BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023728
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 322 bits (824), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/235 (71%), Positives = 189/235 (80%), Gaps = 4/235 (1%)
Query: 1 MSFVFRGSRADLETGFPG-FIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSS 59
MSFVFRGSR DLE+GF G F+PERR +R+H RPVNSNSLAFLVTVLLLFMILNSHQM
Sbjct: 1 MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
Query: 60 NFLLWIVLGIFLLATSLRMYATC-QQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRG 118
NFLLW+VLG+FL+AT+LRMYATC Q A ASGL HTELRL +PP+IA A+RG
Sbjct: 61 NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120
Query: 119 RLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGA 178
RLQGLRLQLALLDREFD+LDYETLRALD+DNV T SMSEEEIN LPVHKYKV ++G
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVST-TSMSEEEINALPVHKYKVLDPENGC 179
Query: 179 SSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQL 233
S + S+SS AEK L+ S + TEDELTC+VCLEQV VGEIVR+LPCLHQ
Sbjct: 180 SLAKQASTSSSAEKMLD-SANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQF 233
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 23/112 (20%)
Query: 139 YETLRALDA--DNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLET 196
YE L L+ NV A + E T P HKYK Q G G S EK
Sbjct: 239 YEELLQLEDRLGNVTRGAVQNTIERFTFP-HKYKKRRPQDGKGKKDEGEESDTDEK---- 293
Query: 197 SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLH--QLFCSSMQIALTHGC 246
CT+CL + GE VR LPC+H C +A++ C
Sbjct: 294 --------------CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKC 331
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 23/112 (20%)
Query: 139 YETLRALDA--DNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLET 196
YE L L+ NV A + E T P HKYK Q G S EK
Sbjct: 240 YEELLQLEDRLGNVTRGAVQNTIERFTFP-HKYKKRRPQDSKGKKDEGEESDTDEK---- 294
Query: 197 SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLH--QLFCSSMQIALTHGC 246
CT+CL + GE VR LPC+H C +A++ C
Sbjct: 295 --------------CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKC 332
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 182 QLGSSSSPAEKKLET-SISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239
+LG ++ A KL T ++ G+ +T+ + C VC+E ++VR LPC H S +
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVD 292
Query: 240 IALTHGC 246
L+ C
Sbjct: 293 PWLSEHC 299
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 182 QLGSSSSPAEKKLET-SISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239
+LG ++ A KL T ++ G+ +T+ + C VC+E ++VR LPC H S +
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVD 292
Query: 240 IALTHGC 246
L+ C
Sbjct: 293 PWLSEHC 299
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 182 QLGSSSSPAEKKLET-SISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239
+LG ++ A KL T ++ G+ +T+ + C VC+E ++VR LPC H S +
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVD 292
Query: 240 IALTHGC 246
L+ C
Sbjct: 293 PWLSEHC 299
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 182 QLGSSSSPAEKKLET-SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLH 231
+LG ++ A KL+ +I G+ +TE + C VC+E ++VR LPC H
Sbjct: 246 RLGDAAKKAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRH 297
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 209 LTCTVCLEQVNVGEIVRSLPCLHQLF 234
++C+VCL+ VGE VRSLP H +F
Sbjct: 174 VSCSVCLQDFQVGETVRSLPHCHHMF 199
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 182 QLGSSSSPAEKKLET-SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLH 231
+LG ++ A KL+ +I G+ +TE + C VC+E ++VR LPC H
Sbjct: 247 RLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRH 298
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 184 GSSSSPAEKKLETSISVGNLKT---EDELTCTVCLEQVNVGEIVRSLPCLHQLF 234
G + EK + +I+ GN T E+ +C+VCL+ +GE VRSLP H +F
Sbjct: 167 GLTGDLVEKIPKMTIT-GNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMF 219
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 182 QLGSSSSPAEKKLET-SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLH 231
+LG ++ A +L+ +I G+ +TE + C VC+E ++VR LPC H
Sbjct: 236 RLGDAAKKAISQLQVRTIRKGDQETESDFDNCAVCIEGYKPNDVVRILPCRH 287
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 189 PAEKKLETS---ISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQLFCSS 237
PA KK+ S ++V + + L C VCL + GE VR LPC H LF SS
Sbjct: 54 PAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEH-LFHSS 104
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 166 VHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVR 225
+ ++ +GSQ G+ S + + + L T D C VC+E V +I+R
Sbjct: 224 IQRFLYTGSQIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIR 283
Query: 226 SLPCLH 231
LPC H
Sbjct: 284 ILPCKH 289
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 189 PAEKKLETS---ISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLH 231
PA KK+ S ++V + + L C VCL + GE VR LPC H
Sbjct: 54 PASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEH 99
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 198 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243
+ V K DE C +CLE+ G+ +R LPC H C + LT
Sbjct: 226 LPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLT 272
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 189 PAEKKLETS---ISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLH 231
PA+K+ TS ++V + L C VC E V E VR LPC H
Sbjct: 204 PADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNH 249
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 198 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243
+ V K DE C +CLE+ G+ +R LPC H C + LT
Sbjct: 226 LPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLT 272
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 209 LTCTVCLEQVNVGEIVRSLPCLH 231
L C VC E VGE VR LPC H
Sbjct: 226 LECPVCKEDYTVGECVRQLPCNH 248
>sp|Q8PS92|DTDA_METMA D-tyrosyl-tRNA(Tyr) deacylase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=dtdA PE=3 SV=1
Length = 297
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 30/162 (18%)
Query: 94 VASGLLGHTELR-LQMPPAIAF-ASRGRLQGLRLQLALLDREF-----DELDYETLRALD 146
+ + LL TE + L++PP F A+R + G + L+D E D LD R L+
Sbjct: 28 IKNHLLNLTEWKNLELPPESRFSAARESIDG---KFRLVDIEEIHVFQDGLD----RKLE 80
Query: 147 ADNVPTA------ASMSEEEINTLPVHKYKVSGSQSGASSM-----QLGSSSSPAEKKLE 195
A +P + S+EEIN+L VH +G+ SG + + +L SS A K +
Sbjct: 81 AAGLPASLIIFASKHRSKEEINSLTVH---CTGNPSGEARLGGHPKELAVSSPAAMKSIL 137
Query: 196 TSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQLFCSS 237
+ + L E EL V LE + G S+P ++ S+
Sbjct: 138 SGMK--KLAGEKELKYDVTLEVTHHGPTELSVPSIYAEIGST 177
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 210 TCTVCLEQVNVGEIVRSLPCLHQLF 234
+C+VCL+ +GE VRSLP H +F
Sbjct: 190 SCSVCLQDFQLGETVRSLPHCHHMF 214
>sp|D2HNY3|FAN1_AILME Fanconi-associated nuclease 1 OS=Ailuropoda melanoleuca GN=FAN1
PE=3 SV=2
Length = 1025
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 135 DELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKK- 193
D L++ET+ +D +V + S EE+ + K S A SS+P + K
Sbjct: 282 DSLEWETITGIDGKDVEKCEAGSCEEVKVTVASEAKTQLSDWEAKC----HSSTPDDSKG 337
Query: 194 --LETSISVGNLKTEDELTCTVCLEQ---VNVGEIVRSLPCLHQLFCSSMQIALTHGCGN 248
++ + G+ ++E+TC + LEQ +V + ++P H + S + L N
Sbjct: 338 CNIQDLLLEGDSDLKNEITCRIPLEQGSSCDVPDKTVTVPPSHPYYLRSFLVVLKAVFEN 397
Query: 249 RE-RAQFANSEQDPV 262
E R F E++ V
Sbjct: 398 EEDRMLFDEHEKEIV 412
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 189 PAEKKLETS---ISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLH 231
PA+K+ TS ++V + + L C VC E V E VR LPC H
Sbjct: 203 PADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNH 248
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 209 LTCTVCLEQVNVGEIVRSLPCLH 231
L C VC E VGE VR LPC H
Sbjct: 226 LECPVCKEDYTVGESVRQLPCNH 248
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 209 LTCTVCLEQVNVGEIVRSLPCLH 231
L C VC E VGE VR LPC H
Sbjct: 225 LECPVCKEDYTVGESVRQLPCNH 247
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 157 SEEEINTLPVHKYKVSGSQSGASSMQLG-----SSSSPAEKKLETSISVGNLKTEDELTC 211
S+ +I+ +P ++ +G+ S G + SP E+ L + ++ C
Sbjct: 289 SKNDIDQMPKFRFTKTGNVEKLSGKARGIMTECGTDSPIERSL----------SPEDAEC 338
Query: 212 TVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239
+CL + G +R LPC H C+ +
Sbjct: 339 CICLCEYEDGVELRELPCNHHFHCTCID 366
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 211 CTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHGC 246
C+VC+ G +R LPCLH+ + L+ C
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENC 649
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 198 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243
+ V K DE C +CL++ G+ +R LPC H C + LT
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 166 VHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVR 225
+ ++ +GSQ G+ + + + + L T D C VC+E V +++R
Sbjct: 220 IQRFLYTGSQFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIR 279
Query: 226 SLPCLH 231
LPC H
Sbjct: 280 ILPCKH 285
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%)
Query: 157 SEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLE 216
S+E+I L K++ G + ++ + ++ + T + + +++ C +CL
Sbjct: 299 SKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLS 358
Query: 217 QVNVGEIVRSLPCLHQLFCSSMQ 239
G +R LPC H CS +
Sbjct: 359 AYEDGTELRELPCGHHFHCSCVD 381
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 211 CTVCLEQVNVGEIVRSLP-CLH 231
CT+CL+ + GEI RSLP C H
Sbjct: 176 CTICLQDIKTGEITRSLPKCDH 197
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 198 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243
+ V K DE C +CL++ G+ +R LPC H C + LT
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 198 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243
+ V K DE C +CL++ G+ +R LPC H C + LT
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 206 EDELTCTVCLEQVNVGEIVRSLPCLHQL 233
+D C +CLE+ ++G VR LPC H
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNF 257
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 937 CTICLSILEEGEDVRRLPCMH 957
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 902 CTICLSILEEGEDVRRLPCMH 922
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 198 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243
+ V K DE C +CL++ G+ +R LPC H C + LT
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT 272
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 942 CTICLSILEEGEDVRRLPCMH 962
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 915 CTICLSILEEGEDVRRLPCMH 935
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 907 CTICLSILEEGEDVRRLPCMH 927
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 934 CTICLSILEEGEDVRRLPCMH 954
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 211 CTVCLEQVNVGEIVRSLPCLH 231
CT+CL + GE VR LPC+H
Sbjct: 871 CTICLSILEEGEDVRRLPCMH 891
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 197 SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQ 232
++S N D L TC+VC+ + G +R LPC H+
Sbjct: 553 NLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHE 589
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 197 SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQ 232
++S N D L TC+VC+ + G +R LPC H+
Sbjct: 570 NLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHE 606
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 12/72 (16%)
Query: 166 VHKYKVSGSQSGASSMQLGSSSSPAE------KKLETSISVGNLKTEDELTCTVCLEQVN 219
+ ++ +G+Q G S + + + ++ KK E I + D C VC+E
Sbjct: 219 IQRFLYTGAQCGNQSNRKETKKAISQLQLHRVKKGEKGIDI------DAENCAVCIENYK 272
Query: 220 VGEIVRSLPCLH 231
++VR LPC H
Sbjct: 273 TKDLVRILPCKH 284
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 197 SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQ--LFCSSMQIALTHGC------- 246
++S N D L TC+VC+ + G +R LPC H+ + C ++ C
Sbjct: 688 NLSTRNYGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAV 747
Query: 247 ---GNRE 250
GNRE
Sbjct: 748 LVAGNRE 754
>sp|Q8TCY5|MRAP_HUMAN Melanocortin-2 receptor accessory protein OS=Homo sapiens GN=MRAP
PE=1 SV=2
Length = 172
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 164 LPVHKYKVSGSQSGASSMQLGSSSSPAE---KKLETSISVGNLKTEDELTCTVCLEQVNV 220
LP H+ ++ SQ+ ASS++ GS + P + ++ +++ +G +T L + L N
Sbjct: 94 LPCHREPLATSQAQASSVEPGSRTGPDQPLRQESSSTLPLGGFQTHPTLLWELTL---NG 150
Query: 221 GEIVRSLP 228
G +VRS P
Sbjct: 151 GPLVRSKP 158
>sp|Q9R1W3|RN103_MOUSE E3 ubiquitin-protein ligase RNF103 OS=Mus musculus GN=Rnf103 PE=2
SV=2
Length = 683
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 23/121 (19%)
Query: 146 DADNVPTAAS---MSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGN 202
D+DN+ T +S + E++ + + + S + A S SSP E+K S G+
Sbjct: 539 DSDNMDTFSSSKDIFEDKQSVVHSSPGRTSHCDTEACSCANKCESSPCERKRR---SYGS 595
Query: 203 LKTEDELT---------------CTVCLEQVNVGEIVRSLPCLHQLF--CSSMQIALTHG 245
T++++ C VCLE G ++ LPC H C M +A
Sbjct: 596 HNTDEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRH 655
Query: 246 C 246
C
Sbjct: 656 C 656
>sp|Q9EPZ8|RN103_RAT E3 ubiquitin-protein ligase RNF103 OS=Rattus norvegicus GN=Rnf103
PE=2 SV=1
Length = 682
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 146 DADNVPTAASMSEEEINTLPVHKY--KVSGSQSGASSMQLGSSSSPAEKKLETSISVGNL 203
D+DN T +S + + VH + S + A S SSP E+K S N
Sbjct: 539 DSDNTDTFSSSKDVFEDKQNVHSSPGRTSRCDTEACSCANKCVSSPCERK-RRSYGSHNT 597
Query: 204 KTE---DELT----------CTVCLEQVNVGEIVRSLPCLHQLF--CSSMQIALTHGC 246
K + D LT C VCLE G ++ LPC H C M +A C
Sbjct: 598 KEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHC 655
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 205 TEDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245
+ D L C +CLEQ+ V ++LPCLH +C L G
Sbjct: 15 SSDFLACKICLEQLRV---PKTLPCLH-TYCQDCLAQLAEG 51
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 210 TCTVCLEQVNVGEIVRSLPCLHQL 233
TC+VC+ + G +R LPC H+
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEY 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,490,001
Number of Sequences: 539616
Number of extensions: 3576535
Number of successful extensions: 10442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 10381
Number of HSP's gapped (non-prelim): 88
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)