Query 023726
Match_columns 278
No_of_seqs 236 out of 1057
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.7 0.056 1.9E-06 49.9 15.8 79 75-161 230-308 (332)
2 2l8s_A Integrin alpha-1; trans 30.3 94 0.0032 21.0 4.7 26 71-96 8-33 (54)
3 2knc_A Integrin alpha-IIB; tra 28.4 1.1E+02 0.0039 20.5 4.9 27 70-96 10-36 (54)
4 3zux_A Transporter, ASBTNM; tr 24.4 3.8E+02 0.013 23.9 13.0 64 50-114 47-114 (332)
5 2k1a_A Integrin alpha-IIB; sin 21.7 1.6E+02 0.0055 18.7 4.4 26 71-96 9-34 (42)
6 2kxa_A Haemagglutinin HA2 chai 17.2 47 0.0016 19.6 1.0 10 267-276 3-12 (30)
7 1waz_A MERF; protein structure 11.4 85 0.0029 20.5 1.1 26 18-58 6-31 (46)
8 2k1k_A Ephrin type-A receptor 10.8 3.1E+02 0.011 16.8 3.6 21 8-28 15-35 (38)
9 1v54_G Cytochrome C oxidase po 8.8 1.9E+02 0.0064 21.2 2.3 21 40-60 13-33 (85)
10 4ev6_A Magnesium transport pro 8.2 2.7E+02 0.0092 24.7 3.6 24 39-63 278-301 (339)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.69 E-value=0.056 Score=49.93 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHH
Q 023726 75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMA 154 (278)
Q Consensus 75 ~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~ 154 (278)
+.+..++..++++.+||.++|.+|.+++++......|+..|++ +++++.... ||++....--...|....+.
T Consensus 230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~-lai~lA~~~-------F~~~p~~alp~~iy~~~q~i 301 (332)
T 3zux_A 230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSG-LAAALAAAH-------FAAAPVVAVPGALFSVWHNI 301 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHH-HHHHHHHHH-------STTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHH-HHHHHHHHH-------cCCCchHHHHHHHHHHHHHH
Confidence 3344567778899999999999999999999988889999994 999998877 65322222233445555555
Q ss_pred HhhHHHH
Q 023726 155 LGGFFIW 161 (278)
Q Consensus 155 v~~il~w 161 (278)
.+.++.+
T Consensus 302 ~~~~la~ 308 (332)
T 3zux_A 302 SGSLLAT 308 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=30.27 E-value=94 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023726 71 SWWFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 71 ~~w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
.||.+.+.++...++-.++.+++.|.
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36777777777766666666666664
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.36 E-value=1.1e+02 Score=20.53 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023726 70 ISWWFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 70 ~~~w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
..||.+.+.++...++-.++.+++.|.
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777777777777666666666664
No 4
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=24.39 E-value=3.8e+02 Score=23.89 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=37.9
Q ss_pred HHhHHHHHHHhcccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccC
Q 023726 50 VFTPSLMFASLAKTVTLEEII----SWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASG 114 (278)
Q Consensus 50 VflP~LIFs~la~~vt~~~l~----~~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fg 114 (278)
..+..++|..-. +++.+++. +++......+..+++.=+++|.+.+.+..++......+..++.+
T Consensus 47 ~~l~~~mf~~G~-~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P 114 (332)
T 3zux_A 47 WLLGIIMFGMGL-TLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCP 114 (332)
T ss_dssp HHHHHHHHHHHH-HCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCC
Confidence 455555554443 34555654 44444455566777888899999998877666443333333333
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.73 E-value=1.6e+02 Score=18.71 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023726 71 SWWFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 71 ~~w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
.+|.+.+.++...++-.++.+++.|.
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777777666666666666666664
No 6
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=17.18 E-value=47 Score=19.63 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=8.4
Q ss_pred HHHHHHHhhc
Q 023726 267 LAAVSFFSLT 276 (278)
Q Consensus 267 i~~i~g~~iG 276 (278)
-|||.|||.|
T Consensus 3 FGAIAGfieg 12 (30)
T 2kxa_A 3 FGAIAGFIEG 12 (30)
T ss_dssp HHHHHHHHHH
T ss_pred chhhhhhhhc
Confidence 5899999976
No 7
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=11.43 E-value=85 Score=20.46 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHH
Q 023726 18 LLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFA 58 (278)
Q Consensus 18 flii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs 58 (278)
.++.++|.- + -.|++| |+.+|+|.|.
T Consensus 6 iL~g~vGLs-a--~vgyLD------------yVLlPaLa~F 31 (46)
T 1waz_A 6 ILLGVVGLS-A--LTGYLD------------YVLLPALAIF 31 (46)
T ss_dssp HHHHHHHHH-H--CCSCCC------------CCSCCHHHHH
T ss_pred hhHHHhhHH-H--HHHHHH------------HHHHHHHHHH
Confidence 345666643 3 588888 5778887653
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.80 E-value=3.1e+02 Score=16.79 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023726 8 EVASMPIVQVLLISVLGALMA 28 (278)
Q Consensus 8 ~~a~~~vl~Vflii~vG~~la 28 (278)
-.....+.-+.++.++++++.
T Consensus 15 GiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHe
Confidence 345556677788888888887
No 9
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=8.78 E-value=1.9e+02 Score=21.22 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHh
Q 023726 40 RRSLNKMVFTVFTPSLMFASL 60 (278)
Q Consensus 40 ~k~Lsklvf~VflP~LIFs~l 60 (278)
.+.=-++.+++++||++...+
T Consensus 13 ~~~Wkkis~~va~P~v~l~~~ 33 (85)
T 1v54_G 13 ARTWRFLTFGLALPSVALCTL 33 (85)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556777888888776654
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.24 E-value=2.7e+02 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhccc
Q 023726 39 ARRSLNKMVFTVFTPSLMFASLAKT 63 (278)
Q Consensus 39 ~~k~Lsklvf~VflP~LIFs~la~~ 63 (278)
..|.|+-+. .+|+|.-++++++.-
T Consensus 278 ~mk~LTiit-~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 278 IMKILTMVT-TIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHHH-HHSSHHHHHHHHTTC
T ss_pred HHHHHHHHH-HHHHHHHHHHhhccC
Confidence 344554444 488899999988763
Done!