Query 023728
Match_columns 278
No_of_seqs 211 out of 1622
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 11:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.5 1.8E-14 6.3E-19 110.9 6.5 66 151-245 12-77 (91)
2 1x4j_A Ring finger protein 38; 99.4 1.2E-13 4.1E-18 102.0 2.2 40 206-245 21-60 (75)
3 2ect_A Ring finger protein 126 99.3 1.1E-12 3.9E-17 97.1 5.4 60 206-265 13-75 (78)
4 1v87_A Deltex protein 2; ring- 99.2 1.1E-11 3.9E-16 98.0 5.1 56 207-263 24-102 (114)
5 1iym_A EL5; ring-H2 finger, ub 99.2 7.5E-12 2.6E-16 86.6 3.0 40 206-245 3-43 (55)
6 2ep4_A Ring finger protein 24; 99.2 1.5E-11 5.1E-16 90.2 4.5 40 206-245 13-52 (74)
7 2kiz_A E3 ubiquitin-protein li 99.2 2.2E-11 7.7E-16 88.0 4.7 40 206-245 12-51 (69)
8 2ecl_A Ring-box protein 2; RNF 99.1 7.9E-11 2.7E-15 88.8 3.7 40 206-245 13-64 (81)
9 2ecm_A Ring finger and CHY zin 99.0 1.3E-10 4.4E-15 80.1 3.1 40 206-245 3-43 (55)
10 2d8s_A Cellular modulator of i 99.0 4.7E-10 1.6E-14 85.2 5.3 39 206-245 13-56 (80)
11 2ea6_A Ring finger protein 4; 99.0 3.6E-10 1.2E-14 80.9 3.9 40 206-245 13-56 (69)
12 3ng2_A RNF4, snurf, ring finge 98.9 4E-10 1.4E-14 81.4 3.0 40 206-245 8-51 (71)
13 3dpl_R Ring-box protein 1; ubi 98.9 5.1E-10 1.7E-14 89.3 3.5 40 206-245 35-89 (106)
14 2ct2_A Tripartite motif protei 98.9 1.7E-09 5.7E-14 81.1 4.7 40 206-245 13-53 (88)
15 2xeu_A Ring finger protein 4; 98.8 8.7E-10 3E-14 77.8 2.4 39 207-245 2-44 (64)
16 1chc_A Equine herpes virus-1 r 98.8 3E-09 1E-13 76.4 3.2 38 206-245 3-40 (68)
17 2ecn_A Ring finger protein 141 98.8 2.2E-09 7.5E-14 77.7 2.5 39 206-248 13-51 (70)
18 4a0k_B E3 ubiquitin-protein li 98.7 1.5E-09 5.2E-14 88.2 0.3 40 206-245 46-100 (117)
19 2ecj_A Tripartite motif-contai 98.7 1.1E-08 3.7E-13 70.9 4.4 36 206-244 13-48 (58)
20 2ct0_A Non-SMC element 1 homol 98.7 1.2E-08 4.1E-13 76.6 4.9 51 206-258 13-68 (74)
21 2ysj_A Tripartite motif-contai 98.7 1.2E-08 4E-13 72.4 4.5 36 206-244 18-53 (63)
22 2d8t_A Dactylidin, ring finger 98.7 4.6E-09 1.6E-13 76.5 2.3 37 206-245 13-49 (71)
23 2djb_A Polycomb group ring fin 98.7 1.3E-08 4.3E-13 74.3 4.1 41 206-248 13-55 (72)
24 4ap4_A E3 ubiquitin ligase RNF 98.6 1.3E-08 4.5E-13 81.0 2.4 40 206-245 5-48 (133)
25 2csy_A Zinc finger protein 183 98.6 4.2E-08 1.4E-12 73.0 4.5 37 206-245 13-49 (81)
26 2yur_A Retinoblastoma-binding 98.6 3E-08 1E-12 72.8 3.4 37 206-245 13-50 (74)
27 2ysl_A Tripartite motif-contai 98.6 3.9E-08 1.3E-12 71.3 3.8 36 206-244 18-53 (73)
28 2ecy_A TNF receptor-associated 98.6 5.9E-08 2E-12 69.5 4.6 35 206-243 13-47 (66)
29 2ecw_A Tripartite motif-contai 98.5 1E-07 3.6E-12 70.3 4.5 36 206-244 17-52 (85)
30 2ecv_A Tripartite motif-contai 98.5 2.2E-07 7.4E-12 68.6 6.1 36 206-244 17-52 (85)
31 1g25_A CDK-activating kinase a 98.5 7E-08 2.4E-12 68.8 2.9 39 207-245 2-42 (65)
32 4ayc_A E3 ubiquitin-protein li 98.4 4.3E-08 1.5E-12 80.4 1.7 36 207-245 52-87 (138)
33 4ap4_A E3 ubiquitin ligase RNF 98.4 6.9E-08 2.4E-12 76.8 2.6 40 206-245 70-113 (133)
34 3lrq_A E3 ubiquitin-protein li 98.4 4.8E-08 1.6E-12 76.0 1.5 38 206-245 20-57 (100)
35 2egp_A Tripartite motif-contai 98.4 3.5E-08 1.2E-12 72.4 0.2 37 206-245 10-46 (79)
36 2y43_A E3 ubiquitin-protein li 98.4 8.6E-08 2.9E-12 73.9 1.7 38 206-245 20-57 (99)
37 2ckl_A Polycomb group ring fin 98.4 1.4E-07 4.8E-12 73.9 2.7 38 206-245 13-50 (108)
38 1t1h_A Gspef-atpub14, armadill 98.3 2.6E-07 8.8E-12 67.9 3.3 36 206-244 6-41 (78)
39 2ckl_B Ubiquitin ligase protei 98.3 3.4E-07 1.2E-11 76.8 3.3 37 206-244 52-88 (165)
40 3ztg_A E3 ubiquitin-protein li 98.2 6.4E-07 2.2E-11 67.8 3.6 36 206-244 11-47 (92)
41 3fl2_A E3 ubiquitin-protein li 98.2 3.3E-07 1.1E-11 73.4 2.0 36 206-244 50-85 (124)
42 1jm7_A BRCA1, breast cancer ty 98.2 8.4E-07 2.9E-11 69.1 3.4 36 207-245 20-55 (112)
43 1vyx_A ORF K3, K3RING; zinc-bi 98.2 8.1E-07 2.8E-11 63.7 2.7 37 206-245 4-45 (60)
44 3k1l_B Fancl; UBC, ring, RWD, 98.1 5.6E-07 1.9E-11 85.4 2.1 41 206-246 306-351 (381)
45 1e4u_A Transcriptional repress 98.1 2.4E-06 8.3E-11 64.1 5.0 46 206-251 9-59 (78)
46 3hct_A TNF receptor-associated 98.1 8E-07 2.7E-11 70.8 1.9 37 206-245 16-52 (118)
47 3l11_A E3 ubiquitin-protein li 98.1 2.6E-07 9E-12 73.0 -1.0 40 206-248 13-55 (115)
48 1wim_A KIAA0161 protein; ring 98.0 1.7E-06 5.8E-11 66.2 2.5 38 207-244 4-41 (94)
49 1bor_A Transcription factor PM 98.0 1.1E-06 3.8E-11 61.3 1.1 39 206-248 4-42 (56)
50 1z6u_A NP95-like ring finger p 98.0 1.2E-06 4.2E-11 73.2 1.3 40 206-248 76-118 (150)
51 1rmd_A RAG1; V(D)J recombinati 98.0 1.3E-06 4.5E-11 69.0 1.2 36 206-244 21-56 (116)
52 3knv_A TNF receptor-associated 98.0 2.5E-06 8.4E-11 70.7 2.6 37 206-245 29-65 (141)
53 2y1n_A E3 ubiquitin-protein li 97.9 4.7E-06 1.6E-10 80.1 4.1 39 207-248 331-372 (389)
54 1jm7_B BARD1, BRCA1-associated 97.9 1.5E-06 5.1E-11 69.1 -0.0 44 206-251 20-64 (117)
55 1wgm_A Ubiquitin conjugation f 97.8 2.4E-05 8.4E-10 60.9 5.0 37 206-245 20-57 (98)
56 2kr4_A Ubiquitin conjugation f 97.6 5.8E-05 2E-09 57.0 5.2 37 206-245 12-48 (85)
57 2yu4_A E3 SUMO-protein ligase 97.6 3.3E-05 1.1E-09 59.3 3.6 38 206-245 5-42 (94)
58 4ic3_A E3 ubiquitin-protein li 97.6 1.2E-05 4.1E-10 59.1 1.1 38 206-248 22-60 (74)
59 2kre_A Ubiquitin conjugation f 97.5 5.4E-05 1.9E-09 59.1 3.3 37 206-245 27-63 (100)
60 2vje_A E3 ubiquitin-protein li 97.5 3.5E-05 1.2E-09 55.2 2.0 39 206-245 6-45 (64)
61 3hcs_A TNF receptor-associated 97.5 3.3E-05 1.1E-09 64.8 1.9 40 206-248 16-58 (170)
62 2ecg_A Baculoviral IAP repeat- 97.4 1E-05 3.4E-10 59.5 -1.6 38 206-248 23-61 (75)
63 2c2l_A CHIP, carboxy terminus 97.3 0.00014 4.6E-09 64.4 4.1 37 206-245 206-242 (281)
64 3htk_C E3 SUMO-protein ligase 97.1 0.00038 1.3E-08 63.7 4.7 38 206-245 179-216 (267)
65 2f42_A STIP1 homology and U-bo 96.9 0.00049 1.7E-08 59.5 3.5 37 206-245 104-140 (179)
66 2vje_B MDM4 protein; proto-onc 96.8 0.00043 1.5E-08 49.3 2.0 39 206-245 5-44 (63)
67 2ea5_A Cell growth regulator w 96.7 0.0011 3.8E-08 48.0 3.5 38 206-248 13-51 (68)
68 3t6p_A Baculoviral IAP repeat- 96.7 0.00041 1.4E-08 65.4 1.3 38 206-248 293-331 (345)
69 2bay_A PRE-mRNA splicing facto 96.6 0.00078 2.7E-08 48.0 2.0 36 208-245 3-38 (61)
70 2yho_A E3 ubiquitin-protein li 96.5 0.00056 1.9E-08 50.9 0.8 38 206-248 16-54 (79)
71 3nw0_A Non-structural maintena 96.2 0.0029 9.7E-08 56.7 3.7 37 206-244 178-214 (238)
72 2jun_A Midline-1; B-BOX, TRIM, 93.7 0.029 9.8E-07 42.7 2.1 36 207-242 2-38 (101)
73 3vk6_A E3 ubiquitin-protein li 91.8 0.099 3.4E-06 41.2 2.9 37 210-248 3-42 (101)
74 1wil_A KIAA1045 protein; ring 86.8 0.55 1.9E-05 35.9 3.6 34 206-240 13-46 (89)
75 2lri_C Autoimmune regulator; Z 86.7 0.23 8E-06 35.8 1.4 37 206-245 10-46 (66)
76 1f62_A Transcription factor WS 73.9 1.1 3.9E-05 29.9 1.2 31 210-240 2-32 (51)
77 2l5u_A Chromodomain-helicase-D 73.6 1.6 5.4E-05 30.6 1.9 34 206-242 9-42 (61)
78 2yt5_A Metal-response element- 71.5 0.85 2.9E-05 32.1 0.1 35 206-240 4-40 (66)
79 1we9_A PHD finger family prote 71.4 1.5 5.2E-05 30.6 1.4 34 206-239 4-38 (64)
80 2vpb_A Hpygo1, pygopus homolog 68.8 2.4 8.3E-05 30.3 2.0 33 206-238 6-40 (65)
81 1xwh_A Autoimmune regulator; P 68.8 1.4 4.7E-05 31.3 0.7 32 206-240 6-37 (66)
82 3lqh_A Histone-lysine N-methyl 68.5 1.7 5.7E-05 37.3 1.3 32 208-239 2-37 (183)
83 2yql_A PHD finger protein 21A; 68.3 1.2 4E-05 30.6 0.2 32 206-240 7-38 (56)
84 1mm2_A MI2-beta; PHD, zinc fin 66.8 1.4 4.7E-05 30.9 0.4 32 206-240 7-38 (61)
85 2l43_A N-teminal domain from h 65.3 2.8 9.7E-05 31.6 1.9 35 206-240 23-59 (88)
86 2puy_A PHD finger protein 21A; 63.9 2 6.8E-05 29.8 0.7 31 207-240 4-34 (60)
87 2dar_A PDZ and LIM domain prot 59.8 5.4 0.00018 29.2 2.5 32 206-240 23-54 (90)
88 2e6r_A Jumonji/ARID domain-con 59.6 2.2 7.5E-05 32.4 0.4 35 206-240 14-48 (92)
89 2ysm_A Myeloid/lymphoid or mix 57.5 4.3 0.00015 31.3 1.7 38 206-243 5-42 (111)
90 1fp0_A KAP-1 corepressor; PHD 56.6 3.3 0.00011 31.6 0.9 32 206-240 23-54 (88)
91 2lv9_A Histone-lysine N-methyl 56.6 4.8 0.00016 30.8 1.8 34 206-240 26-59 (98)
92 1zfo_A LAsp-1; LIM domain, zin 55.7 4.4 0.00015 24.6 1.2 28 208-237 3-30 (31)
93 3v43_A Histone acetyltransfera 53.6 7.4 0.00025 30.2 2.5 34 207-240 4-43 (112)
94 2ro1_A Transcription intermedi 51.6 3.3 0.00011 35.3 0.1 30 208-240 2-31 (189)
95 2kwj_A Zinc finger protein DPF 51.5 3.3 0.00011 32.4 0.2 33 209-241 2-41 (114)
96 1wem_A Death associated transc 51.4 13 0.00046 26.6 3.5 31 208-239 16-46 (76)
97 2dj7_A Actin-binding LIM prote 51.3 8.9 0.0003 27.6 2.5 32 206-239 13-44 (80)
98 2xb1_A Pygopus homolog 2, B-ce 50.9 7.3 0.00025 30.2 2.1 32 208-239 3-36 (105)
99 2ku3_A Bromodomain-containing 50.9 6.7 0.00023 28.4 1.7 35 206-240 14-50 (71)
100 2k16_A Transcription initiatio 49.9 5.9 0.0002 28.4 1.3 35 206-240 16-50 (75)
101 1wew_A DNA-binding family prot 48.1 15 0.00053 26.6 3.4 33 206-239 14-48 (78)
102 2ri7_A Nucleosome-remodeling f 46.1 7.5 0.00025 32.0 1.5 33 206-239 6-39 (174)
103 2lbm_A Transcriptional regulat 45.9 12 0.0004 30.8 2.7 35 206-243 61-95 (142)
104 3o36_A Transcription intermedi 44.8 4.9 0.00017 33.7 0.2 34 207-243 3-36 (184)
105 1wep_A PHF8; structural genomi 44.8 18 0.0006 26.2 3.2 32 207-239 11-43 (79)
106 3ql9_A Transcriptional regulat 44.3 12 0.0004 30.4 2.3 33 206-241 55-87 (129)
107 2co8_A NEDD9 interacting prote 43.5 11 0.00037 27.1 1.9 32 206-239 13-44 (82)
108 1jdm_A Sarcolipin; helix, memb 43.1 13 0.00044 22.8 1.8 22 35-56 9-30 (31)
109 1weu_A Inhibitor of growth fam 41.6 26 0.00089 26.6 3.8 31 207-239 35-68 (91)
110 2l9u_A Receptor tyrosine-prote 41.0 25 0.00085 22.5 3.0 9 46-54 17-25 (40)
111 2cs3_A Protein C14ORF4, MY039 40.2 28 0.00097 26.4 3.7 43 206-248 13-56 (93)
112 3o70_A PHD finger protein 13; 38.7 11 0.00038 26.9 1.2 33 206-239 17-49 (68)
113 1wev_A Riken cDNA 1110020M19; 38.6 6.4 0.00022 29.5 -0.1 37 206-242 14-52 (88)
114 1iml_A CRIP, cysteine rich int 38.1 8.5 0.00029 27.0 0.6 26 211-238 3-28 (76)
115 2e6s_A E3 ubiquitin-protein li 37.7 6.8 0.00023 28.8 -0.0 32 209-240 27-58 (77)
116 2kgg_A Histone demethylase jar 35.2 14 0.00048 24.7 1.2 31 209-239 3-35 (52)
117 1wee_A PHD finger family prote 35.0 14 0.00049 26.2 1.4 32 207-239 15-47 (72)
118 2cu8_A Cysteine-rich protein 2 35.0 19 0.00064 25.2 2.0 31 207-239 8-38 (76)
119 2kwj_A Zinc finger protein DPF 34.8 7.3 0.00025 30.4 -0.3 32 209-240 59-90 (114)
120 3asl_A E3 ubiquitin-protein li 34.6 6.9 0.00024 28.1 -0.4 31 210-240 20-50 (70)
121 3kv5_D JMJC domain-containing 33.4 16 0.00054 35.7 1.8 32 207-238 35-67 (488)
122 1x64_A Alpha-actinin-2 associa 32.8 34 0.0012 24.6 3.2 31 206-239 23-53 (89)
123 2ysm_A Myeloid/lymphoid or mix 32.6 9.9 0.00034 29.2 0.1 33 208-240 54-86 (111)
124 2rsd_A E3 SUMO-protein ligase 29.0 17 0.00059 25.6 0.9 31 207-238 9-41 (68)
125 2d8v_A Zinc finger FYVE domain 28.7 33 0.0011 24.8 2.4 31 206-240 6-37 (67)
126 3v43_A Histone acetyltransfera 27.7 31 0.0011 26.5 2.3 35 206-240 59-94 (112)
127 3ask_A E3 ubiquitin-protein li 27.6 16 0.00053 32.4 0.6 33 208-240 174-206 (226)
128 2d8y_A Eplin protein; LIM doma 27.5 42 0.0014 24.2 2.9 31 207-239 14-44 (91)
129 1x62_A C-terminal LIM domain p 27.2 34 0.0012 24.1 2.3 30 207-239 14-43 (79)
130 3kqi_A GRC5, PHD finger protei 25.9 32 0.0011 24.6 1.9 33 207-239 8-41 (75)
131 1wen_A Inhibitor of growth fam 25.9 34 0.0012 24.5 2.0 31 207-239 15-48 (71)
132 3u5n_A E3 ubiquitin-protein li 25.2 13 0.00044 31.7 -0.4 35 206-243 5-39 (207)
133 1zbd_B Rabphilin-3A; G protein 24.6 29 0.00099 28.0 1.6 32 206-237 53-86 (134)
134 3shb_A E3 ubiquitin-protein li 24.1 12 0.0004 27.6 -0.8 33 210-242 28-60 (77)
135 4gne_A Histone-lysine N-methyl 23.6 37 0.0013 26.4 2.0 31 206-239 13-45 (107)
136 1a7i_A QCRP2 (LIM1); LIM domai 23.2 24 0.00083 24.9 0.8 31 207-239 6-36 (81)
137 3mjh_B Early endosome antigen 22.3 13 0.00043 23.5 -0.8 16 207-222 4-19 (34)
138 2l4z_A DNA endonuclease RBBP8, 21.9 67 0.0023 24.9 3.3 32 206-239 59-90 (123)
139 1z2q_A LM5-1; membrane protein 20.5 1E+02 0.0035 22.4 3.8 35 206-240 19-54 (84)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=110.90 Aligned_cols=66 Identities=23% Similarity=0.438 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHhcCCeeEeecCCCCCCCCcccCCCCCCchhhhcccccccCCCCCCCCcccccccccccCCCeeEEeCCC
Q 023728 151 PTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCL 230 (278)
Q Consensus 151 ~~~~g~SeeeI~~LPv~~~~~~~~~~~ss~~~~sSSss~~e~kq~s~~a~~~~k~~d~~tCsICLEdf~~GE~Vr~LPC~ 230 (278)
....+++++.|++||..+++.... ..+++..|+||+++|..++.++.|||+
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~-----------------------------~~~~~~~C~IC~~~~~~~~~~~~l~C~ 62 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHG-----------------------------AVGQEMCCPICCSEYVKGDVATELPCH 62 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCS-----------------------------SSSSCSEETTTTEECCTTCEEEEETTT
T ss_pred cCCCCCCHHHHHhCCCeeeccccc-----------------------------ccCCCCCCcccChhhcCCCcEEecCCC
Confidence 445689999999999888864321 124678999999999999999999999
Q ss_pred CccChhhHHHHHhcC
Q 023728 231 HQLFCSSMQIALTHG 245 (278)
Q Consensus 231 H~FH~~CId~WLkrs 245 (278)
|.||..||++||+++
T Consensus 63 H~Fh~~Ci~~wl~~~ 77 (91)
T 2l0b_A 63 HYFHKPCVSIWLQKS 77 (91)
T ss_dssp EEEEHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHcC
Confidence 999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=101.99 Aligned_cols=40 Identities=23% Similarity=0.576 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+..+|+||+++|..++.++.|||+|.||.+||++||+++
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~ 60 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999876
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=1.1e-12 Score=97.10 Aligned_cols=60 Identities=33% Similarity=0.569 Sum_probs=51.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC--CCC-ccccccccCCCCCCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG--CGN-RERAQFANSEQDPVGMK 265 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs--cg~-~~~~~~~~~~~~~~~~~ 265 (278)
.+..+|+||++.|..++.+..|||+|.||..||.+|++++ |+. |......+...+|+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 75 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLT 75 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSSCT
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCCCC
Confidence 5688999999999999999999999999999999999876 555 77777777777777753
No 4
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.20 E-value=1.1e-11 Score=97.96 Aligned_cols=56 Identities=20% Similarity=0.395 Sum_probs=40.9
Q ss_pred CCcccccccccccCCC---------------eeEEeCCCCccChhhHHHHHh-------cCCCC-ccccccccCCCCCCC
Q 023728 207 DELTCTVCLEQVNVGE---------------IVRSLPCLHQLFCSSMQIALT-------HGCGN-RERAQFANSEQDPVG 263 (278)
Q Consensus 207 d~~tCsICLEdf~~GE---------------~Vr~LPC~H~FH~~CId~WLk-------rscg~-~~~~~~~~~~~~~~~ 263 (278)
.+.+|+||+++|..++ .++.+||+|.||.+||++||+ ..|+. |...... ....|.|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~-~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK-TGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC-SSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC-CCCCCCC
Confidence 4569999999997654 455789999999999999994 35776 5544444 3444444
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.18 E-value=7.5e-12 Score=86.59 Aligned_cols=40 Identities=33% Similarity=0.662 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LP-C~H~FH~~CId~WLkrs 245 (278)
+++.+|+||+++|..++.+..+| |+|.||.+||++|++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~ 43 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH 43 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC
Confidence 46789999999999999999998 99999999999999865
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=90.16 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=37.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.++..|+||+++|..++.++.|||+|.||.+||.+|++++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR 52 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC
Confidence 5688999999999999999999999999999999999875
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=2.2e-11 Score=88.04 Aligned_cols=40 Identities=35% Similarity=0.659 Sum_probs=37.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++...|+||++.|..++.++.+||+|.||..||.+|++++
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN 51 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 5678999999999999999999999999999999999865
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.9e-11 Score=88.78 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=31.9
Q ss_pred CCCccccccccccc-----------CCCeeEEeC-CCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVN-----------VGEIVRSLP-CLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~-----------~GE~Vr~LP-C~H~FH~~CId~WLkrs 245 (278)
.++.+|+||+++|. .++.++.+| |+|.||.+||++||+++
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC
Confidence 45667777777774 456677776 99999999999999976
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.01 E-value=1.3e-10 Score=80.12 Aligned_cols=40 Identities=28% Similarity=0.610 Sum_probs=35.0
Q ss_pred CCCcccccccccccCC-CeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVG-EIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~G-E~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+..+|+||+++|.++ +.+..+||+|.||.+||++|++++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 43 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG 43 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC
Confidence 3678999999999665 468889999999999999999976
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=85.18 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=34.8
Q ss_pred CCCcccccccccccCCCeeEEeCCC-----CccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCL-----HQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~-----H~FH~~CId~WLkrs 245 (278)
.++..|.||+++|++++.+ .+||. |.||.+||++||+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~ 56 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS 56 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC
Confidence 5678999999999988877 58996 999999999999975
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.6e-10 Score=80.93 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=34.9
Q ss_pred CCCcccccccccccC----CCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~----GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++.|.+ ++.+..++|+|.||.+||++|++++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 56 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 56 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC
Confidence 578899999999975 3556889999999999999999865
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.92 E-value=4e-10 Score=81.42 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=35.4
Q ss_pred CCCcccccccccccC----CCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~----GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
+++.+|+||++.|.+ ++.+..++|+|.||.+||++|++++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 51 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 51 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC
Confidence 578899999999865 4677889999999999999999876
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.91 E-value=5.1e-10 Score=89.26 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=34.1
Q ss_pred CCCcccccccccccCC---------------CeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVG---------------EIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~G---------------E~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.++.+|+||+++|.+. ..++.+||+|.||.+||++||+++
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~ 89 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR 89 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC
Confidence 4678899999999854 147788999999999999999876
No 14
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=81.10 Aligned_cols=40 Identities=20% Similarity=0.511 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCCe-eEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~-Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+..+|+||++.|.+++. ...+||+|.||..||.+|++++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC
Confidence 578899999999998775 7788999999999999999975
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.84 E-value=8.7e-10 Score=77.76 Aligned_cols=39 Identities=18% Similarity=0.526 Sum_probs=34.1
Q ss_pred CCcccccccccccC----CCeeEEeCCCCccChhhHHHHHhcC
Q 023728 207 DELTCTVCLEQVNV----GEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 207 d~~tCsICLEdf~~----GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++.+|+||++.+.+ ++.+..++|+|.||.+||.+|++++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 44 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 44 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC
Confidence 57799999999975 3567889999999999999999875
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.77 E-value=3e-09 Score=76.35 Aligned_cols=38 Identities=24% Similarity=0.498 Sum_probs=33.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
+++.+|+||++.+.+ .+..+||+|.||.+||.+|++++
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~ 40 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQN 40 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHS
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCc
Confidence 357799999999864 45789999999999999999976
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.2e-09 Score=77.66 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrscg~ 248 (278)
.+...|+||++.+.+ ..+||+|.||..||.+|++++..+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~C 51 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNC 51 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcC
Confidence 577899999999987 679999999999999999855333
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.72 E-value=1.5e-09 Score=88.20 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=1.7
Q ss_pred CCCcccccccccccC-------------CC--eeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNV-------------GE--IVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~-------------GE--~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.++++|+||+++|.+ ++ .+..++|+|.||.+||++||+++
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~ 100 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR 100 (117)
T ss_dssp CCC----------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC
Confidence 457899999999975 33 33446899999999999999876
No 19
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=70.94 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=31.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.+.+. ..+||+|.||..||.+|+++
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~ 48 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWED 48 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTS
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHh
Confidence 5788999999999864 34899999999999999764
No 20
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.2e-08 Score=76.64 Aligned_cols=51 Identities=10% Similarity=0.264 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC----CCC-ccccccccCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG----CGN-RERAQFANSE 258 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs----cg~-~~~~~~~~~~ 258 (278)
+...+|+||.+.+..|+... .|+|.||..||++||+++ |+. +..-.+...+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 57789999999999876554 899999999999999977 554 4443444333
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.2e-08 Score=72.43 Aligned_cols=36 Identities=17% Similarity=0.459 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.++.+|+||++.+.+ -..+||+|.||..||.+|+++
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHH
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHc
Confidence 678899999999984 345699999999999999985
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=4.6e-09 Score=76.47 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+..+|+||++.+.+ ...+||+|.||..||.+|++++
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCS
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCC
Confidence 567899999999865 3567999999999999999866
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.3e-08 Score=74.34 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC--CCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG--CGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs--cg~ 248 (278)
++...|+||++.+.+ .+..++|+|.||..||.+|++.+ |+.
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~ 55 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPK 55 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTT
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCC
Confidence 578899999999875 44445999999999999999765 554
No 24
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=1.3e-08 Score=81.02 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=35.1
Q ss_pred CCCcccccccccccC----CCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~----GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.++.+|+||++.|.+ ++.+..++|+|.||.+||++||+++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 48 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 48 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC
Confidence 467899999999965 4667899999999999999999875
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=4.2e-08 Score=72.96 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++...|+||++.|.+ .+ .+||+|.||..||.+|++++
T Consensus 13 ~~~~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~~~~~~~ 49 (81)
T 2csy_A 13 EIPFRCFICRQAFQN--PV-VTKCRHYFCESCALEHFRAT 49 (81)
T ss_dssp CCCSBCSSSCSBCCS--EE-ECTTSCEEEHHHHHHHHHHC
T ss_pred CCCCCCcCCCchhcC--ee-EccCCCHhHHHHHHHHHHCC
Confidence 567899999999965 33 58999999999999999865
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.56 E-value=3e-08 Score=72.85 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LP-C~H~FH~~CId~WLkrs 245 (278)
.+...|+||++.|.+ . ..+| |+|.||..||..|++++
T Consensus 13 ~~~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~~ 50 (74)
T 2yur_A 13 PDELLCLICKDIMTD--A-VVIPCCGNSYCDECIRTALLES 50 (74)
T ss_dssp CGGGSCSSSCCCCTT--C-EECSSSCCEECTTHHHHHHHHS
T ss_pred CCCCCCcCCChHHhC--C-eEcCCCCCHHHHHHHHHHHHhc
Confidence 578899999999985 3 3489 99999999999999864
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3.9e-08 Score=71.26 Aligned_cols=36 Identities=17% Similarity=0.459 Sum_probs=31.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.+.+ ...+||+|.||..||.+|++.
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~ 53 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGET 53 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSS
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHc
Confidence 678899999999884 345699999999999999973
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=5.9e-08 Score=69.46 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHh
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLk 243 (278)
.+...|+||++.+.+.. . ++|+|.||..||.+|++
T Consensus 13 ~~~~~C~IC~~~~~~p~--~-~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK--Q-TECGHRFCESCMAALLS 47 (66)
T ss_dssp CCCEECTTTCCEESSCC--C-CSSSCCCCHHHHHHHHT
T ss_pred CcCCCCCCCChHhcCee--E-CCCCCHHHHHHHHHHHH
Confidence 57889999999997542 2 79999999999999995
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.48 E-value=1e-07 Score=70.29 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.|.+. ..+||+|.||..||..|+++
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYES 52 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHH
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHh
Confidence 5788999999998753 26899999999999999998
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.2e-07 Score=68.56 Aligned_cols=36 Identities=28% Similarity=0.557 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.+.+ ...+||+|.||..||..|+++
T Consensus 17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHH
T ss_pred cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHH
Confidence 578899999999975 244799999999999999987
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=7e-08 Score=68.84 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=31.5
Q ss_pred CCcccccccc-cccCCCe-eEEeCCCCccChhhHHHHHhcC
Q 023728 207 DELTCTVCLE-QVNVGEI-VRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 207 d~~tCsICLE-df~~GE~-Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++.+|+||++ .|..... +..++|+|.||..||++|+.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~ 42 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG 42 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC
Confidence 4678999999 6766543 3557999999999999998753
No 32
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.44 E-value=4.3e-08 Score=80.35 Aligned_cols=36 Identities=22% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++.+|+||++.|.+ ...+||+|.||..||..|++++
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTC
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcC
Confidence 46789999999974 3568999999999999999876
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.43 E-value=6.9e-08 Score=76.77 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=34.6
Q ss_pred CCCcccccccccccC----CCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNV----GEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~----GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++...|+||++.|.+ +..+..++|+|.||..||++||+++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 113 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 113 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC
Confidence 567899999999975 3456788999999999999999875
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.43 E-value=4.8e-08 Score=75.97 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++.|.+ .+..++|+|.||..||.+|++.+
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHC
Confidence 467899999999974 55558999999999999999965
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.40 E-value=3.5e-08 Score=72.44 Aligned_cols=37 Identities=30% Similarity=0.602 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+..+|+||++.|.+- ..+||+|.||.+||..|++.+
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~ 46 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEA 46 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCC
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhc
Confidence 6788999999999752 347999999999999999873
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.38 E-value=8.6e-08 Score=73.87 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++.|.+ .+..+||+|.||..||..|++++
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 20 DDLLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp HHHTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTC
T ss_pred CCCCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCC
Confidence 457899999999975 44445899999999999999875
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.36 E-value=1.4e-07 Score=73.88 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=32.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++.|.+ .+..+||+|.||..||..|++.+
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSC
T ss_pred CCcCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhC
Confidence 468899999999974 55556999999999999999865
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.33 E-value=2.6e-07 Score=67.95 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=31.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.|.+ . ..+||+|.|+..||.+|+++
T Consensus 6 ~~~~~C~IC~~~~~~--P-v~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 6 PEYFRCPISLELMKD--P-VIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSSSSCTTTSCCCSS--E-EEETTTEEEEHHHHHHHHTT
T ss_pred cccCCCCCccccccC--C-EEcCCCCeecHHHHHHHHHH
Confidence 578899999999875 3 34699999999999999986
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.27 E-value=3.4e-07 Score=76.79 Aligned_cols=37 Identities=27% Similarity=0.642 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.|.+ .+..+||+|.||..||.+|++.
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHT
T ss_pred CCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHh
Confidence 456799999999985 5666699999999999999986
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.23 E-value=6.4e-07 Score=67.80 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=31.3
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LP-C~H~FH~~CId~WLkr 244 (278)
.+..+|+||++.|.+ . ..+| |+|.|+..||..|+++
T Consensus 11 ~~~~~C~IC~~~~~~--p-~~~~~CgH~fC~~Ci~~~~~~ 47 (92)
T 3ztg_A 11 PDELLCLICKDIMTD--A-VVIPCCGNSYCDECIRTALLE 47 (92)
T ss_dssp CTTTEETTTTEECSS--C-EECTTTCCEECHHHHHHHHHH
T ss_pred CcCCCCCCCChhhcC--c-eECCCCCCHHHHHHHHHHHHh
Confidence 578899999999874 2 4689 9999999999999974
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.23 E-value=3.3e-07 Score=73.45 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+..+|+||++.|.+ . ..+||+|.||..||..|++.
T Consensus 50 ~~~~~C~IC~~~~~~--p-~~~~CgH~fC~~Ci~~~~~~ 85 (124)
T 3fl2_A 50 EETFQCICCQELVFR--P-ITTVCQHNVCKDCLDRSFRA 85 (124)
T ss_dssp HHHTBCTTTSSBCSS--E-EECTTSCEEEHHHHHHHHHT
T ss_pred ccCCCCCcCChHHcC--c-EEeeCCCcccHHHHHHHHhH
Confidence 357799999999984 2 44699999999999999974
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.18 E-value=8.4e-07 Score=69.14 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=30.4
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
+...|+||++.+.+. ..+||+|.||..||..|++.+
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSS
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhC
Confidence 567899999998753 237999999999999999963
No 43
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.16 E-value=8.1e-07 Score=63.74 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCCeeEEeCCC--C---ccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCL--H---QLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~--H---~FH~~CId~WLkrs 245 (278)
+++..|.||+++ .++.+ .+||. | .||.+||++|++.+
T Consensus 4 ~~~~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~ 45 (60)
T 1vyx_A 4 EDVPVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTIS 45 (60)
T ss_dssp CSCCEETTTTEE--CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCEeEEeecC--CCCce-ecCcCCCCchhhhHHHHHHHHHHhC
Confidence 577899999998 34444 58965 4 99999999999864
No 44
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.15 E-value=5.6e-07 Score=85.41 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCcccccccccccCCCee----E-EeCCCCccChhhHHHHHhcCC
Q 023728 206 EDELTCTVCLEQVNVGEIV----R-SLPCLHQLFCSSMQIALTHGC 246 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~V----r-~LPC~H~FH~~CId~WLkrsc 246 (278)
+...+|+||++.+.++..+ . ..+|+|.||..||.+||+...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~ 351 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM 351 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCC
Confidence 5678999999999884433 2 346999999999999998643
No 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.13 E-value=2.4e-06 Score=64.15 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=34.2
Q ss_pred CCCcccccccccccCCCe-eEEeCCCCccChhhHHHHHhc---CCCC-ccc
Q 023728 206 EDELTCTVCLEQVNVGEI-VRSLPCLHQLFCSSMQIALTH---GCGN-RER 251 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~-Vr~LPC~H~FH~~CId~WLkr---scg~-~~~ 251 (278)
+++.+|+||+|.+...+. +..++|+|.|+..||..|++. .|+. |+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~ 59 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCB
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCc
Confidence 578899999999865443 223459999999999999853 4665 443
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.11 E-value=8e-07 Score=70.79 Aligned_cols=37 Identities=19% Similarity=0.503 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++.+.+. ..+||+|.|+..||.+|++++
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHH
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhC
Confidence 5778999999998753 447999999999999999853
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.10 E-value=2.6e-07 Score=72.97 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc---CCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH---GCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr---scg~ 248 (278)
.++.+|+||++.|.+ -..+||+|.||..||.+|+++ .|+.
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~ 55 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPF 55 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTT
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCC
Confidence 467899999999874 345699999999999999976 5665
No 48
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.03 E-value=1.7e-06 Score=66.18 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
+..+|+||++++...+.++..+|+|.|..+||..+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 57789999999988777776789999999999999974
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.02 E-value=1.1e-06 Score=61.33 Aligned_cols=39 Identities=26% Similarity=0.544 Sum_probs=32.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrscg~ 248 (278)
.+..+|+||++.|.+ -..|||+|.|+..||..| ...|+.
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~-~~~CP~ 42 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS-GMQCPI 42 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS-SSSCSS
T ss_pred ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC-CCCCCc
Confidence 578899999999985 366899999999999985 445655
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.01 E-value=1.2e-06 Score=73.18 Aligned_cols=40 Identities=25% Similarity=0.542 Sum_probs=32.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc---CCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH---GCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr---scg~ 248 (278)
.+...|+||++.|.+ .+ .+||+|.||..||..|++. .|+.
T Consensus 76 ~~~~~C~IC~~~~~~--pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~ 118 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ--PV-TTECFHNVCKDCLQRSFKAQVFSCPA 118 (150)
T ss_dssp HHHTBCTTTSSBCSS--EE-ECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred ccCCEeecCChhhcC--CE-EcCCCCchhHHHHHHHHHhCCCcCCC
Confidence 356799999999875 33 3899999999999999985 3554
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.00 E-value=1.3e-06 Score=69.02 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
.+...|+||++.+.+ .+. +||+|.||..||.+|++.
T Consensus 21 ~~~~~C~IC~~~~~~--p~~-~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 21 VKSISCQICEHILAD--PVE-TSCKHLFCRICILRCLKV 56 (116)
T ss_dssp HHHTBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHH
T ss_pred cCCCCCCCCCcHhcC--cEE-cCCCCcccHHHHHHHHhH
Confidence 457799999999874 333 799999999999999987
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.98 E-value=2.5e-06 Score=70.67 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
++..+|+||++.+.+- + .++|+|.|+..||.+|++.+
T Consensus 29 ~~~~~C~IC~~~~~~p--v-~~~CgH~FC~~Ci~~~~~~~ 65 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP--F-QAQCGHRYCSFCLASILSSG 65 (141)
T ss_dssp CGGGBCTTTCSBCSSE--E-ECTTSCEEEHHHHHHHGGGS
T ss_pred CcCcCCCCCChhhcCc--E-ECCCCCccCHHHHHHHHhcC
Confidence 6788999999998754 3 37999999999999999843
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.94 E-value=4.7e-06 Score=80.05 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHHHHh---cCCCC
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT---HGCGN 248 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLk---rscg~ 248 (278)
....|+||++.+.+ ...+||+|.||..||..|++ ..|+-
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~ 372 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPF 372 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence 44799999999854 57799999999999999998 44554
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.90 E-value=1.5e-06 Score=69.10 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcCCCC-ccc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHGCGN-RER 251 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrscg~-~~~ 251 (278)
.+..+|+||++.|.+ .+...||+|.|+..||..|++..|+. +..
T Consensus 20 ~~~~~C~IC~~~~~~--pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~ 64 (117)
T 1jm7_B 20 EKLLRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIGTGCPVCYTP 64 (117)
T ss_dssp HHTTSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTTTBCSSSCCB
T ss_pred hhCCCCCCCChHhhC--ccEeCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 468899999999964 34333999999999999999988877 443
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.78 E-value=2.4e-05 Score=60.92 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeCCC-CccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCL-HQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~-H~FH~~CId~WLkrs 245 (278)
.++..|+||++-|.+ .|. +||+ |.|-+.||.+||+++
T Consensus 20 p~~~~CpI~~~~m~d--PV~-~~cG~htf~r~cI~~~l~~~ 57 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD--PVV-LPSSRVTVDRSTIARHLLSD 57 (98)
T ss_dssp CTTTBCTTTCSBCSS--EEE-CTTTCCEEEHHHHHHHTTTS
T ss_pred cHhcCCcCccccccC--CeE-CCCCCeEECHHHHHHHHHhC
Confidence 578899999999884 444 7999 999999999999863
No 56
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.65 E-value=5.8e-05 Score=57.03 Aligned_cols=37 Identities=19% Similarity=0.052 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.++..|+||++-+.+ -| .+||||.|-+.||.+|++.+
T Consensus 12 p~~~~CpI~~~~m~d--PV-~~~cGhtf~r~~I~~~l~~~ 48 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD--PV-RLPSGTVMDRSIILRHLLNS 48 (85)
T ss_dssp CTTTBCTTTCSBCSS--EE-ECTTSCEEEHHHHHHHHHHC
T ss_pred chheECcccCchhcC--Ce-ECCCCCEECHHHHHHHHhcC
Confidence 578899999999885 33 47899999999999999863
No 57
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=3.3e-05 Score=59.34 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.++..|+||++-|.+ .|..-.|+|.|-+.||.+||+++
T Consensus 5 ~~~~~CPI~~~~~~d--PV~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK--PVKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp SSCCBCTTTCSBCSS--EEEESSSCCEEEHHHHHHHHHHH
T ss_pred CcEeECcCcCchhcC--CEEcCCCCCeecHHHHHHHHHHc
Confidence 467899999999884 56533499999999999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.62 E-value=1.2e-05 Score=59.09 Aligned_cols=38 Identities=18% Similarity=0.482 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrscg~ 248 (278)
.++..|+||++.+.+ ...+||+|. |+..|+..| ..|+-
T Consensus 22 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~--~~CP~ 60 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV--DKCPM 60 (74)
T ss_dssp HHHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC--SBCTT
T ss_pred ccCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC--ccCCC
Confidence 457799999998764 456899999 999999999 66665
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.49 E-value=5.4e-05 Score=59.14 Aligned_cols=37 Identities=19% Similarity=0.048 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++-|.+ .| .+||+|.|-+.||.+||..+
T Consensus 27 p~~~~CpI~~~~m~d--PV-~~~cGhtf~r~~I~~~l~~~ 63 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD--PV-RLPSGTIMDRSIILRHLLNS 63 (100)
T ss_dssp STTTBCTTTCSBCSS--EE-EETTTEEEEHHHHHHHTTSC
T ss_pred cHhhCCcCccCcccC--Ce-ECCCCCEEchHHHHHHHHcC
Confidence 568899999999874 44 47899999999999999853
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.49 E-value=3.5e-05 Score=55.23 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=29.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrs 245 (278)
.++..|.||++...+. .+..+||+|. |-.+|+..|.+++
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~ 45 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKKRN 45 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHHTT
T ss_pred CCcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHHcC
Confidence 4677999999986642 1123499999 6789999999854
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.47 E-value=3.3e-05 Score=64.78 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc---CCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH---GCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr---scg~ 248 (278)
.+...|+||++.+.+ .+. ++|+|.|...||.+|++. .|+.
T Consensus 16 ~~~~~C~IC~~~~~~--pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~ 58 (170)
T 3hcs_A 16 ESKYECPICLMALRE--AVQ-TPCGHRFCKACIIKSIRDAGHKCPV 58 (170)
T ss_dssp CGGGBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred CCCCCCCCCChhhcC--cEE-CCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 578899999999875 343 799999999999999975 4554
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=1e-05 Score=59.50 Aligned_cols=38 Identities=18% Similarity=0.482 Sum_probs=29.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrscg~ 248 (278)
.+..+|+||++.+.+ ...+||+|. |...|+... ..|+-
T Consensus 23 ~~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~--~~CP~ 61 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV--DKCPM 61 (75)
T ss_dssp HHHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC--SBCTT
T ss_pred CCCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC--CCCcc
Confidence 456789999998764 456899999 999999763 45654
No 63
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.33 E-value=0.00014 Score=64.37 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++-+.+ .| .+||+|.|.+.||.+||+++
T Consensus 206 ~~~~~c~i~~~~~~d--Pv-~~~~gh~f~~~~i~~~~~~~ 242 (281)
T 2c2l_A 206 PDYLCGKISFELMRE--PC-ITPSGITYDRKDIEEHLQRV 242 (281)
T ss_dssp CSTTBCTTTCSBCSS--EE-ECSSCCEEETTHHHHHHHHT
T ss_pred CcccCCcCcCCHhcC--Ce-ECCCCCEECHHHHHHHHHHC
Confidence 467899999999874 44 48899999999999999864
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00038 Score=63.71 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
..+..|+||++-|. +.|+...|+|.|-+.||..|++.+
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~ 216 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGY 216 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTC
T ss_pred ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhC
Confidence 57889999999996 678878999999999999999864
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.92 E-value=0.00049 Score=59.48 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.+...|+||++-+.+ .|. +||||.|-+.||..||..+
T Consensus 104 p~~f~CPI~~elm~D--PV~-~~~Ghtfer~~I~~~l~~~ 140 (179)
T 2f42_A 104 PDYLCGKISFELMRE--PCI-TPSGITYDRKDIEEHLQRV 140 (179)
T ss_dssp CGGGBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHHT
T ss_pred cHhhcccCccccCCC--CeE-CCCCCEECHHHHHHHHHhC
Confidence 478899999999884 554 5999999999999999864
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.83 E-value=0.00043 Score=49.29 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrs 245 (278)
+....|.||++...+. .+..+||+|. |-.+|+..|.+++
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~ 44 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAG 44 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTT
T ss_pred CcCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhC
Confidence 3567899999986542 1223499998 9999999999763
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.72 E-value=0.0011 Score=48.01 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrscg~ 248 (278)
.+...|.||++... .+..+||+|. |...|+.. .+.|+-
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~--~~~CP~ 51 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY--FQQCPM 51 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH--CSSCTT
T ss_pred CCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc--CCCCCC
Confidence 56789999999865 3677999999 99999994 456665
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.68 E-value=0.00041 Score=65.43 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=32.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrscg~ 248 (278)
.++..|+||++.+.+ ...+||+|. |+..|+..| ..|+-
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~--~~CP~ 331 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL--RKCPI 331 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC--SBCTT
T ss_pred cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC--CcCCC
Confidence 467899999999863 566799999 999999999 67765
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.60 E-value=0.00078 Score=48.02 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=30.0
Q ss_pred CcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 208 ELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 208 ~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
...|+||++-++ |.|...+|+|.|-+.||.+||+++
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~ 38 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT 38 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC
Confidence 357999999998 456555899999999999999864
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.52 E-value=0.00056 Score=50.95 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=31.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCc-cChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQ-LFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~-FH~~CId~WLkrscg~ 248 (278)
.++..|.||++.+.+ +..+||+|. |-..|+..| +.|+-
T Consensus 16 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~--~~CP~ 54 (79)
T 2yho_A 16 KEAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL--QSCPV 54 (79)
T ss_dssp HHHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC--SBCTT
T ss_pred CCCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc--CcCCC
Confidence 356789999998653 667899999 999999998 36765
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.20 E-value=0.0029 Score=56.72 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhc
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTH 244 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkr 244 (278)
+....|.||-+-+..|..... |+|.||..|+++|++.
T Consensus 178 ~~i~~C~iC~~iv~~g~~C~~--C~~~~H~~C~~~~~~~ 214 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQS 214 (238)
T ss_dssp TTCCBCTTTCSBCSSCEECSS--SCCEECHHHHHHHTTT
T ss_pred CCCCcCcchhhHHhCCcccCc--cChHHHHHHHHHHHHh
Confidence 357899999999998754443 9999999999999964
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.65 E-value=0.029 Score=42.70 Aligned_cols=36 Identities=8% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHH-HH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI-AL 242 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~-WL 242 (278)
++..|.||++++...-...-++|+|.|-..|+.. |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999999875545556699999999999998 54
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.79 E-value=0.099 Score=41.19 Aligned_cols=37 Identities=22% Similarity=0.477 Sum_probs=29.2
Q ss_pred ccccccccccCCCeeEEeCCCCccChhhHHHHHhcC---CCC
Q 023728 210 TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG---CGN 248 (278)
Q Consensus 210 tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs---cg~ 248 (278)
-|.+|--.+. ...|.+||.|.|-.+|+..|.+++ |+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~ 42 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPG 42 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcC
Confidence 4777765554 467999999999999999999764 555
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=86.82 E-value=0.55 Score=35.94 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
..++.|.|| +.|..++...-=-|+-.||..|+.+
T Consensus 13 ~~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 13 VNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCcccCcc-ccccccceeccccccccccHhhccc
Confidence 468899998 4555665554445789999999987
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.70 E-value=0.23 Score=35.81 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHhcC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALTHG 245 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLkrs 245 (278)
.....|.||.+ .|+.|.-=-|...||..|+++.|+.-
T Consensus 10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~ 46 (66)
T 2lri_C 10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSR 46 (66)
T ss_dssp CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCC
T ss_pred CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcC
Confidence 45678999974 46666555689999999999888643
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=73.86 E-value=1.1 Score=29.91 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=24.1
Q ss_pred ccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 210 TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 210 tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.|.||...-..++.|.-=-|...||..|+++
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 5899987655555666556999999999976
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.60 E-value=1.6 Score=30.62 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=26.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIAL 242 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WL 242 (278)
..+..|.||.+ .|+.+.-=-|...||..|+++=|
T Consensus 9 ~~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p~l 42 (61)
T 2l5u_A 9 DHQDYCEVCQQ---GGEIILCDTCPRAYHMVCLDPDM 42 (61)
T ss_dssp CCCSSCTTTSC---CSSEEECSSSSCEEEHHHHCTTC
T ss_pred CCCCCCccCCC---CCcEEECCCCChhhhhhccCCCC
Confidence 56789999987 36666655688999999998743
No 78
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.52 E-value=0.85 Score=32.11 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.7
Q ss_pred CCCccccccccccc--CCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVN--VGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~--~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.++..|.||..... .++.|.---|.-.||..|+.+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 46789999998753 355555556999999999776
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=71.35 E-value=1.5 Score=30.61 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=26.7
Q ss_pred CCCcccccccccccCC-CeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVG-EIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~G-E~Vr~LPC~H~FH~~CId 239 (278)
++...|+||...+.++ ..|.--.|..-||..|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 4677899999998654 456655799999999984
No 80
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=68.80 E-value=2.4 Score=30.25 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCCcccccccccccCCC-eeEEe-CCCCccChhhH
Q 023728 206 EDELTCTVCLEQVNVGE-IVRSL-PCLHQLFCSSM 238 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE-~Vr~L-PC~H~FH~~CI 238 (278)
+....|.+|...+.+++ .|.-= -|.--||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 46778999999998765 44444 69999999995
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=68.79 E-value=1.4 Score=31.33 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
..+..|.||-+. |+.|.-=-|.-.||..|+.+
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p 37 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSP 37 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSS
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCC
Confidence 467899999863 66655556889999999875
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=68.50 E-value=1.7 Score=37.33 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=26.4
Q ss_pred CcccccccccccCCC----eeEEeCCCCccChhhHH
Q 023728 208 ELTCTVCLEQVNVGE----IVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 208 ~~tCsICLEdf~~GE----~Vr~LPC~H~FH~~CId 239 (278)
+..|+||..-|.+++ .|..=-|..-||..|+.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccc
Confidence 457999999999887 55655699999999984
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.30 E-value=1.2 Score=30.64 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
..+..|.||.+. |+.|.-=-|...||..|+++
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~p 38 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP 38 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSS
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCC
Confidence 467789999874 66665556899999999987
No 84
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=66.84 E-value=1.4 Score=30.92 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=24.4
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
..+..|.||-+ .|+.+.-=-|...||..|+.+
T Consensus 7 ~~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~p 38 (61)
T 1mm2_A 7 HHMEFCRVCKD---GGELLCCDTCPSSYHIHCLNP 38 (61)
T ss_dssp SSCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSS
T ss_pred CCCCcCCCCCC---CCCEEEcCCCCHHHcccccCC
Confidence 45778999985 355555556889999999886
No 85
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.27 E-value=2.8 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.407 Sum_probs=25.0
Q ss_pred CCCcccccccccc--cCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQV--NVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf--~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
+++..|.||...- ..++.|.-=-|.-.||..|+.+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 5678999998753 2233444445888999999875
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=63.91 E-value=2 Score=29.81 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.+..|.||... |+.|.-=-|.-.||..|+.+
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p 34 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP 34 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSS
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCC
Confidence 57789999874 66666556899999999987
No 87
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.80 E-value=5.4 Score=29.20 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=23.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.....|+.|-+.+. ++.|.. -+..||.+|..=
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a--~~~~~H~~CF~C 54 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVA--LGKSWHPEEFNC 54 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEE--TTEEECTTTCBC
T ss_pred CCCCCCccCCCEec-ceEEEE--CCccccccCCcc
Confidence 45678999999884 566554 468899888643
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.62 E-value=2.2 Score=32.41 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=26.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.+...|.||...-..++.|.-=-|...||..|+.+
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~P 48 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP 48 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSS
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCC
Confidence 56778999998755444555556999999999974
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=57.49 E-value=4.3 Score=31.26 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=28.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHh
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLk 243 (278)
..+..|.||.+.=+..+.|.--.|...||..|++.++.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 46889999988633333455556999999999987764
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.64 E-value=3.3 Score=31.55 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
+.+..|.||... |+.+.-=-|.-.||..|++|
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~P 54 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLP 54 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSST
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCC
Confidence 567789999964 56555556888999999976
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=56.58 E-value=4.8 Score=30.78 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=26.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
++...| ||-.....|..|.-=-|.-.||..|+.+
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTC
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCC
Confidence 345567 9988877777777767999999999853
No 92
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=55.67 E-value=4.4 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=22.3
Q ss_pred CcccccccccccCCCeeEEeCCCCccChhh
Q 023728 208 ELTCTVCLEQVNVGEIVRSLPCLHQLFCSS 237 (278)
Q Consensus 208 ~~tCsICLEdf~~GE~Vr~LPC~H~FH~~C 237 (278)
...|+.|-..+-..|.+... +..||..|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~--g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCL--DKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSS--SSCCCGGG
T ss_pred CCcCCccCCEEecceeEEEC--CeEecccC
Confidence 45899999998777776643 68999998
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.60 E-value=7.4 Score=30.20 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCcccccccccc------cCCCeeEEeCCCCccChhhHHH
Q 023728 207 DELTCTVCLEQV------NVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 207 d~~tCsICLEdf------~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
....|.+|+..= ..++.|.---|...||..|+..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 467899999762 3445666677999999999963
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.62 E-value=3.3 Score=35.31 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=23.5
Q ss_pred CcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 208 ELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 208 ~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
+..|.||.+. |+.+..--|...||..|+++
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p 31 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLP 31 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTT
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCC
Confidence 4679999854 66666666889999999964
No 95
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.52 E-value=3.3 Score=32.36 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=24.4
Q ss_pred ccccccccccc-------CCCeeEEeCCCCccChhhHHHH
Q 023728 209 LTCTVCLEQVN-------VGEIVRSLPCLHQLFCSSMQIA 241 (278)
Q Consensus 209 ~tCsICLEdf~-------~GE~Vr~LPC~H~FH~~CId~W 241 (278)
..|.||+..-. .++.|.---|...||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987641 2345666679999999999865
No 96
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.40 E-value=13 Score=26.59 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=24.2
Q ss_pred CcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 208 ELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 208 ~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
..-| ||...+..+..|.---|..-||..|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 4456 898887766677766799999999984
No 97
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.28 E-value=8.9 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=25.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
.....|+-|-+.+.+++.|..+ +..||.+|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF~ 44 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLAL--DKQWHVSCFK 44 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEET--TEEECTTTCB
T ss_pred CCCCCCcCcCCeeCCCeEEEEC--CcccccccCC
Confidence 4567899999999888877765 5788888864
No 98
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=50.92 E-value=7.3 Score=30.15 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=23.9
Q ss_pred CcccccccccccCCC-eeEEe-CCCCccChhhHH
Q 023728 208 ELTCTVCLEQVNVGE-IVRSL-PCLHQLFCSSMQ 239 (278)
Q Consensus 208 ~~tCsICLEdf~~GE-~Vr~L-PC~H~FH~~CId 239 (278)
...|.||...|.+++ .|.-= .|.--||.+|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 567999999986654 44443 588889999974
No 99
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=50.88 E-value=6.7 Score=28.36 Aligned_cols=35 Identities=14% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCCcccccccccc--cCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQV--NVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf--~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.+...|.||.+.- ..++.|.-=.|.-.||..|+.+
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 5788999998764 3344444445999999999875
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=49.89 E-value=5.9 Score=28.39 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=24.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.+...|.||-.....+..|.-=-|.--||..|+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~ 50 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGI 50 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCC
Confidence 35567999987764333454445899999999864
No 101
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.13 E-value=15 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCCcccccccccccCCCeeEEe--CCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSL--PCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~L--PC~H~FH~~CId 239 (278)
+....| ||-.....|..|.-= -|..-||..|+.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 345667 898876777777766 799999999984
No 102
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.08 E-value=7.5 Score=32.05 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCCcccccccccccC-CCeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNV-GEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~-GE~Vr~LPC~H~FH~~CId 239 (278)
++..-| ||...+.+ |..|..=-|.-.||..|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcC
Confidence 466778 99988763 4456655699999999994
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=45.95 E-value=12 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHh
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLk 243 (278)
..+..|.||-+ .|+.+--=.|-..||..||++=|.
T Consensus 61 g~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~ 95 (142)
T 2lbm_A 61 GMDEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLG 95 (142)
T ss_dssp SCBCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTC
T ss_pred CCCCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCC
Confidence 45778999987 466665556999999999998653
No 104
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=44.82 E-value=4.9 Score=33.68 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=25.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHHHHHh
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLk 243 (278)
.+..|.||... |+.+..=-|.-.||..|+.+-|.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~ 36 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLT 36 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCC
Confidence 46779999853 66555556889999999977444
No 105
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.79 E-value=18 Score=26.24 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=23.9
Q ss_pred CCccccccccccc-CCCeeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVN-VGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~-~GE~Vr~LPC~H~FH~~CId 239 (278)
+..-| ||...+. .+..|.---|..-||..|+.
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 43 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG 43 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecC
Confidence 34455 9999886 45566666799999999984
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.28 E-value=12 Score=30.42 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=24.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIA 241 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~W 241 (278)
..+..|.||-+. |+.+--=.|-..||..||++=
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRN 87 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHH
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCC
Confidence 346679999964 555544458999999999984
No 107
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.53 E-value=11 Score=27.15 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=25.0
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
.....|+.|-+.+.+++.|.. -+..||.+|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a--~~~~wH~~CF~ 44 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV--NGHFFHRSCFR 44 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB--TTBCCBTTTCB
T ss_pred CCCCCCcccCCCcccceEEEE--CCCeeCCCcCE
Confidence 356789999999988887763 46789999864
No 108
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=43.09 E-value=13 Score=22.79 Aligned_cols=22 Identities=32% Similarity=0.461 Sum_probs=17.2
Q ss_pred CCChhHHHHHHHHHHHHHhccC
Q 023728 35 NSNSLAFLVTVLLLFMILNSHQ 56 (278)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (278)
=-|+-..||||++++.|.-|-|
T Consensus 9 f~NFt~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 9 FLNFTIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3477888999999988877654
No 109
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.55 E-value=26 Score=26.57 Aligned_cols=31 Identities=16% Similarity=0.431 Sum_probs=20.6
Q ss_pred CCcccccccccccCCCeeEEeC--CC-CccChhhHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLP--CL-HQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LP--C~-H~FH~~CId 239 (278)
+..-| ||-... .|+.|.-=- |. .-||..|+.
T Consensus 35 e~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 35 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CCBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT
T ss_pred CCcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC
Confidence 44456 998764 366554444 55 579999996
No 110
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=41.04 E-value=25 Score=22.50 Aligned_cols=9 Identities=33% Similarity=0.925 Sum_probs=5.5
Q ss_pred HHHHHHHhc
Q 023728 46 LLLFMILNS 54 (278)
Q Consensus 46 ~~~~~~~~~ 54 (278)
..+||||.+
T Consensus 17 ~vif~~lg~ 25 (40)
T 2l9u_A 17 VVIFMMLGG 25 (40)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCc
Confidence 346676665
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=40.24 E-value=28 Score=26.35 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=33.8
Q ss_pred CCCcccccccccccCCCeeEEeC-CCCccChhhHHHHHhcCCCC
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLP-CLHQLFCSSMQIALTHGCGN 248 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LP-C~H~FH~~CId~WLkrscg~ 248 (278)
.....|.+|.|.+++..-|..-. =.|.|.-.|-..-+++...+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~ 56 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGAT 56 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCC
Confidence 46889999999999876665332 37999999999999976443
No 112
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=38.68 E-value=11 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
.+...| ||-..+..+..|.---|..-||..|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 466678 998877644466666799999999983
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.58 E-value=6.4 Score=29.49 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=25.6
Q ss_pred CCCcccccccccccC--CCeeEEeCCCCccChhhHHHHH
Q 023728 206 EDELTCTVCLEQVNV--GEIVRSLPCLHQLFCSSMQIAL 242 (278)
Q Consensus 206 ~d~~tCsICLEdf~~--GE~Vr~LPC~H~FH~~CId~WL 242 (278)
+....|.||...-.. ++.|.-=-|...||..|+++=|
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl 52 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQV 52 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcc
Confidence 356789999976432 3444444599999999977633
No 114
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.13 E-value=8.5 Score=27.02 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=12.7
Q ss_pred cccccccccCCCeeEEeCCCCccChhhH
Q 023728 211 CTVCLEQVNVGEIVRSLPCLHQLFCSSM 238 (278)
Q Consensus 211 CsICLEdf~~GE~Vr~LPC~H~FH~~CI 238 (278)
|+.|-+.+.+++.|..+ +..||.+|.
T Consensus 3 C~~C~~~I~~~~~v~a~--~~~~H~~CF 28 (76)
T 1iml_A 3 CPKCDKEVYFAERVTSL--GKDWHRPCL 28 (76)
T ss_dssp CTTTSSBCCGGGEEEET--TEEEETTTC
T ss_pred CCCCCCEEECceEEEEC--CccccCCCC
Confidence 55555555544444433 445555543
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.66 E-value=6.8 Score=28.78 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=23.5
Q ss_pred cccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 209 LTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 209 ~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
..|.||...=..++.|.-=-|...||..|+++
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNP 58 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSS
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCC
Confidence 38899987544555555556999999999765
No 116
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=35.21 E-value=14 Score=24.73 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=22.8
Q ss_pred cccccccccccCCC-eeEEe-CCCCccChhhHH
Q 023728 209 LTCTVCLEQVNVGE-IVRSL-PCLHQLFCSSMQ 239 (278)
Q Consensus 209 ~tCsICLEdf~~GE-~Vr~L-PC~H~FH~~CId 239 (278)
-.|.||...+.+++ .|.-- .|.--||..|+.
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg 35 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG 35 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTT
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccC
Confidence 35889999887555 44444 588889999974
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.99 E-value=14 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCcccccccccccCCC-eeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVNVGE-IVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE-~Vr~LPC~H~FH~~CId 239 (278)
....| ||-..+.+|+ .|.-=.|..-||..|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg 47 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG 47 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTT
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeec
Confidence 45568 7988877775 56655698899999984
No 118
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.97 E-value=19 Score=25.16 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
....|+.|-+.+.+++.|..+ +..||.+|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~--~~~~H~~CF~ 38 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSL--GKDWHKFCLK 38 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEET--TEEEETTTCB
T ss_pred CCCCCcCCCCEeECCeEEEEC--CeEeeCCCCC
Confidence 457899999999888877644 6788888854
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=34.82 E-value=7.3 Score=30.37 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=25.1
Q ss_pred cccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 209 LTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 209 ~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
..|.||-..-.+++.+.-=-|...||..|+++
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 90 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNP 90 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSS
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCC
Confidence 47889987655666666667999999999876
No 120
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=34.59 E-value=6.9 Score=28.10 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=21.1
Q ss_pred ccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 210 TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 210 tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.|.||...=..++.|.-=-|...||..|+++
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 50 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSS
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCC
Confidence 6778876533444444335899999999875
No 121
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=33.41 E-value=16 Score=35.71 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCccccccccccc-CCCeeEEeCCCCccChhhH
Q 023728 207 DELTCTVCLEQVN-VGEIVRSLPCLHQLFCSSM 238 (278)
Q Consensus 207 d~~tCsICLEdf~-~GE~Vr~LPC~H~FH~~CI 238 (278)
.+...+||-..+. .+..|..=-|.--||..|+
T Consensus 35 ~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cv 67 (488)
T 3kv5_D 35 PPPVYCVCRQPYDVNRFMIECDICKDWFHGSCV 67 (488)
T ss_dssp CCCEETTTTEECCTTSCEEEBTTTCCEEEHHHH
T ss_pred CCCeEEeCCCcCCCCCCeEEccCCCCceeeeec
Confidence 3444449988876 4556776679999999998
No 122
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.83 E-value=34 Score=24.64 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=22.3
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
.....|..|-+.+.. +.+.. -+..||.+|..
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~a--~~~~~H~~CF~ 53 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVKA--RDKYRHPECFV 53 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEES--SSCEECTTTCC
T ss_pred CcCCCcccCCCEecc-cEEEE--CCceECccCCE
Confidence 356789999998874 44433 56889998864
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=32.57 E-value=9.9 Score=29.16 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=22.8
Q ss_pred CcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 208 ELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 208 ~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
-..|.||-..-.+...+.---|...||..|+++
T Consensus 54 C~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 86 (111)
T 2ysm_A 54 CKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP 86 (111)
T ss_dssp TCCCTTTCCCSCCTTEEECSSSCCEEEGGGSSS
T ss_pred CCcccccCccCCCCCeeECCCCCcHHhHHhcCC
Confidence 346888876644434444445899999999876
No 124
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=28.99 E-value=17 Score=25.61 Aligned_cols=31 Identities=10% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCcccccccccccCCCeeEEe--CCCCccChhhH
Q 023728 207 DELTCTVCLEQVNVGEIVRSL--PCLHQLFCSSM 238 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~L--PC~H~FH~~CI 238 (278)
+...| ||-.....|..|.-= .|..-||..|+
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 44556 898777777666543 38888999997
No 125
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.71 E-value=33 Score=24.82 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=25.2
Q ss_pred CCCcccccccccccCCCeeEEeCC-CCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPC-LHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC-~H~FH~~CId~ 240 (278)
++..-|.||.++ -.+|-+.| +-.|-..|...
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHH
Confidence 567789999998 45899999 78898888654
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=27.66 E-value=31 Score=26.51 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=23.8
Q ss_pred CCCccccccccc-ccCCCeeEEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQ-VNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEd-f~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
.+-..|.||.+. ..+++.+.-=-|...||..|+++
T Consensus 59 ~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 59 IECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp TTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSS
T ss_pred ccCCccccccCcCCCccceEEcCCCCCeeecccCCC
Confidence 444578899875 33344444445899999999765
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=27.63 E-value=16 Score=32.41 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=20.9
Q ss_pred CcccccccccccCCCeeEEeCCCCccChhhHHH
Q 023728 208 ELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQI 240 (278)
Q Consensus 208 ~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~ 240 (278)
+..|.||...=..++.+..=-|...||..|++|
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~P 206 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDP 206 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--C
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCC
Confidence 337888877544455555446899999999876
No 128
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.51 E-value=42 Score=24.23 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=22.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
....|+-|-+.+.+++.|. .-+..||.+|..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF~ 44 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLL--ANQQVFHISCFR 44 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEE--CSSSEEETTTCB
T ss_pred CCCcCccCCCccCCceeEE--ECCCEECCCCCe
Confidence 4668999988888777653 456778888754
No 129
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.24 E-value=34 Score=24.06 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=21.6
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
....|+-|-+.+.. +.+.. -+..||.+|..
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a--~~~~~H~~CF~ 43 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFVKL--RDRHRHPECYV 43 (79)
T ss_dssp CCCCCSSSCCCCCS-SCEEC--SSCEECTTTTS
T ss_pred CCCccccCCCCccC-cEEEE--CcceeCcCcCe
Confidence 46789999998874 44433 46889988864
No 130
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=25.93 E-value=32 Score=24.59 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=23.7
Q ss_pred CCcccccccccccC-CCeeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVNV-GEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~-GE~Vr~LPC~H~FH~~CId 239 (278)
....-.||-..+.+ +..|.---|.--||..|+.
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg 41 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVG 41 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CCeeEEECCCcCCCCCCEEEcCCCCCCEeccccc
Confidence 44455599887753 4566656699999999993
No 131
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.88 E-value=34 Score=24.49 Aligned_cols=31 Identities=16% Similarity=0.431 Sum_probs=20.7
Q ss_pred CCcccccccccccCCCeeEEeC--CC-CccChhhHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLP--CL-HQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LP--C~-H~FH~~CId 239 (278)
+..-| ||-... .|+.|.-=- |. .-||..|+.
T Consensus 15 ~~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp SCCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT
T ss_pred CCCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC
Confidence 45556 898754 366554444 55 689999996
No 132
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=25.20 E-value=13 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHHHHHh
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIALT 243 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WLk 243 (278)
..+..|.||.. .|+.+..=-|...||..|+.+-|.
T Consensus 5 ~~~~~C~~C~~---~g~ll~Cd~C~~~~H~~Cl~p~l~ 39 (207)
T 3u5n_A 5 PNEDWCAVCQN---GGDLLCCEKCPKVFHLTCHVPTLL 39 (207)
T ss_dssp SSCSSBTTTCC---CEEEEECSSSSCEECTTTSSSCCS
T ss_pred CCCCCCCCCCC---CCceEEcCCCCCccCCccCCCCCC
Confidence 35677999984 355444445889999999976443
No 133
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.57 E-value=29 Score=28.04 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=24.2
Q ss_pred CCCccccccccccc--CCCeeEEeCCCCccChhh
Q 023728 206 EDELTCTVCLEQVN--VGEIVRSLPCLHQLFCSS 237 (278)
Q Consensus 206 ~d~~tCsICLEdf~--~GE~Vr~LPC~H~FH~~C 237 (278)
.++..|.+|...|. .+-...-..|.|.+-..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 36789999999993 344556667999988766
No 134
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.09 E-value=12 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=21.3
Q ss_pred ccccccccccCCCeeEEeCCCCccChhhHHHHH
Q 023728 210 TCTVCLEQVNVGEIVRSLPCLHQLFCSSMQIAL 242 (278)
Q Consensus 210 tCsICLEdf~~GE~Vr~LPC~H~FH~~CId~WL 242 (278)
.|.||-..-..++.|.-=-|...||..|+++=|
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL 60 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL 60 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCC
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcc
Confidence 566666554444444433588999999987644
No 135
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.60 E-value=37 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCCcccccccccccCCCeeEEe--CCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSL--PCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~L--PC~H~FH~~CId 239 (278)
..+..|.||.+ .|+.|.-= -|-..||..|+.
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCc
Confidence 56778999983 45554443 488999999997
No 136
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.22 E-value=24 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=20.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 207 DELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 207 d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
....|+.|-+.+.+++.+.. -+..||.+|..
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a--~~~~~H~~CF~ 36 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQC--DGRSFHRCCFL 36 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEE--TTEEEESSSEE
T ss_pred CCCcCcCcCccccCceeEEe--CCcccccccCc
Confidence 35678888888877776544 35677777753
No 137
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.31 E-value=13 Score=23.49 Aligned_cols=16 Identities=13% Similarity=0.698 Sum_probs=12.5
Q ss_pred CCcccccccccccCCC
Q 023728 207 DELTCTVCLEQVNVGE 222 (278)
Q Consensus 207 d~~tCsICLEdf~~GE 222 (278)
+.-.|+||+.++..-+
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4678999999986544
No 138
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.94 E-value=67 Score=24.91 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCeeEEeCCCCccChhhHH
Q 023728 206 EDELTCTVCLEQVNVGEIVRSLPCLHQLFCSSMQ 239 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~Vr~LPC~H~FH~~CId 239 (278)
.....|+-|-+.+.+++.+..+ +..||.+|..
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF~ 90 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAM--DSYWHSRCLK 90 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEET--TEEEETTTSB
T ss_pred ccCCcCcCCCCCcCCcEEEEeC--CcEEcccccC
Confidence 3467899999998876556554 6788988853
No 139
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.53 E-value=1e+02 Score=22.39 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCCee-EEeCCCCccChhhHHH
Q 023728 206 EDELTCTVCLEQVNVGEIV-RSLPCLHQLFCSSMQI 240 (278)
Q Consensus 206 ~d~~tCsICLEdf~~GE~V-r~LPC~H~FH~~CId~ 240 (278)
.+...|.+|...|..-..- .---|+++|-..|-..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 5677899999999754322 2224899999988654
Done!