Query 023724
Match_columns 278
No_of_seqs 175 out of 720
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 2.2E-16 7.7E-21 117.6 4.4 42 134-176 3-44 (63)
2 2vut_I AREA, nitrogen regulato 99.6 6.2E-16 2.1E-20 107.5 2.6 37 139-176 2-38 (43)
3 1gnf_A Transcription factor GA 99.6 1.4E-15 4.7E-20 107.1 3.4 38 137-175 3-40 (46)
4 4gat_A Nitrogen regulatory pro 99.5 1.8E-15 6.3E-20 113.5 3.2 40 136-176 7-46 (66)
5 2kae_A GATA-type transcription 99.5 2.4E-15 8.1E-20 114.4 2.0 43 135-177 5-47 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 6.3E-13 2.2E-17 108.3 3.2 42 135-177 56-97 (115)
7 4hc9_A Trans-acting T-cell-spe 99.2 6.6E-12 2.3E-16 102.3 2.9 37 137-174 4-40 (115)
8 1dl6_A Transcription factor II 67.9 2.2 7.6E-05 30.4 1.6 32 136-170 9-40 (58)
9 3cw2_K Translation initiation 63.9 3 0.0001 34.8 1.9 30 139-169 104-133 (139)
10 2d74_B Translation initiation 60.7 3 0.0001 35.2 1.4 29 139-168 105-133 (148)
11 3k7a_M Transcription initiatio 56.4 3.8 0.00013 37.6 1.4 32 138-170 21-52 (345)
12 1nee_A EIF-2-beta, probable tr 54.5 3.1 0.00011 34.6 0.5 29 139-168 103-131 (138)
13 1k81_A EIF-2-beta, probable tr 53.9 1.3 4.5E-05 29.0 -1.5 28 140-168 2-29 (36)
14 2b0o_E UPLC1; arfgap, structur 52.7 5.8 0.0002 34.6 1.9 34 137-172 41-74 (301)
15 2iqj_A Stromal membrane-associ 50.6 7.9 0.00027 31.9 2.3 35 137-173 26-60 (134)
16 2crr_A Stromal membrane-associ 49.2 9.8 0.00033 31.6 2.7 34 138-173 29-62 (141)
17 2owa_A Arfgap-like finger doma 48.5 7.5 0.00026 32.3 1.9 34 138-173 36-69 (138)
18 1pft_A TFIIB, PFTFIIBN; N-term 47.7 3.6 0.00012 27.8 -0.2 30 138-170 5-34 (50)
19 2olm_A Nucleoporin-like protei 46.2 7.5 0.00026 32.2 1.5 33 138-172 25-57 (140)
20 2p57_A GTPase-activating prote 42.7 10 0.00034 31.9 1.7 35 137-173 36-70 (144)
21 3dwd_A ADP-ribosylation factor 42.7 15 0.00053 31.0 2.9 35 137-173 37-71 (147)
22 2crw_A ARF GAP 3, ADP-ribosyla 40.5 15 0.00052 30.9 2.6 35 137-173 28-62 (149)
23 3cng_A Nudix hydrolase; struct 40.0 7.7 0.00026 31.4 0.7 31 137-167 2-32 (189)
24 2g2k_A EIF-5, eukaryotic trans 35.9 5.4 0.00019 34.4 -0.9 47 139-185 97-146 (170)
25 2yrk_A Zinc finger homeobox pr 34.1 5.3 0.00018 29.1 -1.1 18 154-171 7-24 (55)
26 4bbr_M Transcription initiatio 31.7 7.8 0.00027 35.8 -0.7 31 138-169 21-51 (345)
27 3sub_A ADP-ribosylation factor 31.2 23 0.00078 30.5 2.2 33 138-172 22-54 (163)
28 3lju_X ARF-GAP with dual PH do 30.9 16 0.00056 33.9 1.4 32 138-171 34-65 (386)
29 2yrc_A Protein transport prote 30.0 15 0.00052 26.4 0.7 35 134-168 5-41 (59)
30 2e9h_A EIF-5, eukaryotic trans 29.8 8.8 0.0003 32.7 -0.6 31 139-169 104-135 (157)
31 3k1f_M Transcription initiatio 28.2 12 0.00039 33.3 -0.2 33 137-170 20-52 (197)
32 2ds5_A CLPX, ATP-dependent CLP 25.9 35 0.0012 23.9 2.0 31 138-170 11-43 (51)
33 3o47_A ADP-ribosylation factor 25.3 33 0.0011 30.5 2.2 34 137-172 36-69 (329)
34 1pqv_S STP-alpha, transcriptio 24.8 13 0.00043 34.1 -0.6 34 138-171 268-307 (309)
35 1tjl_A DNAK suppressor protein 21.6 47 0.0016 27.6 2.3 39 136-175 109-147 (151)
36 3jue_A Arfgap with coiled-coil 20.2 48 0.0017 30.2 2.3 34 137-172 44-77 (368)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.62 E-value=2.2e-16 Score=117.61 Aligned_cols=42 Identities=36% Similarity=0.783 Sum_probs=37.6
Q ss_pred CCCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724 134 SNNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 176 (278)
Q Consensus 134 s~~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~ 176 (278)
+......|++|+|++||+||+||+|+ +|||||||+|++.+..
T Consensus 3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~ 44 (63)
T 3dfx_A 3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN 44 (63)
T ss_dssp CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC
T ss_pred CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC
Confidence 45678899999999999999999997 9999999999887643
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.57 E-value=6.2e-16 Score=107.46 Aligned_cols=37 Identities=46% Similarity=0.997 Sum_probs=33.6
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 176 (278)
Q Consensus 139 ~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~ 176 (278)
+.|++|++++||+||+||+|+ +|||||||||++.+..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999999999999999996 9999999999876643
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.56 E-value=1.4e-15 Score=107.12 Aligned_cols=38 Identities=42% Similarity=0.957 Sum_probs=34.4
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhh
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 175 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k 175 (278)
..+.|++|++++||+||+||+|+ +|||||||||++...
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 46889999999999999999996 999999999987653
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.54 E-value=1.8e-15 Score=113.45 Aligned_cols=40 Identities=45% Similarity=0.930 Sum_probs=36.3
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhh
Q 023724 136 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKA 176 (278)
Q Consensus 136 ~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~ 176 (278)
+..+.|++|+|++||+||+||+|. +|||||||||++....
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC
Confidence 568999999999999999999996 9999999999876643
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.51 E-value=2.4e-15 Score=114.38 Aligned_cols=43 Identities=40% Similarity=0.560 Sum_probs=33.7
Q ss_pred CCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhhh
Q 023724 135 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM 177 (278)
Q Consensus 135 ~~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~~ 177 (278)
......|+||+|++||+||+|+.+..+|||||||||++....+
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~R 47 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTR 47 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSCC
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCCC
Confidence 4568999999999999999954444489999999998876543
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.31 E-value=6.3e-13 Score=108.31 Aligned_cols=42 Identities=36% Similarity=0.771 Sum_probs=37.4
Q ss_pred CCCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhhhh
Q 023724 135 NNTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARKAM 177 (278)
Q Consensus 135 ~~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k~~ 177 (278)
......|++|+|++||+||+||+| .+|||||||||++....+
T Consensus 56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~r 97 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINR 97 (115)
T ss_dssp CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCC
T ss_pred ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCC
Confidence 345789999999999999999999 899999999998876543
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.18 E-value=6.6e-12 Score=102.31 Aligned_cols=37 Identities=43% Similarity=0.952 Sum_probs=32.4
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhh
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 174 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~ 174 (278)
..+.|+||++++||+||+||+| .+|||||||||+...
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG 40 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence 5789999999999999999999 799999999986544
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=67.93 E-value=2.2 Score=30.37 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 023724 136 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 170 (278)
Q Consensus 136 ~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~y 170 (278)
.....|.+|+.+. +-.....| ..+|..||+-+
T Consensus 9 l~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAI--LVEDYRAG-DMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSC--CEECSSSC-CEECTTTCCEE
T ss_pred cccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEE
Confidence 3456899998754 44455567 68999999865
No 9
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=63.87 E-value=3 Score=34.79 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=21.3
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHHH
Q 023724 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGIR 169 (278)
Q Consensus 139 ~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~ 169 (278)
-.|..|+..+|-+-+.+..= -.-|+|||-.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCC
Confidence 68999999999999865333 4689999964
No 10
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=60.75 E-value=3 Score=35.21 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=23.4
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHH
Q 023724 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 168 (278)
Q Consensus 139 ~~CsnC~tt~TP~WRrGP~G~~~LCNACGL 168 (278)
-.|..|+..+|-+-+.+..= -.-|+|||-
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCC
Confidence 57999999999999865332 468999984
No 11
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=56.35 E-value=3.8 Score=37.60 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=19.2
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 170 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~y 170 (278)
...|.+|+.+.+-.-.....| .++|..||+-.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEc
Confidence 456888877643233344456 57888887743
No 12
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=54.48 E-value=3.1 Score=34.62 Aligned_cols=29 Identities=38% Similarity=0.784 Sum_probs=23.1
Q ss_pred cccccCCCCCCCccccCCCCCcccchHHHH
Q 023724 139 RICSDCNTTTTPLWRSGPRGPKSLCNACGI 168 (278)
Q Consensus 139 ~~CsnC~tt~TP~WRrGP~G~~~LCNACGL 168 (278)
-.|..|+..+|-+-+.+..= -.-|+|||-
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCC
Confidence 57999999999999865332 458999983
No 13
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=53.88 E-value=1.3 Score=29.02 Aligned_cols=28 Identities=32% Similarity=0.725 Sum_probs=20.9
Q ss_pred ccccCCCCCCCccccCCCCCcccchHHHH
Q 023724 140 ICSDCNTTTTPLWRSGPRGPKSLCNACGI 168 (278)
Q Consensus 140 ~CsnC~tt~TP~WRrGP~G~~~LCNACGL 168 (278)
.|..|+..+|-+=+.+..- -.-|+|||-
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~ 29 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGA 29 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCC
Confidence 5999999999998854222 245999983
No 14
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=52.66 E-value=5.8 Score=34.56 Aligned_cols=34 Identities=29% Similarity=0.616 Sum_probs=27.4
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK 172 (278)
.-..|.+|+... |.|-.-.-| ..+|-.|--.-|.
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~ 74 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRE 74 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHh
Confidence 357899999964 999999999 7899999544443
No 15
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=50.65 E-value=7.9 Score=31.87 Aligned_cols=35 Identities=29% Similarity=0.657 Sum_probs=28.7
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 173 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~ 173 (278)
.-..|.+|+.. -|.|-.-..| ..||-.|.-..|..
T Consensus 26 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~l 60 (134)
T 2iqj_A 26 DNKFCADCQSK-GPRWASWNIG-VFICIRCAGIHRNL 60 (134)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCcCCcCcCC-CCCeEEecCC-EEEhHhhhHHHhcC
Confidence 35789999987 4999999999 78999997666554
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.18 E-value=9.8 Score=31.55 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=28.1
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 173 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~ 173 (278)
-..|.+|+.. -|.|-.-..| ..||-.|.-..|..
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHH
T ss_pred CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcC
Confidence 4689999986 5999999999 78999997666544
No 17
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=48.50 E-value=7.5 Score=32.28 Aligned_cols=34 Identities=32% Similarity=0.667 Sum_probs=28.3
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 173 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~ 173 (278)
-..|.+|+... |.|-.-..| ..||-.|.-..|..
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~L 69 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKM 69 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTT
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCC
Confidence 47899999864 999999999 78999997666543
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=47.66 E-value=3.6 Score=27.76 Aligned_cols=30 Identities=27% Similarity=0.728 Sum_probs=19.4
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 170 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~y 170 (278)
...|.+|+.+ ++-.....| ..+|..||+-|
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcc
Confidence 4568888763 443333445 67888888765
No 19
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=46.23 E-value=7.5 Score=32.23 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=27.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK 172 (278)
-..|.+|+.. -|.|-.-..| ..||-.|.-..|.
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 4789999985 7999999999 7899999665543
No 20
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=42.70 E-value=10 Score=31.95 Aligned_cols=35 Identities=34% Similarity=0.653 Sum_probs=28.6
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 173 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~ 173 (278)
.-+.|.+|+.. -|.|-.-..| ..||-.|.-..|..
T Consensus 36 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 70 (144)
T 2p57_A 36 TNKACFDCGAK-NPSWASITYG-VFLCIDCSGVHRSL 70 (144)
T ss_dssp GGGBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHHH
T ss_pred CCCcCCCCcCC-CCCeEEeccC-EEEhhhchHHHcCC
Confidence 35789999986 5999999999 78999997666543
No 21
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=42.66 E-value=15 Score=30.97 Aligned_cols=35 Identities=29% Similarity=0.637 Sum_probs=28.8
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 173 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~ 173 (278)
.-+.|.+|+... |.|-.-..| ..||-.|.-..|..
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~L 71 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGL 71 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHH
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcC
Confidence 357899999874 999999999 78999997666543
No 22
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.51 E-value=15 Score=30.86 Aligned_cols=35 Identities=34% Similarity=0.707 Sum_probs=28.6
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHHh
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKA 173 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~ 173 (278)
.-..|.+|+.. -|.|-.-..| ..||-.|.-..|..
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~L 62 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSL 62 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHH
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccC
Confidence 35789999975 6999999999 78999997666544
No 23
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=40.04 E-value=7.7 Score=31.42 Aligned_cols=31 Identities=23% Similarity=0.597 Sum_probs=25.9
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHH
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACG 167 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACG 167 (278)
..+.|..|++.-+.....|..+....|-.||
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred CcccCchhCCccccccccCCCCcceECCCCC
Confidence 3578999999998877778777778999999
No 24
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=35.89 E-value=5.4 Score=34.43 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=30.4
Q ss_pred cccccCCCCCCCccccCCCC-CcccchHHHHHHHH--hhhhhHHHHhcCC
Q 023724 139 RICSDCNTTTTPLWRSGPRG-PKSLCNACGIRQRK--ARKAMQAAAESGT 185 (278)
Q Consensus 139 ~~CsnC~tt~TP~WRrGP~G-~~~LCNACGL~yrK--~~k~~~~~~~ng~ 185 (278)
-.|..|+..+|-+-+....+ --.-|+|||-..-- ..++..+..+|.+
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~~~~kl~t~i~knpp 146 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPP 146 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSCSSSSHHHHHHTSCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccccccccceeeeeeecCC
Confidence 57999999999999842222 13579999975422 2344445555555
No 25
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=34.08 E-value=5.3 Score=29.06 Aligned_cols=18 Identities=33% Similarity=0.872 Sum_probs=15.3
Q ss_pred cCCCCCcccchHHHHHHH
Q 023724 154 SGPRGPKSLCNACGIRQR 171 (278)
Q Consensus 154 rGP~G~~~LCNACGL~yr 171 (278)
.+|+||++-|.-||+.|-
T Consensus 7 ~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCccccccCcccc
Confidence 578898899999999874
No 26
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=31.68 E-value=7.8 Score=35.83 Aligned_cols=31 Identities=23% Similarity=0.624 Sum_probs=17.9
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHH
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIR 169 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~ 169 (278)
...|.+|+...+-+--+-..| .++|..||+-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlV 51 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLV 51 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGT-EEEETTTCBE
T ss_pred CCcCCCCCCCCCceeEECCCC-cEEeCCCCCC
Confidence 446777776433343344456 5777777763
No 27
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=31.15 E-value=23 Score=30.45 Aligned_cols=33 Identities=33% Similarity=0.633 Sum_probs=27.3
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK 172 (278)
-..|.+|+.. -|.|-.-..| ..||-.|.-..|.
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 4689999986 6999999999 7899999655444
No 28
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=30.89 E-value=16 Score=33.91 Aligned_cols=32 Identities=31% Similarity=0.661 Sum_probs=26.5
Q ss_pred CcccccCCCCCCCccccCCCCCcccchHHHHHHH
Q 023724 138 VRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQR 171 (278)
Q Consensus 138 ~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yr 171 (278)
-..|.+|++. -|.|-.-..| ..||-.|.-..|
T Consensus 34 N~~C~dC~~~-~p~w~s~~~g-~~~C~~Csg~hr 65 (386)
T 3lju_X 34 NARCADCGAP-DPDWASYTLG-VFICLSCSGIHR 65 (386)
T ss_dssp GSBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred CCcCccCCCC-CCCeEEeccc-EEEhhhhchHhh
Confidence 3579999986 7999999999 789999964443
No 29
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=30.03 E-value=15 Score=26.35 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=30.1
Q ss_pred CCCCCccccc--CCCCCCCccccCCCCCcccchHHHH
Q 023724 134 SNNTVRICSD--CNTTTTPLWRSGPRGPKSLCNACGI 168 (278)
Q Consensus 134 s~~~~~~Csn--C~tt~TP~WRrGP~G~~~LCNACGL 168 (278)
+.....+|.. |++-.-|-++=...|..-.||-|+.
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence 4567899998 9999999998888787789999974
No 30
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.78 E-value=8.8 Score=32.69 Aligned_cols=31 Identities=29% Similarity=0.684 Sum_probs=22.8
Q ss_pred cccccCCCCCCCccccCCCC-CcccchHHHHH
Q 023724 139 RICSDCNTTTTPLWRSGPRG-PKSLCNACGIR 169 (278)
Q Consensus 139 ~~CsnC~tt~TP~WRrGP~G-~~~LCNACGL~ 169 (278)
-.|..|+..+|-+-+....+ --.-|+|||-.
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 67999999999998732222 23579999864
No 31
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=28.22 E-value=12 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.564 Sum_probs=23.8
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHH
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQ 170 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~y 170 (278)
....|..|+...+-+-..-..| .++|..||+-+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erG-E~VCsdCGLVL 52 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEG-DVVCALCGLVL 52 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGT-EEEETTTCBBC
T ss_pred cCeECcCCCCcCCeEEEeCCCC-EEEEcCCCCCc
Confidence 4568999998654444444556 68999999865
No 32
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=25.90 E-value=35 Score=23.92 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=21.6
Q ss_pred CcccccCCCCCCCc--cccCCCCCcccchHHHHHH
Q 023724 138 VRICSDCNTTTTPL--WRSGPRGPKSLCNACGIRQ 170 (278)
Q Consensus 138 ~~~CsnC~tt~TP~--WRrGP~G~~~LCNACGL~y 170 (278)
...|+-|+-++... .=.|| | .++|+.|--.-
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~~ 43 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 43 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHHHH
Confidence 46899999877543 33455 4 58999996544
No 33
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=25.32 E-value=33 Score=30.52 Aligned_cols=34 Identities=29% Similarity=0.668 Sum_probs=27.6
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK 172 (278)
.-..|.+|+.. -|.|-.-..| ..+|-.|.-..|.
T Consensus 36 ~n~~c~dc~~~-~~~~~~~~~~-~~~c~~c~~~hr~ 69 (329)
T 3o47_A 36 ENNVCFECGAF-NPQWVSVTYG-IWICLECSGRHRG 69 (329)
T ss_dssp TTTBCTTTCCB-SCCEEEGGGT-EEECHHHHHHHHH
T ss_pred CCCcCCCCCCC-CCCeEEecCC-EEEChhhhhhhcc
Confidence 35689999985 6899999999 7899999655554
No 34
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=24.76 E-value=13 Score=34.10 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=25.3
Q ss_pred CcccccCCCCCCCcc----ccCCCCCc--ccchHHHHHHH
Q 023724 138 VRICSDCNTTTTPLW----RSGPRGPK--SLCNACGIRQR 171 (278)
Q Consensus 138 ~~~CsnC~tt~TP~W----RrGP~G~~--~LCNACGL~yr 171 (278)
...|..|+-...-.| |+.++|.. +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998876555 66766632 58999998874
No 35
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=21.62 E-value=47 Score=27.64 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=30.2
Q ss_pred CCCcccccCCCCCCCccccCCCCCcccchHHHHHHHHhhh
Q 023724 136 NTVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKARK 175 (278)
Q Consensus 136 ~~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK~~k 175 (278)
+.-..|..||...-...+..-.+ .++|-.|--.+.+..+
T Consensus 109 g~yg~C~~Cg~~Ip~~Rl~a~P~-a~~Ci~Cq~~~E~~~k 147 (151)
T 1tjl_A 109 EDFGYCESCGVEIGIRRLEARPT-ADLCIDCKTLAEIREK 147 (151)
T ss_dssp TCCSBCSSSSCBCCHHHHHHCTT-CCSCHHHHHHHHHHHH
T ss_pred CCCceeCCCCCcchHHHHhcCCC-cchhHHHHHHHHHHHh
Confidence 45679999999988777666556 5899999887765544
No 36
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=20.21 E-value=48 Score=30.17 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=27.4
Q ss_pred CCcccccCCCCCCCccccCCCCCcccchHHHHHHHH
Q 023724 137 TVRICSDCNTTTTPLWRSGPRGPKSLCNACGIRQRK 172 (278)
Q Consensus 137 ~~~~CsnC~tt~TP~WRrGP~G~~~LCNACGL~yrK 172 (278)
.-..|.+|+.. -|.|-.-..| ..||-.|.=..|.
T Consensus 44 ~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr~ 77 (368)
T 3jue_A 44 GNAQCCDCREP-APEWASINLG-VTLCIQCSGIHRS 77 (368)
T ss_dssp TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHhc
Confidence 35789999985 6999999999 7899999544443
Done!