Query 023725
Match_columns 278
No_of_seqs 226 out of 1446
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.7 3.6E-18 1.2E-22 129.6 8.8 63 35-97 14-76 (80)
2 2da3_A Alpha-fetoprotein enhan 99.7 2.3E-18 7.8E-23 129.9 7.6 63 35-97 14-76 (80)
3 2dmu_A Homeobox protein goosec 99.7 6.8E-18 2.3E-22 124.7 8.0 62 36-97 5-66 (70)
4 2vi6_A Homeobox protein nanog; 99.7 3E-18 1E-22 123.8 5.9 60 37-96 2-61 (62)
5 2kt0_A Nanog, homeobox protein 99.7 6.5E-18 2.2E-22 128.8 7.9 63 35-97 19-81 (84)
6 1nk2_P Homeobox protein VND; h 99.7 5.9E-18 2E-22 127.5 7.5 65 37-101 8-72 (77)
7 2cra_A Homeobox protein HOX-B1 99.7 5E-18 1.7E-22 125.6 7.0 62 36-97 5-66 (70)
8 2h1k_A IPF-1, pancreatic and d 99.7 6.4E-18 2.2E-22 122.6 7.4 60 37-96 2-61 (63)
9 2e1o_A Homeobox protein PRH; D 99.7 9.7E-18 3.3E-22 124.0 8.0 61 37-97 6-66 (70)
10 2cue_A Paired box protein PAX6 99.7 1.2E-17 4.1E-22 126.7 8.7 64 36-99 5-68 (80)
11 2dmq_A LIM/homeobox protein LH 99.7 1.3E-17 4.5E-22 126.1 8.5 63 36-98 5-67 (80)
12 2hdd_A Protein (engrailed home 99.7 6.8E-18 2.3E-22 121.6 6.5 58 38-95 3-60 (61)
13 2da2_A Alpha-fetoprotein enhan 99.7 9.4E-18 3.2E-22 123.8 7.1 62 36-97 5-66 (70)
14 1ig7_A Homeotic protein MSX-1; 99.7 1.3E-17 4.3E-22 118.8 7.4 57 39-95 1-57 (58)
15 2dms_A Homeobox protein OTX2; 99.7 1.3E-17 4.5E-22 126.3 7.7 62 36-97 5-66 (80)
16 1wh5_A ZF-HD homeobox family p 99.7 1.1E-17 3.9E-22 127.5 7.0 60 36-95 15-78 (80)
17 1puf_A HOX-1.7, homeobox prote 99.7 2.3E-17 7.8E-22 124.3 8.6 62 37-98 12-73 (77)
18 2da1_A Alpha-fetoprotein enhan 99.7 1.1E-17 3.9E-22 123.4 6.7 62 36-97 5-66 (70)
19 2djn_A Homeobox protein DLX-5; 99.7 1E-17 3.5E-22 123.9 6.3 62 36-97 5-66 (70)
20 1fjl_A Paired protein; DNA-bin 99.7 2.1E-17 7.2E-22 125.4 8.1 62 36-97 16-77 (81)
21 1zq3_P PRD-4, homeotic bicoid 99.7 2.1E-17 7.2E-22 121.7 7.6 61 38-98 2-62 (68)
22 2l7z_A Homeobox protein HOX-A1 99.7 2.4E-17 8.1E-22 123.1 7.8 62 36-97 5-66 (73)
23 3rkq_A Homeobox protein NKX-2. 99.7 2E-17 6.7E-22 117.2 6.9 57 38-94 2-58 (58)
24 1bw5_A ISL-1HD, insulin gene e 99.7 1.1E-17 3.7E-22 122.3 5.6 60 38-97 3-62 (66)
25 2r5y_A Homeotic protein sex co 99.7 2.2E-17 7.5E-22 127.3 7.4 62 35-96 25-86 (88)
26 2ecc_A Homeobox and leucine zi 99.7 1.8E-17 6.3E-22 125.8 6.8 59 40-98 5-63 (76)
27 1ahd_P Antennapedia protein mu 99.7 1.8E-17 6.2E-22 122.2 6.5 60 38-97 2-61 (68)
28 1jgg_A Segmentation protein EV 99.7 2.4E-17 8.3E-22 118.3 7.0 58 39-96 2-59 (60)
29 1yz8_P Pituitary homeobox 2; D 99.7 1E-17 3.4E-22 123.3 5.0 61 37-97 2-62 (68)
30 3a01_A Homeodomain-containing 99.7 3E-17 1E-21 128.2 7.9 65 37-101 16-80 (93)
31 1uhs_A HOP, homeodomain only p 99.7 3.4E-17 1.2E-21 121.7 7.6 59 39-97 2-61 (72)
32 1wh7_A ZF-HD homeobox family p 99.7 1.9E-17 6.4E-22 126.5 6.3 60 35-95 14-78 (80)
33 1ftt_A TTF-1 HD, thyroid trans 99.7 3.3E-17 1.1E-21 120.7 7.2 60 38-97 2-61 (68)
34 1b8i_A Ultrabithorax, protein 99.7 2.2E-17 7.6E-22 125.7 6.4 61 37-97 19-79 (81)
35 2da5_A Zinc fingers and homeob 99.7 3.7E-17 1.3E-21 122.7 7.5 59 39-97 8-66 (75)
36 2da4_A Hypothetical protein DK 99.7 1.6E-17 5.6E-22 125.8 5.4 61 37-97 7-71 (80)
37 2m0c_A Homeobox protein arista 99.7 4.2E-17 1.4E-21 121.4 7.4 62 36-97 7-68 (75)
38 1akh_A Protein (mating-type pr 99.7 2.6E-17 8.8E-22 118.3 5.8 58 37-94 4-61 (61)
39 2hi3_A Homeodomain-only protei 99.7 5.5E-17 1.9E-21 121.0 7.6 59 39-97 3-62 (73)
40 2k40_A Homeobox expressed in E 99.7 4.3E-17 1.5E-21 119.4 6.7 60 39-98 2-61 (67)
41 3a03_A T-cell leukemia homeobo 99.7 6.2E-17 2.1E-21 114.9 6.7 54 43-96 2-55 (56)
42 1x2n_A Homeobox protein pknox1 99.7 9E-17 3.1E-21 119.6 7.7 62 37-98 6-70 (73)
43 3a02_A Homeobox protein arista 99.7 5.1E-17 1.7E-21 116.6 6.1 57 41-97 2-58 (60)
44 3nar_A ZHX1, zinc fingers and 99.7 7.5E-17 2.6E-21 126.4 7.4 63 37-99 24-86 (96)
45 2dn0_A Zinc fingers and homeob 99.7 5.9E-17 2E-21 121.7 6.5 60 38-97 8-67 (76)
46 1b72_A Protein (homeobox prote 99.7 8.7E-17 3E-21 126.2 6.9 62 36-97 32-93 (97)
47 1puf_B PRE-B-cell leukemia tra 99.7 9E-17 3.1E-21 119.6 6.5 62 39-100 2-66 (73)
48 2ecb_A Zinc fingers and homeob 99.7 8.7E-17 3E-21 125.4 6.7 58 40-97 13-70 (89)
49 2ly9_A Zinc fingers and homeob 99.7 1.2E-16 4.2E-21 119.0 6.8 60 38-97 6-65 (74)
50 1k61_A Mating-type protein alp 99.7 1.7E-16 5.7E-21 113.8 6.9 56 41-96 1-59 (60)
51 1b72_B Protein (PBX1); homeodo 99.6 2.4E-16 8.3E-21 120.8 7.7 62 39-100 2-66 (87)
52 2cqx_A LAG1 longevity assuranc 99.6 5.8E-17 2E-21 121.3 4.1 59 39-97 9-68 (72)
53 1du6_A PBX1, homeobox protein 99.6 1.1E-16 3.8E-21 116.1 5.2 58 38-95 3-63 (64)
54 2dmn_A Homeobox protein TGIF2L 99.6 3.2E-16 1.1E-20 120.0 7.6 64 36-99 5-71 (83)
55 2cuf_A FLJ21616 protein; homeo 99.6 3.7E-16 1.3E-20 122.2 7.8 63 36-98 5-82 (95)
56 1le8_B Mating-type protein alp 99.6 2E-16 6.8E-21 120.9 5.9 64 38-101 2-68 (83)
57 1mnm_C Protein (MAT alpha-2 tr 99.6 3.8E-16 1.3E-20 120.1 7.3 60 36-95 25-87 (87)
58 2dmp_A Zinc fingers and homeob 99.6 3.6E-16 1.2E-20 121.2 6.9 58 40-97 15-72 (89)
59 1au7_A Protein PIT-1, GHF-1; c 99.6 3.9E-16 1.3E-20 131.2 5.9 61 36-96 85-145 (146)
60 1e3o_C Octamer-binding transcr 99.6 5.7E-16 2E-20 131.8 6.2 62 35-96 98-159 (160)
61 3nau_A Zinc fingers and homeob 99.6 1.4E-15 4.7E-20 112.5 6.6 53 45-97 11-63 (66)
62 2l9r_A Homeobox protein NKX-3. 99.6 3.9E-16 1.3E-20 116.2 3.7 56 43-98 9-64 (69)
63 1x2m_A LAG1 longevity assuranc 99.6 5.6E-16 1.9E-20 114.0 4.3 50 47-96 9-59 (64)
64 3d1n_I POU domain, class 6, tr 99.6 1.5E-15 5E-20 128.0 7.5 60 36-95 91-150 (151)
65 2xsd_C POU domain, class 3, tr 99.6 7.8E-16 2.7E-20 131.8 5.6 63 35-97 96-158 (164)
66 1wi3_A DNA-binding protein SAT 99.6 2.4E-15 8.2E-20 111.9 6.9 58 37-94 6-64 (71)
67 2e19_A Transcription factor 8; 99.6 2.9E-15 9.8E-20 109.7 6.1 53 43-95 8-60 (64)
68 3l1p_A POU domain, class 5, tr 99.6 2.8E-15 9.6E-20 127.0 6.3 60 37-96 95-154 (155)
69 2da6_A Hepatocyte nuclear fact 99.6 8.2E-15 2.8E-19 117.0 8.5 61 37-97 5-86 (102)
70 1lfb_A Liver transcription fac 99.5 2.8E-15 9.5E-20 118.9 4.7 63 36-98 7-90 (99)
71 3k2a_A Homeobox protein MEIS2; 99.5 5.2E-15 1.8E-19 109.0 5.5 59 44-102 4-65 (67)
72 2d5v_A Hepatocyte nuclear fact 99.5 5.4E-15 1.8E-19 125.8 5.7 62 36-97 95-156 (164)
73 2da7_A Zinc finger homeobox pr 99.3 1.4E-12 4.7E-17 97.4 5.7 46 47-92 14-59 (71)
74 2lk2_A Homeobox protein TGIF1; 99.3 2.1E-12 7.3E-17 100.7 6.9 58 43-100 10-70 (89)
75 1ic8_A Hepatocyte nuclear fact 99.3 5.3E-13 1.8E-17 117.4 3.6 59 37-95 114-193 (194)
76 1mh3_A Maltose binding-A1 home 99.2 4.5E-12 1.6E-16 118.3 4.5 55 40-94 367-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 3E-11 1E-15 108.1 6.0 57 37-93 141-218 (221)
78 2nzz_A Penetratin conjugated G 98.6 2.7E-09 9.4E-14 70.3 -1.4 27 80-106 1-27 (37)
79 2ys9_A Homeobox and leucine zi 93.1 0.084 2.9E-06 39.1 3.8 40 50-89 18-57 (70)
80 1hjb_A Ccaat/enhancer binding 87.4 1.8 6.2E-05 33.0 6.9 47 89-138 28-74 (87)
81 2jn6_A Protein CGL2762, transp 86.5 1.2 4E-05 33.2 5.3 44 42-88 3-46 (97)
82 1gu4_A CAAT/enhancer binding p 84.9 1.5 5.2E-05 32.8 5.2 47 89-138 28-74 (78)
83 1t2k_D Cyclic-AMP-dependent tr 84.7 3.4 0.00012 28.9 6.8 38 101-138 23-60 (61)
84 1gd2_E Transcription factor PA 83.4 3.6 0.00012 30.1 6.6 39 100-138 29-67 (70)
85 2wt7_B Transcription factor MA 81.4 9 0.00031 29.4 8.4 63 76-138 17-86 (90)
86 2glo_A Brinker CG9653-PA; prot 80.9 2.4 8.1E-05 28.9 4.6 45 42-87 3-47 (59)
87 1hlv_A CENP-B, major centromer 79.2 4.4 0.00015 31.2 6.2 50 40-92 3-52 (131)
88 2wt7_A Proto-oncogene protein 78.9 9.2 0.00031 26.9 7.3 38 101-138 24-61 (63)
89 1jnm_A Proto-oncogene C-JUN; B 74.1 5 0.00017 28.2 4.7 37 102-138 24-60 (62)
90 2yy0_A C-MYC-binding protein; 73.4 5.2 0.00018 27.7 4.5 29 109-137 21-49 (53)
91 2elh_A CG11849-PA, LD40883P; s 73.3 9.1 0.00031 27.9 6.3 44 39-87 17-60 (87)
92 1ci6_A Transcription factor AT 71.8 18 0.00063 25.5 7.3 38 101-138 24-61 (63)
93 1gd2_E Transcription factor PA 65.5 13 0.00044 27.1 5.4 52 82-134 19-70 (70)
94 1tc3_C Protein (TC3 transposas 65.2 11 0.00039 22.9 4.6 40 44-88 5-44 (51)
95 2oxj_A Hybrid alpha/beta pepti 63.6 9.9 0.00034 24.1 3.8 27 112-138 6-32 (34)
96 2jee_A YIIU; FTSZ, septum, coi 60.8 35 0.0012 25.6 7.2 38 101-138 28-65 (81)
97 3c3g_A Alpha/beta peptide with 59.4 16 0.00055 23.0 4.2 25 114-138 7-31 (33)
98 1kd8_B GABH BLL, GCN4 acid bas 59.2 21 0.00073 22.8 4.8 29 111-139 5-33 (36)
99 2dgc_A Protein (GCN4); basic d 59.0 28 0.00097 24.5 6.2 29 110-138 33-61 (63)
100 3c3f_A Alpha/beta peptide with 57.8 17 0.00059 23.0 4.2 26 113-138 7-32 (34)
101 2yy0_A C-MYC-binding protein; 57.7 11 0.00039 25.9 3.7 25 114-138 19-43 (53)
102 3s4r_A Vimentin; alpha-helix, 57.1 40 0.0014 25.5 7.2 56 81-137 38-93 (93)
103 2wuj_A Septum site-determining 56.0 9.2 0.00031 26.5 3.1 29 109-137 29-57 (57)
104 3m48_A General control protein 55.3 15 0.00051 23.2 3.6 26 113-138 6-31 (33)
105 1jko_C HIN recombinase, DNA-in 54.7 7.7 0.00026 24.3 2.4 41 44-89 5-45 (52)
106 3iv1_A Tumor susceptibility ge 54.0 56 0.0019 24.3 7.3 51 88-138 13-63 (78)
107 3hug_A RNA polymerase sigma fa 54.0 28 0.00097 25.1 5.7 45 45-94 38-82 (92)
108 1t2k_D Cyclic-AMP-dependent tr 51.8 56 0.0019 22.5 6.7 28 109-136 24-51 (61)
109 1kd8_A GABH AIV, GCN4 acid bas 50.2 37 0.0013 21.7 4.9 28 112-139 6-33 (36)
110 2rn7_A IS629 ORFA; helix, all 48.0 30 0.001 25.6 5.2 46 42-87 4-52 (108)
111 2hy6_A General control protein 47.8 31 0.0011 21.8 4.2 26 113-138 7-32 (34)
112 2o8x_A Probable RNA polymerase 47.5 21 0.00071 23.9 3.8 45 44-93 15-59 (70)
113 1dh3_A Transcription factor CR 47.3 47 0.0016 22.8 5.6 27 110-136 25-51 (55)
114 2bni_A General control protein 46.9 28 0.00097 22.0 3.9 25 114-138 8-32 (34)
115 1p4w_A RCSB; solution structur 46.5 36 0.0012 25.7 5.4 46 42-93 32-77 (99)
116 3c57_A Two component transcrip 45.2 28 0.00096 25.6 4.5 45 44-94 27-71 (95)
117 2jee_A YIIU; FTSZ, septum, coi 44.8 89 0.0031 23.4 7.1 44 95-138 29-72 (81)
118 1gu4_A CAAT/enhancer binding p 44.3 93 0.0032 22.9 7.5 36 103-138 32-67 (78)
119 1s7o_A Hypothetical UPF0122 pr 43.4 1.1E+02 0.0037 23.4 8.3 46 44-94 22-67 (113)
120 3m9b_A Proteasome-associated A 42.3 42 0.0014 30.2 5.9 38 97-134 58-95 (251)
121 1uo4_A General control protein 41.7 37 0.0013 21.5 3.8 25 114-138 8-32 (34)
122 3w03_C DNA repair protein XRCC 41.2 57 0.002 28.0 6.3 31 107-137 152-182 (184)
123 1je8_A Nitrate/nitrite respons 39.8 59 0.002 23.1 5.5 45 44-94 21-65 (82)
124 1fse_A GERE; helix-turn-helix 39.5 42 0.0015 22.6 4.5 45 43-93 10-54 (74)
125 2xi8_A Putative transcription 39.5 20 0.00068 23.4 2.6 23 68-90 17-39 (66)
126 3b7h_A Prophage LP1 protein 11 39.2 20 0.0007 24.3 2.7 23 68-90 23-45 (78)
127 3hnw_A Uncharacterized protein 39.1 1.2E+02 0.0041 24.5 7.7 41 98-138 87-127 (138)
128 2a6c_A Helix-turn-helix motif; 39.0 24 0.00082 24.9 3.2 24 68-91 34-57 (83)
129 3i5g_B Myosin regulatory light 38.7 56 0.0019 25.6 5.6 42 40-81 5-51 (153)
130 3mzy_A RNA polymerase sigma-H 38.3 69 0.0024 24.3 6.1 43 45-93 110-152 (164)
131 2dgc_A Protein (GCN4); basic d 38.2 55 0.0019 23.0 4.9 32 100-131 30-61 (63)
132 2p7v_B Sigma-70, RNA polymeras 37.3 56 0.0019 22.1 4.8 50 44-94 5-54 (68)
133 2b5a_A C.BCLI; helix-turn-heli 37.1 31 0.0011 23.3 3.4 23 68-90 26-48 (77)
134 1x3u_A Transcriptional regulat 36.4 54 0.0019 22.4 4.7 45 45-95 17-61 (79)
135 3qq6_A HTH-type transcriptiona 36.2 24 0.00082 24.7 2.8 37 68-104 26-62 (78)
136 1iuf_A Centromere ABP1 protein 36.1 62 0.0021 25.6 5.5 51 39-89 6-60 (144)
137 2r1j_L Repressor protein C2; p 36.0 25 0.00086 23.0 2.7 24 68-91 21-44 (68)
138 1deb_A APC protein, adenomatou 35.2 46 0.0016 22.9 3.8 21 110-130 6-26 (54)
139 1go4_E MAD1 (mitotic arrest de 35.1 55 0.0019 25.4 4.8 30 108-137 13-42 (100)
140 1xsv_A Hypothetical UPF0122 pr 35.0 1.5E+02 0.005 22.5 7.4 47 44-95 25-71 (113)
141 1jnm_A Proto-oncogene C-JUN; B 34.7 54 0.0019 22.7 4.4 33 106-138 21-53 (62)
142 3gp4_A Transcriptional regulat 34.6 1.7E+02 0.0059 23.2 8.3 18 72-89 55-72 (142)
143 3s9g_A Protein hexim1; cyclin 34.2 1.2E+02 0.0042 23.5 6.6 35 101-135 52-86 (104)
144 3bs3_A Putative DNA-binding pr 33.8 33 0.0011 23.1 3.1 24 68-91 26-49 (76)
145 3g7r_A Putative transcriptiona 33.7 1.2E+02 0.0041 24.3 7.1 40 54-94 45-84 (221)
146 1ku3_A Sigma factor SIGA; heli 33.7 75 0.0026 21.7 5.0 49 44-93 10-58 (73)
147 3gpv_A Transcriptional regulat 33.6 1.8E+02 0.0062 23.1 8.1 18 72-89 69-86 (148)
148 3t76_A VANU, transcriptional r 33.4 31 0.001 25.4 3.0 37 68-106 40-76 (88)
149 1nkp_B MAX protein, MYC proto- 33.3 1.3E+02 0.0046 21.6 7.0 28 111-138 51-78 (83)
150 3omt_A Uncharacterized protein 33.2 33 0.0011 23.2 3.0 23 68-90 24-46 (73)
151 1nlw_A MAD protein, MAX dimeri 32.9 67 0.0023 23.5 4.8 30 109-138 49-78 (80)
152 1p9i_A Cortexillin I/GCN4 hybr 32.5 74 0.0025 19.2 4.0 23 114-136 6-28 (31)
153 1adr_A P22 C2 repressor; trans 32.3 31 0.0011 23.2 2.7 24 68-91 21-44 (76)
154 3m91_A Proteasome-associated A 32.1 1.2E+02 0.0041 20.6 6.0 33 105-137 14-46 (51)
155 3bd1_A CRO protein; transcript 32.1 24 0.00082 24.6 2.1 23 68-90 14-36 (79)
156 2wt7_A Proto-oncogene protein 31.7 1.3E+02 0.0044 20.8 7.0 31 107-137 23-53 (63)
157 1zug_A Phage 434 CRO protein; 31.7 23 0.00077 23.5 1.9 24 68-91 19-42 (71)
158 1a93_A Coiled coil, LZ, MYC pr 31.4 77 0.0026 20.0 4.1 28 111-138 4-31 (34)
159 3a5t_A Transcription factor MA 31.4 3.3 0.00011 32.8 -2.8 58 76-133 27-91 (107)
160 1u78_A TC3 transposase, transp 31.3 76 0.0026 23.9 5.1 42 43-89 5-46 (141)
161 2k27_A Paired box protein PAX- 30.9 1.2E+02 0.0041 23.8 6.5 41 43-88 24-64 (159)
162 2kpj_A SOS-response transcript 30.9 35 0.0012 24.5 3.0 24 68-91 25-48 (94)
163 1go4_E MAD1 (mitotic arrest de 30.8 84 0.0029 24.4 5.2 33 101-133 13-45 (100)
164 3pvv_A Chromosomal replication 30.8 47 0.0016 25.4 3.8 24 117-140 75-98 (101)
165 1rp3_A RNA polymerase sigma fa 30.7 46 0.0016 27.2 4.0 46 44-94 187-232 (239)
166 1hjb_A Ccaat/enhancer binding 30.7 1E+02 0.0034 23.2 5.5 36 103-138 32-67 (87)
167 2rnj_A Response regulator prot 30.5 44 0.0015 24.1 3.4 45 44-94 29-73 (91)
168 3ulq_B Transcriptional regulat 30.0 91 0.0031 22.7 5.2 43 41-89 26-68 (90)
169 2lv7_A Calcium-binding protein 29.7 1.6E+02 0.0056 21.4 8.4 47 41-87 26-79 (100)
170 1r69_A Repressor protein CI; g 29.5 29 0.00099 22.8 2.1 24 68-91 17-40 (69)
171 1tty_A Sigma-A, RNA polymerase 29.0 88 0.003 22.3 4.9 50 44-94 18-67 (87)
172 1deb_A APC protein, adenomatou 29.0 81 0.0028 21.7 4.2 23 116-138 5-27 (54)
173 3hh0_A Transcriptional regulat 28.1 1.6E+02 0.0054 23.5 6.7 15 73-87 58-72 (146)
174 3gpv_A Transcriptional regulat 28.1 2.3E+02 0.0077 22.5 8.0 32 42-73 52-84 (148)
175 2cqr_A RSGI RUH-043, DNAJ homo 27.8 1.7E+02 0.0058 21.0 6.4 43 42-84 18-61 (73)
176 2wq1_A General control protein 27.6 95 0.0032 19.4 4.0 24 115-138 8-31 (33)
177 3m91_A Proteasome-associated A 27.5 1.5E+02 0.005 20.2 5.9 35 99-133 15-49 (51)
178 1y7y_A C.AHDI; helix-turn-heli 27.2 42 0.0014 22.3 2.7 23 68-90 29-51 (74)
179 3gp4_A Transcriptional regulat 27.1 2.3E+02 0.008 22.4 10.7 32 42-73 38-70 (142)
180 2k9q_A Uncharacterized protein 27.1 47 0.0016 22.7 3.0 23 68-90 18-40 (77)
181 2kvr_A Ubiquitin carboxyl-term 26.9 20 0.00067 28.8 1.0 24 67-90 71-94 (130)
182 1ci6_A Transcription factor AT 26.3 1.7E+02 0.0056 20.4 6.5 27 109-135 25-51 (63)
183 1fi6_A EH domain protein REPS1 26.2 73 0.0025 22.7 4.0 43 45-87 3-50 (92)
184 2wiu_B HTH-type transcriptiona 25.5 44 0.0015 23.2 2.6 23 68-90 28-50 (88)
185 1b0n_A Protein (SINR protein); 24.8 47 0.0016 24.1 2.8 20 69-88 18-37 (111)
186 3s9g_A Protein hexim1; cyclin 24.8 1.2E+02 0.0043 23.5 5.1 23 109-131 67-89 (104)
187 2jpc_A SSRB; DNA binding prote 24.7 49 0.0017 21.5 2.6 26 69-94 17-42 (61)
188 2x48_A CAG38821; archeal virus 24.6 38 0.0013 21.8 2.0 36 47-87 18-53 (55)
189 3f6w_A XRE-family like protein 24.2 71 0.0024 21.9 3.5 23 68-90 30-52 (83)
190 3kz3_A Repressor protein CI; f 24.1 36 0.0012 23.6 1.9 24 68-91 28-51 (80)
191 2ofy_A Putative XRE-family tra 23.9 46 0.0016 23.2 2.5 24 67-90 29-52 (86)
192 1or7_A Sigma-24, RNA polymeras 23.9 84 0.0029 24.8 4.4 44 45-93 141-184 (194)
193 1a93_B MAX protein, coiled coi 23.8 1.2E+02 0.004 19.2 4.0 24 114-137 7-30 (34)
194 3mq7_A Bone marrow stromal ant 23.8 2.1E+02 0.007 22.9 6.4 61 76-136 40-107 (121)
195 3bdn_A Lambda repressor; repre 23.6 43 0.0015 28.0 2.6 24 67-90 32-55 (236)
196 2r2v_A GCN4 leucine zipper; co 23.5 1.4E+02 0.0048 18.8 4.2 24 115-138 9-32 (34)
197 2ef8_A C.ECOT38IS, putative tr 23.0 41 0.0014 23.0 2.0 24 68-91 26-49 (84)
198 3w03_C DNA repair protein XRCC 22.8 1.5E+02 0.0051 25.3 5.8 38 101-138 139-176 (184)
199 3mq7_A Bone marrow stromal ant 22.7 2.5E+02 0.0086 22.4 6.7 21 121-141 71-91 (121)
200 1no4_A Late, head morphogenesi 22.7 2.5E+02 0.0084 21.1 6.9 46 98-143 31-76 (97)
201 1lmb_3 Protein (lambda repress 22.7 98 0.0034 21.6 4.1 38 68-106 33-70 (92)
202 3o9x_A Uncharacterized HTH-typ 22.5 66 0.0023 24.5 3.3 40 45-91 71-110 (133)
203 1pdn_C Protein (PRD paired); p 22.5 1.7E+02 0.0057 21.2 5.6 45 42-91 15-59 (128)
204 2pmy_A RAS and EF-hand domain- 22.4 65 0.0022 22.6 3.1 44 44-87 20-68 (91)
205 2wuj_A Septum site-determining 22.1 47 0.0016 22.8 2.1 37 93-129 20-56 (57)
206 1nkp_A C-MYC, MYC proto-oncoge 21.6 1.4E+02 0.0048 22.1 4.8 28 111-138 56-83 (88)
207 1q06_A Transcriptional regulat 21.5 2.9E+02 0.0099 21.5 7.5 17 72-88 53-69 (135)
208 2fxo_A Myosin heavy chain, car 21.1 3E+02 0.01 21.5 7.4 48 92-139 75-122 (129)
209 3gyk_A 27KDA outer membrane pr 20.9 2.4E+02 0.0082 21.8 6.5 41 51-91 86-126 (175)
210 2ict_A Antitoxin HIGA; helix-t 20.8 1.4E+02 0.0047 21.0 4.6 23 68-90 24-46 (94)
211 2v71_A Nuclear distribution pr 20.4 3.1E+02 0.011 23.4 7.4 19 94-112 64-82 (189)
212 3op9_A PLI0006 protein; struct 20.4 73 0.0025 23.5 3.1 22 69-90 26-47 (114)
213 3oja_A Leucine-rich immune mol 20.1 2.8E+02 0.0097 25.7 7.8 32 107-138 435-466 (487)
214 3fmy_A HTH-type transcriptiona 20.1 55 0.0019 22.5 2.1 41 44-91 10-50 (73)
215 2v4h_A NF-kappa-B essential mo 20.1 3.2E+02 0.011 21.5 6.9 38 101-138 63-100 (110)
216 2rgt_A Fusion of LIM/homeobox 20.0 2.1 7.2E-05 35.2 -6.3 29 37-65 135-163 (169)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=129.59 Aligned_cols=63 Identities=37% Similarity=0.538 Sum_probs=58.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..+++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 345667778899999999999999999999999999999999999999999999999999753
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=129.95 Aligned_cols=63 Identities=24% Similarity=0.426 Sum_probs=58.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..+++|+|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+++|+.+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 345667788899999999999999999999999999999999999999999999999999864
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.8e-18 Score=124.73 Aligned_cols=62 Identities=27% Similarity=0.520 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34677888999999999999999999999999999999999999999999999999999854
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=3e-18 Score=123.80 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
.++++|+.||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 356778889999999999999999999999999999999999999999999999999985
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=6.5e-18 Score=128.84 Aligned_cols=63 Identities=25% Similarity=0.379 Sum_probs=58.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
...++++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+++|+.+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345567778899999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.73 E-value=5.9e-18 Score=127.50 Aligned_cols=65 Identities=34% Similarity=0.459 Sum_probs=59.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 101 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~ 101 (278)
.++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+....+.
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~ 72 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKG 72 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcccc
Confidence 45566778999999999999999999999999999999999999999999999999998765543
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5e-18 Score=125.57 Aligned_cols=62 Identities=24% Similarity=0.449 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 35677888999999999999999999999999999999999999999999999999999754
No 8
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.73 E-value=6.4e-18 Score=122.60 Aligned_cols=60 Identities=35% Similarity=0.613 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
..+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 356788899999999999999999999999999999999999999999999999999975
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=9.7e-18 Score=124.03 Aligned_cols=61 Identities=43% Similarity=0.657 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567788999999999999999999999999999999999999999999999999999864
No 10
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.2e-17 Score=126.65 Aligned_cols=64 Identities=27% Similarity=0.513 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 99 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~ 99 (278)
...+++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+++|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3456788899999999999999999999999999999999999999999999999999986533
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=126.06 Aligned_cols=63 Identities=24% Similarity=0.464 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
..++|+|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999999999999999999998653
No 12
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=6.8e-18 Score=121.60 Aligned_cols=58 Identities=31% Similarity=0.611 Sum_probs=53.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4677889999999999999999999999999999999999999999999999999986
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=123.85 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 35667888999999999999999999999999999999999999999999999999999753
No 14
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-17 Score=118.78 Aligned_cols=57 Identities=33% Similarity=0.530 Sum_probs=54.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467888999999999999999999999999999999999999999999999999986
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.3e-17 Score=126.31 Aligned_cols=62 Identities=24% Similarity=0.392 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 35677888999999999999999999999999999999999999999999999999999864
No 16
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=127.49 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEV----ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~----~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
..++|+|+.||.+|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 356677888999999999999999 999999999999999999999999999999999875
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=2.3e-17 Score=124.26 Aligned_cols=62 Identities=37% Similarity=0.487 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
..+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 45677888999999999999999999999999999999999999999999999999998653
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=123.39 Aligned_cols=62 Identities=23% Similarity=0.406 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 35677888999999999999999999999999999999999999999999999999999753
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=123.92 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34567788999999999999999999999999999999999999999999999999998753
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=2.1e-17 Score=125.45 Aligned_cols=62 Identities=27% Similarity=0.478 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.+++++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 34567778899999999999999999999999999999999999999999999999999864
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=2.1e-17 Score=121.67 Aligned_cols=61 Identities=33% Similarity=0.461 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 4677889999999999999999999999999999999999999999999999999998653
No 22
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.70 E-value=2.4e-17 Score=123.10 Aligned_cols=62 Identities=27% Similarity=0.458 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34577888999999999999999999999999999999999999999999999999999753
No 23
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=117.18 Aligned_cols=57 Identities=37% Similarity=0.483 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
++++|++|+..|+..||..|..++||+..++.+||..|||+++||++||||||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456788899999999999999999999999999999999999999999999999975
No 24
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.70 E-value=1.1e-17 Score=122.28 Aligned_cols=60 Identities=27% Similarity=0.475 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 567788899999999999999999999999999999999999999999999999999754
No 25
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.70 E-value=2.2e-17 Score=127.31 Aligned_cols=62 Identities=37% Similarity=0.601 Sum_probs=54.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
.+..+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 34567788899999999999999999999999999999999999999999999999999975
No 26
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.8e-17 Score=125.83 Aligned_cols=59 Identities=25% Similarity=0.311 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 40 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 40 rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
.+|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+++|+..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999998654
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.70 E-value=1.8e-17 Score=122.17 Aligned_cols=60 Identities=38% Similarity=0.663 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 467788999999999999999999999999999999999999999999999999999864
No 28
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=2.4e-17 Score=118.31 Aligned_cols=58 Identities=36% Similarity=0.535 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678889999999999999999999999999999999999999999999999999874
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=1e-17 Score=123.29 Aligned_cols=61 Identities=28% Similarity=0.547 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999999864
No 30
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=3e-17 Score=128.24 Aligned_cols=65 Identities=32% Similarity=0.559 Sum_probs=59.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 101 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~ 101 (278)
.++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+...+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 45667788999999999999999999999999999999999999999999999999998765543
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=3.4e-17 Score=121.73 Aligned_cols=59 Identities=31% Similarity=0.570 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~-~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.++|++|+..|+..||..|.. ++||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467888999999999999996 99999999999999999999999999999999999864
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=126.52 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=55.2
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
...++|+|+.||.+|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+++|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34566778889999999999 7999 999999999999999999999999999999999875
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=3.3e-17 Score=120.66 Aligned_cols=60 Identities=32% Similarity=0.505 Sum_probs=56.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
++++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 456788899999999999999999999999999999999999999999999999999864
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.69 E-value=2.2e-17 Score=125.70 Aligned_cols=61 Identities=36% Similarity=0.549 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.++++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4567888999999999999999999999999999999999999999999999999999853
No 35
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=122.73 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45777899999999999999999999999999999999999999999999999999864
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=125.80 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVE----NKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~----~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.++++|+.||.+|+.+||..|..+ +||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456778889999999999999999 9999999999999999999999999999999999854
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=4.2e-17 Score=121.44 Aligned_cols=62 Identities=31% Similarity=0.507 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
+++++.|++|+..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999753
No 38
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=2.6e-17 Score=118.29 Aligned_cols=58 Identities=34% Similarity=0.620 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
+++++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4566778899999999999999999999999999999999999999999999999975
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=5.5e-17 Score=120.99 Aligned_cols=59 Identities=29% Similarity=0.527 Sum_probs=55.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~-~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
+++|++||..|+..||..|.. ++||+..++..||..|||+++||++||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467788999999999999995 99999999999999999999999999999999999864
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=119.43 Aligned_cols=60 Identities=32% Similarity=0.486 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 577889999999999999999999999999999999999999999999999999998653
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=114.91 Aligned_cols=54 Identities=35% Similarity=0.611 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 43 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
+.||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 469999999999999999999999999999999999999999999999999974
No 42
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=9e-17 Score=119.59 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
..+++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45677888999999999999987 999999999999999999999999999999999998654
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.67 E-value=5.1e-17 Score=116.61 Aligned_cols=57 Identities=32% Similarity=0.586 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 41 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 41 kR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.|++||..|+..||..|..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467899999999999999999999999999999999999999999999999999753
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.67 E-value=7.5e-17 Score=126.42 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 99 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~ 99 (278)
..+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.+++
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 345678889999999999999999999999999999999999999999999999999997644
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.9e-17 Score=121.70 Aligned_cols=60 Identities=25% Similarity=0.331 Sum_probs=56.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..+.|++||.+|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 455688899999999999999999999999999999999999999999999999999854
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=8.7e-17 Score=126.16 Aligned_cols=62 Identities=34% Similarity=0.532 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
...+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 35667788899999999999999999999999999999999999999999999999999864
No 47
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=9e-17 Score=119.60 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 100 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F---~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k 100 (278)
+++|++|+..|+.+||.+| ..++||+..++..||..+||+++||++||||||+++|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 5778899999999999999 8999999999999999999999999999999999999865543
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=8.7e-17 Score=125.42 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 40 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 40 rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
++.++||.+|+..||..|..++||+..+|.+||..|||+++||+|||||||++|+++.
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3455899999999999999999999999999999999999999999999999998754
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=119.04 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.++.|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+++|+..
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 356788899999999999999999999999999999999999999999999999999864
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.65 E-value=1.7e-16 Score=113.81 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 41 KKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 41 kR~rft~eQl~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
+|++|+..|+.+||..|.. ++||+..++..||.++||+++||++||||||+++|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999863
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=2.4e-16 Score=120.82 Aligned_cols=62 Identities=29% Similarity=0.420 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 100 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F---~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k 100 (278)
+|+|++|+..|+.+||.+| ..++||+..++..||..|||+++||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5778899999999999999 8999999999999999999999999999999999999876443
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=5.8e-17 Score=121.27 Aligned_cols=59 Identities=27% Similarity=0.375 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 39 PEKKRRLTVDQVQFLEKSF-EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F-~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.++|++++.+|+..||..| ..++||+..++.+||..|||+++||+|||||||+++|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4567789999999999999 9999999999999999999999999999999999999753
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.1e-16 Score=116.13 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSF---EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F---~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
++++|++|+..|+.+||.+| ..++||+..++.+||..+||+++||++||||||+++|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 89999999999999999999999999999999999885
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=119.98 Aligned_cols=64 Identities=23% Similarity=0.296 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLE 99 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~ 99 (278)
..++++|++|+..|+.+|+.+|.. ++||+..+|.+||..+||+++||++||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345677788999999999999988 5999999999999999999999999999999999986543
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=3.7e-16 Score=122.15 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------CCchhhhhHhhhhhhHHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------LQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~Lg---------------Ls~rQVqvWFQNRRak~K~k~~ 98 (278)
.+++|.|++|+..|+.+||..|..++||+..+|.+||..|| |++.+|++||||||+++|++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35667788899999999999999999999999999999999 9999999999999999998653
No 56
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=2e-16 Score=120.93 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=56.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHH
Q 023725 38 QPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKD 101 (278)
Q Consensus 38 ~~rkR~rft~eQl~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~ 101 (278)
++++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+++|+......
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 3456777999999999999999 999999999999999999999999999999999998754433
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.63 E-value=3.8e-16 Score=120.13 Aligned_cols=60 Identities=30% Similarity=0.419 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
..++++|++|+..|+.+||.+|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345667888999999999999999 999999999999999999999999999999999873
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=121.24 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=54.2
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 40 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 40 rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
++++++|..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4556699999999999999999999999999999999999999999999999998754
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=3.9e-16 Score=131.21 Aligned_cols=61 Identities=25% Similarity=0.468 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
.+++|+|++|+..|+..||..|..++||+..+|..||..|||+++||++||||||+|+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3456677889999999999999999999999999999999999999999999999999974
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.60 E-value=5.7e-16 Score=131.85 Aligned_cols=62 Identities=26% Similarity=0.399 Sum_probs=54.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
..+++|+|++|+..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34567778889999999999999999999999999999999999999999999999999974
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=112.54 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 45 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 45 ft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.|.+|+..||..|..++||+..++.+||..|||+.+||++||||||+++|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 56899999999999999999999999999999999999999999999999754
No 62
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=3.9e-16 Score=116.23 Aligned_cols=56 Identities=43% Similarity=0.603 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHH
Q 023725 43 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQL 98 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~ 98 (278)
..+|..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|+...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35899999999999999999999999999999999999999999999999998654
No 63
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=5.6e-16 Score=114.05 Aligned_cols=50 Identities=28% Similarity=0.473 Sum_probs=46.8
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 47 VDQVQFLEKSF-EVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 47 ~eQl~~LE~~F-~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
+.|+..||+.| ..++||+..+|.+||++|||+++||++||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 568999999999999999999999999999999999874
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=127.97 Aligned_cols=60 Identities=23% Similarity=0.415 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
.+++|+|++|+..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345667778999999999999999999999999999999999999999999999999986
No 65
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.59 E-value=7.8e-16 Score=131.83 Aligned_cols=63 Identities=27% Similarity=0.305 Sum_probs=51.8
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 35 YFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 35 ~~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
..+++|+|++|+..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|+..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 345667778899999999999999999999999999999999999999999999999999865
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.4e-15 Score=111.95 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEV-ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~-~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.++|.|+.|+.+|+.+|+..|+. ++||+.+.|..||.+|||++++|++||||||.-.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 46778888999999999999999 99999999999999999999999999999997554
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-15 Score=109.71 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 43 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
...+..|+..||..|..++||+..+|.+||..|||+++||++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34678999999999999999999999999999999999999999999998875
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=2.8e-15 Score=127.05 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTK 96 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k 96 (278)
+++|+|++|+..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 556778889999999999999999999999999999999999999999999999999974
No 69
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.2e-15 Score=116.96 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh---------------------CCCchhhhhHhhhhhhHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDL---------------------GLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~L---------------------gLs~rQVqvWFQNRRak~K~ 95 (278)
+++|+|++|+..|+.+||..|..++||+..+|++||..| +|++.+|++||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 466778889999999999999999999999999999999 79999999999999999998
Q ss_pred HH
Q 023725 96 KQ 97 (278)
Q Consensus 96 k~ 97 (278)
++
T Consensus 85 ~~ 86 (102)
T 2da6_A 85 RQ 86 (102)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.54 E-value=2.8e-15 Score=118.91 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------hC---CCchhhhhHhhhhhhHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKD------------------LG---LQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~------------------Lg---Ls~rQVqvWFQNRRak~K 94 (278)
.+++|.|+.|+..|+.+||..|..++||+..+|.+||.. || |++.+|++||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 345677778999999999999999999999999999999 88 999999999999999998
Q ss_pred HHHH
Q 023725 95 TKQL 98 (278)
Q Consensus 95 ~k~~ 98 (278)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 8653
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=5.2e-15 Score=108.99 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHHH
Q 023725 44 RLTVDQVQFLEKSFE---VENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDY 102 (278)
Q Consensus 44 rft~eQl~~LE~~F~---~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~~ 102 (278)
+|+.+|+.+|+.+|. .++||+..++.+||..+||+.+||++||||||+|+|+..+++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 699999999999999 99999999999999999999999999999999999987766543
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.53 E-value=5.4e-15 Score=125.75 Aligned_cols=62 Identities=24% Similarity=0.266 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHH
Q 023725 36 FHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQ 97 (278)
Q Consensus 36 ~~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~ 97 (278)
.+++|+|++||..|+..||..|..++||+..+|..||..|||+++||++||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 34567788899999999999999999999999999999999999999999999999999754
No 73
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=97.45 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhH
Q 023725 47 VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRAR 92 (278)
Q Consensus 47 ~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak 92 (278)
.+|+..|+.+|..+++|+.+++..||..+||+.++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999974
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-12 Score=100.66 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHH
Q 023725 43 RRLTVDQVQFLEKSFEV---ENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEK 100 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k 100 (278)
.-|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||+|||.|.++..+++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 35899999999999987 99999999999999999999999999999999999865443
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=5.3e-13 Score=117.39 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CCchhhhhHhhhhhhHHHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------------LQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~Lg---------------------Ls~rQVqvWFQNRRak~K~ 95 (278)
+++|+|+.|+..|+..||+.|..++||+...|.+||..|| |++.+|++||||||++.|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 4556677799999999999999999999999999999999 9999999999999999874
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.22 E-value=4.5e-12 Score=118.26 Aligned_cols=55 Identities=33% Similarity=0.575 Sum_probs=51.8
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 40 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 40 rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
+.++.++..|+..||+.|+.++||+..+|.+||++|||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 4456799999999999999999999999999999999999999999999999876
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=3e-11 Score=108.10 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=51.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CCchhhhhHhhhhhhHH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLG---------------------LQPRQVAIWFQNRRARW 93 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~Lg---------------------Ls~rQVqvWFQNRRak~ 93 (278)
+++|.|+.|+..|+.+||..|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 3455566799999999999999999999999999999988 89999999999999865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.59 E-value=2.7e-09 Score=70.29 Aligned_cols=27 Identities=48% Similarity=1.067 Sum_probs=22.2
Q ss_pred hhhhhHhhhhhhHHHHHHHHHHHHHHh
Q 023725 80 RQVAIWFQNRRARWKTKQLEKDYDVLQ 106 (278)
Q Consensus 80 rQVqvWFQNRRak~K~k~~~k~~~~l~ 106 (278)
+||+|||||||+|||+...++.++.++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999988776655433
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.11 E-value=0.084 Score=39.05 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=37.2
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhh
Q 023725 50 VQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 89 (278)
Q Consensus 50 l~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNR 89 (278)
...|+.+|...+.+.......|+.+.+|+..||+-||-.|
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999543
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.43 E-value=1.8 Score=33.05 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 89 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 89 RRak~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
||++.|++..+ ..+......|..+|..|..+.+.|+.|+..|+..|.
T Consensus 28 rrSR~krk~r~---~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 28 RKSRDKAKMRN---LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655443 335566778888888888888888888888887776
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.51 E-value=1.2 Score=33.16 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhh
Q 023725 42 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 88 (278)
Q Consensus 42 R~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQN 88 (278)
|++++.++....-..+... ......++|+.+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888766544444322 0123678999999999999999753
No 82
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=84.91 E-value=1.5 Score=32.80 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 89 RRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 89 RRak~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
||++.|++..+. .+......|..+|..|..+.+.|..|+..|++.|.
T Consensus 28 krSR~krk~r~~---e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666654443 34556667777788888888888888777765443
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.74 E-value=3.4 Score=28.91 Aligned_cols=38 Identities=24% Similarity=0.179 Sum_probs=31.2
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
....|......|...+..|..+...|+.|+..|+..|+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777888888899999999999999999988775
No 84
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.43 E-value=3.6 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 100 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 100 k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
.....|......|...+..+..||+.|+.++..|...+.
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666677777777777777777766553
No 85
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=81.37 E-value=9 Score=29.39 Aligned_cols=63 Identities=21% Similarity=0.152 Sum_probs=38.8
Q ss_pred CCCchhhhhHhhhhhhHHH-------HHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 76 GLQPRQVAIWFQNRRARWK-------TKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 76 gLs~rQVqvWFQNRRak~K-------~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
||+..+|..|=|-||+-.- +.+.......|......|...-+.|..|+..+..|+..++.++.
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887666663211 11222333455566666677777777777777777777766654
No 86
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=80.86 E-value=2.4 Score=28.85 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhh
Q 023725 42 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 87 (278)
Q Consensus 42 R~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQ 87 (278)
|++++.+........+. ..........++|+++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~-~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR-NDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHH-HCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH-cCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45688888766644443 3332222367899999999999999964
No 87
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.17 E-value=4.4 Score=31.24 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhH
Q 023725 40 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRAR 92 (278)
Q Consensus 40 rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak 92 (278)
++|+++|.++...+-..+..+..+. ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3567899999877666665555443 3368999999999999998776654
No 88
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.90 E-value=9.2 Score=26.94 Aligned_cols=38 Identities=29% Similarity=0.180 Sum_probs=29.3
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
....|......|...+..|..+...|+.|+..|+..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888888888888888888888877665
No 89
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.12 E-value=5 Score=28.19 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 102 YDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 102 ~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
...|......|...+..|..+...|+.|+..|+..|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777777777777766554
No 90
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=73.39 E-value=5.2 Score=27.67 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=15.9
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 109 YNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 109 ~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
++.|+.++..|+.+++.|..++.+|+.+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544
No 91
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.32 E-value=9.1 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=31.1
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhh
Q 023725 39 PEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 87 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQ 87 (278)
++++++++.++....-..+. ... -..++|+.+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34556799988655444554 222 356889999999999999964
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.77 E-value=18 Score=25.46 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
....|......|...|..|..+...|+.|+..|++-|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677778888888888888888888888876553
No 93
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.51 E-value=13 Score=27.10 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=37.9
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 023725 82 VAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 134 (278)
Q Consensus 82 VqvWFQNRRak~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~ 134 (278)
-+.=|+.|+ ....+.++.....|...+..+..++..|..++..|..|+..|+
T Consensus 19 AQRafReRK-~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 19 AQRAFRKRK-EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455444 3344567777778888888889999999999999999987653
No 94
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=65.25 E-value=11 Score=22.95 Aligned_cols=40 Identities=5% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhh
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 88 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQN 88 (278)
.++.++...+-..+... . ...++|+.||++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47777765544445322 2 3668999999999999999754
No 95
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.56 E-value=9.9 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=21.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 112 LKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 112 Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
|-...+.|..+|..|+.|+.+|++-|.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 334456788899999999999987664
No 96
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.82 E-value=35 Score=25.60 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=15.7
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+.+.|+..+..|...+..+....+.|..|+.+|++...
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444444444444333322222224555555554443
No 97
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=59.38 E-value=16 Score=22.98 Aligned_cols=25 Identities=4% Similarity=0.169 Sum_probs=20.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 114 ADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 114 ~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
...+.|..+|..|+.|+.+|++-|.
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3456688899999999999987664
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=59.20 E-value=21 Score=22.83 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=22.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023725 111 SLKADYDNLFKEKEKLKAEVLKLTDKLQV 139 (278)
Q Consensus 111 ~Lk~~~~~l~~ene~L~~E~~~L~~~l~~ 139 (278)
.|..-.+.|..+|..|+.|+.+|++.+..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 34455667888999999999999887753
No 99
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=58.96 E-value=28 Score=24.54 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=18.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 110 NSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 110 ~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
..|......|..+|..|..++..|++.+.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556677777778888777776553
No 100
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.84 E-value=17 Score=22.97 Aligned_cols=26 Identities=8% Similarity=0.157 Sum_probs=20.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 113 KADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 113 k~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
-...+.|..+|..|..|+.+|++-|.
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33456788899999999999987664
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.72 E-value=11 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 114 ADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 114 ~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
.++++|+.|++.|+.++..|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655554
No 102
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.08 E-value=40 Score=25.51 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=30.0
Q ss_pred hhhhHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 81 QVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 81 QVqvWFQNRRak~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
++..|-+......+. .-+.....|+...+.+..++..+..+.+.|..++.+++.+|
T Consensus 38 ~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 38 ELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445554333332222 12344455556666666666666666666666666666553
No 103
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=56.05 E-value=9.2 Score=26.55 Aligned_cols=29 Identities=24% Similarity=0.587 Sum_probs=18.2
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 109 YNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 109 ~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
.+.+...+..+..+|..|+.++.+|+++|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566677778888888888888777654
No 104
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.31 E-value=15 Score=23.16 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 113 KADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 113 k~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
-...+.|..+|..|+.|+.+|++-|.
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 33456788899999999999987553
No 105
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=54.71 E-value=7.7 Score=24.28 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhh
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 89 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNR 89 (278)
.++.++...+...+... ....+||+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 35666655544445432 235689999999999999998643
No 106
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=54.03 E-value=56 Score=24.30 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 88 NRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 88 NRRak~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+||.+.+-.+...+.++|+..-+.|+.-...|..-..+|+.|...|...+.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777788888888777777777777777777777666655444
No 107
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=53.96 E-value=28 Score=25.15 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 45 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 45 ft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
++..+..+|...|-.. ..-.++|..||++...|+.+...-|.+.|
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7777877777755322 24678999999999999988754444333
No 108
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=51.80 E-value=56 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=13.2
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023725 109 YNSLKADYDNLFKEKEKLKAEVLKLTDK 136 (278)
Q Consensus 109 ~~~Lk~~~~~l~~ene~L~~E~~~L~~~ 136 (278)
...|......|..+|..|+.++..|+..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555554444443
No 109
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=50.24 E-value=37 Score=21.70 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023725 112 LKADYDNLFKEKEKLKAEVLKLTDKLQV 139 (278)
Q Consensus 112 Lk~~~~~l~~ene~L~~E~~~L~~~l~~ 139 (278)
|-.....|..+|..|..|+.+|++-+..
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4445567888999999999999876653
No 110
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=48.03 E-value=30 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHh-hhc-CCCC-HHHHHHHHHHhCCCchhhhhHhh
Q 023725 42 KRRLTVDQVQFLEKSF-EVE-NKLE-PERKIQLAKDLGLQPRQVAIWFQ 87 (278)
Q Consensus 42 R~rft~eQl~~LE~~F-~~~-~~P~-~~~r~eLA~~LgLs~rQVqvWFQ 87 (278)
+++|+.++....-..+ ... .+++ .....++|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888775443333 321 1222 24677899999999999999964
No 111
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=47.84 E-value=31 Score=21.78 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 113 KADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 113 k~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
-...+.|..+|..|..|+.+|++-+.
T Consensus 7 EdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 7 ADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34456688899999999999987764
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=47.52 E-value=21 Score=23.94 Aligned_cols=45 Identities=18% Similarity=0.021 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 93 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~ 93 (278)
.+++.+..+|...|-.. ..-.++|..+|++...|+.+...-+.+.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 47888888888776332 2356899999999999999875444333
No 113
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=47.35 E-value=47 Score=22.76 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=18.0
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023725 110 NSLKADYDNLFKEKEKLKAEVLKLTDK 136 (278)
Q Consensus 110 ~~Lk~~~~~l~~ene~L~~E~~~L~~~ 136 (278)
+.|-.....|..+|..|+.++..|+..
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777787777777644
No 114
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=46.91 E-value=28 Score=22.01 Aligned_cols=25 Identities=8% Similarity=0.278 Sum_probs=19.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 114 ADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 114 ~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
...+.|..+|..|..|+++|++-|.
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3446688899999999999987654
No 115
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=46.47 E-value=36 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHH
Q 023725 42 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 93 (278)
Q Consensus 42 R~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~ 93 (278)
...++..+..+|...+.-. .-.++|..||+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4569999999998765322 237899999999999999876444333
No 116
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.19 E-value=28 Score=25.62 Aligned_cols=45 Identities=20% Similarity=0.098 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.++..+..+|...+.-. ...++|..||++...|+.+..+-+.+.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 49999999988864322 2478999999999999998765554444
No 117
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.80 E-value=89 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 95 TKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 95 ~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
...++.....|......++...+.|..+|++|+.|...-.+++.
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666777777777777777777666555443
No 118
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.33 E-value=93 Score=22.91 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=26.4
Q ss_pred HHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 103 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 103 ~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+.-+.....+......|..||..|+.++..|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556777778888889999988888876654
No 119
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.36 E-value=1.1e+02 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.+++.+..++...|... ..-.++|..+|++...|+.|...-|.+.+
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr 67 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47888888887775433 23578999999999999999875554444
No 120
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.35 E-value=42 Score=30.17 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHH
Q 023725 97 QLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLT 134 (278)
Q Consensus 97 ~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~ 134 (278)
.+......|.+.+.+|......+..|..+|+.|+.+|+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566677777777777777777777777777775
No 121
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=41.67 E-value=37 Score=21.45 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=19.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 114 ADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 114 ~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
...+.|..+|..|..|+.+|++-|.
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3445688899999999999987554
No 122
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=41.22 E-value=57 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=18.1
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 107 NSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 107 ~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
..+..|.+.+..|.++|++|+.|..+..+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666665555443
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.84 E-value=59 Score=23.08 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.++..+..+|...+. ...-.++|..||++...|+.+..+-+.+.+
T Consensus 21 ~Lt~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 21 QLTPRERDILKLIAQ------GLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GSCHHHHHHHHHHTT------TCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 499999999888532 234678999999999999998765444443
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.53 E-value=42 Score=22.56 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHH
Q 023725 43 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 93 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~ 93 (278)
..++..+..+|...+. .+ ...++|..+|++...|..+..+-+.+.
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4589999999888432 22 456899999999999998876544433
No 125
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=39.49 E-value=20 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 126
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=39.19 E-value=20 Score=24.33 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998766
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.14 E-value=1.2e+02 Score=24.51 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 98 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 98 ~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
..++...|+.....+....+.+.++++.|+.++..|..++.
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555566666666655555443
No 128
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=39.01 E-value=24 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987763
No 129
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.65 E-value=56 Score=25.58 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=33.3
Q ss_pred CCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCchh
Q 023725 40 EKKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQ 81 (278)
Q Consensus 40 rkR~rft~eQl~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs~rQ 81 (278)
.+|..+|.+|+..|...|.. ..+.+..+...+.+.||..+..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~ 51 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPD 51 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccH
Confidence 45567999999999999974 4579999999999999876543
No 130
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=38.26 E-value=69 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHH
Q 023725 45 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 93 (278)
Q Consensus 45 ft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~ 93 (278)
+++.+..+|. .| .....-.++|..||++...|+.+...-|.+.
T Consensus 110 L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 110 FSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp SCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5666666665 22 2333567899999999999998875433333
No 131
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=38.22 E-value=55 Score=23.01 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHH
Q 023725 100 KDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 131 (278)
Q Consensus 100 k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~ 131 (278)
.....|......|...|..|..+.+.|+.++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777788888889999999999888764
No 132
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.30 E-value=56 Score=22.06 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.+++.+..+|...|....+ ....-.++|..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3788888888888732111 1123467999999999999998654444333
No 133
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=37.12 E-value=31 Score=23.28 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999998765
No 134
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=36.38 E-value=54 Score=22.42 Aligned_cols=45 Identities=27% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 45 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 45 ft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
+++.+..+|...+. . ....++|..+|++...|+.+..+-+.+.+.
T Consensus 17 L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 77888888877432 2 234589999999999999987655554443
No 135
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=36.16 E-value=24 Score=24.72 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHHHHH
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDV 104 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~~~~ 104 (278)
..+||..+|++...|..|-.+++..-....+.+-...
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~ 62 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAV 62 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3567888999998888888773333333333333333
No 136
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=36.11 E-value=62 Score=25.64 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHH-HHh--CCCchhhhhHhhhh
Q 023725 39 PEKKRRLTVDQVQFLEKSF-EVENKLEPERKIQLA-KDL--GLQPRQVAIWFQNR 89 (278)
Q Consensus 39 ~rkR~rft~eQl~~LE~~F-~~~~~P~~~~r~eLA-~~L--gLs~rQVqvWFQNR 89 (278)
+++|+++|.+|...+-..+ ..++..+..+...-| .++ |++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678889999999988888 677776655443322 267 77888888887653
No 137
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.98 E-value=25 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 138
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=35.19 E-value=46 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=8.7
Q ss_pred hhHHHhhHHHHHHHHHHHHHH
Q 023725 110 NSLKADYDNLFKEKEKLKAEV 130 (278)
Q Consensus 110 ~~Lk~~~~~l~~ene~L~~E~ 130 (278)
+.|-...+.|+.||-.|+.|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 333333444444444444443
No 139
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.12 E-value=55 Score=25.42 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=19.3
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 108 SYNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 108 ~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
.+..|+...+.|..|+++|+.++..|..+|
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667777777766665555
No 140
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.02 E-value=1.5e+02 Score=22.53 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKT 95 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K~ 95 (278)
.+++.+..+|...|-.. ..-.++|..+|++...|+.+...-|.+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 37777877777765322 245789999999999999987655554443
No 141
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=34.68 E-value=54 Score=22.67 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=21.6
Q ss_pred hhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 106 QNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 106 ~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+.....|......|..+|..|+.++..|+..+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777777765543
No 142
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=34.57 E-value=1.7e+02 Score=23.18 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=13.2
Q ss_pred HHHhCCCchhhhhHhhhh
Q 023725 72 AKDLGLQPRQVAIWFQNR 89 (278)
Q Consensus 72 A~~LgLs~rQVqvWFQNR 89 (278)
.+.+|++-..|+..+...
T Consensus 55 lr~~G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 55 MRRAGLSIEALIDYLALF 72 (142)
T ss_dssp HHHTTCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 467788888888777543
No 143
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.19 E-value=1.2e+02 Score=23.53 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=20.4
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTD 135 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~ 135 (278)
+...|+.......+....|..+.++|++|++.|..
T Consensus 52 e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 52 ENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444334445556677777777777777643
No 144
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.76 E-value=33 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999887653
No 145
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=33.70 E-value=1.2e+02 Score=24.31 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=29.4
Q ss_pred HHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 54 EKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 54 E~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
...|....| .......||+..|++..-|-..|.||-.-..
T Consensus 45 ~~lf~~~G~-~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~ 84 (221)
T 3g7r_A 45 TRIFYAEGI-HSVGIDRITAEAQVTRATLYRHFSGKDDLIL 84 (221)
T ss_dssp HHHHHHHCS-TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHhCc-ccCCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 334665553 4455778999999999999999998765443
No 146
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.69 E-value=75 Score=21.71 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 93 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~ 93 (278)
.+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4888899999888842100 112346899999999999999865443333
No 147
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.64 E-value=1.8e+02 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHhCCCchhhhhHhhhh
Q 023725 72 AKDLGLQPRQVAIWFQNR 89 (278)
Q Consensus 72 A~~LgLs~rQVqvWFQNR 89 (278)
.+.+|++-..|+..+...
T Consensus 69 lr~~G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 69 LKNTGMPIQKIKQFIDWS 86 (148)
T ss_dssp HHTTTCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHhh
Confidence 355677777777776543
No 148
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=33.37 E-value=31 Score=25.42 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHHHHHHh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQ 106 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~~~~l~ 106 (278)
..+||+.+|++...|..|..+++ .....+.+-+..|.
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~--~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN--VSLTVLLAICEYLN 76 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC--CCHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC--cCHHHHHHHHHHHC
Confidence 46789999999999999998865 24444444444443
No 149
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.33 E-value=1.3e+02 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=20.7
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 111 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 111 ~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
.|......+..+++.|+.++..|..+|.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888888877764
No 150
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.20 E-value=33 Score=23.24 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999987764
No 151
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=32.90 E-value=67 Score=23.53 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=22.7
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 109 YNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 109 ~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+..|......+..+++.|+.++..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777788888888888888877764
No 152
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=32.52 E-value=74 Score=19.20 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=15.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 023725 114 ADYDNLFKEKEKLKAEVLKLTDK 136 (278)
Q Consensus 114 ~~~~~l~~ene~L~~E~~~L~~~ 136 (278)
+-..+|.+||..|++.+.+|-.+
T Consensus 6 allasleaenkqlkakveellak 28 (31)
T 1p9i_A 6 ALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677778888777776544
No 153
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=32.26 E-value=31 Score=23.17 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999887554
No 154
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.11 E-value=1.2e+02 Score=20.63 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=15.6
Q ss_pred HhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 105 LQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 105 l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
++.....|.+.|..|......-+.++..|++.+
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444455555554443
No 155
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=32.09 E-value=24 Score=24.56 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998766
No 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.68 E-value=1.3e+02 Score=20.83 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=18.6
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 107 NSYNSLKADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 107 ~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
.....|......|..+|..|+.++..|+..+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666665543
No 157
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=31.66 E-value=23 Score=23.54 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988765
No 158
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=31.41 E-value=77 Score=20.01 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=22.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 111 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 111 ~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
++.++-..|..|++.|+.....|+.+|.
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe 31 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLE 31 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788899999999888888775
No 159
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=31.38 E-value=3.3 Score=32.78 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCCchhhhhHhhhhhhHHH-------HHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 023725 76 GLQPRQVAIWFQNRRARWK-------TKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 133 (278)
Q Consensus 76 gLs~rQVqvWFQNRRak~K-------~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L 133 (278)
||++.+|...=+-||...- ++........|......|....+.|..|+..|+.|+..+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776665444442211 111122233343334444444444444444444444433
No 160
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=31.26 E-value=76 Score=23.86 Aligned_cols=42 Identities=5% Similarity=0.117 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhh
Q 023725 43 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 89 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNR 89 (278)
..++.++...+-..+... . ...++|+.||++...|..|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHcc
Confidence 457888777666666432 2 35678999999999999998643
No 161
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.88 E-value=1.2e+02 Score=23.76 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhh
Q 023725 43 RRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQN 88 (278)
Q Consensus 43 ~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQN 88 (278)
+.++.++...+-..+... ....++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 358888776665556432 23567899999999999999864
No 162
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.87 E-value=35 Score=24.51 Aligned_cols=24 Identities=21% Similarity=0.641 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 467999999999999999877543
No 163
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.85 E-value=84 Score=24.37 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=24.0
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 133 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L 133 (278)
.+..++..++.|..+++.|..+++.|+.++.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777777777777553
No 164
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=30.83 E-value=47 Score=25.43 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 023725 117 DNLFKEKEKLKAEVLKLTDKLQVK 140 (278)
Q Consensus 117 ~~l~~ene~L~~E~~~L~~~l~~~ 140 (278)
..+..++..|+.++..|+.+|...
T Consensus 75 ~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 75 LSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhh
Confidence 345556778888888888777643
No 165
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.72 E-value=46 Score=27.23 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.+++.+..+|...|-. .....++|..||++...|+.+...=|.+.|
T Consensus 187 ~L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3777777777776632 234568899999999999988754444333
No 166
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.70 E-value=1e+02 Score=23.22 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=24.9
Q ss_pred HHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 103 DVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 103 ~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+.-+.....+......|..||..|+.++..|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666777788888888888888776665
No 167
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=30.45 E-value=44 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.++..+..+|...+. .+ .-.++|..||++...|+.+..+-+.+.+
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 489999999887543 22 2357899999999999998765554444
No 168
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.00 E-value=91 Score=22.75 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhh
Q 023725 41 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNR 89 (278)
Q Consensus 41 kR~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNR 89 (278)
....||..+..+|.-.++- ....++|..||++.+.|+....+=
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G------~s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKG------FTNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp ---CCCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3446999999999877622 236789999999999999876543
No 169
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=29.75 E-value=1.6e+02 Score=21.43 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCC--CchhhhhHhh
Q 023725 41 KKRRLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGL--QPRQVAIWFQ 87 (278)
Q Consensus 41 kR~rft~eQl~~LE~~F~~-----~~~P~~~~r~eLA~~LgL--s~rQVqvWFQ 87 (278)
+...++.+++..|...|.. +.+.+..+...+.+.+|. +..+|+.+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3446999999999999864 457999999999999985 5667777764
No 170
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=29.49 E-value=29 Score=22.84 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987665
No 171
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.02 E-value=88 Score=22.29 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.+++.+..+|...|-.... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3888888888888742100 1223567899999999999998754444333
No 172
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=29.02 E-value=81 Score=21.71 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 023725 116 YDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 116 ~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
|+.|....+.|+.|+..|+..|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444444444443
No 173
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.10 E-value=1.6e+02 Score=23.54 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=7.2
Q ss_pred HHhCCCchhhhhHhh
Q 023725 73 KDLGLQPRQVAIWFQ 87 (278)
Q Consensus 73 ~~LgLs~rQVqvWFQ 87 (278)
+.+|++-..|+..+.
T Consensus 58 r~~G~sl~~I~~~l~ 72 (146)
T 3hh0_A 58 KHLGFSLGEIQNIIL 72 (146)
T ss_dssp HHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHH
Confidence 344555555555443
No 174
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.05 E-value=2.3e+02 Score=22.53 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHhh-hcCCCCHHHHHHHHH
Q 023725 42 KRRLTVDQVQFLEKSFE-VENKLEPERKIQLAK 73 (278)
Q Consensus 42 R~rft~eQl~~LE~~F~-~~~~P~~~~r~eLA~ 73 (278)
.+.|+.+++..|...-. +.--.+..++..+..
T Consensus 52 ~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 52 DRIFNEEALKYLEMILCLKNTGMPIQKIKQFID 84 (148)
T ss_dssp CEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45599999998876632 334455555555544
No 175
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.85 E-value=1.7e+02 Score=20.99 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh-CCCchhhhh
Q 023725 42 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDL-GLQPRQVAI 84 (278)
Q Consensus 42 R~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~L-gLs~rQVqv 84 (278)
+...|.++-..|+.....-..-.+..=..||+.+ |=+..||+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~ 61 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIA 61 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHH
Confidence 4459999999999888776655566677788888 456666654
No 176
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.64 E-value=95 Score=19.45 Aligned_cols=24 Identities=8% Similarity=-0.011 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 115 DYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 115 ~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
..+.|..+|..|..|+.+|++-+.
T Consensus 8 KVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345678889999999999987553
No 177
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.52 E-value=1.5e+02 Score=20.18 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHH
Q 023725 99 EKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKL 133 (278)
Q Consensus 99 ~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L 133 (278)
......|.+.+..|...-.....+...|+.++.+|
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555566666666666666666666655
No 178
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=27.18 E-value=42 Score=22.35 Aligned_cols=23 Identities=26% Similarity=0.082 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46799999999999999987764
No 179
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.15 E-value=2.3e+02 Score=22.38 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHH
Q 023725 42 KRRLTVDQVQFLEKSF-EVENKLEPERKIQLAK 73 (278)
Q Consensus 42 R~rft~eQl~~LE~~F-~~~~~P~~~~r~eLA~ 73 (278)
.+.|+.+++..|...- -+.--.+..++.++..
T Consensus 38 ~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 38 VRKFGAEDLRWILFTRQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp CBCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4569999999887762 2334455566655544
No 180
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.07 E-value=47 Score=22.72 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999987764
No 181
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=26.95 E-value=20 Score=28.85 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCchhhhhHhhhhh
Q 023725 67 RKIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 67 ~r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
-+..+|+.+|+++.+++.|.-..|
T Consensus 71 ~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 71 FVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHhCCCcccEEEEEeecC
Confidence 357789999999999999985444
No 182
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.27 E-value=1.7e+02 Score=20.36 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=12.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 023725 109 YNSLKADYDNLFKEKEKLKAEVLKLTD 135 (278)
Q Consensus 109 ~~~Lk~~~~~l~~ene~L~~E~~~L~~ 135 (278)
...|......|..+|..|+.++..|+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 183
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=26.22 E-value=73 Score=22.66 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCchhhhhHhh
Q 023725 45 LTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 87 (278)
Q Consensus 45 ft~eQl~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs~rQVqvWFQ 87 (278)
++.++...+...|.. ..+.+..+...+.+.+|++...++.+|.
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 678888899999874 3467888888888888988877766653
No 184
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=25.53 E-value=44 Score=23.20 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 185
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=24.80 E-value=47 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHHhCCCchhhhhHhhh
Q 023725 69 IQLAKDLGLQPRQVAIWFQN 88 (278)
Q Consensus 69 ~eLA~~LgLs~rQVqvWFQN 88 (278)
.+||+.+|++...|..|..+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 18 SELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45677777777777777766
No 186
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.76 E-value=1.2e+02 Score=23.52 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=11.8
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHH
Q 023725 109 YNSLKADYDNLFKEKEKLKAEVL 131 (278)
Q Consensus 109 ~~~Lk~~~~~l~~ene~L~~E~~ 131 (278)
+..|....+.|..||..|+.|+.
T Consensus 67 v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 67 VRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555543
No 187
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.74 E-value=49 Score=21.54 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=20.5
Q ss_pred HHHHHHhCCCchhhhhHhhhhhhHHH
Q 023725 69 IQLAKDLGLQPRQVAIWFQNRRARWK 94 (278)
Q Consensus 69 ~eLA~~LgLs~rQVqvWFQNRRak~K 94 (278)
.++|..||+++..|+.+..+-+.+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 58999999999999998765444443
No 188
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=24.58 E-value=38 Score=21.80 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhh
Q 023725 47 VDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQ 87 (278)
Q Consensus 47 ~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQ 87 (278)
.++...+...+.. .. ...++|+.+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555544444432 22 456899999999999999874
No 189
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.21 E-value=71 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999998765
No 190
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=24.07 E-value=36 Score=23.58 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 191
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.88 E-value=46 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCchhhhhHhhhhh
Q 023725 67 RKIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 67 ~r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
...+||..+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 456899999999999999998765
No 192
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.87 E-value=84 Score=24.82 Aligned_cols=44 Identities=11% Similarity=-0.125 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhhHH
Q 023725 45 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARW 93 (278)
Q Consensus 45 ft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRak~ 93 (278)
++..+..+|...|-.. ..-.++|..||+++..|+.+...-|.+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6677777776655322 2346899999999999999876444433
No 193
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.84 E-value=1.2e+02 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 023725 114 ADYDNLFKEKEKLKAEVLKLTDKL 137 (278)
Q Consensus 114 ~~~~~l~~ene~L~~E~~~L~~~l 137 (278)
..+.+..++.+.|+.++..|..++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 334455555666666666555443
No 194
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.79 E-value=2.1e+02 Score=22.92 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=29.9
Q ss_pred CCCchhhhhHhhhhhhHHHHHHHHHH-------HHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023725 76 GLQPRQVAIWFQNRRARWKTKQLEKD-------YDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDK 136 (278)
Q Consensus 76 gLs~rQVqvWFQNRRak~K~k~~~k~-------~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~ 136 (278)
+|.....+.|-+|+-...-+..++++ .+.|+..+..|...-....++.++|+.++..|.-.
T Consensus 40 ~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 40 GFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 45556677777777654443333333 23333334444444444444555555555444433
No 195
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=23.63 E-value=43 Score=28.01 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCchhhhhHhhhhh
Q 023725 67 RKIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 67 ~r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
...+||+.+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 456899999999999999997754
No 196
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.47 E-value=1.4e+02 Score=18.78 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 115 DYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 115 ~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
-.+.|..++..|..|+.+|++-|-
T Consensus 9 KvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 9 KLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhc
Confidence 345678889999999999987654
No 197
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=22.95 E-value=41 Score=23.05 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
..+||+.+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 198
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.78 E-value=1.5e+02 Score=25.34 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
-.++++..++.+...+..|..+|.+|+.++.+|+....
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888999999999999999999999987655
No 199
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.71 E-value=2.5e+02 Score=22.40 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 023725 121 KEKEKLKAEVLKLTDKLQVKE 141 (278)
Q Consensus 121 ~ene~L~~E~~~L~~~l~~~~ 141 (278)
...+.|+.|+..|+.+|+...
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777554
No 200
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=22.71 E-value=2.5e+02 Score=21.09 Aligned_cols=46 Identities=28% Similarity=0.426 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 023725 98 LEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQVKEKE 143 (278)
Q Consensus 98 ~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~~~~~~ 143 (278)
++.+|-..-..|+.|....+.|.+||..|---+.+|=.++...++.
T Consensus 31 lr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~~~ 76 (97)
T 1no4_A 31 LRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQ 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccchhh
Confidence 3455666666777777777777777777777776666666554443
No 201
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=22.68 E-value=98 Score=21.59 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCchhhhhHhhhhhhHHHHHHHHHHHHHHh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQ 106 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRRak~K~k~~~k~~~~l~ 106 (278)
..+||..+|++...|..|..+++. .......+-...+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~~-~~~~~l~~ia~~l~ 70 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGINA-LNAYNAALLAKILK 70 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC-CCHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC-CCHHHHHHHHHHHC
Confidence 467999999999999999987653 22233444444443
No 202
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.52 E-value=66 Score=24.55 Aligned_cols=40 Identities=8% Similarity=0.092 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhh
Q 023725 45 LTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 45 ft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
++.+++..|..... . ...+||..+|++...|..|-.+++.
T Consensus 71 ~~~~~l~~~R~~~g----l---sq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcC----C---CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 45555555544332 1 2357889999999999999887654
No 203
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=22.51 E-value=1.7e+02 Score=21.17 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhh
Q 023725 42 KRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 42 R~rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
.+.++.++...+-..+..... ..++|+.+|++...|..|+..-+.
T Consensus 15 ~~~~s~~~r~~i~~~~~~g~s-----~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMAADGIR-----PCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TSCCCHHHHHHHHHHHHTTCC-----HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHcCCC-----HHHHHHHHCcCHHHHHHHHHHHHh
No 204
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=22.42 E-value=65 Score=22.60 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCchhhhhHhh
Q 023725 44 RLTVDQVQFLEKSFEV-----ENKLEPERKIQLAKDLGLQPRQVAIWFQ 87 (278)
Q Consensus 44 rft~eQl~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs~rQVqvWFQ 87 (278)
.++.++...|...|.. +.+.+..+...+...+|++..+|+.+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4888889999999864 4468888888888999998888887774
No 205
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=22.05 E-value=47 Score=22.82 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHH
Q 023725 93 WKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAE 129 (278)
Q Consensus 93 ~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E 129 (278)
+....-..+...+...+..|..++..|..++.+|+.+
T Consensus 20 Y~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 20 YDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444455555555555666666666666655543
No 206
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.56 E-value=1.4e+02 Score=22.11 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=17.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 111 SLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 111 ~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
.|......+..+++.|+.++..|+.+|.
T Consensus 56 ~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 56 SVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666667777766666654
No 207
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.47 E-value=2.9e+02 Score=21.47 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=11.7
Q ss_pred HHHhCCCchhhhhHhhh
Q 023725 72 AKDLGLQPRQVAIWFQN 88 (278)
Q Consensus 72 A~~LgLs~rQVqvWFQN 88 (278)
.+.+|++..+|+.++..
T Consensus 53 lr~~G~sl~eI~~~l~~ 69 (135)
T 1q06_A 53 ARQVGFNLEESGELVNL 69 (135)
T ss_dssp HHHTTCCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHh
Confidence 46677777777777654
No 208
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.06 E-value=3e+02 Score=21.48 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023725 92 RWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQV 139 (278)
Q Consensus 92 k~K~k~~~k~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~~ 139 (278)
..++..++....-+.......-..+..|..++.+|..++..|+..+..
T Consensus 75 ~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 75 IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666677777777777888888888888888888877764
No 209
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=20.88 E-value=2.4e+02 Score=21.77 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhh
Q 023725 51 QFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 51 ~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
...+..|......+......+|.++||...++.-.+.....
T Consensus 86 ~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~ 126 (175)
T 3gyk_A 86 AFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEV 126 (175)
T ss_dssp HHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHH
Confidence 34566687777788999999999999999888877765443
No 210
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=20.78 E-value=1.4e+02 Score=21.04 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhhhhHhhhhh
Q 023725 68 KIQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 68 r~eLA~~LgLs~rQVqvWFQNRR 90 (278)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 211
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.35 E-value=3.1e+02 Score=23.40 Aligned_cols=19 Identities=11% Similarity=0.302 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhhhhhH
Q 023725 94 KTKQLEKDYDVLQNSYNSL 112 (278)
Q Consensus 94 K~k~~~k~~~~l~~~~~~L 112 (278)
+..++..+.+.++..+...
T Consensus 64 ~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 64 DNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 212
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=20.35 E-value=73 Score=23.48 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=12.5
Q ss_pred HHHHHHhCCCchhhhhHhhhhh
Q 023725 69 IQLAKDLGLQPRQVAIWFQNRR 90 (278)
Q Consensus 69 ~eLA~~LgLs~rQVqvWFQNRR 90 (278)
.+||..+|++...|..|-.+++
T Consensus 26 ~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 26 HQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 3456666666666666655543
No 213
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.09 E-value=2.8e+02 Score=25.74 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=16.7
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 107 NSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 107 ~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
+..+........+.+++++++.++.++..++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 33334444445555566666666555554444
No 214
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.07 E-value=55 Score=22.51 Aligned_cols=41 Identities=7% Similarity=0.085 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCchhhhhHhhhhhh
Q 023725 44 RLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRA 91 (278)
Q Consensus 44 rft~eQl~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rQVqvWFQNRRa 91 (278)
.++.+.+..+..... . ...+||..+|++...|..|-++++.
T Consensus 10 ~~~g~~lr~~R~~~g----l---tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcC----C---CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 478888887766543 2 2468999999999999999987653
No 215
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.06 E-value=3.2e+02 Score=21.46 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=22.3
Q ss_pred HHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 023725 101 DYDVLQNSYNSLKADYDNLFKEKEKLKAEVLKLTDKLQ 138 (278)
Q Consensus 101 ~~~~l~~~~~~Lk~~~~~l~~ene~L~~E~~~L~~~l~ 138 (278)
....|++..+-.+.+|.+-+..-+++..+..+|..++.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~ 100 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLE 100 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHH
Confidence 34566677666666666655555555555555554443
No 216
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=20.04 E-value=2.1 Score=35.24 Aligned_cols=29 Identities=0% Similarity=-0.104 Sum_probs=21.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCH
Q 023725 37 HQPEKKRRLTVDQVQFLEKSFEVENKLEP 65 (278)
Q Consensus 37 ~~~rkR~rft~eQl~~LE~~F~~~~~P~~ 65 (278)
..+|.|+.|+..|++.|+..|+.+++|..
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 34566667999999999999999999874
Done!