0.66 1.4E-05 41.9 3.7 46 9-57 206-251 (284)
142 PRK04266 fibrillarin; Provisio 87.1 1.5 3.2E-05 38.3 5.7 44 12-56 73-116 (226)
143 PLN02396 hexaprenyldihydroxybe 87.0 1.5 3.2E-05 40.5 5.8 96 11-120 131-234 (322)
144 PRK13699 putative methylase; P 86.9 0.75 1.6E-05 40.2 3.7 44 10-56 162-205 (227)
145 PRK08317 hypothetical protein; 86.5 2.7 5.8E-05 35.8 7.0 93 12-115 20-117 (241)
146 TIGR00740 methyltransferase, p 86.4 3.5 7.6E-05 35.8 7.8 102 11-120 53-161 (239)
147 PRK06922 hypothetical protein; 86.2 2.3 5.1E-05 42.8 7.1 106 12-120 419-537 (677)
148 PTZ00146 fibrillarin; Provisio 86.1 4.6 9.9E-05 36.8 8.4 96 12-120 133-236 (293)
149 KOG0820 Ribosomal RNA adenine 85.9 4.2 9.2E-05 36.6 7.8 78 9-89 56-137 (315)
150 TIGR01444 fkbM_fam methyltrans 85.5 1.7 3.7E-05 34.3 4.9 44 14-58 1-44 (143)
151 COG1867 TRM1 N2,N2-dimethylgua 85.2 1.3 2.7E-05 41.5 4.4 45 12-59 53-99 (380)
152 PRK14103 trans-aconitate 2-met 85.0 3.6 7.8E-05 36.2 7.2 96 11-120 29-125 (255)
153 PRK11783 rlmL 23S rRNA m(2)G24 84.7 3.4 7.4E-05 42.2 7.7 47 38-84 258-312 (702)
154 PLN02490 MPBQ/MSBQ methyltrans 84.5 5.4 0.00012 37.1 8.3 97 11-120 113-215 (340)
155 PLN02781 Probable caffeoyl-CoA 84.1 2.3 5E-05 37.2 5.4 50 12-61 69-118 (234)
156 TIGR03840 TMPT_Se_Te thiopurin 84.0 1.7 3.7E-05 37.6 4.5 38 12-52 35-72 (213)
157 KOG2078 tRNA modification enzy 83.7 0.64 1.4E-05 44.1 1.8 45 14-61 252-296 (495)
158 PF13489 Methyltransf_23: Meth 83.6 3 6.4E-05 33.2 5.6 92 9-120 20-114 (161)
159 PF05185 PRMT5: PRMT5 arginine 83.5 1.9 4.1E-05 41.6 5.1 69 11-81 186-264 (448)
160 PRK13943 protein-L-isoaspartat 83.0 4.9 0.00011 37.1 7.3 46 12-57 81-126 (322)
161 COG4076 Predicted RNA methylas 81.9 2.1 4.6E-05 36.5 4.0 40 14-56 35-74 (252)
162 KOG1122 tRNA and rRNA cytosine 81.8 5.5 0.00012 38.0 7.1 80 10-93 240-330 (460)
163 PF03291 Pox_MCEL: mRNA cappin 81.8 2.6 5.7E-05 39.0 5.1 44 11-56 62-105 (331)
164 TIGR01934 MenG_MenH_UbiE ubiqu 81.7 3.8 8.2E-05 34.6 5.8 99 11-120 39-143 (223)
165 PF01728 FtsJ: FtsJ-like methy 81.5 1.9 4E-05 35.8 3.7 37 11-47 23-59 (181)
166 PF10294 Methyltransf_16: Puta 80.4 3.4 7.4E-05 34.3 4.9 47 8-57 42-89 (173)
167 PF07021 MetW: Methionine bios 80.3 4.1 8.8E-05 34.8 5.3 69 12-83 14-83 (193)
168 PF11599 AviRa: RRNA methyltra 79.6 3.4 7.5E-05 35.9 4.7 50 9-59 49-100 (246)
169 PRK11088 rrmA 23S rRNA methylt 79.0 5.3 0.00012 35.6 6.0 91 12-120 86-179 (272)
170 KOG1500 Protein arginine N-met 78.9 5.2 0.00011 37.2 5.8 70 11-83 177-251 (517)
171 PF03848 TehB: Tellurite resis 78.9 5.5 0.00012 34.0 5.7 41 11-54 30-70 (192)
172 PF05401 NodS: Nodulation prot 77.6 6.8 0.00015 33.6 5.8 67 13-84 45-115 (201)
173 PLN02336 phosphoethanolamine N 76.9 7.6 0.00016 37.5 6.8 95 12-120 267-368 (475)
174 KOG1270 Methyltransferases [Co 76.6 3.3 7.2E-05 37.0 3.8 41 12-55 90-130 (282)
175 COG0116 Predicted N6-adenine-s 76.5 5.6 0.00012 37.5 5.5 68 38-111 256-329 (381)
176 PRK11705 cyclopropane fatty ac 76.0 8.1 0.00018 36.5 6.6 97 12-120 168-266 (383)
177 TIGR00438 rrmJ cell division p 75.3 3.3 7.1E-05 34.6 3.4 37 12-48 33-69 (188)
178 PF09243 Rsm22: Mitochondrial 75.0 19 0.0004 32.3 8.4 104 8-120 30-139 (274)
179 PLN03075 nicotianamine synthas 74.6 16 0.00034 33.4 7.8 99 11-119 123-230 (296)
180 PLN02366 spermidine synthase 73.1 14 0.00031 33.8 7.3 47 12-59 92-138 (308)
181 PRK01581 speE spermidine synth 72.8 11 0.00024 35.5 6.5 42 12-54 151-192 (374)
182 TIGR02716 C20_methyl_CrtF C-20 71.9 21 0.00046 32.2 8.1 98 12-120 150-254 (306)
183 COG2242 CobL Precorrin-6B meth 71.9 10 0.00022 32.2 5.4 44 13-57 36-79 (187)
184 TIGR03438 probable methyltrans 70.9 13 0.00029 33.7 6.5 101 12-120 64-176 (301)
185 KOG1499 Protein arginine N-met 70.9 8.8 0.00019 35.6 5.3 66 13-81 62-133 (346)
186 PRK15068 tRNA mo(5)U34 methylt 70.3 9.3 0.0002 35.1 5.4 95 12-120 123-225 (322)
187 smart00828 PKS_MT Methyltransf 70.2 16 0.00034 31.2 6.6 94 14-120 2-104 (224)
188 PRK04457 spermidine synthase; 68.4 13 0.00027 33.2 5.7 46 12-58 67-112 (262)
189 PRK14121 tRNA (guanine-N(7)-)- 65.3 18 0.00039 34.3 6.3 101 12-117 123-230 (390)
190 TIGR00452 methyltransferase, p 64.8 14 0.00031 33.9 5.4 95 12-120 122-224 (314)
191 COG3392 Adenine-specific DNA m 64.7 6.8 0.00015 35.1 3.1 40 14-56 30-72 (330)
192 PLN02476 O-methyltransferase 64.4 15 0.00033 33.2 5.4 50 12-61 119-168 (278)
193 PRK11760 putative 23S rRNA C24 64.4 14 0.00031 34.4 5.3 72 10-87 210-282 (357)
194 PF13679 Methyltransf_32: Meth 63.6 23 0.0005 28.1 5.9 81 9-90 23-114 (141)
195 PF01135 PCMT: Protein-L-isoas 62.6 14 0.0003 31.9 4.6 74 11-86 72-152 (209)
196 KOG2198 tRNA cytosine-5-methyl 61.3 17 0.00036 34.1 5.1 80 12-91 156-252 (375)
197 PLN02823 spermine synthase 57.1 32 0.0007 31.9 6.3 71 12-84 104-185 (336)
198 PRK11873 arsM arsenite S-adeno 56.4 24 0.00052 31.2 5.3 97 12-120 78-183 (272)
199 PF05724 TPMT: Thiopurine S-me 55.9 23 0.0005 30.7 4.9 40 11-53 37-76 (218)
200 COG2519 GCD14 tRNA(1-methylade 52.8 52 0.0011 29.3 6.6 110 10-134 93-213 (256)
201 PF08704 GCD14: tRNA methyltra 51.4 28 0.0006 30.9 4.7 50 12-61 41-90 (247)
202 COG0863 DNA modification methy 50.4 20 0.00044 31.8 3.8 48 8-58 219-266 (302)
203 PRK09496 trkA potassium transp 49.4 72 0.0016 30.2 7.7 100 18-133 235-343 (453)
204 KOG1271 Methyltransferases [Ge 49.3 19 0.0004 30.8 3.1 101 13-120 69-180 (227)
205 TIGR00006 S-adenosyl-methyltra 49.1 43 0.00093 30.7 5.7 43 13-56 22-64 (305)
206 PRK13256 thiopurine S-methyltr 48.5 72 0.0016 27.9 6.8 41 12-55 44-84 (226)
207 PF08242 Methyltransf_12: Meth 48.0 1.8 4E-05 31.8 -2.9 72 16-88 1-79 (99)
208 COG2230 Cfa Cyclopropane fatty 45.7 57 0.0012 29.6 5.9 45 12-59 73-118 (283)
209 smart00138 MeTrc Methyltransfe 41.8 47 0.001 29.5 4.7 46 10-55 98-151 (264)
210 PF05219 DREV: DREV methyltran 40.5 61 0.0013 29.1 5.1 43 9-54 92-134 (265)
211 TIGR00571 dam DNA adenine meth 39.7 26 0.00056 31.2 2.8 38 14-56 28-65 (266)
212 PF02353 CMAS: Mycolic acid cy 39.6 99 0.0021 27.7 6.5 46 12-60 63-109 (273)
213 COG1189 Predicted rRNA methyla 38.8 36 0.00078 30.1 3.4 35 10-46 78-112 (245)
214 PF04816 DUF633: Family of unk 36.6 1E+02 0.0022 26.4 5.9 44 15-59 1-44 (205)
215 PF01564 Spermine_synth: Sperm 34.8 74 0.0016 28.0 4.8 47 11-58 76-122 (246)
216 PF01488 Shikimate_DH: Shikima 33.7 1.2E+02 0.0026 23.8 5.5 65 20-88 18-88 (135)
217 COG1743 Adenine-specific DNA m 33.6 45 0.00097 34.5 3.5 45 10-57 89-133 (875)
218 PF02254 TrkA_N: TrkA-N domain 32.5 29 0.00063 26.0 1.7 88 18-121 2-96 (116)
219 COG2518 Pcm Protein-L-isoaspar 30.8 1.9E+02 0.0042 25.0 6.5 48 11-61 72-119 (209)
220 COG0421 SpeE Spermidine syntha 29.6 1.9E+02 0.0042 26.1 6.7 46 14-60 79-124 (282)
221 KOG2899 Predicted methyltransf 29.5 1.3E+02 0.0029 26.9 5.4 53 5-59 52-105 (288)
222 PF01210 NAD_Gly3P_dh_N: NAD-d 29.0 1.7E+02 0.0036 23.5 5.7 74 14-90 1-84 (157)
223 KOG1253 tRNA methyltransferase 28.5 26 0.00056 34.2 0.9 50 8-59 106-157 (525)
224 PF03078 ATHILA: ATHILA ORF-1 27.7 64 0.0014 31.3 3.4 43 223-265 139-184 (458)
225 COG0293 FtsJ 23S rRNA methylas 27.0 80 0.0017 27.2 3.5 36 12-48 46-82 (205)
226 PF08123 DOT1: Histone methyla 26.7 1.4E+02 0.003 25.6 5.0 40 12-53 43-83 (205)
227 KOG2671 Putative RNA methylase 26.3 29 0.00063 32.5 0.8 69 14-85 211-294 (421)
228 KOG1540 Ubiquinone biosynthesi 24.8 1.5E+02 0.0033 26.7 4.9 101 11-122 100-216 (296)
229 PRK10904 DNA adenine methylase 24.3 51 0.0011 29.4 2.0 38 13-55 29-66 (271)
230 KOG2361 Predicted methyltransf 24.0 66 0.0014 28.6 2.5 46 14-59 74-120 (264)
231 KOG3010 Methyltransferase [Gen 22.6 1.1E+02 0.0024 27.2 3.6 44 14-60 36-79 (261)
232 COG4106 Tam Trans-aconitate me 22.2 1.9E+02 0.0041 25.6 4.9 98 12-122 31-130 (257)
233 PF13877 RPAP3_C: Potential Mo 21.6 83 0.0018 23.0 2.4 43 233-275 15-58 (94)
234 PTZ00357 methyltransferase; Pr 20.6 3.8E+02 0.0082 27.9 7.2 42 12-54 701-747 (1072)
235 KOG1501 Arginine N-methyltrans 20.2 2.5E+02 0.0054 27.5 5.6 43 10-54 65-107 (636)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=2.8e-55 Score=400.69 Aligned_cols=253 Identities=22% Similarity=0.256 Sum_probs=164.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccccccccccccc-CCCEEEeCCCCCCCCcc
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQL-LNNQLLRSPSPLLGNDD 91 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~-~~Dll~~g~PCq~fS~a 91 (278)
||++|||||+||+++||++|| |++++|+|+|+.|++||++||| .....|+..++....+ ++|||+||||||+||.+
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~a 77 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPKDVDLLIGGPPCQGFSIA 77 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHHT-SEEEEE---TTTSTT
T ss_pred CcEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-ccccccccccccccccccceEEEeccCCceEecc
Confidence 689999999999999999999 8999999999999999999999 3333333334444555 79999999999999999
Q ss_pred cccCCCCCCCCchHHHHhhh---cCCcEEEEE-eCC---Cc--------cchhhccCc------eeccCcccCcccc-cc
Q 023723 92 MTVITKHDQPDDSWDKLLES---CDPVERFLE-FSN---SG--------DQVNTETGF------LSTGTAAVDDFGA-AE 149 (278)
Q Consensus 92 g~~~g~~d~r~~l~~~~i~~---~~P~~~i~E-v~~---~~--------~~~l~~~GY------l~A~~~~~~dfGv-Q~ 149 (278)
|++++.+|+|+.||++++++ .+|++|||| |++ +. ++.|+++|| |||+ +||+ |+
T Consensus 78 g~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~-----~yGvPQ~ 152 (335)
T PF00145_consen 78 GKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAA-----DYGVPQN 152 (335)
T ss_dssp STHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGG-----GGTSSBE
T ss_pred ccccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhccccHh-----hCCCCCc
Confidence 99999999999999998775 899999999 653 21 788999999 8999 9999 99
Q ss_pred cccc--ccccccc--------ccCCCChhh-hhcCCccccccCCC-----------------------------CCCc--
Q 023723 150 ETVE--VDRCVSI--------DHFLVPLSL-IERWGSAMDIVYPD-----------------------------SKRC-- 187 (278)
Q Consensus 150 r~~f--l~~~~~~--------~~~~~p~~~-~~~~~~~~d~~~~~-----------------------------~~~~-- 187 (278)
|+|+ ++.+.+. ....+|... ........|+.... ....
T Consensus 153 R~R~fivg~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (335)
T PF00145_consen 153 RERVFIVGIRKDLPLPPPFPIPKFDFPEPKDPTVSDAIRDLPDEPSPKDEDKYNFSDRVIEDLNRIRNNTIKPGKGIPNK 232 (335)
T ss_dssp -EEEEEEEEEGGG--TSSCCGTTEEC-SSCG-SHHHHHGGGSTSCCECCCCCGBHSHCHHCSHCCSHHHHHHHCCCCSTH
T ss_pred eeeEEEEEECCCCCcccccccccccccccccccceeeEeecccccccccccccccchhhhhhhccccccccccccchhhh
Confidence 9984 3333221 011111100 00000011111000 0000
Q ss_pred ------------ccccccceecccCCCceeeecCCC--CCCC---CccccCCcccccCHHHHHHhCCCCCCcccCCCCCH
Q 023723 188 ------------CCFTKSYYRYVKGTGSLLATVQPK--NKGK---ASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSL 250 (278)
Q Consensus 188 ------------~~~~~~y~r~~~~~~s~~~~~~~~--~~~~---~~~~~~~~~R~lT~rE~~rLqgFPd~~~~~~~~s~ 250 (278)
......|++..+.......+.... .... ...+||.+.|.|||||+||||||||+|.|.+ +.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~R~LT~rE~aRLqgFPd~~~f~g--~~ 310 (335)
T PF00145_consen 233 ISRNRIDKIEDLKGPSRTYRRSGRGEKMPPQIPTTGSTGKNGHRFRPFIHPEQNRRLTPREAARLQGFPDDFKFPG--SK 310 (335)
T ss_dssp EECTSTTTTCECTTTCTCCTTSCTCC-BCCCCCSTSTTTTTHEHCCTEBTTSSSCB-BHHHHHHHTTSSTTS-S-S--SH
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccCCccccccCCCCCCcCcHHHHHHhCCCCCceEccC--CH
Confidence 000111111111000000000000 0000 1258999999999999999999999999999 78
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHHh
Q 023723 251 RQRYALLGNSLSIAVVAPLLQYLFA 275 (278)
Q Consensus 251 ~~~~~~iGNaVp~~v~~~i~~~l~~ 275 (278)
+++|+||||||||+|+++|+++|++
T Consensus 311 ~~~~~qiGNAVpp~v~~~I~~~i~~ 335 (335)
T PF00145_consen 311 TQQYKQIGNAVPPPVAEAIAKAIKK 335 (335)
T ss_dssp HHHHHHHHCS--HHHHHHHHHHHH-
T ss_pred HHHhceECCCcCHHHHHHHHHHhhC
Confidence 8999999999999999999999974
No 2
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=1e-54 Score=390.33 Aligned_cols=244 Identities=27% Similarity=0.374 Sum_probs=182.4
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccccccccccc-ccCCCEEEeCCCCCCCCcc
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRC-QLLNNQLLRSPSPLLGNDD 91 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~-~~~~Dll~~g~PCq~fS~a 91 (278)
++++|||||+||+++||+++| +++++++|+|+.|+++|++||++..+..|+..+...+ .+++|+|+||||||+||.+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred CcEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 589999999999999999999 7999999999999999999999876555544444433 5689999999999999999
Q ss_pred cccCCCCCCCCchHHHHhhh---cCCcEEEEE-eCC---Cc--------cchhhccCc------eeccCcccCcccc-cc
Q 023723 92 MTVITKHDQPDDSWDKLLES---CDPVERFLE-FSN---SG--------DQVNTETGF------LSTGTAAVDDFGA-AE 149 (278)
Q Consensus 92 g~~~g~~d~r~~l~~~~i~~---~~P~~~i~E-v~~---~~--------~~~l~~~GY------l~A~~~~~~dfGv-Q~ 149 (278)
|++++.+|+|+.||++++++ .+|++|++| |+. ++ ++.|+++|| |||+ +||+ |+
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~-----~~GvPQ~ 153 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNAS-----DYGVPQN 153 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHH-----HcCCCCC
Confidence 99999999999999987765 899999999 543 11 788899999 9999 9999 99
Q ss_pred cccc--cccccccc-cCCC--ChhhhhcCCcccccc---CCCCCCcccccccceecccCCCceeeecCCCCCCCCccccC
Q 023723 150 ETVE--VDRCVSID-HFLV--PLSLIERWGSAMDIV---YPDSKRCCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKE 221 (278)
Q Consensus 150 r~~f--l~~~~~~~-~~~~--p~~~~~~~~~~~d~~---~~~~~~~~~~~~~y~r~~~~~~s~~~~~~~~~~~~~~~~~~ 221 (278)
|+|+ +..+.+.. .+.. |.. .....++.|.+ .++. .+.|++..|++ ++++.... ......|+
T Consensus 154 R~R~~~ia~~~~~~~~~~~~~p~~-~~~~~t~~d~l~~~~~~~-~~~ti~~~~~~---~~~~~~~~------~~~~~~~~ 222 (275)
T cd00315 154 RERVFIIGIRKDLILNFFSPFPKP-SEKKKTLKDILRIRDPDE-PSPTLTASYGK---GTGSVHPT------APDMIGKE 222 (275)
T ss_pred CcEEEEEEEeCCCCccccccCCCC-CCCCCcHHHHHhhhcCCC-CccceecCCCC---CccccccC------cccccccC
Confidence 9985 33333211 1111 221 11222333332 1221 22334433332 11111000 00113577
Q ss_pred CcccccCHHHHHHhCCCCCCcccCCCCCHHHHHHHcCCccCHHHHHHHHHHHHh
Q 023723 222 QHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275 (278)
Q Consensus 222 ~~~R~lT~rE~~rLqgFPd~~~~~~~~s~~~~~~~iGNaVp~~v~~~i~~~l~~ 275 (278)
...|+||+||+||||||||+|.|.+. +.+++|+||||||||+++++|+++|++
T Consensus 223 ~~~R~lT~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i~~ 275 (275)
T cd00315 223 SNIRRLTPRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAIKE 275 (275)
T ss_pred CCCCCCCHHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHHhC
Confidence 88999999999999999999999875 899999999999999999999999863
No 3
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.5e-55 Score=397.45 Aligned_cols=250 Identities=22% Similarity=0.255 Sum_probs=184.8
Q ss_pred EEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCCCCCCCCccccc
Q 023723 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSPSPLLGNDDMTV 94 (278)
Q Consensus 15 v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ag~~ 94 (278)
|+|||||+||+++||++|| +++++|+|+|+.|++||++|||+..+..|+.+++..+.+++|||+||||||+||.+|++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~~ 78 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGNKVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGKR 78 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCCCCCccChhhhhhhhCCCcCEEEecCCCcccchhccc
Confidence 6899999999999999999 79999999999999999999998555455444554456789999999999999999999
Q ss_pred CCCCCCCCchHHHHhhh---cCCcEEEEE-eCC---Cc--------cchhhccCc------eeccCcccCcccc-ccccc
Q 023723 95 ITKHDQPDDSWDKLLES---CDPVERFLE-FSN---SG--------DQVNTETGF------LSTGTAAVDDFGA-AEETV 152 (278)
Q Consensus 95 ~g~~d~r~~l~~~~i~~---~~P~~~i~E-v~~---~~--------~~~l~~~GY------l~A~~~~~~dfGv-Q~r~~ 152 (278)
++.+|+|+.||++++++ .+|++|++| |+. +. +..|+++|| |||+ |||+ |+|+|
T Consensus 79 ~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~-----dyGvPQ~R~R 153 (315)
T TIGR00675 79 KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAK-----DFGVPQNRER 153 (315)
T ss_pred CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHH-----HCCCCCCccE
Confidence 99999999999987775 799999999 642 11 778899999 8999 9999 99998
Q ss_pred c--cccc-cc-cccCCCChhhh-hcCCccccccCCC-----------------------CC----CcccccccceecccC
Q 023723 153 E--VDRC-VS-IDHFLVPLSLI-ERWGSAMDIVYPD-----------------------SK----RCCCFTKSYYRYVKG 200 (278)
Q Consensus 153 f--l~~~-~~-~~~~~~p~~~~-~~~~~~~d~~~~~-----------------------~~----~~~~~~~~y~r~~~~ 200 (278)
+ +..+ .. ...+.+|.... ..+..+.|++... .. ....+...|.+..++
T Consensus 154 ~f~ia~r~~~~~~~~~~p~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (315)
T TIGR00675 154 IYIVGFRDFDDKLNFEFPKPIYVAKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKS 233 (315)
T ss_pred EEEEEEeCCCcCcCCCCCCCcccccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCcc
Confidence 4 3433 21 12344443310 1111122221100 00 001122234455555
Q ss_pred CCceeeecCCC---CC-C-------CCccccCCcccccCHHHHHHhCCCCCCcccCCCCCHHHHHHHcCCccCHHHHHHH
Q 023723 201 TGSLLATVQPK---NK-G-------KASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNSLSIAVVAPL 269 (278)
Q Consensus 201 ~~s~~~~~~~~---~~-~-------~~~~~~~~~~R~lT~rE~~rLqgFPd~~~~~~~~s~~~~~~~iGNaVp~~v~~~i 269 (278)
.++.+++.... .. . ....+||.+.|.||+||+||||||||+|.|.+ |.+++|+||||||||+|+++|
T Consensus 234 ~~~~~i~~~~~~~~~~~~t~~~~~~~~~~~hp~~~R~lT~RE~aRLQ~FPd~f~f~~--s~~~~~~qiGNAVPp~la~~I 311 (315)
T TIGR00675 234 SIIRTLSARGYTFVKGGKSVLIVPHKSTVVHPGRIRRLTPRECARLQGFPDDFKFPV--SDSQLYKQAGNAVVVPVIEAI 311 (315)
T ss_pred ceeeeeeccccccCCCCcceeeccccceeccCCceeeCCHHHHHHHcCCCcccEeCC--CHHHHHhhhCCcccHHHHHHH
Confidence 55556554111 00 0 01227999999999999999999999999997 899999999999999999999
Q ss_pred HHHH
Q 023723 270 LQYL 273 (278)
Q Consensus 270 ~~~l 273 (278)
+++|
T Consensus 312 ~~~i 315 (315)
T TIGR00675 312 AKQI 315 (315)
T ss_pred HhhC
Confidence 9864
No 4
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-54 Score=394.97 Aligned_cols=254 Identities=21% Similarity=0.220 Sum_probs=191.1
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-cccccccccccccc--CCCEEEeCCCCC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-YQAKRKPLSFRCQL--LNNQLLRSPSPL 86 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~~~~~~~~~~~~~~--~~Dll~~g~PCq 86 (278)
+.+++++||||||||+++||+.|| |++++|+|||+.|++||++||++.. +..++..+...... ++|+|+||||||
T Consensus 1 ~~~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ 78 (328)
T COG0270 1 NEKMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQ 78 (328)
T ss_pred CCCceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCc
Confidence 457999999999999999999999 8999999999999999999999543 33333323332222 899999999999
Q ss_pred CCCcccccCCCCCCCCchHHHHhhh---cCCcEEEEE-eCC---C---c----cchhhccCc------eeccCcccCccc
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLES---CDPVERFLE-FSN---S---G----DQVNTETGF------LSTGTAAVDDFG 146 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~---~~P~~~i~E-v~~---~---~----~~~l~~~GY------l~A~~~~~~dfG 146 (278)
+||.||++++.+|+|+.||++++|+ .+|++||+| |++ + . +++|+++|| |||+ |||
T Consensus 79 ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~-----dyG 153 (328)
T COG0270 79 DFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAA-----DYG 153 (328)
T ss_pred chhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHH-----hcC
Confidence 9999999999999999999998775 899999999 653 3 1 889999999 8999 999
Q ss_pred c-ccccccc--cccc-c-cccCCC-Chhh----------hh-------------c---------CCc--cccccCC-CCC
Q 023723 147 A-AEETVEV--DRCV-S-IDHFLV-PLSL----------IE-------------R---------WGS--AMDIVYP-DSK 185 (278)
Q Consensus 147 v-Q~r~~fl--~~~~-~-~~~~~~-p~~~----------~~-------------~---------~~~--~~d~~~~-~~~ 185 (278)
+ |+|+|++ +... . ...... +... +. . ... ....... ...
T Consensus 154 vPQ~ReRvfiig~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (328)
T COG0270 154 VPQSRERVFIVGFRRDNIDLDPNVLPPLPLGRKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKNKGERLPSLRWGE 233 (328)
T ss_pred CCCCccEEEEEEecCccccccccccCccccccccchhhhhhhccCcchhhhhccccccccccccCchhhhcccccccccc
Confidence 9 9999852 2221 0 000000 0000 00 0 000 0000000 000
Q ss_pred C-----cccccccceecccCCCceeeecCCCCCCCCccccCCcccccCHHHHHHhCCCCCCcccCCCCCHHHHHHHcCCc
Q 023723 186 R-----CCCFTKSYYRYVKGTGSLLATVQPKNKGKASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYALLGNS 260 (278)
Q Consensus 186 ~-----~~~~~~~y~r~~~~~~s~~~~~~~~~~~~~~~~~~~~~R~lT~rE~~rLqgFPd~~~~~~~~s~~~~~~~iGNa 260 (278)
. ...-...|.|+.+..+++|++.. .....+|+...|.||+||++|||||||+|.|.+ |.+++|+|||||
T Consensus 234 ~~~~~~~~~~~~~~~rl~~~~~~~t~~~~----~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGns 307 (328)
T COG0270 234 ALTLSRRYKGKGSYIRLHPDKPAPTVRGG----GNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNS 307 (328)
T ss_pred ccccccccCCCceeEeCCCCCCCceeecC----CCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCc
Confidence 0 00013457788888888888722 245678999999999999999999999999999 999999999999
Q ss_pred cCHHHHHHHHHHHHhh
Q 023723 261 LSIAVVAPLLQYLFAQ 276 (278)
Q Consensus 261 Vp~~v~~~i~~~l~~~ 276 (278)
|||+++++|++.|.+.
T Consensus 308 Vp~~l~~~ia~~i~~~ 323 (328)
T COG0270 308 VPPLLAEAIAKAILKK 323 (328)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999864
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=2.4e-50 Score=382.44 Aligned_cols=257 Identities=22% Similarity=0.267 Sum_probs=175.7
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC---CCC-cccccccccc---------------
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG---HRP-YQAKRKPLSF--------------- 70 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~---~~~-~~~~~~~~~~--------------- 70 (278)
...++++||||||||+++||+.+| +++|+++|||+.|++||++||+ +.. +..|+..+..
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhh
Confidence 447999999999999999999999 6999999999999999999994 222 3333222221
Q ss_pred -ccccCCCEEEeCCCCCCCCcccccC--------CC-CCCCCchHHHHhhh---cCCcEEEEE-eC---CCc--------
Q 023723 71 -RCQLLNNQLLRSPSPLLGNDDMTVI--------TK-HDQPDDSWDKLLES---CDPVERFLE-FS---NSG-------- 125 (278)
Q Consensus 71 -~~~~~~Dll~~g~PCq~fS~ag~~~--------g~-~d~r~~l~~~~i~~---~~P~~~i~E-v~---~~~-------- 125 (278)
...+++|||+||||||+||.||+++ |+ +|+|+.||++++|+ .+|++||+| |+ +++
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlENV~gl~s~~~g~~f~~i 243 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHDKGKTFRII 243 (467)
T ss_pred hccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEeCcHhhhcccccHHHHHH
Confidence 1346899999999999999999653 34 37899999997775 899999999 65 332
Q ss_pred cchhhccCc-e--------------eccCcccCcccc-cccccc--ccccccc---ccCCC-------------------
Q 023723 126 DQVNTETGF-L--------------STGTAAVDDFGA-AEETVE--VDRCVSI---DHFLV------------------- 165 (278)
Q Consensus 126 ~~~l~~~GY-l--------------~A~~~~~~dfGv-Q~r~~f--l~~~~~~---~~~~~------------------- 165 (278)
++.|+++|| + ||+ +| + |+|+|+ ++.+.+. ..|.+
T Consensus 244 ~~~L~~lGY~v~~~~~~g~~~~~vlna~-----~f-VPQ~R~RvfiVg~r~~~~~~~~f~~~~~~~~~p~~~~~l~diL~ 317 (467)
T PRK10458 244 MQTLDELGYDVADAEDNGPDDPKIIDGK-----HF-LPQHRERIVLVGFRRDLNLKADFTLRDISECYPAQRPTLAELLD 317 (467)
T ss_pred HHHHHHcCCeEEeccccCcccceEeehh-----hC-CCccCcEEEEEEEeCCcccccCcccccccccCCCCCCCHHHhcC
Confidence 888899999 2 455 89 9 999884 3333220 01211
Q ss_pred ---------Chhhhh---c---------CCccccccCCCCCCcccccccceecccCCCceeeecC-CCCCCCCccccC--
Q 023723 166 ---------PLSLIE---R---------WGSAMDIVYPDSKRCCCFTKSYYRYVKGTGSLLATVQ-PKNKGKASSLKE-- 221 (278)
Q Consensus 166 ---------p~~~~~---~---------~~~~~d~~~~~~~~~~~~~~~y~r~~~~~~s~~~~~~-~~~~~~~~~~~~-- 221 (278)
+++... + .+..++++.+....+.+.+.++ ++.++....++..+ ....+.....|+
T Consensus 318 ~~~~~ky~ls~~~~~~l~~~~~k~~~~g~g~~~~i~~~~~~~~~~~t~~~-ry~k~gs~~~i~~~~~~~~~~~~~~~~~~ 396 (467)
T PRK10458 318 PVVDAKYILTPVLWKYLYRYAKKHQAKGNGFGYGLVYPNNPQSVTRTLSA-RYYKDGSEILIDRGWDMALGEKDFDDPEN 396 (467)
T ss_pred CCCCcceeeCHHHHHHHHHHHhhccccCCCcceeeeecCCCCCccccccc-ccccCCCceeeeccccccccccccccccc
Confidence 111000 0 0112333333333333444333 55555333333221 111111222233
Q ss_pred --CcccccCHHHHHHhCCC--CCCcccCCCCCHHHHHHHcCCccCHHHHHHHHHHHHh
Q 023723 222 --QHLRYFTPREVANLHSF--PGDFQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275 (278)
Q Consensus 222 --~~~R~lT~rE~~rLqgF--Pd~~~~~~~~s~~~~~~~iGNaVp~~v~~~i~~~l~~ 275 (278)
...|+||||||+||||| |++|.|...+|.+++|+|+||||||+|+++|++.|..
T Consensus 397 ~~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~ 454 (467)
T PRK10458 397 QQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEP 454 (467)
T ss_pred ccCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 35899999999999999 6667776667999999999999999999999999875
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=100.00 E-value=2.7e-46 Score=318.34 Aligned_cols=264 Identities=35% Similarity=0.505 Sum_probs=216.1
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-c-cc-c-ccccccccccCCCEEEeCCCC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-Y-QA-K-RKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~-~~-~-~~~~~~~~~~~~Dll~~g~PC 85 (278)
+++++|++|+||.||++.+|+.|.|+.++|+|+|+++.|+++|+.| ++.. . .. + .+++++.+..++|+|++||||
T Consensus 1 ~~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-~h~~L~k~~~I~~lt~kefd~l~~~m~lMSPpC 79 (338)
T KOG0919|consen 1 TMPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-YHSNLVKTRNIQSLTVKEFDKLQANMLLMSPPC 79 (338)
T ss_pred CCceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-cccchhhccccceeeHhhhhhcccceEeeCCCC
Confidence 4589999999999999999999999999999999999999999999 4443 2 22 2 345666677889999999999
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhh-----cCCcEEEEE-eCC---Cc-----cchhhccCc------eecc-----Cc
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLES-----CDPVERFLE-FSN---SG-----DQVNTETGF------LSTG-----TA 140 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~-----~~P~~~i~E-v~~---~~-----~~~l~~~GY------l~A~-----~~ 140 (278)
|||++.|.+++..|+|+..|.+++.. .-|+++++| |++ +. ++.|+++|| |... ..
T Consensus 80 QPfTRiG~q~D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S~ar~~~i~~lencGf~~~EfiLsPtqfniPNs 159 (338)
T KOG0919|consen 80 QPFTRIGLQRDTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESSQARNQFIESLENCGFHWREFILSPTQFNIPNS 159 (338)
T ss_pred CchhhhcccccccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhhhHHHHHHHHHHhcCchhhheeccccccCCCCc
Confidence 99999999999999999999998886 469999999 654 33 888999998 2111 00
Q ss_pred ccC---------ccc--------------c--cc------cccccccccccccCCCChhhhhcCCccccccCCCCCCccc
Q 023723 141 AVD---------DFG--------------A--AE------ETVEVDRCVSIDHFLVPLSLIERWGSAMDIVYPDSKRCCC 189 (278)
Q Consensus 141 ~~~---------dfG--------------v--Q~------r~~fl~~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~ 189 (278)
..+ +|. . |+ +++||+...+...|.+|++.+.+|+-.+||+.|.+.++.|
T Consensus 160 R~Ryy~iArl~~~F~~~G~~s~d~~~qFseiaqk~g~Vk~i~d~lE~~~d~s~ylvp~~vL~k~~l~~DIv~P~~srs~C 239 (338)
T KOG0919|consen 160 RYRYYCIARLGADFPFAGGKSWDEMPQFSEIAQKQGLVKQIADILEENVDPSDYLVPDDVLTKRVLVMDIVHPAQSRSMC 239 (338)
T ss_pred chheeehhhhCCCCCCCCCcccccccchHHHHHhcchHHHHHHHHHhcCCHHHccCCHHHHHHhHhheeecccccccceE
Confidence 001 221 0 11 2356766666678999999999999999999999999999
Q ss_pred ccccceecccCCCceeeecCCCC-----CC--------CCccccCCcccccCHHHHHHhCCCCCCcccCCCCCHHHHHHH
Q 023723 190 FTKSYYRYVKGTGSLLATVQPKN-----KG--------KASSLKEQHLRYFTPREVANLHSFPGDFQFPHHLSLRQRYAL 256 (278)
Q Consensus 190 ~~~~y~r~~~~~~s~~~~~~~~~-----~~--------~~~~~~~~~~R~lT~rE~~rLqgFPd~~~~~~~~s~~~~~~~ 256 (278)
|+++|+++..++||.+.+...-. .+ +...+|..+.|+|||||.|||||||++|.|+.+++.++.|++
T Consensus 240 FTkGYthy~eGtGSilq~~~~i~~eN~~~s~~~~~~~~~~~~l~~l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRL 319 (338)
T KOG0919|consen 240 FTKGYTHYTEGTGSILQLVKEIDTENQDASKSEKILQQRLDLLHQLRLRYFTPREVARLMGFPENFEFPPETTNKQKYRL 319 (338)
T ss_pred eecCccceeecchHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHH
Confidence 99999999999999876654211 11 124567788999999999999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHH
Q 023723 257 LGNSLSIAVVAPLLQYLF 274 (278)
Q Consensus 257 iGNaVp~~v~~~i~~~l~ 274 (278)
+|||+.|.|+..+++-|.
T Consensus 320 LGNSiNVkVV~~LIklL~ 337 (338)
T KOG0919|consen 320 LGNSINVKVVGELIKLLT 337 (338)
T ss_pred hcCcccceeHHHHHHHhc
Confidence 999999999999988664
No 7
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.81 E-value=5.6e-05 Score=58.34 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=54.5
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccc-cccccCCCEEEeCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLS-FRCQLLNNQLLRSPS 84 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~-~~~~~~~Dll~~g~P 84 (278)
.+|+|+|||.|.+.+.+.+.| ...+.++|+|+.+++.-+.|++.... ..+..... ......+|++++.||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999988 46889999999999999999876532 12211111 234578999999999
Q ss_pred CCCC
Q 023723 85 PLLG 88 (278)
Q Consensus 85 Cq~f 88 (278)
.-+.
T Consensus 80 ~~~~ 83 (117)
T PF13659_consen 80 YGPR 83 (117)
T ss_dssp TTSB
T ss_pred Cccc
Confidence 8543
No 8
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.74 E-value=1.8e-05 Score=67.02 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=46.6
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccc-------c-ccccccc--cccCCCEEE
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQA-------K-RKPLSFR--CQLLNNQLL 80 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-------~-~~~~~~~--~~~~~Dll~ 80 (278)
+.-+|||||||.|.+.+=+-.-| .+.|..||.++.|+++.++|.......+ + ...+... ....+|++.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 45789999999999887555557 5889999999999999999986444222 1 1111111 246899999
Q ss_pred eCCC
Q 023723 81 RSPS 84 (278)
Q Consensus 81 ~g~P 84 (278)
.-||
T Consensus 120 lDPP 123 (183)
T PF03602_consen 120 LDPP 123 (183)
T ss_dssp E--S
T ss_pred ECCC
Confidence 9999
No 9
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.73 E-value=4.3e-05 Score=63.39 Aligned_cols=76 Identities=17% Similarity=0.053 Sum_probs=47.2
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------ccccccc-ccccccC-CCEEEeCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPL-SFRCQLL-NNQLLRSPS 84 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~-~~~~~~~-~Dll~~g~P 84 (278)
+++|+|||+||-+..|-+.+ +.|.|+|+|+..++..++|-.---+ ..|...+ ....... +|++..+||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 58999999999999999985 7899999999999999999532211 2221111 1111122 799999999
Q ss_pred CCCCCccc
Q 023723 85 PLLGNDDM 92 (278)
Q Consensus 85 Cq~fS~ag 92 (278)
--+-|-..
T Consensus 79 WGGp~Y~~ 86 (163)
T PF09445_consen 79 WGGPSYSK 86 (163)
T ss_dssp BSSGGGGG
T ss_pred CCCccccc
Confidence 88766544
No 10
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00011 Score=62.01 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=54.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc-ccccccc-ccCCCEEEeCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR-KPLSFRC-QLLNNQLLRSPSP 85 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~-~~~~~~~-~~~~Dll~~g~PC 85 (278)
-+|+||.||+|-+++|....| .+.|.++|+|+.|.++.+.|-+. ...+.. ...+..+ ..++|.++.-||=
T Consensus 47 ~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCC
Confidence 369999999999999999999 68999999999999999999876 111111 0011111 2578999999994
No 11
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.66 E-value=0.00012 Score=65.04 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=54.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC---ccccccc-cccccccCCCEEEeCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP---YQAKRKP-LSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~---~~~~~~~-~~~~~~~~~Dll~~g~PCq~ 87 (278)
..+++|||||.|.+++.+....- ...|.++|+++.|++..+.|..... +..+... +.......+|+++..|||.+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 45899999999999988765421 2367899999999999999974321 2222211 11101246999999999998
Q ss_pred CCcc
Q 023723 88 GNDD 91 (278)
Q Consensus 88 fS~a 91 (278)
.+..
T Consensus 166 ~~~~ 169 (251)
T TIGR03704 166 TDAI 169 (251)
T ss_pred chhh
Confidence 7643
No 12
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.57 E-value=0.00046 Score=57.78 Aligned_cols=71 Identities=20% Similarity=0.032 Sum_probs=53.4
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-----cccccccccccccCCCEEEeCCCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-----QAKRKPLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-----~~~~~~~~~~~~~~~Dll~~g~PCq~ 87 (278)
-+++|+.||.|.++..+...| . .|.++|+++.+.+.-+.|...... ..+... .....+|+++.+||+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG--K-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC--C-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 479999999999999999988 2 789999999999998888643221 111111 11347999999999976
Q ss_pred CC
Q 023723 88 GN 89 (278)
Q Consensus 88 fS 89 (278)
.+
T Consensus 95 ~~ 96 (179)
T TIGR00537 95 LE 96 (179)
T ss_pred Cc
Confidence 54
No 13
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.49 E-value=0.00024 Score=59.18 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=51.6
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc---cc-cccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR---KP-LSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~---~~-~~~~~~~~~Dll~~g~P 84 (278)
..-+++||.||.|.+++.+...+- -..|.++|+++.|.+.-+.|.......... .+ .+......+|+|+..||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccc
Confidence 456899999999999999988874 235899999999999999998654432110 00 12222468999999999
No 14
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.49 E-value=0.00015 Score=61.64 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=51.4
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc-------ccccc-cccc-c-ccCCCEEE
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ-------AKRKP-LSFR-C-QLLNNQLL 80 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-------~~~~~-~~~~-~-~~~~Dll~ 80 (278)
+.-+|+|||||.|.+.+.+-..| ...|.++|+++.|++..+.|....... .+... +... . ...+|+++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 34589999999999999998888 468999999999999999997543322 12111 1111 1 12378999
Q ss_pred eCCC
Q 023723 81 RSPS 84 (278)
Q Consensus 81 ~g~P 84 (278)
.-||
T Consensus 127 ~DPP 130 (189)
T TIGR00095 127 LDPP 130 (189)
T ss_pred ECcC
Confidence 8888
No 15
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.47 E-value=0.00019 Score=61.57 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=49.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|||||||.|.+++.+...| ...|.++|+++.|++..+.|...... ..+....-......+|+++.-||
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4589999999999998644445 35789999999999999998643321 12211100011235899999999
No 16
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.43 E-value=0.00045 Score=64.95 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=49.8
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
-+++|||||+|.+++.+...| ..|.++|+++.|++.-+.|.....+ ..+...........+|+++.-||
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 489999999999999887666 5789999999999999998744322 11211111111135899999999
No 17
>PHA03412 putative methyltransferase; Provisional
Probab=97.35 E-value=0.00059 Score=59.92 Aligned_cols=74 Identities=14% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCC--CceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccccccccCCCEEEeCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADV--SAQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~--~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~~~~~~~~Dll~~g~PCq~ 87 (278)
..+|||++||.|.+.+.+...-. +-..|.++|+|+.|++.-+.|.+...+ ..+...... ...+|+|++-||=-.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~--~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF--DTLFDMAISNPPFGK 126 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc--cCCccEEEECCCCCC
Confidence 46999999999999998765310 013789999999999999999876542 333222221 247999999999544
No 18
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.25 E-value=0.0016 Score=58.24 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=52.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc------ccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.-+|+|+|||.||.++.+...--+--.|+|+|+++...+..+.|.....+. .+..... .....+|.++.-+||
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLDAPC 150 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEcCCC
Confidence 358999999999999876542100127899999999999999887543221 1111111 112469999999999
Q ss_pred CCCCc
Q 023723 86 LLGND 90 (278)
Q Consensus 86 q~fS~ 90 (278)
.+.-.
T Consensus 151 sg~G~ 155 (264)
T TIGR00446 151 SGEGV 155 (264)
T ss_pred CCCcc
Confidence 75433
No 19
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00048 Score=63.58 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=52.3
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccc-------cccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQA-------KRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-------~~~~~~~~~~~~~Dll~~g~P 84 (278)
.=+|+|+|||+|-+++-+-..|- .+ |+|+|+||.|++..+.|..-..+.+ |...+.. ..+.+|=+++|-|
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~-~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-~~~~aDrIim~~p 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGR-PK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-ELGVADRIIMGLP 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCC-ce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh-ccccCCEEEeCCC
Confidence 45899999999999999999994 23 9999999999999999985443332 1111111 1257899999888
No 20
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.00037 Score=56.43 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc-----ccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK-----RKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~-----~~~~~~~~~~~~Dll~~g~P 84 (278)
+..+++||.||+|-++.|+...+ .+.|.++|||+.|.+++..|-..-.++.+ +.+. ....+-+|..+.-||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl-e~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL-ELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch-hccCCeEeeEEecCC
Confidence 45688999999999999999998 58999999999999999999765554433 2221 122367888888888
No 21
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.00098 Score=56.38 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc-------ccccc-cc-cccccCCCEEE
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ-------AKRKP-LS-FRCQLLNNQLL 80 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-------~~~~~-~~-~~~~~~~Dll~ 80 (278)
.+.-++||||||.|++.+=.-.-| ...+..+|.|..|.++.+.|....... .+... +. ......+|++.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 566799999999998765444456 578899999999999999996543311 11110 01 11223599999
Q ss_pred eCCCC
Q 023723 81 RSPSP 85 (278)
Q Consensus 81 ~g~PC 85 (278)
.-||=
T Consensus 120 lDPPy 124 (187)
T COG0742 120 LDPPY 124 (187)
T ss_pred eCCCC
Confidence 99994
No 22
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.16 E-value=0.00051 Score=59.01 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc--ccccc---ccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR--KPLSF---RCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~--~~~~~---~~~~~~Dll~~g~P 84 (278)
.=+|+|+|||+|.+++-+-..+- ...|+|+|+||.|.+..+.|-.-..+.+.+ ...+. .....+|-++++.|
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred ceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 44899999999999988876321 478999999999999999986433322211 01111 11346788888887
No 23
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.15 E-value=0.0025 Score=60.99 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=54.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-----ccccccccc-ccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-----QAKRKPLSF-RCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-----~~~~~~~~~-~~~~~~Dll~~g~PC 85 (278)
.-+|+|+|||.|+.++.+...+-. ..|.++|+++.+.+..+.|...... ..+...... .....+|.++..+||
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 458999999999999888776521 4789999999999999998754321 122111111 112469999999999
Q ss_pred CCCCc
Q 023723 86 LLGND 90 (278)
Q Consensus 86 q~fS~ 90 (278)
.+...
T Consensus 324 s~~G~ 328 (427)
T PRK10901 324 SATGV 328 (427)
T ss_pred Ccccc
Confidence 76433
No 24
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00086 Score=60.60 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=75.8
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc--ccc-cccccccCCCEEEeCCCCCCCCc
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK--RKP-LSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~--~~~-~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
+|+|+++|.|.+++++...+. .-.|.|+|+++.|+++-+.|-........ ... +-..-.+.+|+|+.-||=-+-+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence 899999999999999999874 24889999999999999999765543111 111 11111248999999999888772
Q ss_pred ccccCC--CCCCCCc---------hHHHHhh----hcCC-cEEEEEeC--CCc--cchhhccC
Q 023723 91 DMTVIT--KHDQPDD---------SWDKLLE----SCDP-VERFLEFS--NSG--DQVNTETG 133 (278)
Q Consensus 91 ag~~~g--~~d~r~~---------l~~~~i~----~~~P-~~~i~Ev~--~~~--~~~l~~~G 133 (278)
.....+ ..++... .+..+++ ..+| .++++|.. ... .+.|.+.|
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~ 254 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTG 254 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcC
Confidence 211110 0122211 2223433 3677 78889932 211 56666777
No 25
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.13 E-value=0.00079 Score=63.76 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=51.8
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc--------ccccccc-ccc--cccCCCEEE
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY--------QAKRKPL-SFR--CQLLNNQLL 80 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~--------~~~~~~~-~~~--~~~~~Dll~ 80 (278)
.-+|||||||.|++++.+...| ...|.++|+++.|.+..+.|+....+ ..|.... ... ....+|+++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 3589999999999988766666 46889999999999999998753222 1221111 111 124699999
Q ss_pred eCCCC
Q 023723 81 RSPSP 85 (278)
Q Consensus 81 ~g~PC 85 (278)
.-||+
T Consensus 299 lDPP~ 303 (396)
T PRK15128 299 MDPPK 303 (396)
T ss_pred ECCCC
Confidence 99997
No 26
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.13 E-value=0.00078 Score=61.80 Aligned_cols=71 Identities=10% Similarity=0.184 Sum_probs=51.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.-+|+|||||.|.+++.+...| ..|.++|+++.|++.-+.|.....+ ..+...........+|+++.-||+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 4689999999999999988876 5789999999999999888643221 122111111112358999999994
No 27
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.11 E-value=0.00071 Score=68.67 Aligned_cols=119 Identities=11% Similarity=0.041 Sum_probs=72.4
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc--------ccccccccccccCCCEEEeCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ--------AKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~--------~~~~~~~~~~~~~~Dll~~g~P 84 (278)
-+|||||||.|++++.+...| ...|.++|+++.|++.-+.|+....+. .|..+.-......+|+|+.-||
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 489999999999999999988 467999999999999999998533222 2211110001247999999999
Q ss_pred CCCCCcccccCCCCCCC--CchHHHHhhhcCCc-EEEEE--eCCCc--cchhhccCc
Q 023723 85 PLLGNDDMTVITKHDQP--DDSWDKLLESCDPV-ERFLE--FSNSG--DQVNTETGF 134 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r--~~l~~~~i~~~~P~-~~i~E--v~~~~--~~~l~~~GY 134 (278)
.-.-+...... ....+ ..++....+.++|. .++++ ..... ...+.+.||
T Consensus 618 ~f~~~~~~~~~-~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~ 673 (702)
T PRK11783 618 TFSNSKRMEDS-FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGL 673 (702)
T ss_pred CCCCCCccchh-hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCC
Confidence 75533221000 00011 11333345557885 55667 11111 555556666
No 28
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.10 E-value=0.0017 Score=47.23 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=58.9
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC---CCC---ccccccccccccccCCCEEEeCCCCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG---HRP---YQAKRKPLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~---~~~---~~~~~~~~~~~~~~~~Dll~~g~PCq~ 87 (278)
+++|+.||.|++...+.... ...+.++|+++.+....+.+.. ... +..+...........+|+++..++|..
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 57999999999998887744 4688999999999888773221 111 112211111123467999999999987
Q ss_pred CCcccccCCCCCCCCchHHHHhhhcCCcE
Q 023723 88 GNDDMTVITKHDQPDDSWDKLLESCDPVE 116 (278)
Q Consensus 88 fS~ag~~~g~~d~r~~l~~~~i~~~~P~~ 116 (278)
+ .+....++..+.+..+|.-
T Consensus 79 ~---------~~~~~~~l~~~~~~l~~~g 98 (107)
T cd02440 79 L---------VEDLARFLEEARRLLKPGG 98 (107)
T ss_pred h---------hhHHHHHHHHHHHHcCCCC
Confidence 7 1222234444555567743
No 29
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0017 Score=62.06 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=67.8
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc------ccccc--cccccccCCCEEEeC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKP--LSFRCQLLNNQLLRS 82 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~--~~~~~~~~~Dll~~g 82 (278)
..-+++|||||+|.+++.+-.. +.-|.++|+++.|++.-+.|-....+. ++... ........+|.++.-
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 3468999999999999999754 478999999999999999986544322 11111 111123578999999
Q ss_pred CCCCCCCcccccCCCCCCCCchHHHHhhhcCCcEEE-EE--eCCCc--cchhhccCc
Q 023723 83 PSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERF-LE--FSNSG--DQVNTETGF 134 (278)
Q Consensus 83 ~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i-~E--v~~~~--~~~l~~~GY 134 (278)
|| |+|.+ .-+.+.+....|+.++ += ..+.. +..|.+.||
T Consensus 370 PP---------R~G~~----~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 370 PP---------RAGAD----REVLKQLAKLKPKRIVYVSCNPATLARDLAILASTGY 413 (432)
T ss_pred CC---------CCCCC----HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhCCe
Confidence 99 44443 2344444445565433 22 11111 556666666
No 30
>PHA03411 putative methyltransferase; Provisional
Probab=96.98 E-value=0.002 Score=57.80 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=54.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccccccccCCCEEEeCCCCCCCCc
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
-+|||++||.|.+.+.+....- ...|.++|+++.+++.-+.|++...+ ..+..... ....+|+|++.||-.....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE--SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc--ccCCCcEEEEcCCccccCc
Confidence 4899999999999877754320 14789999999999999999875442 33332221 1247999999999776443
No 31
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.96 E-value=0.0036 Score=60.18 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=54.7
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCcc------ccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|||+|||.||.++-+... +- .-.|+++|+++...+..+.|.....+. .+.... .....+|+++..+|
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~--~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQN-RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF--SPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc--ccCCCCCEEEEcCC
Confidence 358999999999988765442 11 237899999999999998887543221 111111 12246999999999
Q ss_pred CCCCCcccc
Q 023723 85 PLLGNDDMT 93 (278)
Q Consensus 85 Cq~fS~ag~ 93 (278)
|.+.....+
T Consensus 328 csg~g~~~r 336 (445)
T PRK14904 328 CTGTGVLGR 336 (445)
T ss_pred CCCcchhhc
Confidence 988776554
No 32
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.91 E-value=0.0043 Score=59.64 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=53.3
Q ss_pred CeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCcc------ccccccccccccCCCEEEeCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
-+|+|+|||.|+.++.+... +- --.|.++|+++.+.+..+.|.....+. .+.......-...+|+++..+||
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~-~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKN-TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 57999999999999877653 11 237899999999999999887433221 22111110001469999999999
Q ss_pred CCCCcc
Q 023723 86 LLGNDD 91 (278)
Q Consensus 86 q~fS~a 91 (278)
.+....
T Consensus 331 sg~G~~ 336 (444)
T PRK14902 331 SGLGVI 336 (444)
T ss_pred CCCeee
Confidence 865443
No 33
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.89 E-value=0.002 Score=60.29 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=36.8
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
-+++|||||.|.+++.+.+.. ..|.++|+++.|++..+.|..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHH
Confidence 369999999999999887753 689999999999999999863
No 34
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.87 E-value=0.0041 Score=59.64 Aligned_cols=79 Identities=11% Similarity=-0.031 Sum_probs=53.3
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCcc------cccccccc---ccccCCCEEEe
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKPLSF---RCQLLNNQLLR 81 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~~~~---~~~~~~Dll~~ 81 (278)
.-+|+|+|||.||.++.+... +- --.|.|+|+++...+..+.|.....+. .+...... .....+|.++.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGD-QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCC-CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 358999999999999877653 21 127899999999999998887533221 12111110 11236999999
Q ss_pred CCCCCCCCcc
Q 023723 82 SPSPLLGNDD 91 (278)
Q Consensus 82 g~PCq~fS~a 91 (278)
.+||.+....
T Consensus 332 DaPCSg~G~~ 341 (434)
T PRK14901 332 DAPCSGLGTL 341 (434)
T ss_pred eCCCCccccc
Confidence 9999874433
No 35
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.84 E-value=0.0038 Score=51.77 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC----ccccccccccccccCCCEEEeCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~----~~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
-+++|++||.|.++.-+...+ ..+.++|+|+.+++..++|+.... +..+...... ....+|.+++.+|
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~-~~~~~d~vi~n~P 86 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDL-PKLQPYKVVGNLP 86 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCc-cccCCCEEEECCC
Confidence 489999999999999887775 478999999999999999986421 1222222211 1124799999877
No 36
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.78 E-value=0.0053 Score=55.56 Aligned_cols=76 Identities=21% Similarity=0.195 Sum_probs=54.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
..+|+|++||.|.+...+....- --.|.++|+++.|++.-+.|.....+ ..+.. +......+|+++.-||
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~--~~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF--AALPGRKYDLIVSNPP 198 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--hccCCCCccEEEECCC
Confidence 46899999999999999887542 23688999999999999998643322 11111 1112236999999999
Q ss_pred CCCCCc
Q 023723 85 PLLGND 90 (278)
Q Consensus 85 Cq~fS~ 90 (278)
+.+.+.
T Consensus 199 y~~~~~ 204 (284)
T TIGR03533 199 YVDAED 204 (284)
T ss_pred CCCccc
Confidence 977553
No 37
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.76 E-value=0.0079 Score=57.52 Aligned_cols=80 Identities=13% Similarity=0.022 Sum_probs=56.1
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCcc-------cccccccc-ccccCCCEEEeC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQ-------AKRKPLSF-RCQLLNNQLLRS 82 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-------~~~~~~~~-~~~~~~Dll~~g 82 (278)
.-+|+|+|||.||.++-+.+. + --.|.|+|+++...+..+.|.....+. .+...... .....+|.++..
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 358999999999999877653 3 137899999999999999987533221 11111110 123469999999
Q ss_pred CCCCCCCcccc
Q 023723 83 PSPLLGNDDMT 93 (278)
Q Consensus 83 ~PCq~fS~ag~ 93 (278)
+||.++...++
T Consensus 317 aPcSg~G~~~~ 327 (426)
T TIGR00563 317 APCSATGVIRR 327 (426)
T ss_pred CCCCCCccccc
Confidence 99998766554
No 38
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.75 E-value=0.0021 Score=59.92 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=36.9
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
+++|||||.|.+++.+.+.. ..|.++|+++.|++..+.|...
T Consensus 200 ~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred cEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH
Confidence 59999999999999887654 5899999999999999999743
No 39
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0043 Score=56.31 Aligned_cols=94 Identities=15% Similarity=-0.014 Sum_probs=64.9
Q ss_pred CCCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc----cccccc-ccccCCCEEEeCC
Q 023723 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK----RKPLSF-RCQLLNNQLLRSP 83 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~----~~~~~~-~~~~~~Dll~~g~ 83 (278)
..+..+|||+=||.|-++.+..+.| ...|.++|+|+.|+++-+.|.....+... ...... ....++|+|++--
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 3467899999999999999999999 68899999999999999999754433211 111111 1224788888632
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhhcCCcEE
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPVER 117 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~ 117 (278)
+.+.-..|..++.+.++|--.
T Consensus 238 -------------LA~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 238 -------------LAEVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred -------------hHHHHHHHHHHHHHHcCCCce
Confidence 222333566667777888433
No 40
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.64 E-value=0.0043 Score=59.62 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=51.2
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccc-ccc--ccccCCCEEEeC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKP-LSF--RCQLLNNQLLRS 82 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~-~~~--~~~~~~Dll~~g 82 (278)
.-+++|||||.|.+++.+...+ ..|.++|+++.|++.-+.|.....+ ..+... +.. .....+|+++.-
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 3589999999999999987776 5788999999999999988642211 222111 111 112358999999
Q ss_pred CCCC
Q 023723 83 PSPL 86 (278)
Q Consensus 83 ~PCq 86 (278)
||+.
T Consensus 375 PPr~ 378 (443)
T PRK13168 375 PPRA 378 (443)
T ss_pred cCCc
Confidence 9974
No 41
>PRK14967 putative methyltransferase; Provisional
Probab=96.59 E-value=0.0046 Score=53.71 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=51.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-----ccccccccccccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-----YQAKRKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-----~~~~~~~~~~~~~~~~Dll~~g~PCq 86 (278)
.-+++|++||.|.++..+...| ...|.++|+++.+.+.-+.|..... +..+.. +......+|+++..||-.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~--~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWA--RAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchh--hhccCCCeeEEEECCCCC
Confidence 3589999999999988887777 4578999999999988888764321 112211 112234799999998754
Q ss_pred CC
Q 023723 87 LG 88 (278)
Q Consensus 87 ~f 88 (278)
+-
T Consensus 113 ~~ 114 (223)
T PRK14967 113 PA 114 (223)
T ss_pred CC
Confidence 43
No 42
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.55 E-value=0.005 Score=58.08 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCeEEeeecchhhHHHHHH-hcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLM-KADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~-~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
..+++|+|||+|.+++-+. .+| ...|+++|+++.|++..+.|.....+ ..|...+-. ....+|+++.-||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~-~~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH-EERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh-hcCCCCEEEECCC
Confidence 3589999999999998874 456 46799999999999999998743222 122111000 0346899999886
No 43
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.53 E-value=0.0099 Score=52.92 Aligned_cols=77 Identities=25% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
...+++|++||.|.+...+....- -..+.++|+++.+++.-+.|...... ..+.. +......+|+++..||
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~--~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF--EPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc--CcCCCCceeEEEECCC
Confidence 457899999999999988877642 24789999999999999999761111 11111 1111247999999999
Q ss_pred CCCCCc
Q 023723 85 PLLGND 90 (278)
Q Consensus 85 Cq~fS~ 90 (278)
+-+.+.
T Consensus 185 y~~~~~ 190 (275)
T PRK09328 185 YIPEAD 190 (275)
T ss_pred cCCcch
Confidence 977654
No 44
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.52 E-value=0.0065 Score=56.05 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=50.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.-+++|.|||.|++...+...| ..+.++|+++.+...-+.|...... ..|...... ....+|+++.-|||
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~-~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL-SSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc-ccCCCCEEEECCCC
Confidence 4589999999999977666666 4678999999998888888643221 122111111 12478999999998
Q ss_pred CCC
Q 023723 86 LLG 88 (278)
Q Consensus 86 q~f 88 (278)
...
T Consensus 259 g~~ 261 (329)
T TIGR01177 259 GRS 261 (329)
T ss_pred cCc
Confidence 543
No 45
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.50 E-value=0.0054 Score=58.64 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=66.2
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccc-cccc--cccCCCEEEeCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKP-LSFR--CQLLNNQLLRSP 83 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~-~~~~--~~~~~Dll~~g~ 83 (278)
-+++|||||.|.+++.+...+ ..|.++|+++.+++.-+.|.....+ ..+... +... ....+|+++..|
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 589999999999999988765 5789999999999999998743221 222111 1111 113589999999
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhhcCCcEEEEE-e--CCC--ccchhhccCc
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE-F--SNS--GDQVNTETGF 134 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E-v--~~~--~~~~l~~~GY 134 (278)
|.. |.. ..+.+.+...+|+-++.- - .+. ++..|.+.||
T Consensus 371 Pr~---------G~~----~~~l~~l~~l~~~~ivyvsc~p~tlard~~~l~~~gy 413 (431)
T TIGR00479 371 PRK---------GCA----AEVLRTIIELKPERIVYVSCNPATLARDLEFLCKEGY 413 (431)
T ss_pred CCC---------CCC----HHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHCCe
Confidence 932 211 223333444677665544 1 111 1556667788
No 46
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.49 E-value=0.0032 Score=57.29 Aligned_cols=49 Identities=27% Similarity=0.202 Sum_probs=41.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ 62 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~ 62 (278)
.-+|||+=||.|-++++..+.| .+.|.|+|+|+.|+++-+.|.....+.
T Consensus 162 g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~N~~~ 210 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAELNGVE 210 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred CCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHHcCCC
Confidence 3599999999999999999999 688999999999999999997544433
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.46 E-value=0.0078 Score=57.67 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=54.6
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCcc------ccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|||+|||.||.++.+... +- --.|.|+|+++...+..+.|.....+. .+...+.......+|.++.-+|
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~-~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKD-QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCC
Confidence 358999999999988766543 11 137899999999999999997543221 1111111111246999999999
Q ss_pred CCCCCccc
Q 023723 85 PLLGNDDM 92 (278)
Q Consensus 85 Cq~fS~ag 92 (278)
|.++-...
T Consensus 317 Csg~G~~~ 324 (431)
T PRK14903 317 CTSLGTAR 324 (431)
T ss_pred CCCCcccc
Confidence 98775543
No 48
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.44 E-value=0.0095 Score=54.53 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=53.2
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.+++|++||.|.+++.+....- ...|.++|+++.|.+.-++|...... ..+.. +......+|+++..||+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~--~~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF--AALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh--hhCCCCCccEEEECCCC
Confidence 5899999999999998876531 24788999999999999999643222 11111 11112369999999998
Q ss_pred CCCC
Q 023723 86 LLGN 89 (278)
Q Consensus 86 q~fS 89 (278)
-+.+
T Consensus 212 i~~~ 215 (307)
T PRK11805 212 VDAE 215 (307)
T ss_pred CCcc
Confidence 7654
No 49
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.32 E-value=0.013 Score=53.08 Aligned_cols=89 Identities=13% Similarity=0.061 Sum_probs=60.8
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc---c-ccccccccCCCEEEeCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR---K-PLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~---~-~~~~~~~~~~Dll~~g~PCq~ 87 (278)
.-+|+|+.||.|.++..+...| ...|.++|+++.+.+.-+.|.....+.+.. . .........+|++++...++
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH-
Confidence 4699999999999999998888 468999999999999988887543332211 0 01111134789999864321
Q ss_pred CCcccccCCCCCCCCchHHHHhhhcCCc
Q 023723 88 GNDDMTVITKHDQPDDSWDKLLESCDPV 115 (278)
Q Consensus 88 fS~ag~~~g~~d~r~~l~~~~i~~~~P~ 115 (278)
....++.++.+.++|.
T Consensus 237 ------------~l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 237 ------------VIKELYPQFSRLVKPG 252 (288)
T ss_pred ------------HHHHHHHHHHHHcCCC
Confidence 1123555677778885
No 50
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.29 E-value=0.0047 Score=57.61 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=34.1
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
+++|||||+|.+++.+-... +.|.++|+++.|++.-++|..
T Consensus 199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHH
Confidence 79999999999999996654 789999999999988888764
No 51
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.29 E-value=0.0071 Score=56.86 Aligned_cols=71 Identities=15% Similarity=-0.005 Sum_probs=48.3
Q ss_pred CCeEEeeecchhhHHHHHHhc--CCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA--DVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a--G~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
.+++||+|||+|..++=+... | .+.|+++|+|+.|++..+.|...... ..+...+-......+|++..-|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~g--a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEG--VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 489999999999988665443 6 57899999999999999999743321 1121111001123588888876
Q ss_pred C
Q 023723 84 S 84 (278)
Q Consensus 84 P 84 (278)
+
T Consensus 123 f 123 (374)
T TIGR00308 123 F 123 (374)
T ss_pred C
Confidence 5
No 52
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.27 E-value=0.0086 Score=52.98 Aligned_cols=72 Identities=17% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc-------cccccc-ccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ-------AKRKPL-SFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-------~~~~~~-~~~~~~~~Dll~~g~ 83 (278)
.-+++||+||.|.+.+.+..--- --.+.+||+++.+.+--++|.....+. +|.... .......+|++++-|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 67999999999999998866521 246789999999999888887654432 222111 112234699999999
Q ss_pred C
Q 023723 84 S 84 (278)
Q Consensus 84 P 84 (278)
|
T Consensus 124 P 124 (248)
T COG4123 124 P 124 (248)
T ss_pred C
Confidence 9
No 53
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.27 E-value=0.0018 Score=58.22 Aligned_cols=46 Identities=24% Similarity=0.269 Sum_probs=40.8
Q ss_pred CeEEeeecchhhHHH-HHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC
Q 023723 13 WRVLEFYSGIGGMRY-SLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~-gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~ 60 (278)
=.++|||||||=+.+ -+..|| .+.|+|+|||+.+++.++.|-....
T Consensus 196 eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~ 242 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN 242 (351)
T ss_pred chhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc
Confidence 468999999999999 889999 6999999999999999999865443
No 54
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.13 E-value=0.02 Score=51.66 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=54.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc-------ccccccccccccCCCEEEeCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ-------AKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-------~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.+++|++||.|.+.+.+....- -..|.++|+++.|.+.-+.|....... .+.. +......+|+++.-||.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~--~~~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF--EPLAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--ccCcCCCccEEEECCCC
Confidence 5899999999999998887642 236899999999999999986432221 1111 11111269999999999
Q ss_pred CCCCc
Q 023723 86 LLGND 90 (278)
Q Consensus 86 q~fS~ 90 (278)
-+.+.
T Consensus 193 i~~~~ 197 (284)
T TIGR00536 193 IDEED 197 (284)
T ss_pred CCcch
Confidence 87664
No 55
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.11 E-value=0.0056 Score=51.57 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=58.2
Q ss_pred CCeEEeeecchhhHH--HHHHhcCCC------ceEEEEEcCCHHHHHHHHHHcCCCCcccc-------ccccccccccCC
Q 023723 12 AWRVLEFYSGIGGMR--YSLMKADVS------AQVVEAFDINDKANDVYELNFGHRPYQAK-------RKPLSFRCQLLN 76 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~--~gl~~aG~~------~~~v~a~e~~~~a~~~y~~N~~~~~~~~~-------~~~~~~~~~~~~ 76 (278)
.-.++|-|||.|++- .++....+. -..+.++|+++.+++.-+.|.....+.+. ...+. .....+
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-cccCCC
Confidence 458999999999976 344444431 00278999999999999999865443222 11111 122478
Q ss_pred CEEEeCCCCCCCCcccccCCCCCCCCchHHHHhhh----cCCcEEE
Q 023723 77 NQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLES----CDPVERF 118 (278)
Q Consensus 77 Dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~----~~P~~~i 118 (278)
|+++.-|| -|.+.+.......||..+++. ++|..++
T Consensus 108 d~IvtnPP------yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 108 DAIVTNPP------YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp CEEEEE--------STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred CEEEECcc------hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 99999999 365544322224566655553 7785443
No 56
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.06 E-value=0.022 Score=49.81 Aligned_cols=77 Identities=22% Similarity=0.167 Sum_probs=54.8
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
...+++|++||.|.+...+....- -..+.++|+++.+.+.-+.|...... ..+.. +......+|++++.||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~--~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWF--EPLPGGKFDLIVSNPP 163 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh--ccCcCCceeEEEECCC
Confidence 346899999999999988877531 24788999999999988888643221 12211 1122357999999999
Q ss_pred CCCCCc
Q 023723 85 PLLGND 90 (278)
Q Consensus 85 Cq~fS~ 90 (278)
+...+.
T Consensus 164 y~~~~~ 169 (251)
T TIGR03534 164 YIPEAD 169 (251)
T ss_pred CCchhh
Confidence 877654
No 57
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.01 E-value=0.021 Score=46.28 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=61.3
Q ss_pred CCCeEEeeecchhhHHHHHH-hcCCCceEEEEEcCCHHHHHHHHHHcCCCC------ccccccccccccc-cCCCEEEeC
Q 023723 11 EAWRVLEFYSGIGGMRYSLM-KADVSAQVVEAFDINDKANDVYELNFGHRP------YQAKRKPLSFRCQ-LLNNQLLRS 82 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~-~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~------~~~~~~~~~~~~~-~~~Dll~~g 82 (278)
+..+|||+.||.|-+...+. ..+. -..+.++|+++.+++..+.+..... ...+...++.. . ..+|+++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEEc
Confidence 46899999999999999998 4432 2358999999999999888543211 22333323221 2 589999999
Q ss_pred CCCCCCCcccccCCCCCCCCchHHHHhhhcCCc
Q 023723 83 PSPLLGNDDMTVITKHDQPDDSWDKLLESCDPV 115 (278)
Q Consensus 83 ~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~ 115 (278)
.++.. ..+. ..++..+.+..+|.
T Consensus 81 ~~l~~---------~~~~-~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 81 GVLHH---------FPDP-EKVLKNIIRLLKPG 103 (152)
T ss_dssp STGGG---------TSHH-HHHHHHHHHHEEEE
T ss_pred Cchhh---------ccCH-HHHHHHHHHHcCCC
Confidence 88722 1111 24556677778875
No 58
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.98 E-value=0.024 Score=50.16 Aligned_cols=107 Identities=19% Similarity=0.106 Sum_probs=68.0
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCCCCCCCCc
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
..-+|+|+.||.|.++..+.+.| ...|.++|+++.+++.-+.|.......+. ..+...+ ..+|++++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g--~~~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~-~~fD~Vvani~------ 188 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAELNGVELN-VYLPQGD-LKADVIVANIL------ 188 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCC-CCcCEEEEcCc------
Confidence 45689999999999999998888 35699999999999999998754433221 1111111 16899986421
Q ss_pred ccccCCCCCCCCchHHHHhhhcCCc-EEEEE-eCCCc----cchhhccCc
Q 023723 91 DMTVITKHDQPDDSWDKLLESCDPV-ERFLE-FSNSG----DQVNTETGF 134 (278)
Q Consensus 91 ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E-v~~~~----~~~l~~~GY 134 (278)
.+....++.++.+.++|. .+++- +.... ...+++.|+
T Consensus 189 -------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf 231 (250)
T PRK00517 189 -------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGF 231 (250)
T ss_pred -------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCC
Confidence 011123455667778884 33443 32222 555666666
No 59
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.91 E-value=0.02 Score=54.39 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=49.2
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-----cccccccccccccCCCEEEeCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-----QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-----~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
-+++|++||.|.+.+.+..... ...|.++|+++.|.+.-++|...... ..+...........+|+++..||=
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 4899999999999988765421 24789999999999999998643221 122111111112369999999983
No 60
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.88 E-value=0.02 Score=53.20 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=48.6
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccc--cccccCCCEEEeCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLS--FRCQLLNNQLLRSPS 84 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~--~~~~~~~Dll~~g~P 84 (278)
+|+||.||.|.++..+...+- -..|.++|+++.|++.-+.|.....+.......+ ......+|+|+..||
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPP 270 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPP 270 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCC
Confidence 799999999999988877642 2368999999999988887764433211111000 111357999999998
No 61
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=95.84 E-value=0.024 Score=50.41 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=50.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC----ccccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~----~~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|+|+.||.|.++..+.+.+ ..|.++|+|+...+..+.++.... +..|...+ +.+++|.+++.+|
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~---~~~~~d~Vv~NlP 100 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV---DLPEFNKVVSNLP 100 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC---CchhceEEEEcCC
Confidence 4589999999999999998886 368999999999999998875411 12232222 2345799999988
No 62
>PRK14968 putative methyltransferase; Provisional
Probab=95.59 E-value=0.041 Score=45.71 Aligned_cols=71 Identities=23% Similarity=0.074 Sum_probs=50.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc--------ccccccccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ--------AKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~--------~~~~~~~~~~~~~~Dll~~g~ 83 (278)
.-+++|+.||.|.+...+...+ ..+.++|+++.+.+..++|....... .+.. +......+|+++..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF--EPFRGDKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc--ccccccCceEEEECC
Confidence 3589999999999999887776 46789999999999888876422211 1111 111223699999999
Q ss_pred CCCC
Q 023723 84 SPLL 87 (278)
Q Consensus 84 PCq~ 87 (278)
|..+
T Consensus 99 p~~~ 102 (188)
T PRK14968 99 PYLP 102 (188)
T ss_pred CcCC
Confidence 9754
No 63
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.54 E-value=0.044 Score=41.52 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCeEEeeecchhhHHHHHHh--cCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeC
Q 023723 12 AWRVLEFYSGIGGMRYSLMK--ADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRS 82 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~--aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g 82 (278)
.-+|||+-||.|.+...+.+ .| -.|.++|+++...+..++|...... ..+. .........+|+++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPG---ARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCC---CEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 35899999999999999988 66 3589999999999999999822111 2222 1122233569999887
Q ss_pred C
Q 023723 83 P 83 (278)
Q Consensus 83 ~ 83 (278)
.
T Consensus 78 ~ 78 (112)
T PF12847_consen 78 G 78 (112)
T ss_dssp S
T ss_pred C
Confidence 5
No 64
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.51 E-value=0.023 Score=51.52 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=49.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc--------cccccc-ccc-ccccCCCEEEe
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY--------QAKRKP-LSF-RCQLLNNQLLR 81 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~--------~~~~~~-~~~-~~~~~~Dll~~ 81 (278)
.-+||+|||=.||+++....+| ...|..+|.++.|.+.-+.|+.-..+ ..|... +.. .....+|+|+.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4599999999999999998999 67899999999999999998742221 122111 111 12458999999
Q ss_pred CCCCCCCC
Q 023723 82 SPSPLLGN 89 (278)
Q Consensus 82 g~PCq~fS 89 (278)
-|| .|+
T Consensus 202 DPP--sF~ 207 (286)
T PF10672_consen 202 DPP--SFA 207 (286)
T ss_dssp --S--SEE
T ss_pred CCC--CCC
Confidence 999 454
No 65
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.51 E-value=0.033 Score=50.00 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=49.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC---ccccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP---YQAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~---~~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|+|+-||.|.++..+...+ ..|.++|+|+.+++..+.|+.... +..|...++..+. ..|.+++.+|
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~-~~~~vv~NlP 114 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSEL-QPLKVVANLP 114 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHc-CcceEEEeCC
Confidence 4589999999999999998887 378999999999999999885322 2333222221111 1488888887
No 66
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.17 E-value=0.049 Score=48.23 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=39.0
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
..-+|+|+.||.|.++..+.+.+ ..|.++|+|+..++..+.++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC
Confidence 34689999999999999999887 358999999999999998875
No 67
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=95.13 E-value=0.059 Score=49.04 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=49.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-------ccccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-------YQAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-------~~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|+|+-||.|.++..+...+ ..|.++|+|+.+++..+.|+.... +.+|.... +.+.+|++++.+|
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~---~~~~~d~VvaNlP 110 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT---EFPYFDVCVANVP 110 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh---cccccCEEEecCC
Confidence 3589999999999998887776 468999999999999998874321 22332222 2346788888888
No 68
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.00 E-value=0.064 Score=52.52 Aligned_cols=77 Identities=18% Similarity=0.077 Sum_probs=51.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc--cc--c-cccccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK--RK--P-LSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~--~~--~-~~~~~~~~~Dll~~g~PCq 86 (278)
..+|+|++||.|.+.+.+...- +-..|.++|+++.|++.-+.|.....+.+. .. + .+......+|+++..||=-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 4689999999999998775431 124688999999999999998643222111 00 0 1111224699999999855
Q ss_pred CCC
Q 023723 87 LGN 89 (278)
Q Consensus 87 ~fS 89 (278)
+.+
T Consensus 218 ~~~ 220 (506)
T PRK01544 218 SHS 220 (506)
T ss_pred Cch
Confidence 544
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.98 E-value=0.063 Score=50.59 Aligned_cols=70 Identities=17% Similarity=0.065 Sum_probs=49.3
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc---------cccccccccccccCCCEEEeCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY---------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~---------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
-+|+||.||.|-+++.+.+.+- --.|.++|+++.|++.-+.|...... ..+.. .......+|+|+..|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l--~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL--SGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccc--ccCCCCCEEEEEECc
Confidence 3899999999999998877652 23688999999999998888632211 11111 111224699999999
Q ss_pred CC
Q 023723 84 SP 85 (278)
Q Consensus 84 PC 85 (278)
|-
T Consensus 307 Pf 308 (378)
T PRK15001 307 PF 308 (378)
T ss_pred Cc
Confidence 95
No 70
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.90 E-value=0.049 Score=53.50 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=52.6
Q ss_pred CCCeEEeeecchhhHHHHHHhcCC-----C--ceEEEEEcCCHHHHHHHHHHcCCCC------ccccccc----cccccc
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADV-----S--AQVVEAFDINDKANDVYELNFGHRP------YQAKRKP----LSFRCQ 73 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~-----~--~~~v~a~e~~~~a~~~y~~N~~~~~------~~~~~~~----~~~~~~ 73 (278)
...+++|.+||.|++-.++..... . -..++++|+|+.+....+.|..... ...+... ......
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 467999999999999887754220 0 1568999999999998888853322 1111110 011123
Q ss_pred cCCCEEEeCCCCCCCC
Q 023723 74 LLNNQLLRSPSPLLGN 89 (278)
Q Consensus 74 ~~~Dll~~g~PCq~fS 89 (278)
+.+|+++|-||=-...
T Consensus 111 ~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 111 DLFDIVITNPPYGRLK 126 (524)
T ss_pred CcccEEEeCCCccccC
Confidence 5799999999976543
No 71
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=94.87 E-value=0.076 Score=45.74 Aligned_cols=74 Identities=11% Similarity=0.013 Sum_probs=48.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.-+|||+.||.|.++.-+....-.--.|+++|+++...+.-+.|+....+ ..+.... ......+|+++..+++
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~-~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG-WEPLAPYDRIYVTAAG 156 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC-CcccCCCCEEEEcCCc
Confidence 46899999999999987766531012489999999999888887643322 1111110 1112479999988765
Q ss_pred C
Q 023723 86 L 86 (278)
Q Consensus 86 q 86 (278)
.
T Consensus 157 ~ 157 (215)
T TIGR00080 157 P 157 (215)
T ss_pred c
Confidence 3
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.79 E-value=0.21 Score=42.63 Aligned_cols=103 Identities=9% Similarity=-0.060 Sum_probs=61.4
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccc-cccc-cccccCCCEEEeC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKR-KPLS-FRCQLLNNQLLRS 82 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~-~~~~-~~~~~~~Dll~~g 82 (278)
..-+|+|+.||.|.+...+.... +...|.++|+++.+++.-+.|...... ..+. ..+. ......+|+++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 35689999999999998886543 235799999999999888877632211 2222 1111 0123468999987
Q ss_pred CCCCCCCcccccCCCCCCCCchHHHHhhhcCCcE
Q 023723 83 PSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVE 116 (278)
Q Consensus 83 ~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~ 116 (278)
+|.+.+....... ......++.++.+.++|.-
T Consensus 119 ~~~p~~~~~~~~~--~~~~~~~l~~i~~~LkpgG 150 (202)
T PRK00121 119 FPDPWPKKRHHKR--RLVQPEFLALYARKLKPGG 150 (202)
T ss_pred CCCCCCCcccccc--ccCCHHHHHHHHHHcCCCC
Confidence 7643322111100 0012334555677789953
No 73
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.74 E-value=0.069 Score=47.82 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=51.8
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc--c----cc-----ccccccCCCEEEe
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR--K----PL-----SFRCQLLNNQLLR 81 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~--~----~~-----~~~~~~~~Dll~~ 81 (278)
..++|+|+|.|.+++++... ++=.+|.|+|..+.|+..-.+|-......+-+ + +. .....++.|+|+.
T Consensus 150 ~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred ceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 36999999999999998653 33468899999999999999997543322110 0 00 1122368999999
Q ss_pred CCCCC
Q 023723 82 SPSPL 86 (278)
Q Consensus 82 g~PCq 86 (278)
-||=-
T Consensus 229 NPPYI 233 (328)
T KOG2904|consen 229 NPPYI 233 (328)
T ss_pred CCCcc
Confidence 99953
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.72 E-value=0.12 Score=44.45 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=59.8
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccc-c---ccccccccccCCCEEEeCCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQA-K---RKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-~---~~~~~~~~~~~~Dll~~g~PCq 86 (278)
..-+++|+.||.|.+...+...+ ..|.++|+++.++..-+++.+.....+ . ..++.... ..+|++++.....
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~fD~ii~~~~l~ 130 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-GEFDIVVCMDVLI 130 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-CCcCEEEEhhHHH
Confidence 45799999999999999888776 378999999999999888875433211 1 01111111 4688888754432
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCcEEEEE
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E 120 (278)
.++.. ....++.++.+..+|. ++++
T Consensus 131 ~~~~~--------~~~~~l~~i~~~~~~~-~~i~ 155 (219)
T TIGR02021 131 HYPAS--------DMAKALGHLASLTKER-VIFT 155 (219)
T ss_pred hCCHH--------HHHHHHHHHHHHhCCC-EEEE
Confidence 22211 1223455555556665 4455
No 75
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.65 E-value=0.13 Score=49.97 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=55.2
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc------ccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK------RKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~------~~~~~~~~~~~~Dll~~g~P 84 (278)
..-+|||+|||.||=+.-+-..--+--.|+|+|+++...+..+.|.....+..+ ...+.......+|.|+.-.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 346899999999998876644310012789999999999999999764332211 11111111236899999999
Q ss_pred CCCCCcccc
Q 023723 85 PLLGNDDMT 93 (278)
Q Consensus 85 Cq~fS~ag~ 93 (278)
|.+--...+
T Consensus 193 CSG~G~~rk 201 (470)
T PRK11933 193 CSGEGTVRK 201 (470)
T ss_pred CCCCccccc
Confidence 987654433
No 76
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.65 E-value=0.021 Score=48.61 Aligned_cols=77 Identities=21% Similarity=0.080 Sum_probs=57.3
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc--cccccccccCCCEEEeCCCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR--KPLSFRCQLLNNQLLRSPSPLLGN 89 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~--~~~~~~~~~~~Dll~~g~PCq~fS 89 (278)
.-+||||.||.|-.+.+.-.+| ..-|++.|+++.+.+..+.|-....+.-.. .+.-. +.+.+|++++|-=|=+.+
T Consensus 80 gkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred cceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEeeceecCch
Confidence 4699999999999999999999 688999999999999988886433221100 11111 457899999998776555
Q ss_pred cc
Q 023723 90 DD 91 (278)
Q Consensus 90 ~a 91 (278)
.+
T Consensus 157 ~a 158 (218)
T COG3897 157 EA 158 (218)
T ss_pred HH
Confidence 43
No 77
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=94.65 E-value=0.21 Score=43.21 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=61.7
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|||+.||.|.+..-+.+. |- -..|.++|+++..++.-+.|...... ..+..... .....+|+++.+..
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGP-EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGFG 123 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEecc
Confidence 458999999999998877654 32 23789999999999888887643222 12211111 12346899998755
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
.+.++ + ...++.++.+.++|. ++++|
T Consensus 124 l~~~~---------~-~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 124 LRNVP---------D-YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccCC---------C-HHHHHHHHHHHcCcCeEEEEEE
Confidence 43221 1 224566677788994 55556
No 78
>PRK05785 hypothetical protein; Provisional
Probab=94.61 E-value=0.15 Score=44.42 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=64.3
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCCCCCCCCcc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSPSPLLGNDD 91 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~PCq~fS~a 91 (278)
.-+|||+.||.|-+...+.+.. -..|.++|+++..++.-+... ..+..+...+. .....+|+++.++-.+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp-~~d~sfD~v~~~~~l~~---- 122 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP-FRDKSFDVVMSSFALHA---- 122 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC-CCCCCEEEEEecChhhc----
Confidence 4689999999999988887763 137899999999988766542 11222222221 12346899999764321
Q ss_pred cccCCCCCCCCchHHHHhhhcCCcEEEEEe
Q 023723 92 MTVITKHDQPDDSWDKLLESCDPVERFLEF 121 (278)
Q Consensus 92 g~~~g~~d~r~~l~~~~i~~~~P~~~i~Ev 121 (278)
..| ...++.++.|.++|...++|+
T Consensus 123 -----~~d-~~~~l~e~~RvLkp~~~ile~ 146 (226)
T PRK05785 123 -----SDN-IEKVIAEFTRVSRKQVGFIAM 146 (226)
T ss_pred -----cCC-HHHHHHHHHHHhcCceEEEEe
Confidence 223 345778888899998879994
No 79
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.58 E-value=0.11 Score=44.65 Aligned_cols=96 Identities=15% Similarity=0.048 Sum_probs=63.6
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccccccccCCCEEEeCCCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLSFRCQLLNNQLLRSPSPLLGN 89 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~~~~~~~~Dll~~g~PCq~fS 89 (278)
.-+|||+-||.|-....+... + ...+.++|+++.+++..+.|++...+ ..+... ......+|+++...- +
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~--~~~~~sfD~V~~~~v---L- 115 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD--PFKDNFFDLVLTKGV---L- 115 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC--CCCCCCEEEEEECCh---h-
Confidence 357999999999999988775 3 35789999999999999998876542 222221 222346898885321 1
Q ss_pred cccccCCCC-CCCCchHHHHhhhcCCcEEEEE
Q 023723 90 DDMTVITKH-DQPDDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 90 ~ag~~~g~~-d~r~~l~~~~i~~~~P~~~i~E 120 (278)
...+ +.....+.++.+..+-.+++.|
T Consensus 116 -----~hl~p~~~~~~l~el~r~~~~~v~i~e 142 (204)
T TIGR03587 116 -----IHINPDNLPTAYRELYRCSNRYILIAE 142 (204)
T ss_pred -----hhCCHHHHHHHHHHHHhhcCcEEEEEE
Confidence 0121 2233455666666666777788
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.54 E-value=0.11 Score=43.51 Aligned_cols=109 Identities=14% Similarity=-0.002 Sum_probs=63.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc---cccccccccCCCEEEeCCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR---KPLSFRCQLLNNQLLRSPSPLLG 88 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~---~~~~~~~~~~~Dll~~g~PCq~f 88 (278)
.-++||+.||.|.++..+.+.+- -..|.++|+++.+++.-+.|.......+.. ..........+|+++.+..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~---- 106 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGS---- 106 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCC----
Confidence 45899999999999998877642 246899999999999988886432221110 0011011236888886421
Q ss_pred CcccccCCCCCCCCchHHHHhhhcCCc-EEEEE-eC--CCc--cchhhccCc
Q 023723 89 NDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE-FS--NSG--DQVNTETGF 134 (278)
Q Consensus 89 S~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E-v~--~~~--~~~l~~~GY 134 (278)
. ..-..++....+.++|. .++++ +. +.. ...+++.||
T Consensus 107 -----~----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 107 -----G----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGV 149 (187)
T ss_pred -----c----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCC
Confidence 0 01112344455568885 44555 22 111 556666666
No 81
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=94.25 E-value=0.082 Score=49.98 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=66.5
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc--------cccccc-ccc--ccccCCCEEEeC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY--------QAKRKP-LSF--RCQLLNNQLLRS 82 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~--------~~~~~~-~~~--~~~~~~Dll~~g 82 (278)
+||+|||=.||+++..-.+| ...|..||+++.|.+.-+.|+.-..+ .+|... +.. .....+|||+.-
T Consensus 220 rvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred eEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 59999999999999999999 67889999999999999999854332 222111 111 122489999999
Q ss_pred CCCCCCCcccccCCCCC-CC--CchHHHHhhhcCCcEEEEE
Q 023723 83 PSPLLGNDDMTVITKHD-QP--DDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 83 ~PCq~fS~ag~~~g~~d-~r--~~l~~~~i~~~~P~~~i~E 120 (278)
|| .|+. .+++..+ .| ..|....+++++|.-.++=
T Consensus 298 PP--sF~r--~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 298 PP--SFAR--SKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred Cc--cccc--CcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99 2332 2222211 11 1233334556888766655
No 82
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.98 E-value=0.078 Score=49.95 Aligned_cols=45 Identities=31% Similarity=0.413 Sum_probs=36.4
Q ss_pred CCCeEEeeecchh--hHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 11 EAWRVLEFYSGIG--GMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 11 ~~~~v~dLFsG~G--g~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
++++++|-+||+| |++++.|-+| .+.|+++|+|+.|++..+.|..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~--~~~v~~NDi~~~a~~~i~~N~~ 95 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG--VDKVTANDISPEAVELIKRNLE 95 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS--ECEEEEEES-HHHHHHHHHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCC--CCEEEEecCCHHHHHHHHHhHh
Confidence 4689999999988 5788999888 5899999999999999999964
No 83
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.98 E-value=0.075 Score=48.33 Aligned_cols=76 Identities=16% Similarity=0.084 Sum_probs=44.3
Q ss_pred CCCeEEeeecchhhHHHHHHh--------cCCCceEEEEEcCCHHHHHHHHHHcC-----CC---Cccccccccccc-cc
Q 023723 11 EAWRVLEFYSGIGGMRYSLMK--------ADVSAQVVEAFDINDKANDVYELNFG-----HR---PYQAKRKPLSFR-CQ 73 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~--------aG~~~~~v~a~e~~~~a~~~y~~N~~-----~~---~~~~~~~~~~~~-~~ 73 (278)
..-+|+|.+||.|++-+++.. .. -..++++|+++.++..-+.|.- .. ....+....... ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~--~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIK--EINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHC--CEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccc--cceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345799999999999877654 12 3678999999999887776642 11 011222211111 14
Q ss_pred cCCCEEEeCCCCCCC
Q 023723 74 LLNNQLLRSPSPLLG 88 (278)
Q Consensus 74 ~~~Dll~~g~PCq~f 88 (278)
..+|++++-||=-..
T Consensus 124 ~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSK 138 (311)
T ss_dssp --EEEEEEE--CTCE
T ss_pred cccccccCCCCcccc
Confidence 589999999995443
No 84
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.43 Score=44.59 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=56.3
Q ss_pred CCeEEeeecchhhHHHHHHhcCCC-ceEEEEEcCCHHHHHHHHHHcCCCCccc-------ccccccccccc-CCCEEEeC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVS-AQVVEAFDINDKANDVYELNFGHRPYQA-------KRKPLSFRCQL-LNNQLLRS 82 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~-~~~v~a~e~~~~a~~~y~~N~~~~~~~~-------~~~~~~~~~~~-~~Dll~~g 82 (278)
.-+|+|+||+.||=+.-+-++.-+ ..+|+|+|+++...+..++|........ .....+..... .+|-++.-
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlD 236 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLD 236 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEEC
Confidence 479999999999976655444311 2467999999999999999975443221 11111111112 49999999
Q ss_pred CCCCCCCccccc
Q 023723 83 PSPLLGNDDMTV 94 (278)
Q Consensus 83 ~PCq~fS~ag~~ 94 (278)
+||.+.-...+.
T Consensus 237 aPCSg~G~irr~ 248 (355)
T COG0144 237 APCSGTGVIRRD 248 (355)
T ss_pred CCCCCCcccccC
Confidence 999887666554
No 85
>PLN02672 methionine S-methyltransferase
Probab=93.94 E-value=0.1 Score=55.16 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=37.6
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
.+|+||.||.|.+++.+....- -..|.++|+++.|++.-+.|-.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 4899999999999999877642 2478999999999999998874
No 86
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=93.94 E-value=0.18 Score=46.52 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=49.1
Q ss_pred CCCCeEEeeecchhhHHHHH--HhcCCCceEEEEEcCCHHHHHHHHHHcCCC-Cccccc-c-------c-ccc--ccccC
Q 023723 10 GEAWRVLEFYSGIGGMRYSL--MKADVSAQVVEAFDINDKANDVYELNFGHR-PYQAKR-K-------P-LSF--RCQLL 75 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl--~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~-~~~~~~-~-------~-~~~--~~~~~ 75 (278)
....++||+-+|+|++..-+ ...+ -.+.|+|+|+.|++.-+.|.... .+.+.+ . . ... .....
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~---~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYG---WRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCC---CEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCc
Confidence 45689999999999886544 3335 35789999999999999987654 232210 0 0 000 11346
Q ss_pred CCEEEeCCC
Q 023723 76 NNQLLRSPS 84 (278)
Q Consensus 76 ~Dll~~g~P 84 (278)
+|+++.-||
T Consensus 190 fDlivcNPP 198 (321)
T PRK11727 190 FDATLCNPP 198 (321)
T ss_pred eEEEEeCCC
Confidence 999999999
No 87
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.94 E-value=0.11 Score=43.95 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=36.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
.-+|+|++||.|.++..+...+- -..|.++|+++.+++..+.|..
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~ 85 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCD 85 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 35899999999999888765431 2478999999999999998864
No 88
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.77 E-value=0.18 Score=44.65 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
...+|+|+-||.|.++..+...| ..|.++|+++.+++..+.+...... ..+...+.......+|+++...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45799999999999999998888 3678999999999988887653321 1121111111234689998653
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhhcCCcEEE
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERF 118 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i 118 (278)
...- ..|+ ..++.++.+.++|.-.+
T Consensus 121 vl~~---------~~~~-~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 121 VLEW---------VADP-KSVLQTLWSVLRPGGAL 145 (255)
T ss_pred HHHh---------hCCH-HHHHHHHHHHcCCCeEE
Confidence 3211 2222 24666788889996443
No 89
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=93.65 E-value=0.5 Score=41.63 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=64.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccccccccCCCEEEeCCCCCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
.-+|||+-||.|.+..-+.... +...|.++|+++..++.-+.++++..+ ..+..... ....+|+++.....+-
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~--- 105 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ--PPQALDLIFANASLQW--- 105 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC--CCCCccEEEEccChhh---
Confidence 4689999999999988776652 135789999999999999988865432 22322221 2247999998765432
Q ss_pred ccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 91 DMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 91 ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
..|. ..++.++.+.++|. .++++
T Consensus 106 ------~~d~-~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 106 ------LPDH-LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ------CCCH-HHHHHHHHHhcCCCcEEEEE
Confidence 1222 24667788888885 45555
No 90
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=93.57 E-value=0.31 Score=41.91 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=48.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccc-c---ccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQA-K---RKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-~---~~~~~~~~~~~~Dll~~g~P 84 (278)
...+|||+.||.|.+...+...| . .|.++|+++.+++.-+.++......+ + ..++.. ....+|+++....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--A-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-LLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--C-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-ccCCcCEEEEcch
Confidence 45799999999999999998888 3 48999999999998888875432211 1 011111 1246888886544
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.56 E-value=0.29 Score=41.93 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=49.7
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc------ccccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ------AKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~------~~~~~~~~~~~~~~Dll~~g~P 84 (278)
...+|+|+.||.|.++.-+...+ ..|.++|+++.+.+.-++|+....+. .+... .......+|+++...+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWK-GWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCccc-CCCcCCCcCEEEEccC
Confidence 45799999999999988776664 36899999999988888887543221 11111 0111256999998876
Q ss_pred CC
Q 023723 85 PL 86 (278)
Q Consensus 85 Cq 86 (278)
|.
T Consensus 154 ~~ 155 (212)
T PRK00312 154 AP 155 (212)
T ss_pred ch
Confidence 54
No 92
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.33 E-value=0.18 Score=44.27 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=58.9
Q ss_pred CCCeEEeeecchhhHHHHHHh-cCCCceEEEEEcCCHHHHHHHHHHcCCCC------ccccccccccccccCCCEEEeCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGHRP------YQAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~-aG~~~~~v~a~e~~~~a~~~y~~N~~~~~------~~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
...+|||+.||.|-++..+.+ .|- --.|.++|+++.=.+.-++...... +..+...+.. ....+|+++.++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~-~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~-~d~sfD~v~~~f 124 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGP-NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF-PDNSFDAVTCSF 124 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S--TT-EEEEEEES
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCC-ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC-CCCceeEEEHHh
Confidence 346999999999999887755 342 2378899999987777766543221 1222222221 224689998876
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhhcCC--cEEEEE
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P--~~~i~E 120 (278)
= -+. ..| +...+.|+.|.+|| +++++|
T Consensus 125 g--------lrn-~~d-~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 125 G--------LRN-FPD-RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp ---------GGG--SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred h--------HHh-hCC-HHHHHHHHHHHcCCCeEEEEee
Confidence 2 222 323 34577889999999 788999
No 93
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.31 Score=45.17 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=69.9
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc----cccccccccc--CCCEEEeCCCCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK----RKPLSFRCQL--LNNQLLRSPSPLL 87 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~----~~~~~~~~~~--~~Dll~~g~PCq~ 87 (278)
.++|=|||.||+-.-...-|+ .+.++|++...+.--+.|+.+-.+.+- ..++...+.+ .+|-++.-||
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPP--- 273 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPP--- 273 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecCC---
Confidence 789999999999888777884 567789999999999999876532211 1112222233 4999999999
Q ss_pred CCcccccCCCCCCC-CchHHHHhhh----cCCcE-EEEEeCCCccchhhccCc
Q 023723 88 GNDDMTVITKHDQP-DDSWDKLLES----CDPVE-RFLEFSNSGDQVNTETGF 134 (278)
Q Consensus 88 fS~ag~~~g~~d~r-~~l~~~~i~~----~~P~~-~i~Ev~~~~~~~l~~~GY 134 (278)
-|+........ ..|+.++++. ++|.- +++=..-.....++++||
T Consensus 274 ---YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~~~f 323 (347)
T COG1041 274 ---YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEELGF 323 (347)
T ss_pred ---CCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhhcCc
Confidence 35443332222 4577766654 67733 333322111445555555
No 94
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.13 E-value=0.62 Score=41.48 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCC--------C-ccccccccccccccCCCEEEe
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHR--------P-YQAKRKPLSFRCQLLNNQLLR 81 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~--------~-~~~~~~~~~~~~~~~~Dll~~ 81 (278)
.-+|||+.||.|.+..-+... |. -..|.++|+++...+..+.+.+.. . ...+...+. .....+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 568999999999988776543 42 137899999999988877654311 1 112211111 11235898886
Q ss_pred CCCCCCCCcccccCCCCCCCCchHHHHhhhcCC--cEEEEE
Q 023723 82 SPSPLLGNDDMTVITKHDQPDDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 82 g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P--~~~i~E 120 (278)
+.-.. ... +...++.++.|.++| +++++|
T Consensus 152 ~~~l~---------~~~-d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLR---------NVV-DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccc---------cCC-CHHHHHHHHHHHcCcCcEEEEEE
Confidence 54321 122 334577889999999 466777
No 95
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=93.10 E-value=0.27 Score=43.14 Aligned_cols=91 Identities=12% Similarity=-0.013 Sum_probs=61.2
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-ccccccccccccccCCCEEEeCCCCCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-YQAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
.-+|||+-||.|.++.-+...| ..|.++|+++.+++.-+.+.+... ...+..... .....+|+++...+=|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~V~s~~~l~---- 114 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLP-LATATFDLAWSNLAVQ---- 114 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCc-CCCCcEEEEEECchhh----
Confidence 4689999999999988887776 478999999999999888876433 223322221 1224689998654311
Q ss_pred ccccCCCCCCCCchHHHHhhhcCCcE
Q 023723 91 DMTVITKHDQPDDSWDKLLESCDPVE 116 (278)
Q Consensus 91 ag~~~g~~d~r~~l~~~~i~~~~P~~ 116 (278)
...| ...++.++.+.++|.-
T Consensus 115 -----~~~d-~~~~l~~~~~~Lk~gG 134 (251)
T PRK10258 115 -----WCGN-LSTALRELYRVVRPGG 134 (251)
T ss_pred -----hcCC-HHHHHHHHHHHcCCCe
Confidence 1222 2356677888899953
No 96
>PRK04148 hypothetical protein; Provisional
Probab=93.05 E-value=0.51 Score=37.86 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=46.3
Q ss_pred CCeEEeeecchhh-HHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGG-MRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg-~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
..+++++=+|.|. ++..|.+.| ..|.|+|+++.|++..+.+.-+. +.+|..+.+..--..+|++-..-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~-v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNA-FVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeE-EECcCCCCCHHHHhcCCEEEEeC
Confidence 4789999999886 888898989 47889999999999888874322 33443322222223556655543
No 97
>PRK10742 putative methyltransferase; Provisional
Probab=92.98 E-value=0.25 Score=43.83 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=39.5
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
....+|||+|||.|..+.=+-..| .+ |.++|.++.+....+.|...
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~G--~~-V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASVG--CR-VRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHH
Confidence 334699999999999998888889 56 89999999999998888754
No 98
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=92.94 E-value=0.66 Score=40.92 Aligned_cols=99 Identities=18% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
+..+|||++||.|-+++.+.+..- --.|.++|+++.=.+.-+.-..+... ..+...+. .+...+|+++.++-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fg 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFG 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeeh
Confidence 578999999999999998876532 34678899999988887776665432 22222121 22246899888764
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCC--cEEEEEe
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDP--VERFLEF 121 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P--~~~i~Ev 121 (278)
=+. .. .....+.|+.|.++| +++++|+
T Consensus 129 lrn---------v~-d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 129 LRN---------VT-DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hhc---------CC-CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 322 22 334577889999999 4577783
No 99
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=92.86 E-value=0.4 Score=40.02 Aligned_cols=80 Identities=11% Similarity=0.040 Sum_probs=66.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-cccccc----ccccccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-YQAKRK----PLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~~~~~~----~~~~~~~~~~Dll~~g~PCq 86 (278)
.+.|+||=.|.|-++.++-+-|+.-+.+.++|++++-...+..-||... +..+.. .+.+...+.+|.++.|.|--
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence 4789999999999999999999888999999999999999999999886 444422 24445567899999999977
Q ss_pred CCCcc
Q 023723 87 LGNDD 91 (278)
Q Consensus 87 ~fS~a 91 (278)
.|+..
T Consensus 129 ~~P~~ 133 (194)
T COG3963 129 NFPMH 133 (194)
T ss_pred cCcHH
Confidence 76654
No 100
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=92.46 E-value=0.6 Score=40.01 Aligned_cols=98 Identities=13% Similarity=0.044 Sum_probs=63.3
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC--ccccccccccccccCCCEEEeCCCCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP--YQAKRKPLSFRCQLLNNQLLRSPSPLLG 88 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~--~~~~~~~~~~~~~~~~Dll~~g~PCq~f 88 (278)
...+|||+-||.|.++.-+...+. ...+.++|+++...+..+.+.+... +..+..... .....+|+++....++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLP-LEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCC-CCCCceeEEEEhhhhhhc
Confidence 346899999999999998888774 3458999999999988887775321 222211111 123468999987655432
Q ss_pred CcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 89 NDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 89 S~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
.| ...++.++.+.++|. ++++.
T Consensus 112 ---------~~-~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 112 ---------DD-LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ---------cC-HHHHHHHHHHHcCCCcEEEEE
Confidence 12 223556677778884 34444
No 101
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=92.20 E-value=0.3 Score=41.48 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=63.3
Q ss_pred CCeEEeeecchhhHHHHHHh-cCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~-aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
.-+++|++||.|.+++.+.. .+- ...|.++|+++.+.+.-+.|...... ..+....-....+.+|.++.+.
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 35899999999999887654 332 24799999999999988777532211 1111110001124689888752
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEEeCCC---c--cchhhccCc
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLEFSNS---G--DQVNTETGF 134 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~Ev~~~---~--~~~l~~~GY 134 (278)
. .. .....+..+.+.++|. .+++++... . ...|+++|+
T Consensus 120 ~------------~~-~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 120 G------------SE-KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred C------------cc-cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 1 11 1123444556668883 455662211 1 666667776
No 102
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=92.19 E-value=0.2 Score=44.04 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=79.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-c--------ccc-ccccccccccCCCEEE
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-Y--------QAK-RKPLSFRCQLLNNQLL 80 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~--------~~~-~~~~~~~~~~~~Dll~ 80 (278)
+.-+|+|-|-|.|=.+...-+.| ...|..+|.|++-.+.-..| |... . ..| ...+...+...+|.|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccC-CCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45699999999999998888889 56889999999988777766 3222 1 111 1112333445699999
Q ss_pred eCCCCCCCCcccccCCCCCCCCchHHHHhhhcCCcEEEEE-eCCC-------c-----cchhhccCc
Q 023723 81 RSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE-FSNS-------G-----DQVNTETGF 134 (278)
Q Consensus 81 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E-v~~~-------~-----~~~l~~~GY 134 (278)
.-|| -||.||. +- .-.+|.++.|+++|---+|- +-+. + .+.|++.|+
T Consensus 211 HDPP--RfS~Age---LY--seefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF 270 (287)
T COG2521 211 HDPP--RFSLAGE---LY--SEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGF 270 (287)
T ss_pred eCCC--ccchhhh---Hh--HHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCc
Confidence 9999 5888883 21 12467789999999877777 4321 1 566777777
No 103
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.16 E-value=0.37 Score=42.40 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc--cccccccc--ccCCCEEEeCCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK--RKPLSFRC--QLLNNQLLRSPSPL 86 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~--~~~~~~~~--~~~~Dll~~g~PCq 86 (278)
..++|||.=||.|-++.-+.+.| -.|.++|+.+.++++-+.--......-+ ...+.... .+.+|+++. -
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~c----m 131 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTC----M 131 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEE----h
Confidence 57899999999999999999999 4789999999999998866554443211 11111111 257888873 1
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCcEEEEE
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E 120 (278)
. --.+..|++. ......+.+||--+++=
T Consensus 132 E-----VlEHv~dp~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 132 E-----VLEHVPDPES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred h-----HHHccCCHHH-HHHHHHHHcCCCcEEEE
Confidence 1 1223445543 33335556889766654
No 104
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=92.07 E-value=0.33 Score=34.91 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=59.2
Q ss_pred EeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc---cccccccccccccCCCEEEeCCCCCCCCccc
Q 023723 16 LEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY---QAKRKPLSFRCQLLNNQLLRSPSPLLGNDDM 92 (278)
Q Consensus 16 ~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~---~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ag 92 (278)
||+=||.|-....+...+ ...+.++|+++...+..+.+...... ..+...+ ......+|+++...-.+-+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~---- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL---- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS----
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec----
Confidence 688899999999998883 36889999999999999998876542 2222222 2223478888776444332
Q ss_pred ccCCCCCCCCchHHHHhhhcCCcEEE
Q 023723 93 TVITKHDQPDDSWDKLLESCDPVERF 118 (278)
Q Consensus 93 ~~~g~~d~r~~l~~~~i~~~~P~~~i 118 (278)
+.+...+.++.|.++|.-++
T Consensus 74 ------~~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 74 ------EDPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp ------SHHHHHHHHHHHHEEEEEEE
T ss_pred ------cCHHHHHHHHHHHcCcCeEE
Confidence 23345677788888886443
No 105
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.07 E-value=0.63 Score=41.65 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=48.1
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC--ccccccc---ccc-----ccccCCCEEEeC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP--YQAKRKP---LSF-----RCQLLNNQLLRS 82 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~--~~~~~~~---~~~-----~~~~~~Dll~~g 82 (278)
-+||++.+|.|++...+.+.+ ....+.++|+|+..++..+.+++... ..+.... .+. .....+|+|+..
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 74 KHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 399999999999887765554 24688999999999999988876432 1111111 011 113479999987
Q ss_pred CC
Q 023723 83 PS 84 (278)
Q Consensus 83 ~P 84 (278)
++
T Consensus 153 ~~ 154 (270)
T TIGR00417 153 ST 154 (270)
T ss_pred CC
Confidence 54
No 106
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=92.05 E-value=0.4 Score=42.74 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=52.1
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC----cccccccccccc--ccCCCEEEeCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP----YQAKRKPLSFRC--QLLNNQLLRSPS 84 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~----~~~~~~~~~~~~--~~~~Dll~~g~P 84 (278)
+.-.|+|+.+|.|.++..|...+ ..+.++|+|+..++.++..+.... +..|...++... .....+++|..|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSEEEEEEEET
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCceEEEEEec
Confidence 56789999999999999999988 688999999999999999886222 234433333222 224557777766
No 107
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=92.01 E-value=0.66 Score=39.34 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=61.1
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc--ccccccccccc-ccCCCEEEeCCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY--QAKRKPLSFRC-QLLNNQLLRSPSPLLG 88 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~--~~~~~~~~~~~-~~~~Dll~~g~PCq~f 88 (278)
.-++||+=||.|-.+.-+...| + .|.++|+++.+++..+.+.....+ .....+..... ...+|+++...+.-.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g--~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG--Y-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC--C-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccccC
Confidence 4689999999999999888888 3 689999999999887665432211 11111111111 2368999877664221
Q ss_pred CcccccCCCCCCCCchHHHHhhhcCCcE--EEEE
Q 023723 89 NDDMTVITKHDQPDDSWDKLLESCDPVE--RFLE 120 (278)
Q Consensus 89 S~ag~~~g~~d~r~~l~~~~i~~~~P~~--~i~E 120 (278)
+. +.+..++..+.+.++|.- ++++
T Consensus 108 ~~--------~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 108 QA--------GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CH--------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 10 122345666777789963 4555
No 108
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=92.00 E-value=0.47 Score=41.80 Aligned_cols=100 Identities=9% Similarity=0.027 Sum_probs=61.6
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCccc-c---ccccccccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQA-K---RKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-~---~~~~~~~~~~~~Dll~~g~PCq 86 (278)
.-+|||+-||.|.....+.+. ..+--.+.++|+++.+++.-+.|........ . ..++.....++.|+++.++.=+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 468999999999988777541 1112378899999999999888875322111 1 0111112234577777543211
Q ss_pred CCCcccccCCCC-CCCCchHHHHhhhcCC--cEEEEE
Q 023723 87 LGNDDMTVITKH-DQPDDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~-d~r~~l~~~~i~~~~P--~~~i~E 120 (278)
. .+ +.+..++.++.+.++| .+++.|
T Consensus 137 -------~--l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 137 -------F--LEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred -------h--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 11 2345677788888999 567778
No 109
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=91.60 E-value=0.28 Score=44.35 Aligned_cols=82 Identities=16% Similarity=-0.004 Sum_probs=53.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc------ccccccccc-CCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR------KPLSFRCQL-LNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~------~~~~~~~~~-~~Dll~~g~P 84 (278)
.-+|+|+||+.||=+..+-..--+--.|+|+|+++..+...+.|.......... ......... .+|.++.-.|
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCC
Confidence 456999999999977655443211237899999999999999987543322111 111111122 4899999999
Q ss_pred CCCCCcccc
Q 023723 85 PLLGNDDMT 93 (278)
Q Consensus 85 Cq~fS~ag~ 93 (278)
|.+.-...+
T Consensus 166 CSg~G~i~r 174 (283)
T PF01189_consen 166 CSGLGTIRR 174 (283)
T ss_dssp CCCGGGTTT
T ss_pred ccchhhhhh
Confidence 998655444
No 110
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.57 E-value=0.19 Score=43.76 Aligned_cols=79 Identities=15% Similarity=0.030 Sum_probs=54.2
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-------ccccccc----cccccccCCCEE
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-------YQAKRKP----LSFRCQLLNNQL 79 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-------~~~~~~~----~~~~~~~~~Dll 79 (278)
..-.++|-|||+||-..=|-.-| -.|.++|+|+.-+..-++|-.--- +++|.+. ++. +...+|++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~-~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA-DKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh-hhheeeee
Confidence 45578999999999998888877 488999999999988888853221 1233111 111 12247889
Q ss_pred EeCCCCCCCCcccc
Q 023723 80 LRSPSPLLGNDDMT 93 (278)
Q Consensus 80 ~~g~PCq~fS~ag~ 93 (278)
..+||--+-|-.+.
T Consensus 170 f~sppwggp~y~~~ 183 (263)
T KOG2730|consen 170 FLSPPWGGPSYLRA 183 (263)
T ss_pred ecCCCCCCcchhhh
Confidence 88888766555543
No 111
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.47 E-value=0.5 Score=35.22 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEeeecchhhHHHHHHhc---CCCceEEEEEcCCHHHHHHHHHHcCC----CC-ccccccccccccccCCCEEEe
Q 023723 15 VLEFYSGIGGMRYSLMKA---DVSAQVVEAFDINDKANDVYELNFGH----RP-YQAKRKPLSFRCQLLNNQLLR 81 (278)
Q Consensus 15 v~dLFsG~Gg~~~gl~~a---G~~~~~v~a~e~~~~a~~~y~~N~~~----~~-~~~~~~~~~~~~~~~~Dll~~ 81 (278)
|+|+-||.|-....+... |. -..+.++|+++.+.+..++++.. .. +..+...+. .....+|+++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~-~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGP-SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcc-cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEE
Confidence 689999999999988876 32 15889999999999999998832 11 233333322 22358999998
No 112
>PRK06202 hypothetical protein; Provisional
Probab=91.46 E-value=0.84 Score=39.60 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=60.4
Q ss_pred CCCCeEEeeecchhhHHHHHHh----cCCCceEEEEEcCCHHHHHHHHHHcCCCCc---cccccccccccccCCCEEEeC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMK----ADVSAQVVEAFDINDKANDVYELNFGHRPY---QAKRKPLSFRCQLLNNQLLRS 82 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~----aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~---~~~~~~~~~~~~~~~Dll~~g 82 (278)
....+|+|+-||.|.+...|.. .|.. -.|.++|+++.+++.-+.+.....+ ..+...+.. ....+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~-~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA-EGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc-cCCCccEEEEC
Confidence 3457999999999998877653 3532 3689999999999988877643221 111111111 23479999987
Q ss_pred CCCCCCCcccccCCCCCC-CCchHHHHhhhcCCcEEEEE
Q 023723 83 PSPLLGNDDMTVITKHDQ-PDDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 83 ~PCq~fS~ag~~~g~~d~-r~~l~~~~i~~~~P~~~i~E 120 (278)
.-... ..|+ ...++.++.+..+. .++++
T Consensus 137 ~~lhh---------~~d~~~~~~l~~~~r~~~~-~~~i~ 165 (232)
T PRK06202 137 HFLHH---------LDDAEVVRLLADSAALARR-LVLHN 165 (232)
T ss_pred Ceeec---------CChHHHHHHHHHHHHhcCe-eEEEe
Confidence 54322 2222 23455666666774 55555
No 113
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=91.41 E-value=0.16 Score=44.72 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHH
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYE 53 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~ 53 (278)
..-+++|+|||.|.+.+.+...+ ..|+++|+++.....++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHH
Confidence 56789999999999999887644 68899999999888887
No 114
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=91.25 E-value=0.72 Score=41.17 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=63.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC-C---ccccccccccccccCCCEEEeCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR-P---YQAKRKPLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~-~---~~~~~~~~~~~~~~~~Dll~~g~PCq~ 87 (278)
.=+|+|.=.|.|.++..|.+.+ ..|.|+|+|+.-+...+..+... . +..|...++.......+.+++-.|=+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~- 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPYN- 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCCCc-
Confidence 4689999999999999999988 46999999999999999987522 1 34444433332212567777777721
Q ss_pred CCcccccCCCCCCCCchHHHHhhhcCC--cEEEEE
Q 023723 88 GNDDMTVITKHDQPDDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 88 fS~ag~~~g~~d~r~~l~~~~i~~~~P--~~~i~E 120 (278)
-.+.+.+++++...+ ..++|-
T Consensus 107 ------------Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 107 ------------ISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred ------------ccHHHHHHHHhccCccceEEEEe
Confidence 123567777776433 455554
No 115
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=91.16 E-value=0.45 Score=43.77 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=39.3
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
+..+|||+.||.|.++..+.+.| ..|.++|+++.+++.-+.|.+.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~ 188 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKE 188 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh
Confidence 45799999999999999998888 3689999999999988888754
No 116
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.15 E-value=0.9 Score=38.81 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=46.4
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
.-+|||+.||.|..+.-+.+. +- ...|.++|+++.+.+.-+.|+....+ ..+.... ......+|+++.+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG-LEKHAPFDAIIVTA 150 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC-CccCCCccEEEEcc
Confidence 468999999999998766543 21 13789999999988877777643222 1111110 11124689988876
Q ss_pred CC
Q 023723 84 SP 85 (278)
Q Consensus 84 PC 85 (278)
.+
T Consensus 151 ~~ 152 (205)
T PRK13944 151 AA 152 (205)
T ss_pred Cc
Confidence 54
No 117
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=91.13 E-value=0.68 Score=35.27 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=55.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
..+++|+.||.|.+..-+.+..- -..|.++|+++.+++.-+.|...... ..+...........+|+++.+.+
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 35899999999999988766531 24789999999998887766432211 11111001111247898887431
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhhcCCc
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLESCDPV 115 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~~~P~ 115 (278)
. .....++.++.+.++|.
T Consensus 98 -----------~-~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 98 -----------G-GLLQEILEAIWRRLRPG 115 (124)
T ss_pred -----------c-hhHHHHHHHHHHHcCCC
Confidence 0 11124566677778885
No 118
>PRK00811 spermidine synthase; Provisional
Probab=91.07 E-value=0.55 Score=42.41 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=37.9
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
.-+||++.+|.|++..-+.+. + .+.|.++|+|+..++..+.+++.
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~--~~~V~~VEid~~vv~~a~~~~~~ 122 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPS--VEKITLVEIDERVVEVCRKYLPE 122 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCC--CCEEEEEeCCHHHHHHHHHHhHH
Confidence 458999999999998776554 5 57899999999999999988864
No 119
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=90.99 E-value=0.45 Score=41.70 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=33.3
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHH
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDV 51 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~ 51 (278)
+.-+++|+-||.|+++..+.+.| ...|+|+|+.+.-...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence 45689999999999999999998 5889999999965443
No 120
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.68 E-value=0.71 Score=39.91 Aligned_cols=97 Identities=18% Similarity=0.069 Sum_probs=59.2
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-----cccccccccccccCCCEEEeCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-----QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-----~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
...++||+.||.|.+...+.+.| . .+.++|+++.+.+.-+.|+..... ..+...........+|+++.+..+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--A-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--C-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 45689999999999998888877 3 478899999998877777643221 111111111123579999875432
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
.. ..+ ...++..+.+.++|. .+++.
T Consensus 125 ~~---------~~~-~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 125 EH---------VPD-PASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred hc---------cCC-HHHHHHHHHHHcCCCcEEEEE
Confidence 11 111 123455566667774 44444
No 121
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=90.45 E-value=0.74 Score=39.01 Aligned_cols=87 Identities=16% Similarity=0.012 Sum_probs=54.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
..+++|+-||.|.+++.+..+.- ...|.++|.++.+.+.-+.|...... ..+...... ...+|++++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~--~~~fDlV~~~~-- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ--EEKFDVVTSRA-- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC--CCCccEEEEcc--
Confidence 56899999999998887765321 24789999999888777776533322 122111211 34799999641
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhhcCCc
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLESCDPV 115 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~~~P~ 115 (278)
. ......+.++.+.++|.
T Consensus 121 -----------~-~~~~~~l~~~~~~LkpG 138 (187)
T PRK00107 121 -----------V-ASLSDLVELCLPLLKPG 138 (187)
T ss_pred -----------c-cCHHHHHHHHHHhcCCC
Confidence 1 11123455566778884
No 122
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=90.31 E-value=0.67 Score=44.76 Aligned_cols=93 Identities=17% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC---CC-ccccccccc-cccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH---RP-YQAKRKPLS-FRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~---~~-~~~~~~~~~-~~~~~~~Dll~~g~PCq 86 (278)
.-+++|+.||.|.++..|...+ ..|.++|+++.+++.-+...+. .. +..+..... ......+|+++...++.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 3489999999999999998876 4789999999998764433221 11 112211101 11224689999987754
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCc
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPV 115 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~ 115 (278)
-++. +....++.++.+.++|.
T Consensus 115 ~l~~--------~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 115 YLSD--------KEVENLAERMVKWLKVG 135 (475)
T ss_pred hCCH--------HHHHHHHHHHHHhcCCC
Confidence 3321 12234566677778885
No 123
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=90.21 E-value=0.8 Score=41.67 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=48.6
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccc-ccc--ccccccccCCCEEEeCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQA-KRK--PLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-~~~--~~~~~~~~~~Dll~~g~P 84 (278)
+|+||-||.|-+.+-+.+..- -..+..+|+|..|++.-+.|........ .+. .+-..-..++|+|+.-||
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPP 233 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPP 233 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCC
Confidence 899999999999888877653 3466779999999988888765332221 110 001111237999999999
No 124
>PLN02244 tocopherol O-methyltransferase
Probab=90.16 E-value=1.9 Score=39.93 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=59.6
Q ss_pred CCCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEe
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLR 81 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~ 81 (278)
...-+|||+.||.|+++.-+... | -.|.++|+++..++.-+.+...... ..+..... .....+|+++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g---~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG---ANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEE
Confidence 34568999999999999888764 5 3678999999988776665432211 12222111 12346899886
Q ss_pred CCCCCCCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 82 SPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 82 g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
..- -....| +...+.++.+.++|- +++.+
T Consensus 193 ~~~---------~~h~~d-~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MES---------GEHMPD-KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCc---------hhccCC-HHHHHHHHHHHcCCCcEEEEEE
Confidence 321 111222 235677788889994 44444
No 125
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=90.14 E-value=0.54 Score=39.65 Aligned_cols=71 Identities=14% Similarity=-0.028 Sum_probs=44.7
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccc-cccccccCCCEEEeCCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKP-LSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~-~~~~~~~~~Dll~~g~PCq 86 (278)
-+++|+.||.|.+...+...+ ...+.++|+++.+++..+.+.- ..+..+... ........+|+++.....+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~-~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGV-NVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCC-eEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 489999999999988886543 1356899999998877654321 112222111 1112234689999986543
No 126
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.98 E-value=1 Score=38.12 Aligned_cols=77 Identities=21% Similarity=0.029 Sum_probs=52.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHH----HHHHcCCCC-ccccccccccccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDV----YELNFGHRP-YQAKRKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~----y~~N~~~~~-~~~~~~~~~~~~~~~~Dll~~g~PCq 86 (278)
.--++|+=||.|-.+.-|.+.-.+.-...+.|+|+.|+++ -+.|--+.. +..+.. +......+|+++.-||=-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~--~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL--SGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH--hhhccCCccEEEECCCcC
Confidence 4568999999999998887654346788999999999876 333433311 223211 223337899999999966
Q ss_pred CCCc
Q 023723 87 LGND 90 (278)
Q Consensus 87 ~fS~ 90 (278)
+-|-
T Consensus 122 pt~~ 125 (209)
T KOG3191|consen 122 PTSD 125 (209)
T ss_pred cCCc
Confidence 5543
No 127
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=89.77 E-value=1 Score=38.60 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=36.8
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
...+++|+.||.|.+...+.+.+ . .+.++|.++..++..+.|..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~-~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--A-NVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--C-eEEEEeCCHHHHHHHHHHHH
Confidence 36799999999999998888877 3 48899999998888777754
No 128
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.72 E-value=0.78 Score=41.37 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=59.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc--ccccccccc-cccCCCEEEeCCCCCCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ--AKRKPLSFR-CQLLNNQLLRSPSPLLGN 89 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~--~~~~~~~~~-~~~~~Dll~~g~PCq~fS 89 (278)
-+|||+-||.|..++-+...| + .|.++|+++.+++..+.|....... -...++... ....+|+++....+.-.+
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g--~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG--F-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC--C-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhCC
Confidence 389999999999999988888 3 6789999999998877765432221 000111111 134689998876543211
Q ss_pred cccccCCCCCCCCchHHHHhhhcCCcE
Q 023723 90 DDMTVITKHDQPDDSWDKLLESCDPVE 116 (278)
Q Consensus 90 ~ag~~~g~~d~r~~l~~~~i~~~~P~~ 116 (278)
.+.+..++..+.+.++|.-
T Consensus 199 --------~~~~~~~l~~~~~~LkpgG 217 (287)
T PRK12335 199 --------RERIPAIIKNMQEHTNPGG 217 (287)
T ss_pred --------HHHHHHHHHHHHHhcCCCc
Confidence 0122345556677788953
No 129
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.50 E-value=1.6 Score=37.44 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
..+++|+.||.|.++.-+...+.+...+.++|+++.+.+.-+.|+..... ..+..... .....+|+++.+.-
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFG 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEecc
Confidence 47999999999999988877662235789999999998888888754211 11111111 12346898875321
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
. ....+ ...++..+.+.++|. ++++|
T Consensus 131 -----l----~~~~~-~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 -----L----RNVPD-IDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred -----c----ccCCC-HHHHHHHHHHhccCCcEEEEEE
Confidence 1 11112 123445566667874 55666
No 130
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=89.49 E-value=0.75 Score=39.07 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=61.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc---cccccccc-ccCCCEEEeCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK---RKPLSFRC-QLLNNQLLRSPSPLL 87 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~---~~~~~~~~-~~~~Dll~~g~PCq~ 87 (278)
.-+|||+-||.|..+.-|.+.| + .|.++|+++.+++..+.+.....+..+ ..++.... ...+|+++......
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g--~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~- 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANG--F-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLM- 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCC--C-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchh-
Confidence 4689999999999999998888 3 689999999998887776543222111 11111111 23589888654321
Q ss_pred CCcccccCCCCCCCCchHHHHhhhcCCcE--EEEE
Q 023723 88 GNDDMTVITKHDQPDDSWDKLLESCDPVE--RFLE 120 (278)
Q Consensus 88 fS~ag~~~g~~d~r~~l~~~~i~~~~P~~--~i~E 120 (278)
|. ..+.+..++..+.+.++|.- ++++
T Consensus 107 ~~-------~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 107 FL-------EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred hC-------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 10 01234456777888899954 3445
No 131
>PHA01634 hypothetical protein
Probab=89.27 E-value=1.4 Score=35.27 Aligned_cols=70 Identities=9% Similarity=-0.088 Sum_probs=54.2
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccccccc--ccccccCCCEEEeC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPL--SFRCQLLNNQLLRS 82 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~--~~~~~~~~Dll~~g 82 (278)
+.=+|+|.=|+||-.++-|...| .+.|+|+|.++.-.+.++.|.....+.|..... ....-+++|+...-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEEE
Confidence 44589999999999999999999 689999999999999999998766655542111 11245678877763
No 132
>PRK03612 spermidine synthase; Provisional
Probab=89.04 E-value=0.89 Score=44.72 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
.-+|+++.+|.|+....+.+.+- .+.|.++|+|+..++.-+.|+
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~ 341 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSP 341 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCC
Confidence 45899999999998877766541 378999999999999999863
No 133
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=88.92 E-value=0.67 Score=39.86 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=40.3
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCC-ccccccccc-------cccccCCCEEEeC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRP-YQAKRKPLS-------FRCQLLNNQLLRS 82 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~-~~~~~~~~~-------~~~~~~~Dll~~g 82 (278)
.-+||||-||.|+++..+.+. |. ...|.++|+++. .+.++.. +..+..... ......+|+++..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~-~~~V~aVDi~~~------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGD-KGRVIACDILPM------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCC-CceEEEEecccc------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 348999999999999766544 32 248899999982 2233332 233322211 1223579999985
Q ss_pred C
Q 023723 83 P 83 (278)
Q Consensus 83 ~ 83 (278)
+
T Consensus 125 ~ 125 (209)
T PRK11188 125 M 125 (209)
T ss_pred C
Confidence 4
No 134
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=88.91 E-value=1 Score=43.80 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=36.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
=.++|+|||.|.+++++.+ | +..|.++|++++|+.--+.|-.
T Consensus 385 k~llDv~CGTG~iglala~-~--~~~ViGvEi~~~aV~dA~~nA~ 426 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALAR-G--VKRVIGVEISPDAVEDAEKNAQ 426 (534)
T ss_pred cEEEEEeecCCceehhhhc-c--ccceeeeecChhhcchhhhcch
Confidence 3579999999999999976 4 5799999999999988887753
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=88.72 E-value=2.6 Score=36.57 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=34.1
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHH
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYE 53 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~ 53 (278)
.-+||++.||.|--.+-|-..| + .|.|+|+++.|++...
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G--~-~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQG--H-EVLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCC--C-eEEEEccCHHHHHHHH
Confidence 3599999999999999998889 3 6899999999999753
No 136
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.71 E-value=2 Score=36.96 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=36.3
Q ss_pred CCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
..-+|||+.||.|.++.-+.+. |- -..|.++|+++...+.-++|..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~-~~~V~~vE~~~~~~~~a~~~l~ 122 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGK-SGKVVTIERIPELAEKAKKTLK 122 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 3468999999999999776544 31 2378999999999988888764
No 137
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.41 E-value=1.8 Score=38.57 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=60.8
Q ss_pred CCCeEEeeecchhhHHHHHHh-cCCCceEEEEEcCCHHHHHHHHHHcCCCC-c---cccccccccccccCCCEEEeCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGHRP-Y---QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~-aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~---~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
...+|||+-||.|+.+.-+.. .| -.|.++|+++..++.-+.+.+... + ..+.... ......+|+++...-.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~---~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYG---AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcC---CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeEEEEEhhhH
Confidence 346899999999998877644 34 268999999999998888876421 1 1221111 1122468998874322
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
..++ .+.+..++.++.+.++|- +++.+
T Consensus 128 ~h~~--------~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 128 LHLS--------YADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred HhCC--------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1111 113345777788889994 44444
No 138
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=87.87 E-value=3.5 Score=34.82 Aligned_cols=104 Identities=9% Similarity=-0.079 Sum_probs=59.4
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC------ccccccccc--cccccCCCEEEeC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP------YQAKRKPLS--FRCQLLNNQLLRS 82 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~------~~~~~~~~~--~~~~~~~Dll~~g 82 (278)
..-++||+-||.|.+...+....- -..+.++|+++..++.-+.|..... +..+..... ......+|.++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 346899999999999988877642 2478999999987766555532211 122211111 1122368999988
Q ss_pred CCCCCCCcccccCCCCCCCCchHHHHhhhcCCcEE
Q 023723 83 PSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVER 117 (278)
Q Consensus 83 ~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~ 117 (278)
+|..-+.....++.. ....++.++.+.++|.-.
T Consensus 95 ~pdpw~k~~h~~~r~--~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 95 FPDPWPKKRHNKRRI--TQPHFLKEYANVLKKGGV 127 (194)
T ss_pred CCCcCCCCCcccccc--CCHHHHHHHHHHhCCCCE
Confidence 874332211100001 112344456777888543
No 139
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=87.75 E-value=1.5 Score=39.91 Aligned_cols=85 Identities=12% Similarity=-0.109 Sum_probs=54.2
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC--CC--cccccccccc-c--cccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH--RP--YQAKRKPLSF-R--CQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~--~~--~~~~~~~~~~-~--~~~~~Dll~~g~P 84 (278)
.-.++|.-+|.||.+..+-...-+--.|.|+|.|+.|.+.-+++... .. +.++...+.. . ....+|.++.-+=
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 35899999999999999887741113689999999999998877643 11 2222111110 1 2236999998766
Q ss_pred CCCCCcccccCC
Q 023723 85 PLLGNDDMTVIT 96 (278)
Q Consensus 85 Cq~fS~ag~~~g 96 (278)
|..+=.-...+|
T Consensus 100 vSs~Qld~~~RG 111 (296)
T PRK00050 100 VSSPQLDDAERG 111 (296)
T ss_pred ccccccCCCcCC
Confidence 655443333333
No 140
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=87.52 E-value=1 Score=37.81 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=44.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRS 82 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g 82 (278)
..+++|+.||.|.+++-+...+- -..|.++|.++.+.+..+.|...... ..+...+ .....+|+++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~--~~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF--QHEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc--cccCCccEEEeh
Confidence 56899999999988877655442 23589999999887776665422211 2222222 123578988864
No 141
>PRK11524 putative methyltransferase; Provisional
Probab=87.29 E-value=0.66 Score=41.87 Aligned_cols=46 Identities=11% Similarity=-0.004 Sum_probs=39.2
Q ss_pred CCCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
+.+.=.|||-|+|.|.-.++.++.| ....++|+++..+++-+....
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 4445579999999999999999999 577899999999988777653
No 142
>PRK04266 fibrillarin; Provisional
Probab=87.07 E-value=1.5 Score=38.31 Aligned_cols=44 Identities=14% Similarity=-0.033 Sum_probs=33.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
.-+|+|+.||.|+++..+.+.-- --.|+++|+++...+...++.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a 116 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVA 116 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHh
Confidence 45899999999999988876420 137999999998777655443
No 143
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=86.98 E-value=1.5 Score=40.52 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=59.8
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-------cccccccccccccCCCEEEeCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
...+|||+-||.|.++..+.+.| ..|.++|.++..++..+.+...... ..+...+. .....+|++++.-
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhh
Confidence 34689999999999999888877 3689999999999988876432111 11111111 1224688888743
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
- -....|+ ...+.++.+.++|. .+++.
T Consensus 207 v---------LeHv~d~-~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 207 V---------IEHVANP-AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred H---------HHhcCCH-HHHHHHHHHHcCCCcEEEEE
Confidence 1 1112232 23555677778994 44444
No 144
>PRK13699 putative methylase; Provisional
Probab=86.85 E-value=0.75 Score=40.21 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=36.6
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
.+.=.|+|-|+|.|....+.++.| ....++|+++..+++-...+
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHH
Confidence 344579999999999999999999 46679999998887766554
No 145
>PRK08317 hypothetical protein; Provisional
Probab=86.54 E-value=2.7 Score=35.81 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=54.9
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC----C-ccccccccccccccCCCEEEeCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR----P-YQAKRKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~----~-~~~~~~~~~~~~~~~~Dll~~g~PCq 86 (278)
..+|+|+.||.|.+...+.....+...+.++|+++...+.-+.+.... . ...+..... .....+|+++...--.
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDRVLQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEechhh
Confidence 468999999999998877654211347899999999888777762111 1 111211111 1234688887642110
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCc
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPV 115 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~ 115 (278)
...| ...++.++.+.++|.
T Consensus 99 ---------~~~~-~~~~l~~~~~~L~~g 117 (241)
T PRK08317 99 ---------HLED-PARALAEIARVLRPG 117 (241)
T ss_pred ---------ccCC-HHHHHHHHHHHhcCC
Confidence 1112 124566677778884
No 146
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=86.43 E-value=3.5 Score=35.83 Aligned_cols=102 Identities=8% Similarity=-0.036 Sum_probs=62.0
Q ss_pred CCCeEEeeecchhhHHHHHHhcC-CCceEEEEEcCCHHHHHHHHHHcCCCCcc-cc---ccccccccccCCCEEEeCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKAD-VSAQVVEAFDINDKANDVYELNFGHRPYQ-AK---RKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG-~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-~~---~~~~~~~~~~~~Dll~~g~PC 85 (278)
..-++||+=||.|.....+.+.. .+--.+.++|+++..++.-+.+....... .. ..++.....+++|+++.+...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 34689999999999988776532 01236889999999988888775432111 00 011111223467888876654
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
+-++. +.+..++.++.+.++|. +++.|
T Consensus 133 ~~~~~--------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 133 QFLPP--------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred hhCCH--------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 32211 12345677788889994 55556
No 147
>PRK06922 hypothetical protein; Provisional
Probab=86.19 E-value=2.3 Score=42.85 Aligned_cols=106 Identities=10% Similarity=-0.011 Sum_probs=64.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-----ccccccccc-cccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-----YQAKRKPLS-FRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-----~~~~~~~~~-~~~~~~~Dll~~g~PC 85 (278)
..+|||+.||.|.+...+....- --.+.++|+++.+++..+++.+... +..+...+. ......+|+++.+++-
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 46899999999998877765321 2477899999999988887753321 122222221 1223468999988764
Q ss_pred CCC-C---cccccCCCC-CCCCchHHHHhhhcCC--cEEEEE
Q 023723 86 LLG-N---DDMTVITKH-DQPDDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 86 q~f-S---~ag~~~g~~-d~r~~l~~~~i~~~~P--~~~i~E 120 (278)
+.+ + ..+.. .+ +.....+.++.+.++| .+++.|
T Consensus 498 H~L~syIp~~g~~--f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKK--FNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred Hhhhhhccccccc--ccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 432 1 11111 11 1223455667778999 566666
No 148
>PTZ00146 fibrillarin; Provisional
Probab=86.08 E-value=4.6 Score=36.76 Aligned_cols=96 Identities=8% Similarity=-0.097 Sum_probs=53.0
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHc---CCCC-ccccccccc--cccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNF---GHRP-YQAKRKPLS--FRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~---~~~~-~~~~~~~~~--~~~~~~~Dll~~g~P 84 (278)
..+||||.||.|.++.-+... |- --.|+|+|+++.+.+-+..-. ++.. +..|..... ......+|+++....
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva 211 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA 211 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence 369999999999998877654 21 137999999976542222211 2211 222211110 001246899987653
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
| .|....+..++.+.++|- .|+++
T Consensus 212 -~-----------pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 -Q-----------PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -C-----------cchHHHHHHHHHHhccCCCEEEEE
Confidence 2 122223444566678884 44444
No 149
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.90 E-value=4.2 Score=36.64 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=59.5
Q ss_pred CCCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc--c--cccccccccCCCEEEeCCC
Q 023723 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK--R--KPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~--~--~~~~~~~~~~~Dll~~g~P 84 (278)
...+-.||+.=-|.|-++..+-++| ..|.|+|+|+.-+.-.++-+..+..... + .+.-..+.+.+|+.+.-.|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLP 132 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCC
Confidence 3456689999999999999999999 6889999999999999998877764222 0 1111234578999999888
Q ss_pred CCCCC
Q 023723 85 PLLGN 89 (278)
Q Consensus 85 Cq~fS 89 (278)
-|=-|
T Consensus 133 yqISS 137 (315)
T KOG0820|consen 133 YQISS 137 (315)
T ss_pred ccccC
Confidence 76544
No 150
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=85.50 E-value=1.7 Score=34.31 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=37.8
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
+++|+-||.|-.++.+...+. -..++++|.++.+.+.++.|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHH
Confidence 589999999999999988873 23799999999999999998753
No 151
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=85.21 E-value=1.3 Score=41.47 Aligned_cols=45 Identities=31% Similarity=0.357 Sum_probs=36.4
Q ss_pred CCeEEeeecchh--hHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 12 AWRVLEFYSGIG--GMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 12 ~~~v~dLFsG~G--g~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
..+|+|-|||.| |++.+.|.-. ..|+++||+++|+++-+.|....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~---~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV---VKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc---cEEEEccCCHHHHHHHHHHHHhc
Confidence 678999999887 5666666543 48899999999999999997543
No 152
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=85.00 E-value=3.6 Score=36.18 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=62.4
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCCCCCCCCc
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
..-+|||+-||.|.+...+..... -..|.++|+++..++.-+.+.- .....+...+. ....+|+++.....+-+.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~- 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGV-DARTGDVRDWK--PKPDTDVVVSNAALQWVP- 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC--CCCCceEEEEehhhhhCC-
Confidence 346899999999999988877631 1367999999999887765421 11223322221 235799999987754321
Q ss_pred ccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 91 DMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 91 ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
|. ..++.++.+.++|- .++++
T Consensus 104 --------d~-~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 --------EH-ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --------CH-HHHHHHHHHhCCCCcEEEEE
Confidence 21 34666777888995 45555
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=84.74 E-value=3.4 Score=42.23 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=31.5
Q ss_pred EEEEEcCCHHHHHHHHHHcCCCCccc-------cccccccc-cccCCCEEEeCCC
Q 023723 38 VVEAFDINDKANDVYELNFGHRPYQA-------KRKPLSFR-CQLLNNQLLRSPS 84 (278)
Q Consensus 38 ~v~a~e~~~~a~~~y~~N~~~~~~~~-------~~~~~~~~-~~~~~Dll~~g~P 84 (278)
.++++|+|+.|++.-+.|.....+.+ +...+... ....+|+|+.-||
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 58999999999999999976544322 11111111 1134899999999
No 154
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=84.49 E-value=5.4 Score=37.13 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=59.5
Q ss_pred CCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc---cccccccccccccCCCEEEeCCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY---QAKRKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~---~~~~~~~~~~~~~~~Dll~~g~PCq 86 (278)
...+|||+-||.|.+.+.+.+. + ...+.++|+++...+.-+++.+...+ ..+..... .....+|+++....-.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~--~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD--AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCC-CCCCceeEEEEcChhh
Confidence 4579999999999988877553 3 24688999999998888777643221 12211111 1123589888742211
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
. ..|. ...+.++.+.++|. ++++|
T Consensus 190 ~---------~~d~-~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 190 Y---------WPDP-QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred h---------CCCH-HHHHHHHHHhcCCCcEEEEEE
Confidence 1 1122 24677788888994 34455
No 155
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=84.10 E-value=2.3 Score=37.24 Aligned_cols=50 Identities=20% Similarity=-0.014 Sum_probs=37.2
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~ 61 (278)
.-+++|+.+|+|...+.+-.+-..--.|.++|+++.+.+.-+.|+....+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl 118 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV 118 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 45899999999987666554310023789999999999999999865543
No 156
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=84.04 E-value=1.7 Score=37.56 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=33.8
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHH
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVY 52 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y 52 (278)
.-+|||+.||.|--..-|-+.|. .|.|+|+++.|++..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~ 72 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQF 72 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHH
Confidence 35999999999999999999993 689999999999974
No 157
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=83.72 E-value=0.64 Score=44.14 Aligned_cols=45 Identities=20% Similarity=0.224 Sum_probs=39.2
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~ 61 (278)
.+-|+|||+|-+++-+..-| ..|+|+|.++.+++.+++|.+-..+
T Consensus 252 vv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred hhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhcccccc
Confidence 57899999999998887777 4889999999999999999876543
No 158
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=83.59 E-value=3 Score=33.18 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=57.9
Q ss_pred CCCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc--cccccccccCCCEEEeCCCCC
Q 023723 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR--KPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~--~~~~~~~~~~~Dll~~g~PCq 86 (278)
.....+|||+-||.|.+...+...| + .+.++|+++.+++. ....... ..........+|++++.--
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~-~~~g~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~~fD~i~~~~~-- 87 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--F-EVTGVDISPQMIEK-------RNVVFDNFDAQDPPFPDGSFDLIICNDV-- 87 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--S-EEEEEESSHHHHHH-------TTSEEEEEECHTHHCHSSSEEEEEEESS--
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--C-EEEEEECCHHHHhh-------hhhhhhhhhhhhhhccccchhhHhhHHH--
Confidence 4557899999999999999999998 4 67899999999888 1111110 0111123357898887521
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCC-cEEEEE
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDP-VERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P-~~~i~E 120 (278)
+ ..+.| ....+.++.+.++| -++++.
T Consensus 88 -l------~~~~d-~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 88 -L------EHLPD-PEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp -G------GGSSH-HHHHHHHHHHCEEEEEEEEEE
T ss_pred -H------hhccc-HHHHHHHHHHhcCCCCEEEEE
Confidence 1 11222 22455556667888 355555
No 159
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=83.54 E-value=1.9 Score=41.63 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=42.7
Q ss_pred CCCeEEeeecchhhHHHHHHhcCC---CceEEEEEcCCHHHHHHHHH--HcCC---CC--ccccccccccccccCCCEEE
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADV---SAQVVEAFDINDKANDVYEL--NFGH---RP--YQAKRKPLSFRCQLLNNQLL 80 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~---~~~~v~a~e~~~~a~~~y~~--N~~~---~~--~~~~~~~~~~~~~~~~Dll~ 80 (278)
+...|+|+=||-|.++...-+||- ....|+|+|.++.|..+.+. |..+ .. +..+...++. ..++|||+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIV 263 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIV 263 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEE
Confidence 467899999999999976666651 14689999999999988743 3222 21 2233222222 23799987
Q ss_pred e
Q 023723 81 R 81 (278)
Q Consensus 81 ~ 81 (278)
-
T Consensus 264 S 264 (448)
T PF05185_consen 264 S 264 (448)
T ss_dssp E
T ss_pred E
Confidence 4
No 160
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=83.02 E-value=4.9 Score=37.09 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=34.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
.-+|+|+.||.|.++.-+.+..-.-..|.++|+++...+.-+.|..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~ 126 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR 126 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 4689999999999988776542101258899999998777776653
No 161
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=81.93 E-value=2.1 Score=36.53 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=34.1
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
++.||=+|.|-+++-...+- +-|.|+|.|+......++|.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred ceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcC
Confidence 57899999999997665553 78999999999999999995
No 162
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=81.84 E-value=5.5 Score=37.99 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=53.8
Q ss_pred CCCCeEEeeecchhhHH----HHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccc-----cccc-cCCCE
Q 023723 10 GEAWRVLEFYSGIGGMR----YSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLS-----FRCQ-LLNNQ 78 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~----~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~-----~~~~-~~~Dl 78 (278)
.+.-|++|+||-.||=. .-++.-| +|+|+|.+...++...+|....-+ +.+....+ ...+ +.+|=
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 34579999999999943 2344556 899999999999999999754432 11111111 1112 26999
Q ss_pred EEeCCCCCCCCcccc
Q 023723 79 LLRSPSPLLGNDDMT 93 (278)
Q Consensus 79 l~~g~PCq~fS~ag~ 93 (278)
++.--||.+--...+
T Consensus 316 VLLDAPCSGtgvi~K 330 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISK 330 (460)
T ss_pred eeecCCCCCCccccc
Confidence 999999988444333
No 163
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=81.76 E-value=2.6 Score=39.02 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=32.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
...+||||+||=||--.=+..+++ ..++++|+...+++--+.-+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHH
Confidence 679999999999998888888884 89999999987766544444
No 164
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=81.73 E-value=3.8 Score=34.63 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC---C-ccccccccccccccCCCEEEeCCCCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR---P-YQAKRKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~---~-~~~~~~~~~~~~~~~~Dll~~g~PCq 86 (278)
...+|+|+.||.|.....+.+.+.+...+.++|+++.+++.-+.|++.. . ...+..... .....+|+++...--.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 4579999999999999988877631137899999999999988887511 1 112211111 1224689887532211
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
...+ ...++..+.+.++|. ++++|
T Consensus 118 ---------~~~~-~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 ---------NVTD-IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred ---------Cccc-HHHHHHHHHHHcCCCcEEEEEE
Confidence 1122 223555566667884 55566
No 165
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=81.48 E-value=1.9 Score=35.83 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHH
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDK 47 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~ 47 (278)
...+|+||.|+.||++..+.+.+.....|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4689999999999999888877633578999999877
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=80.45 E-value=3.4 Score=34.33 Aligned_cols=47 Identities=26% Similarity=0.157 Sum_probs=35.4
Q ss_pred CCCCCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 8 NDGEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 8 ~~~~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
...+..+||||=||+|-.++.+... + ...|.+.|.++ +....+.|-.
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~--~~~Vv~TD~~~-~l~~l~~Ni~ 89 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG--AARVVLTDYNE-VLELLRRNIE 89 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHH
T ss_pred hhcCCceEEEECCccchhHHHHHhccC--CceEEEeccch-hhHHHHHHHH
Confidence 3455679999999999888888777 4 46788899999 9999888864
No 167
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=80.30 E-value=4.1 Score=34.75 Aligned_cols=69 Identities=13% Similarity=-0.063 Sum_probs=46.3
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
.-+||||=||-|-+=.-|... + -...++|+|++.+..--++--....+|....+.......+|.++.+-
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~---v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQ---VDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcC---CeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 368999999999987777663 4 36799999999877766664333223332223333445788888763
No 168
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=79.65 E-value=3.4 Score=35.95 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=37.2
Q ss_pred CCCCCeEEeeecchhhHH--HHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 9 DGEAWRVLEFYSGIGGMR--YSLMKADVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~--~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
+..++++-|=|||.|.+- +||-.-. ...-|++.|+|++|.+.-++|..-.
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~-~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRR-RLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGG-GEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhH-HHHhHhcccCCHHHHHHHHHhhhhc
Confidence 356899999999999974 6765543 2689999999999999999997543
No 169
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=79.05 E-value=5.3 Score=35.56 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=58.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCC--ceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccccccccCCCEEEeCCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVS--AQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLSFRCQLLNNQLLRSPSPLLG 88 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~--~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~~~~~~~~Dll~~g~PCq~f 88 (278)
.-+|||+-||.|.+...+....-. ...+.++|+++.+++.-+.++++..+ ..+...+. .....+|+++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp-~~~~sfD~I~~~~----- 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLP-FADQSLDAIIRIY----- 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCC-CcCCceeEEEEec-----
Confidence 467999999999998887654210 12579999999999998888776542 22222221 1234689998532
Q ss_pred CcccccCCCCCCCCchHHHHhhhcCCcEEEEE
Q 023723 89 NDDMTVITKHDQPDDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 89 S~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E 120 (278)
+ + ..+.++.|.++|.-.++=
T Consensus 160 ~----------~--~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 160 A----------P--CKAEELARVVKPGGIVIT 179 (272)
T ss_pred C----------C--CCHHHHHhhccCCCEEEE
Confidence 1 1 124567778888544443
No 170
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=78.89 E-value=5.2 Score=37.18 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=45.1
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc----ccccccc-ccCCCEEEeCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR----KPLSFRC-QLLNNQLLRSP 83 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~----~~~~~~~-~~~~Dll~~g~ 83 (278)
..-.|+|.=||.|.++.=...|| .+.|+|+|-++-|..+-+.--.+ .+.+.+ -.++..+ ..++|+||.-|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS~MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLPEk~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEASEMAQYARKLVASN-NLADRITVIPGKIEDIELPEKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehhHHHHHHHHHHhcC-CccceEEEccCccccccCchhccEEEecc
Confidence 34578999999999999999999 68999999887664443332222 111110 1122222 34799998654
No 171
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=78.87 E-value=5.5 Score=33.98 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHH
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL 54 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~ 54 (278)
++-++|||=||-|--++-|-+.| + .|.|+|+++.|++..+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~-~VtAvD~s~~al~~l~~ 70 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--F-DVTAVDISPVALEKLQR 70 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--C-eEEEEECCHHHHHHHHH
Confidence 46799999999999999999999 4 58999999999887654
No 172
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=77.59 E-value=6.8 Score=33.60 Aligned_cols=67 Identities=22% Similarity=0.142 Sum_probs=43.6
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC---c-cccccccccccccCCCEEEeCCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP---Y-QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~---~-~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
-+++|+=||+|-++..|-... +-+.++|+.+.|++.-+....+.. + ..+. ........+|+|+.+-=
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv--p~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADV--PEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T--TT---SS-EEEEEEES-
T ss_pred ceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC--CCCCCCCCeeEEEEehH
Confidence 479999999999999986654 889999999999999988765533 1 1111 12234568899987643
No 173
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=76.90 E-value=7.6 Score=37.46 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc-----cccccccccccccCCCEEEeCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY-----QAKRKPLSFRCQLLNNQLLRSPSP 85 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~-----~~~~~~~~~~~~~~~Dll~~g~PC 85 (278)
.-+|||+-||.|+....+... | ..|.++|+++.+.+.-+.|...... ..+..... .....+|+++...-
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~---~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~- 341 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFD---VHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDT- 341 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCc-
Confidence 468999999999988777654 4 3689999999999888877643211 11111111 11235888886311
Q ss_pred CCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 86 LLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 86 q~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
-....| ...++.++.+.++|. .++++
T Consensus 342 --------l~h~~d-~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 342 --------ILHIQD-KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred --------ccccCC-HHHHHHHHHHHcCCCeEEEEE
Confidence 111222 235667788889994 33344
No 174
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=76.62 E-value=3.3 Score=37.05 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHH
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN 55 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N 55 (278)
.++++|.=||.|-++.-|-+.| ..|.++|..++++++++.-
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHh
Confidence 3679999999999999999999 5789999999999999877
No 175
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=76.53 E-value=5.6 Score=37.48 Aligned_cols=68 Identities=6% Similarity=-0.052 Sum_probs=44.4
Q ss_pred EEEEEcCCHHHHHHHHHHcCCCCcccccc----ccccccc--cCCCEEEeCCCCCCCCcccccCCCCCCCCchHHHHhhh
Q 023723 38 VVEAFDINDKANDVYELNFGHRPYQAKRK----PLSFRCQ--LLNNQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLES 111 (278)
Q Consensus 38 ~v~a~e~~~~a~~~y~~N~~~~~~~~~~~----~~~~~~~--~~~Dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~ 111 (278)
+++++|+|+..++.-+.|--...+.|.+. .+..... ...|+++.-||= |.+.+.+..-..||.++.+.
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY------GeRlg~~~~v~~LY~~fg~~ 329 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY------GERLGSEALVAKLYREFGRT 329 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCc------chhcCChhhHHHHHHHHHHH
Confidence 67899999999999999987666554421 1111222 478999999993 55544332234477776654
No 176
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=76.03 E-value=8.1 Score=36.49 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=56.7
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCccccccccccccccCCCEEEeCCCCCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
.-+|||+-||.|++..-+.+. | . .|.++|+++...+.-+.+.....+.-...+.... ...+|+++...-. .-
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g--~-~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Ivs~~~~---eh 240 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYG--V-SVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIVSVGMF---EH 240 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCC--C-EEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEEEeCch---hh
Confidence 458999999999998766554 5 3 6889999999999888887532210000111111 2468888753211 11
Q ss_pred ccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 91 DMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 91 ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
.|. ......+.++.+.++|. .+++.
T Consensus 241 vg~-----~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 241 VGP-----KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCh-----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 111 11123555677778885 33444
No 177
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=75.31 E-value=3.3 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=27.8
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHH
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKA 48 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a 48 (278)
.-+|||+-||.|+++..+......-..|+++|+++..
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 4589999999999988775543112368999999854
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=75.02 E-value=19 Score=32.34 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=65.1
Q ss_pred CCCCCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc-ccc----ccccccccccCCCEEEe
Q 023723 8 NDGEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY-QAK----RKPLSFRCQLLNNQLLR 81 (278)
Q Consensus 8 ~~~~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~----~~~~~~~~~~~~Dll~~ 81 (278)
++..+-++||+=||.|...+++... + ....+.++|.++.+.+..+.-...... ... ....+..+....||+++
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~ 108 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIA 108 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEE
Confidence 3456679999999999998887654 2 357888999999998887665433321 111 01112223345599998
Q ss_pred CCCCCCCCcccccCCCCCCCCchHHHHhhhcCCcEEEEE
Q 023723 82 SPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE 120 (278)
Q Consensus 82 g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E 120 (278)
+.-=...+. ..|..+...+-+...+-.+|+|
T Consensus 109 s~~L~EL~~--------~~r~~lv~~LW~~~~~~LVlVE 139 (274)
T PF09243_consen 109 SYVLNELPS--------AARAELVRSLWNKTAPVLVLVE 139 (274)
T ss_pred ehhhhcCCc--------hHHHHHHHHHHHhccCcEEEEc
Confidence 854322211 2344444445455788899999
No 179
>PLN03075 nicotianamine synthase; Provisional
Probab=74.63 E-value=16 Score=33.39 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=61.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCC-CceEEEEEcCCHHHHHHHHHHcCC-CCccc-------cccccccccccCCCEEEe
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADV-SAQVVEAFDINDKANDVYELNFGH-RPYQA-------KRKPLSFRCQLLNNQLLR 81 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~-~~~~v~a~e~~~~a~~~y~~N~~~-~~~~~-------~~~~~~~~~~~~~Dll~~ 81 (278)
..=+|+|+=||.|+++.-+..++. +--.+..+|+|+.+++.-++++.. ..+.+ +.... .....++|+++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~-~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV-TESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc-ccccCCcCEEEE
Confidence 456899999999988766554331 223688999999999999998853 22222 11111 112357998886
Q ss_pred CCCCCCCCcccccCCCCCCCCchHHHHhhhcCCcEEEE
Q 023723 82 SPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFL 119 (278)
Q Consensus 82 g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~ 119 (278)
= -+-+|+.. .+...+.++.+..+|--+++
T Consensus 202 ~-ALi~~dk~--------~k~~vL~~l~~~LkPGG~Lv 230 (296)
T PLN03075 202 A-ALVGMDKE--------EKVKVIEHLGKHMAPGALLM 230 (296)
T ss_pred e-cccccccc--------cHHHHHHHHHHhcCCCcEEE
Confidence 5 33333322 22356777888899965544
No 180
>PLN02366 spermidine synthase
Probab=73.11 E-value=14 Score=33.77 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
.-+||++=+|.|++...+.+.. +.+.|..+|+|+..++..+..|+..
T Consensus 92 pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~ 138 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDL 138 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhh
Confidence 4589999999999887776653 2578899999999999999888753
No 181
>PRK01581 speE spermidine synthase; Validated
Probab=72.79 E-value=11 Score=35.46 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHH
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL 54 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~ 54 (278)
+-+||++=+|.|+....+.+.. +.+.|.++|+|+..++.-+.
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARN 192 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHh
Confidence 4589999999988765555443 15789999999999888875
No 182
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=71.95 E-value=21 Score=32.20 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccccc--c--ccccccccCCCEEEeCCCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKR--K--PLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~--~--~~~~~~~~~~Dll~~g~PCq~ 87 (278)
.-+++|+-||.|.+...+-+..-.. .+.++|+ +.+++.-+.|.......+.+ . +......+..|+++.+--.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~l-- 225 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL-- 225 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhh--
Confidence 3599999999999999887775223 4577897 67777777776443322110 0 0111123456776653211
Q ss_pred CCcccccCCCCCCC-CchHHHHhhhcCC--cEEEEE
Q 023723 88 GNDDMTVITKHDQP-DDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 88 fS~ag~~~g~~d~r-~~l~~~~i~~~~P--~~~i~E 120 (278)
...+++. ..++.++.+.++| ++++.|
T Consensus 226 -------h~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 226 -------YSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred -------hcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1122222 3466677788999 677888
No 183
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=71.90 E-value=10 Score=32.24 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=36.4
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
-.++|.=||+|.++.=+..++- --.|+|+|-|+.|.++-+.|.-
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~ 79 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAA 79 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHH
Confidence 4789999999988876666674 4578999999999999999964
No 184
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=70.93 E-value=13 Score=33.68 Aligned_cols=101 Identities=11% Similarity=-0.006 Sum_probs=58.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHH----cCCCCc---cccccc-cccccc---cCCCEEE
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN----FGHRPY---QAKRKP-LSFRCQ---LLNNQLL 80 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N----~~~~~~---~~~~~~-~~~~~~---~~~Dll~ 80 (278)
..++|||=||.|-.+..|.+++.....+.++|+++...+..+.+ +|...+ ..+... ...... .+..+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46899999999999998887742114689999999876555544 454332 222111 111111 1233555
Q ss_pred eCCCCCCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 81 RSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 81 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
.|.++..|+ .++...++.++.+.++|- .|++-
T Consensus 144 ~gs~~~~~~--------~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT--------PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC--------HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 555544433 122334566677778894 55555
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=70.90 E-value=8.8 Score=35.64 Aligned_cols=66 Identities=18% Similarity=0.044 Sum_probs=44.8
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHH---HHHHHHHcCCCCc---cccccccccccccCCCEEEe
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKA---NDVYELNFGHRPY---QAKRKPLSFRCQLLNNQLLR 81 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a---~~~y~~N~~~~~~---~~~~~~~~~~~~~~~Dll~~ 81 (278)
=+|+|.=||.|-+|+=.-+|| ...|+|+|...-| .+..+.|.-...+ ...+.++ .++.+++|+++-
T Consensus 62 K~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhC--cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEee
Confidence 479999999999999889999 6889999887655 5555556433322 1212222 223568888874
No 186
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=70.34 E-value=9.3 Score=35.15 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=57.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHH--c-C-CCC--c-cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN--F-G-HRP--Y-QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N--~-~-~~~--~-~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|||+-||.|.+...+...| ...|.++|.++....-.++. + + ... + ..+...+.. ...+|+++..-
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--~~~FD~V~s~~- 197 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--LKAFDTVFSMG- 197 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--cCCcCEEEECC-
Confidence 4589999999999999998888 46799999998765433321 1 1 111 1 111111211 34689888421
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
.-....|+. .++.++.+.++|. .+++|
T Consensus 198 --------vl~H~~dp~-~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 198 --------VLYHRRSPL-DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred --------hhhccCCHH-HHHHHHHHhcCCCcEEEEE
Confidence 111122332 4666777788995 56777
No 187
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=70.25 E-value=16 Score=31.15 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=55.2
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcc-------ccccccccccccCCCEEEeCCCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQ-------AKRKPLSFRCQLLNNQLLRSPSPL 86 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~-------~~~~~~~~~~~~~~Dll~~g~PCq 86 (278)
+|||+-||.|++..-+.+..- --.|.++|+++...+.-+.++...... .+.... .....+|+++..--..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHHHH
Confidence 689999999998877655431 135789999999988888877543221 111111 0123688887421111
Q ss_pred CCCcccccCCCCCCCCchHHHHhhhcCCc--EEEEE
Q 023723 87 LGNDDMTVITKHDQPDDSWDKLLESCDPV--ERFLE 120 (278)
Q Consensus 87 ~fS~ag~~~g~~d~r~~l~~~~i~~~~P~--~~i~E 120 (278)
. ..+ ...++..+.+.++|. +++.|
T Consensus 79 ------~---~~~-~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 79 ------H---IKD-KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ------h---CCC-HHHHHHHHHHHcCCCCEEEEEE
Confidence 1 112 234566677778994 44444
No 188
>PRK04457 spermidine synthase; Provisional
Probab=68.39 E-value=13 Score=33.17 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=36.8
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
.-+|+++-+|.|.+...+...- +--.+.++|+|+..++.-+.+|..
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~ 112 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFEL 112 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCC
Confidence 3479999999999988775542 124689999999999999999853
No 189
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=65.26 E-value=18 Score=34.30 Aligned_cols=101 Identities=9% Similarity=-0.027 Sum_probs=59.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC------ccccccc-cccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP------YQAKRKP-LSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~------~~~~~~~-~~~~~~~~~Dll~~g~P 84 (278)
...+||+-||.|.+.+.+-...- -..+.++|+++.++..-..+..... +..+... ........+|.++.-+|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 45899999999999988876642 3578999999888666555432211 1222111 11223457899999888
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCcEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPVER 117 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~ 117 (278)
+. |...-+++ +- ....+.++.|.++|.-.
T Consensus 202 dP-W~KkrHRR-lv--~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 202 VP-WDKKPHRR-VI--SEDFLNEALRVLKPGGT 230 (390)
T ss_pred CC-ccccchhh-cc--HHHHHHHHHHHcCCCcE
Confidence 64 32211110 10 01233446667888643
No 190
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=64.79 E-value=14 Score=33.90 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=56.3
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHH---HcCCC-C--c-cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL---NFGHR-P--Y-QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~---N~~~~-~--~-~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|+|+=||.|.+...+...| ...|.++|.++.....+++ ..... . + ..+...+.. ...+|+++..--
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--~~~FD~V~s~gv 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--LYAFDTVFSMGV 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--CCCcCEEEEcch
Confidence 4589999999999999988888 4678999999976544322 11111 1 1 111111111 236888875322
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCc-EEEEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPV-ERFLE 120 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~-~~i~E 120 (278)
. ....|+ ...+.++.+.++|. .+++|
T Consensus 198 L---------~H~~dp-~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 198 L---------YHRKSP-LEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred h---------hccCCH-HHHHHHHHHhcCCCCEEEEE
Confidence 1 112222 23566677778994 66667
No 191
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.68 E-value=6.8 Score=35.14 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.2
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHH---HHHHHHHc
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKA---NDVYELNF 56 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a---~~~y~~N~ 56 (278)
.+.|+|||.|-.+.=|..+| .-|.|+|+.-.. .++|-.|-
T Consensus 30 ~f~DiFaGtGVV~~~fkk~~---n~iiaNDle~ysylln~~yi~N~ 72 (330)
T COG3392 30 IFCDIFAGTGVVGRFFKKAG---NKIIANDLEYYSYLLNQNYIGNI 72 (330)
T ss_pred eeeeeccCccHHHHHHHHhc---chhhhchHHHHHHHHHHHHhhcc
Confidence 68999999999999999999 578889997664 44444443
No 192
>PLN02476 O-methyltransferase
Probab=64.44 E-value=15 Score=33.19 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=38.6
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~ 61 (278)
.=++||+.+|+|..++.+-.+--+--.|.++|.++.+.+.-+.|+....+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl 168 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV 168 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 45899999999999987765310012589999999999999999965544
No 193
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=64.43 E-value=14 Score=34.42 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=46.6
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-ccccccccccccccCCCEEEeCCCCCC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP-YQAKRKPLSFRCQLLNNQLLRSPSPLL 87 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~~~~~~~~~~~~~~~~Dll~~g~PCq~ 87 (278)
....+++||-|+.||++.-+.+.| . .|+|+|..+-+-.. .+.|... +..+...... ....+|+++.---|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~-~V~AVD~g~l~~~L--~~~~~V~h~~~d~fr~~p-~~~~vDwvVcDmve~P 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--M-FVTAVDNGPMAQSL--MDTGQVEHLRADGFKFRP-PRKNVDWLVCDMVEKP 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--C-EEEEEechhcCHhh--hCCCCEEEEeccCcccCC-CCCCCCEEEEecccCH
Confidence 456799999999999999999999 3 78999977655433 2223222 1222111111 1446888888776666
No 194
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=63.63 E-value=23 Score=28.09 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=48.0
Q ss_pred CCCCCeEEeeecchhhHHHHHHh----cCCCceEEEEEcCCHHHHHHHHHHcCCCC--cccc----ccccc-cccccCCC
Q 023723 9 DGEAWRVLEFYSGIGGMRYSLMK----ADVSAQVVEAFDINDKANDVYELNFGHRP--YQAK----RKPLS-FRCQLLNN 77 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~~gl~~----aG~~~~~v~a~e~~~~a~~~y~~N~~~~~--~~~~----~~~~~-~~~~~~~D 77 (278)
.....+++|+.||-|=++..+.. ... --.|.++|.++...+.-...-.... +... ..... .......+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSP-NLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCC-CCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCe
Confidence 45678999999999999888776 112 2477899999876554433321111 1010 01111 11145677
Q ss_pred EEEeCCCCCCCCc
Q 023723 78 QLLRSPSPLLGND 90 (278)
Q Consensus 78 ll~~g~PCq~fS~ 90 (278)
+++|=-.|-+.|.
T Consensus 102 ~~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 102 ILVGLHACGDLSD 114 (141)
T ss_pred EEEEeecccchHH
Confidence 7877777776654
No 195
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=62.55 E-value=14 Score=31.90 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=46.2
Q ss_pred CCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
...+|||+-+|.|=++.-+... | +.-.|.++|+++.-.+.-+.|.....+ ..+.. ........+|.|+.+.
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~-~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS-EGWPEEAPFDRIIVTA 149 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG-GTTGGG-SEEEEEESS
T ss_pred CCCEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh-hccccCCCcCEEEEee
Confidence 3579999999999888776654 4 223688999999988777777643221 22211 1112335789999887
Q ss_pred CCC
Q 023723 84 SPL 86 (278)
Q Consensus 84 PCq 86 (278)
-|.
T Consensus 150 a~~ 152 (209)
T PF01135_consen 150 AVP 152 (209)
T ss_dssp BBS
T ss_pred ccc
Confidence 654
No 196
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=61.25 E-value=17 Score=34.14 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=53.7
Q ss_pred CCeEEeeecchhhHHHHHHhcCCC-ce--EEEEEcCCHHHHHHHHHHcCCCC-----c-c-ccc----c---cccccccc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVS-AQ--VVEAFDINDKANDVYELNFGHRP-----Y-Q-AKR----K---PLSFRCQL 74 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~-~~--~v~a~e~~~~a~~~y~~N~~~~~-----~-~-~~~----~---~~~~~~~~ 74 (278)
.-+|||+||-.||=+..+.++... .+ .|.|+|.|........+-....+ + . +.. . +.......
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 358999999999999999888631 12 78999999988776665332211 1 1 110 1 11122456
Q ss_pred CCCEEEeCCCCCCCCcc
Q 023723 75 LNNQLLRSPSPLLGNDD 91 (278)
Q Consensus 75 ~~Dll~~g~PCq~fS~a 91 (278)
.+|=|+.--||.+-+..
T Consensus 236 ~fDrVLvDVPCS~Dgt~ 252 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTL 252 (375)
T ss_pred hcceeEEecccCCCccc
Confidence 79999999999987544
No 197
>PLN02823 spermine synthase
Probab=57.08 E-value=32 Score=31.93 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCeEEeeecchhhHHHHHHh-cCCCceEEEEEcCCHHHHHHHHHHcCCCC--ccccc--------cccccccccCCCEEE
Q 023723 12 AWRVLEFYSGIGGMRYSLMK-ADVSAQVVEAFDINDKANDVYELNFGHRP--YQAKR--------KPLSFRCQLLNNQLL 80 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~-aG~~~~~v~a~e~~~~a~~~y~~N~~~~~--~~~~~--------~~~~~~~~~~~Dll~ 80 (278)
+-+||.+=.|.|+...-+.+ .+ .+.|.++|+|+..++.-+.+++... +.+.. ...-......+|+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~--~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKT--VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCC--CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 34788887887777654444 34 4788999999999999999987432 11111 110011235799999
Q ss_pred eCCC
Q 023723 81 RSPS 84 (278)
Q Consensus 81 ~g~P 84 (278)
.-.+
T Consensus 182 ~D~~ 185 (336)
T PLN02823 182 GDLA 185 (336)
T ss_pred ecCC
Confidence 8753
No 198
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=56.36 E-value=24 Score=31.16 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=57.2
Q ss_pred CCeEEeeecchhhHHHHH-HhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccccCCCEEEeCCC
Q 023723 12 AWRVLEFYSGIGGMRYSL-MKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl-~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~~~~Dll~~g~P 84 (278)
.-+|||+-||.|....-+ ...|. -..|.++|+++..++.-+.|.....+ ..+...+. .....+|+++...-
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~~v 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISNCV 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEcCc
Confidence 459999999998765433 33452 23689999999999888887533221 11111111 11236898886521
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCC--cEEEEE
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDP--VERFLE 120 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P--~~~i~E 120 (278)
. .. ..| ....+.++.+.++| ++++.+
T Consensus 156 ~------~~---~~d-~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 I------NL---SPD-KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred c------cC---CCC-HHHHHHHHHHHcCCCcEEEEEE
Confidence 1 11 111 23467778888999 455555
No 199
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=55.94 E-value=23 Score=30.68 Aligned_cols=40 Identities=23% Similarity=0.027 Sum_probs=32.5
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHH
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYE 53 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~ 53 (278)
..-+|+..-||-|=--+-|-..| + .|.++|+.+.|++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G--~-~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQG--H-DVVGVDLSPTAIEQAF 76 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTT--E-EEEEEES-HHHHHHHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCC--C-eEEEEecCHHHHHHHH
Confidence 34589999999988878888889 4 6789999999999973
No 200
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=52.77 E-value=52 Score=29.35 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=68.9
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCccc-ccc---c-cccccccCCCEEEeCCC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQA-KRK---P-LSFRCQLLNNQLLRSPS 84 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~-~~~---~-~~~~~~~~~Dll~~g~P 84 (278)
....+|+|.=.|.|.+++.|-++=-+.=.|+.+|+.++-.++-+.|+....+.+ +.. + .+.....++|.++.--|
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp 172 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLP 172 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCC
Confidence 345799999999999999988641112378999999999999999987654333 100 0 01111226777776655
Q ss_pred CCCCCcccccCCCCCCCCchHHHHhhhcCCcEEEEE-eCCCc-----cchhhccCc
Q 023723 85 PLLGNDDMTVITKHDQPDDSWDKLLESCDPVERFLE-FSNSG-----DQVNTETGF 134 (278)
Q Consensus 85 Cq~fS~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E-v~~~~-----~~~l~~~GY 134 (278)
|+ .....++-+.++|.-+++= ++... .+.|++.|+
T Consensus 173 --------------~P-W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 173 --------------DP-WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred --------------Ch-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 11 1233445556888755444 44332 667777777
No 201
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=51.38 E-value=28 Score=30.90 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=37.5
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~ 61 (278)
.-+|+|-=.|.|.+++.|-++--+-=.|+.+|+.++..+.-++||.....
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl 90 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL 90 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC
Confidence 46899999999999999987521123789999999999999999865443
No 202
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=50.43 E-value=20 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=39.2
Q ss_pred CCCCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 8 NDGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 8 ~~~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
.+...-.|+|-|+|.|-...+..++| ....++|+++.-++.-..-+..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 45567799999999999999999999 4667799999887776665543
No 203
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=49.40 E-value=72 Score=30.23 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=58.8
Q ss_pred eecchhhHHHH----HHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC-cccccc---ccccccccCCCEEEeCCCCCCCC
Q 023723 18 FYSGIGGMRYS----LMKADVSAQVVEAFDINDKANDVYELNFGHRP-YQAKRK---PLSFRCQLLNNQLLRSPSPLLGN 89 (278)
Q Consensus 18 LFsG~Gg~~~g----l~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~-~~~~~~---~~~~~~~~~~Dll~~g~PCq~fS 89 (278)
+.+|.|-+... |...| ..|..+|.+++.++.++..+++.. +..+.. .+......++|.++...+.
T Consensus 235 iIiG~G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~---- 307 (453)
T PRK09496 235 MIVGGGNIGYYLAKLLEKEG---YSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND---- 307 (453)
T ss_pred EEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC----
Confidence 34566655443 44456 366889999999999988775543 333311 2333456689999887773
Q ss_pred cccccCCCCCCCCchHHHHhhhcCCcEEEEEeCCCc-cchhhccC
Q 023723 90 DDMTVITKHDQPDDSWDKLLESCDPVERFLEFSNSG-DQVNTETG 133 (278)
Q Consensus 90 ~ag~~~g~~d~r~~l~~~~i~~~~P~~~i~Ev~~~~-~~~l~~~G 133 (278)
|..+.+....++...+..++.++.+.. .+.|+.+|
T Consensus 308 ---------~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g 343 (453)
T PRK09496 308 ---------DEANILSSLLAKRLGAKKVIALVNRPAYVDLVEGLG 343 (453)
T ss_pred ---------cHHHHHHHHHHHHhCCCeEEEEECCcchHHHHHhcC
Confidence 222333333456666777777743322 45555555
No 204
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=49.29 E-value=19 Score=30.80 Aligned_cols=101 Identities=17% Similarity=0.062 Sum_probs=61.0
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceE-EEEEcCCHHHHHHHHHHcCCCC-c-------cccccccccccccCCCEEEeCC
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQV-VEAFDINDKANDVYELNFGHRP-Y-------QAKRKPLSFRCQLLNNQLLRSP 83 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~-v~a~e~~~~a~~~y~~N~~~~~-~-------~~~~~~~~~~~~~~~Dll~~g~ 83 (278)
-+||||=+|-|-+-..|.+.|+ .- ..++|..+.|++. .+|..... . +.|+... .....++||++-=-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf--~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGF--QSKLTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKG 144 (227)
T ss_pred cceeeccCCchHHHHHHHHhcC--CCCccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecC
Confidence 3999999999999999999995 44 8899999999988 44543222 2 2222221 12235677776432
Q ss_pred CCCCCCcccccCCCCCCCCchHHHHhhh-cCCc-EEEEE
Q 023723 84 SPLLGNDDMTVITKHDQPDDSWDKLLES-CDPV-ERFLE 120 (278)
Q Consensus 84 PCq~fS~ag~~~g~~d~r~~l~~~~i~~-~~P~-~~i~E 120 (278)
---..|..+.. .+.|-.+|+..++. ++|. .|++-
T Consensus 145 T~DAisLs~d~---~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDG---PVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCC---cccceeeehhhHhhccCCCcEEEEE
Confidence 22333333321 13344677776664 6774 44443
No 205
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=49.15 E-value=43 Score=30.70 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=34.4
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
-.++|.=.|.||-+..+-.+--+ -.|+++|.|+.|.+.-+.+.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHH
Confidence 37999999999999988765112 36899999999998877654
No 206
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=48.54 E-value=72 Score=27.85 Aligned_cols=41 Identities=12% Similarity=-0.001 Sum_probs=35.0
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHH
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN 55 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N 55 (278)
.-+|+..-||-|--..-|-..| + .|.++|+++.|++...+.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G--~-~V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKG--V-KVIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCC--C-cEEEEecCHHHHHHHHHH
Confidence 4699999999998888898899 4 489999999999998663
No 207
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=47.97 E-value=1.8 Score=31.82 Aligned_cols=72 Identities=11% Similarity=-0.054 Sum_probs=36.8
Q ss_pred EeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc------cccccccccccc-cCCCEEEeCCCCCCC
Q 023723 16 LEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY------QAKRKPLSFRCQ-LLNNQLLRSPSPLLG 88 (278)
Q Consensus 16 ~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~------~~~~~~~~~~~~-~~~Dll~~g~PCq~f 88 (278)
||+=||.|.+...+.+.. +...+.++|+++.+++..++.+..... .-...+...... ..+|++++..-.+-+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 578899999988887773 246778999999988443333322111 000111111111 489999988665544
No 208
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=45.71 E-value=57 Score=29.56 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=35.5
Q ss_pred CCeEEeeecchhhHHH-HHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 12 AWRVLEFYSGIGGMRY-SLMKADVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~-gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
.+++||+=||-|++.+ +.+.-| ..|.++++++.-.+..++-....
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~ 118 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAAR 118 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHc
Confidence 5799999999999875 555557 37789999999888888765433
No 209
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=41.77 E-value=47 Score=29.52 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=32.3
Q ss_pred CCCCeEEeeecchhh----HHHHHHhcCCC----ceEEEEEcCCHHHHHHHHHH
Q 023723 10 GEAWRVLEFYSGIGG----MRYSLMKADVS----AQVVEAFDINDKANDVYELN 55 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg----~~~gl~~aG~~----~~~v~a~e~~~~a~~~y~~N 55 (278)
...++|+|+-||.|- +.+-+.+.+.. --.|.|+|+++.+.+.-+++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 346999999999996 34334433210 12689999999999877765
No 210
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=40.50 E-value=61 Score=29.07 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=34.7
Q ss_pred CCCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHH
Q 023723 9 DGEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL 54 (278)
Q Consensus 9 ~~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~ 54 (278)
..+..++|||=||.|+.+.-+... |+.|+|.|.++.=+.-++.
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSK 134 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHh
Confidence 345678999999999999988553 7999999999877655544
No 211
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=39.72 E-value=26 Score=31.21 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=30.4
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHc
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNF 56 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~ 56 (278)
+.+|-|+|.|...+.+.. ..++.+|+|+.-+..|+.--
T Consensus 28 ~yvEPF~Gggsv~l~~~~-----~~~~lND~n~~Li~~~~~i~ 65 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLNP-----KRYLLNDINEDLINLYKAIK 65 (266)
T ss_pred EEEEecCCcchhheeecC-----cEEEEecCCHHHHHHHHHHH
Confidence 799999999998886532 34777999999988887643
No 212
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=39.62 E-value=99 Score=27.70 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=31.5
Q ss_pred CCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCCC
Q 023723 12 AWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHRP 60 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~~ 60 (278)
..+|||+=||-||+..-+-+. |+ .|.++.+++.-.+..+.......
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~g 109 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAG 109 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCST
T ss_pred CCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcC
Confidence 469999999999998776665 84 57889999887777666554443
No 213
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=38.81 E-value=36 Score=30.09 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=30.1
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCH
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDIND 46 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~ 46 (278)
-+.-.+||+=|-.|||+.-+-+.| .+.|+|+|.-.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~ 112 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGY 112 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccC
Confidence 345689999999999999999999 68999999753
No 214
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=36.64 E-value=1e+02 Score=26.40 Aligned_cols=44 Identities=23% Similarity=0.161 Sum_probs=35.2
Q ss_pred EEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 15 VLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 15 v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
|+|..|-=|=+...|-..|. ...+.|+|+++...+.-+.|....
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKY 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence 56777777888999999997 789999999998887777776433
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=34.77 E-value=74 Score=27.98 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=34.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGH 58 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~ 58 (278)
++-+||-+=.|.||....+.+.. +.+.|.+||+|+..++..++-|+.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPE 122 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHH
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchh
Confidence 45678888888888877776654 257889999999999998887764
No 216
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=33.65 E-value=1.2e+02 Score=23.79 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=39.2
Q ss_pred cchhhHHH----HHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccccccccc--ccccCCCEEEeCCCCCCC
Q 023723 20 SGIGGMRY----SLMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAKRKPLSF--RCQLLNNQLLRSPSPLLG 88 (278)
Q Consensus 20 sG~Gg~~~----gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~~~~~~~--~~~~~~Dll~~g~PCq~f 88 (278)
=|+||... +|...| ++.|..+..+....+.....++...+.-. .++. ....++|+++...|....
T Consensus 18 iGaGg~ar~v~~~L~~~g--~~~i~i~nRt~~ra~~l~~~~~~~~~~~~--~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 18 IGAGGAARAVAAALAALG--AKEITIVNRTPERAEALAEEFGGVNIEAI--PLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp ESSSHHHHHHHHHHHHTT--SSEEEEEESSHHHHHHHHHHHTGCSEEEE--EGGGHCHHHHTESEEEE-SSTTST
T ss_pred ECCHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHcCcccccee--eHHHHHHHHhhCCeEEEecCCCCc
Confidence 36677654 456678 57777788888777777777744322111 1111 124579999999886544
No 217
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=33.55 E-value=45 Score=34.48 Aligned_cols=45 Identities=18% Similarity=0.213 Sum_probs=37.8
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcC
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFG 57 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~ 57 (278)
.+..+++|=|||.|.+-+=..+.|. -|.|+|.+|.|.-..++-+.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~---~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGL---EVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCc---eeEEEecccHHHHHHHHHHh
Confidence 3457899999999999888888884 67889999999999888764
No 218
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=32.54 E-value=29 Score=26.02 Aligned_cols=88 Identities=11% Similarity=0.036 Sum_probs=51.7
Q ss_pred eecchhhHHHH----HHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCcccc--ccccccccccCCCEEEeCCCCCCCCcc
Q 023723 18 FYSGIGGMRYS----LMKADVSAQVVEAFDINDKANDVYELNFGHRPYQAK--RKPLSFRCQLLNNQLLRSPSPLLGNDD 91 (278)
Q Consensus 18 LFsG~Gg~~~g----l~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~~~~--~~~~~~~~~~~~Dll~~g~PCq~fS~a 91 (278)
+.+|.|-+... |...+ ..|..+|.|+..++..+...-....+|- ...+......++|.++...+
T Consensus 2 vI~G~g~~~~~i~~~L~~~~---~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGG---IDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTT---SEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EEEcCCHHHHHHHHHHHhCC---CEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 35677766544 34433 4778899999999998876622222332 11233344567887777655
Q ss_pred cccCCCCCCCCchHHHHhhhcCC-cEEEEEe
Q 023723 92 MTVITKHDQPDDSWDKLLESCDP-VERFLEF 121 (278)
Q Consensus 92 g~~~g~~d~r~~l~~~~i~~~~P-~~~i~Ev 121 (278)
+|..+.+....++...| ..++..+
T Consensus 72 ------~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 ------DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp ------SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ------CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 35556566667776666 3444543
No 219
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.78 E-value=1.9e+02 Score=24.96 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY 61 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~ 61 (278)
...+||+.=+|+|=.+.-+.+.. ..|+++|+++.=++.-++|+....+
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~ 119 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY 119 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC
Confidence 35799999999999888887765 4899999999988888888754443
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=29.56 E-value=1.9e+02 Score=26.12 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=39.1
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~ 60 (278)
+||-+=-|.||...-+.+..- .+-+.+||||+.-++.-+.-+|...
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~ 124 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPS 124 (282)
T ss_pred eEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcc
Confidence 888888899998877766653 6899999999999999999888766
No 221
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=29.50 E-value=1.3e+02 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=43.8
Q ss_pred cccCCCCCCeEEeeecchhhHHHHHHhc-CCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 5 MCKNDGEAWRVLEFYSGIGGMRYSLMKA-DVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 5 ~~~~~~~~~~v~dLFsG~Gg~~~gl~~a-G~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
|++.-.++.-+||.=|-+|-+++.+... | ...|.++|||+.-++.-+.|.++.
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~F~--~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKDFG--PRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHhhc--cceeeEeeccHHHHHHHHHhcccc
Confidence 4556677889999999999999988654 5 467999999999999988887654
No 222
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=29.05 E-value=1.7e+02 Score=23.54 Aligned_cols=74 Identities=5% Similarity=0.050 Sum_probs=46.5
Q ss_pred eEEeeecchhhHHHHHHh--cCCCceEEEEEcCCHHHHHHHHHHcCCCCc-ccc------cccccc-ccccCCCEEEeCC
Q 023723 14 RVLEFYSGIGGMRYSLMK--ADVSAQVVEAFDINDKANDVYELNFGHRPY-QAK------RKPLSF-RCQLLNNQLLRSP 83 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~--aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~------~~~~~~-~~~~~~Dll~~g~ 83 (278)
||.=+=||.+|..++... .| +.|.-...+++..+..+.++.+..+ .+. ..+-+. .-..+.|+++-.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g---~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG---HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT---EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcC---CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 345566788888777554 45 6777899999999988888765442 221 111111 1235799999999
Q ss_pred CCCCCCc
Q 023723 84 SPLLGND 90 (278)
Q Consensus 84 PCq~fS~ 90 (278)
|+|.+..
T Consensus 78 Ps~~~~~ 84 (157)
T PF01210_consen 78 PSQAHRE 84 (157)
T ss_dssp -GGGHHH
T ss_pred cHHHHHH
Confidence 9988753
No 223
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.52 E-value=26 Score=34.21 Aligned_cols=50 Identities=28% Similarity=0.317 Sum_probs=40.1
Q ss_pred CCCCCCeEEeeecchhh--HHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 8 NDGEAWRVLEFYSGIGG--MRYSLMKADVSAQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 8 ~~~~~~~v~dLFsG~Gg--~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
.+.+.+++||-+|+.|- +..+-|..| ..-|.|+|.++.|+++-+.|-...
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~--v~~v~AnD~~~~aV~~i~~Nv~~N 157 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPG--VRQVVANDLNENAVTSIQRNVELN 157 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcc--hhhhcccCCCHHHHHHHHhhhhhc
Confidence 34567899999998886 456777778 478899999999999999986544
No 224
>PF03078 ATHILA: ATHILA ORF-1 family; InterPro: IPR004312 ATHILA is a group of Arabidopsis thaliana retrotransposons [] belonging to the Ty3/gypsy family of the long terminal repeat (LTR) class of eukaryotic retrotransposons[, ]. The central region of ATHILA retrotransposons contains two or three open reading frames (ORFs). This family represents the ORF1 product. The function of ORF1 is unknown.
Probab=27.69 E-value=64 Score=31.33 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=31.3
Q ss_pred cccccCHHHHHHhCCCCCCcccCCCC---CHHHHHHHcCCccCHHH
Q 023723 223 HLRYFTPREVANLHSFPGDFQFPHHL---SLRQRYALLGNSLSIAV 265 (278)
Q Consensus 223 ~~R~lT~rE~~rLqgFPd~~~~~~~~---s~~~~~~~iGNaVp~~v 265 (278)
..=.||..+..++.|||.+....... -....|..||+++|-..
T Consensus 139 ~~y~lsi~~L~~i~GF~~~~~i~~~~~~~el~~~W~~ig~~~p~~~ 184 (458)
T PF03078_consen 139 VEYSLSIKHLERIFGFPSGDEIKPDFDPEELNDFWATIGGGKPFNS 184 (458)
T ss_pred eeeeeeHHHHHHHhCCCCccccCCCCCchHHHHHHHHhcCCCcccc
Confidence 34469999999999999986653322 24678899999965443
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.02 E-value=80 Score=27.24 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=27.8
Q ss_pred CCeEEeeecchhhHHH-HHHhcCCCceEEEEEcCCHHH
Q 023723 12 AWRVLEFYSGIGGMRY-SLMKADVSAQVVEAFDINDKA 48 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~-gl~~aG~~~~~v~a~e~~~~a 48 (278)
..+|+||.|-.||.+. +.+.+|-. .-|.|+|+.|-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~-~~ivavDi~p~~ 82 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAG-GKIVAVDILPMK 82 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCC-CcEEEEECcccc
Confidence 5799999999999997 55556521 228999999875
No 226
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=26.66 E-value=1.4e+02 Score=25.56 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=26.5
Q ss_pred CCeEEeeecchhhHHH-HHHhcCCCceEEEEEcCCHHHHHHHH
Q 023723 12 AWRVLEFYSGIGGMRY-SLMKADVSAQVVEAFDINDKANDVYE 53 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~-gl~~aG~~~~~v~a~e~~~~a~~~y~ 53 (278)
.-.++||=||+|-.-+ +....+ ++..+++|+.+...+.-+
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~--~~~~~GIEi~~~~~~~a~ 83 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTG--CKKSVGIEILPELHDLAE 83 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcC--CcEEEEEEechHHHHHHH
Confidence 3589999999999754 344556 688899999998765443
No 227
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=26.35 E-value=29 Score=32.50 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=43.3
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHH-------HHHHHcCCCC----cccc----ccccccccccCCCE
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKAND-------VYELNFGHRP----YQAK----RKPLSFRCQLLNNQ 78 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~-------~y~~N~~~~~----~~~~----~~~~~~~~~~~~Dl 78 (278)
-|.|=|.|.||+=+..-.-| -.|.+.|||-.-+. .-++||.... +-|. ...........+|-
T Consensus 211 ivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDa 287 (421)
T KOG2671|consen 211 IVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDA 287 (421)
T ss_pred EEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceeeE
Confidence 58899999999988777777 47788999865444 4566775332 1111 00111112346788
Q ss_pred EEeCCCC
Q 023723 79 LLRSPSP 85 (278)
Q Consensus 79 l~~g~PC 85 (278)
|++-||-
T Consensus 288 IvcDPPY 294 (421)
T KOG2671|consen 288 IVCDPPY 294 (421)
T ss_pred EEeCCCc
Confidence 8888873
No 228
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=24.78 E-value=1.5e+02 Score=26.69 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCeEEeeecchhhHHHHHHhcCC-----CceEEEEEcCCHHHHHHHHHHcCCCCccc---------cccccccccccCC
Q 023723 11 EAWRVLEFYSGIGGMRYSLMKADV-----SAQVVEAFDINDKANDVYELNFGHRPYQA---------KRKPLSFRCQLLN 76 (278)
Q Consensus 11 ~~~~v~dLFsG~Gg~~~gl~~aG~-----~~~~v~a~e~~~~a~~~y~~N~~~~~~~~---------~~~~~~~~~~~~~ 76 (278)
..+++||+.+|.|-...++.+.-- .-..|..+||+++=.++=+.--....+.+ +...+. .+...+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCcc
Confidence 348999999999999998876421 11578899999987766555442222222 211121 222356
Q ss_pred CEEEeCCCCCCCCcccccCCCCCCCCchHHHHhhhcCC--cEEEEEeC
Q 023723 77 NQLLRSPSPLLGNDDMTVITKHDQPDDSWDKLLESCDP--VERFLEFS 122 (278)
Q Consensus 77 Dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~i~~~~P--~~~i~Ev~ 122 (278)
|+.+.++- .+. ..| .-....+..|.+|| +++++||.
T Consensus 179 D~yTiafG--------IRN-~th-~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 179 DAYTIAFG--------IRN-VTH-IQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred eeEEEecc--------eec-CCC-HHHHHHHHHHhcCCCcEEEEEEcc
Confidence 77665542 232 222 22356677788999 78899944
No 229
>PRK10904 DNA adenine methylase; Provisional
Probab=24.35 E-value=51 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=29.9
Q ss_pred CeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHH
Q 023723 13 WRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELN 55 (278)
Q Consensus 13 ~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N 55 (278)
-+.+|-|+|.|++.+.+.. +.++.+|+|+.-+..|+.-
T Consensus 29 ~~yvEPF~GggaV~l~~~~-----~~~ilND~n~~Lin~y~~i 66 (271)
T PRK10904 29 ECLIEPFVGAGSVFLNTDF-----SRYILADINSDLISLYNIV 66 (271)
T ss_pred CcEEeccCCcceeeEecCC-----CeEEEEeCCHHHHHHHHHH
Confidence 3689999999998886522 3467799999988888753
No 230
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=24.04 E-value=66 Score=28.62 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=35.0
Q ss_pred eEEeeecchhhHHHHHHhcCCC-ceEEEEEcCCHHHHHHHHHHcCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVS-AQVVEAFDINDKANDVYELNFGHR 59 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~-~~~v~a~e~~~~a~~~y~~N~~~~ 59 (278)
+++++=||+|-...=+.+-.-+ -=.|+|||..+.|++.+++|-...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc
Confidence 7899999999987766543211 026899999999999999986433
No 231
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=22.58 E-value=1.1e+02 Score=27.21 Aligned_cols=44 Identities=14% Similarity=0.030 Sum_probs=35.5
Q ss_pred eEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCC
Q 023723 14 RVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRP 60 (278)
Q Consensus 14 ~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~ 60 (278)
.++|+=||.|-...++... ++.|.|+|+++.=.+..++-.|.+-
T Consensus 36 ~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~~~~y 79 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHPPVTY 79 (261)
T ss_pred eEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCCCccc
Confidence 7899999999666666544 7999999999999998887666554
No 232
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=22.23 E-value=1.9e+02 Score=25.56 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=66.4
Q ss_pred CCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHHHcCCCCc-cccccccccccccCCCEEEeCCCCCCCCc
Q 023723 12 AWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYELNFGHRPY-QAKRKPLSFRCQLLNNQLLRSPSPLLGND 90 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~N~~~~~~-~~~~~~~~~~~~~~~Dll~~g~PCq~fS~ 90 (278)
.-+|+||=||.|-.+.=|.+- .+--.|.++|-+++-++.-+..-|+..+ ..|..+.. ...+.|+|.+ .
T Consensus 31 ~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~--p~~~~dllfa--------N 99 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK--PEQPTDLLFA--------N 99 (257)
T ss_pred cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC--CCCccchhhh--------h
Confidence 458999999999988666543 2246889999999988888888888774 34433222 2345676643 2
Q ss_pred ccccCCCCCCCCchHHHHhhhcCCcEEEEE-eC
Q 023723 91 DMTVITKHDQPDDSWDKLLESCDPVERFLE-FS 122 (278)
Q Consensus 91 ag~~~g~~d~r~~l~~~~i~~~~P~~~i~E-v~ 122 (278)
|--+ .=.+...||.+++..+.|.-++.= ++
T Consensus 100 Avlq--WlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 100 AVLQ--WLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhhh--hccccHHHHHHHHHhhCCCceEEEECC
Confidence 3222 223445789999999999877665 54
No 233
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=21.58 E-value=83 Score=23.00 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=30.6
Q ss_pred HHhCCCCCC-cccCCCCCHHHHHHHcCCccCHHHHHHHHHHHHh
Q 023723 233 ANLHSFPGD-FQFPHHLSLRQRYALLGNSLSIAVVAPLLQYLFA 275 (278)
Q Consensus 233 ~rLqgFPd~-~~~~~~~s~~~~~~~iGNaVp~~v~~~i~~~l~~ 275 (278)
.++.+-|+. |.+-..+...+.-+..||++.+++...|++.|..
T Consensus 15 ~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~ 58 (94)
T PF13877_consen 15 RRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNE 58 (94)
T ss_pred HHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 344444433 4444445677888999999999999999988765
No 234
>PTZ00357 methyltransferase; Provisional
Probab=20.58 E-value=3.8e+02 Score=27.94 Aligned_cols=42 Identities=14% Similarity=0.009 Sum_probs=26.5
Q ss_pred CCeEEeeecchhhHH----HHHHhcCCCceEEEEEcCCHHH-HHHHHH
Q 023723 12 AWRVLEFYSGIGGMR----YSLMKADVSAQVVEAFDINDKA-NDVYEL 54 (278)
Q Consensus 12 ~~~v~dLFsG~Gg~~----~gl~~aG~~~~~v~a~e~~~~a-~~~y~~ 54 (278)
.+.|+-+=||=|-+= .+++.+|+++ .|+|+|.|+.| .-++..
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~gvkV-rIyAVEKNPpAA~~tllr 747 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALGVRL-RIFAIEKNLPAAAFTRMR 747 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcCCcE-EEEEEecCcchHHHHHHH
Confidence 355666666667652 3456678754 57999999654 444443
No 235
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=20.21 E-value=2.5e+02 Score=27.45 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCCCeEEeeecchhhHHHHHHhcCCCceEEEEEcCCHHHHHHHHH
Q 023723 10 GEAWRVLEFYSGIGGMRYSLMKADVSAQVVEAFDINDKANDVYEL 54 (278)
Q Consensus 10 ~~~~~v~dLFsG~Gg~~~gl~~aG~~~~~v~a~e~~~~a~~~y~~ 54 (278)
..+.-|||+=+|.|-+|+=..+|| .+-|.|+|.-+--.+.-++
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARK 107 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHH
Confidence 346789999999999999999999 5789999987654444443
Done!