Query 023729
Match_columns 278
No_of_seqs 161 out of 244
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:14:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10186 Atg14: UV radiation r 100.0 1.4E-39 3.1E-44 298.5 26.1 233 2-273 62-301 (302)
2 KOG2896 UV radiation resistanc 100.0 4.5E-35 9.7E-40 273.8 22.6 209 31-272 120-334 (377)
3 KOG4398 Predicted coiled-coil 99.4 2E-11 4.4E-16 111.5 16.9 88 152-273 185-274 (359)
4 PF04111 APG6: Autophagy prote 99.0 1.6E-08 3.5E-13 95.5 18.0 99 128-249 150-256 (314)
5 KOG2751 Beclin-like protein [S 98.1 0.00011 2.4E-09 71.4 16.3 98 128-249 283-385 (447)
6 COG4942 Membrane-bound metallo 92.3 2.2 4.7E-05 42.2 12.0 88 2-98 44-131 (420)
7 PF10186 Atg14: UV radiation r 91.8 3.4 7.3E-05 37.7 12.2 46 10-55 63-108 (302)
8 PRK11637 AmiB activator; Provi 91.7 3.8 8.3E-05 40.2 13.2 55 38-94 82-136 (428)
9 PRK10884 SH3 domain-containing 87.4 12 0.00026 33.5 11.8 54 2-55 92-145 (206)
10 PRK11637 AmiB activator; Provi 82.2 25 0.00054 34.5 12.4 11 77-87 164-174 (428)
11 PRK09174 F0F1 ATP synthase sub 82.2 36 0.00079 30.3 12.9 89 2-90 79-171 (204)
12 KOG0980 Actin-binding protein 81.5 27 0.00059 37.7 12.7 71 2-72 357-431 (980)
13 PF11180 DUF2968: Protein of u 78.3 49 0.0011 29.5 11.9 74 8-81 106-181 (192)
14 PRK10884 SH3 domain-containing 78.1 51 0.0011 29.5 11.9 56 8-63 91-146 (206)
15 PRK09039 hypothetical protein; 77.7 52 0.0011 31.6 12.7 43 22-64 135-177 (343)
16 TIGR03319 YmdA_YtgF conserved 77.6 57 0.0012 33.2 13.5 10 129-138 203-212 (514)
17 PRK12704 phosphodiesterase; Pr 77.1 60 0.0013 33.0 13.5 10 230-239 382-391 (520)
18 TIGR01069 mutS2 MutS2 family p 73.6 56 0.0012 34.9 12.7 24 229-253 701-724 (771)
19 TIGR03319 YmdA_YtgF conserved 73.2 71 0.0015 32.5 12.9 24 24-47 97-120 (514)
20 PF08317 Spc7: Spc7 kinetochor 72.7 70 0.0015 30.3 12.1 14 85-98 285-298 (325)
21 KOG2896 UV radiation resistanc 71.1 87 0.0019 30.6 12.2 63 31-95 83-162 (377)
22 PF12777 MT: Microtubule-bindi 71.0 40 0.00087 32.2 10.1 84 4-87 229-313 (344)
23 KOG2391 Vacuolar sorting prote 70.0 25 0.00055 33.9 8.2 53 11-63 208-260 (365)
24 PRK00106 hypothetical protein; 69.2 99 0.0022 31.7 12.9 9 72-80 177-185 (535)
25 PRK00106 hypothetical protein; 69.0 1.3E+02 0.0027 31.0 13.5 12 128-139 223-234 (535)
26 TIGR03185 DNA_S_dndD DNA sulfu 67.7 68 0.0015 33.3 11.7 23 72-94 273-295 (650)
27 PRK00409 recombination and DNA 67.6 86 0.0019 33.6 12.5 17 230-246 713-729 (782)
28 PF05335 DUF745: Protein of un 67.1 91 0.002 27.6 12.4 45 38-84 123-167 (188)
29 TIGR01069 mutS2 MutS2 family p 65.9 1.1E+02 0.0024 32.7 13.0 26 12-37 527-552 (771)
30 CHL00118 atpG ATP synthase CF0 65.1 83 0.0018 26.4 12.8 40 3-42 49-88 (156)
31 PRK13454 F0F1 ATP synthase sub 64.6 95 0.0021 26.9 12.8 42 2-43 57-98 (181)
32 TIGR03752 conj_TIGR03752 integ 64.6 58 0.0013 32.9 9.9 20 45-64 105-124 (472)
33 PF10267 Tmemb_cc2: Predicted 63.8 1.6E+02 0.0034 29.2 14.2 25 155-179 343-367 (395)
34 COG1579 Zn-ribbon protein, pos 63.7 1.2E+02 0.0026 27.9 11.6 33 3-35 45-77 (239)
35 PF11559 ADIP: Afadin- and alp 62.8 89 0.0019 25.9 13.2 54 12-65 61-114 (151)
36 PRK13428 F0F1 ATP synthase sub 62.6 1.7E+02 0.0037 29.1 12.9 35 3-37 28-62 (445)
37 PRK12705 hypothetical protein; 62.1 1.2E+02 0.0025 31.1 11.7 12 170-181 294-305 (508)
38 PF00038 Filament: Intermediat 61.8 1.3E+02 0.0029 27.7 13.0 89 2-92 60-148 (312)
39 PF12718 Tropomyosin_1: Tropom 61.3 98 0.0021 26.0 11.5 63 1-63 5-67 (143)
40 PRK14474 F0F1 ATP synthase sub 61.3 1.3E+02 0.0029 27.5 13.0 39 3-41 32-70 (250)
41 TIGR02449 conserved hypothetic 61.2 64 0.0014 23.8 8.9 49 5-56 2-53 (65)
42 PRK00409 recombination and DNA 61.1 1.3E+02 0.0029 32.2 12.5 37 3-39 530-566 (782)
43 KOG0996 Structural maintenance 61.1 62 0.0013 36.2 10.0 35 31-65 563-597 (1293)
44 COG4372 Uncharacterized protei 59.9 1.9E+02 0.004 28.8 12.1 11 215-225 380-390 (499)
45 PF05667 DUF812: Protein of un 59.7 1.3E+02 0.0028 31.3 11.7 25 68-92 408-432 (594)
46 TIGR02492 flgK_ends flagellar 59.0 1.5E+02 0.0033 27.9 11.4 24 75-98 194-217 (322)
47 PRK06665 flgK flagellar hook-a 57.3 1.2E+02 0.0027 31.5 11.3 25 74-98 204-228 (627)
48 COG3883 Uncharacterized protei 56.8 47 0.001 31.0 7.3 45 4-48 67-111 (265)
49 COG1579 Zn-ribbon protein, pos 56.5 1.6E+02 0.0036 27.0 12.4 7 131-137 202-208 (239)
50 PF09726 Macoilin: Transmembra 56.3 1.8E+02 0.0038 30.9 12.3 13 31-43 470-482 (697)
51 COG4026 Uncharacterized protei 56.2 1.2E+02 0.0027 27.9 9.6 33 31-63 159-191 (290)
52 PF03148 Tektin: Tektin family 56.2 1.7E+02 0.0037 28.4 11.5 56 1-56 249-304 (384)
53 COG4238 Murein lipoprotein [Ce 56.0 82 0.0018 24.0 7.1 39 4-42 26-64 (78)
54 PF07798 DUF1640: Protein of u 55.2 1.4E+02 0.003 25.7 11.8 75 9-88 72-158 (177)
55 PF12128 DUF3584: Protein of u 55.2 1.8E+02 0.004 32.6 12.8 21 155-175 852-872 (1201)
56 PF11570 E2R135: Coiled-coil r 54.8 75 0.0016 26.6 7.4 54 6-59 4-57 (136)
57 PF10168 Nup88: Nuclear pore c 54.3 1.4E+02 0.0031 31.7 11.3 8 155-162 689-696 (717)
58 PF10498 IFT57: Intra-flagella 54.2 2E+02 0.0043 28.0 11.5 15 70-84 303-317 (359)
59 TIGR02680 conserved hypothetic 53.1 2.1E+02 0.0046 32.6 13.0 20 4-23 743-762 (1353)
60 PRK06231 F0F1 ATP synthase sub 52.6 1.7E+02 0.0036 26.0 12.9 38 3-40 75-112 (205)
61 PRK13453 F0F1 ATP synthase sub 52.0 1.5E+02 0.0033 25.3 12.9 42 2-43 44-85 (173)
62 TIGR00237 xseA exodeoxyribonuc 51.5 2.3E+02 0.0051 28.0 11.8 14 3-16 277-290 (432)
63 PRK07352 F0F1 ATP synthase sub 51.4 1.5E+02 0.0033 25.2 12.9 41 2-42 45-85 (174)
64 PF09726 Macoilin: Transmembra 50.9 3.1E+02 0.0067 29.2 13.0 30 8-37 543-572 (697)
65 PRK08475 F0F1 ATP synthase sub 50.3 1.6E+02 0.0035 25.1 12.6 39 3-41 49-87 (167)
66 KOG1029 Endocytic adaptor prot 49.6 2.7E+02 0.0059 30.2 12.1 12 160-171 485-496 (1118)
67 PRK07191 flgK flagellar hook-a 49.5 1.9E+02 0.004 28.8 10.8 24 75-98 193-216 (456)
68 PRK14475 F0F1 ATP synthase sub 49.2 1.6E+02 0.0036 24.9 12.8 41 2-42 36-76 (167)
69 PRK14473 F0F1 ATP synthase sub 48.8 1.6E+02 0.0035 24.7 12.9 39 3-41 35-73 (164)
70 KOG0971 Microtubule-associated 48.6 2E+02 0.0043 31.7 11.0 59 5-63 936-994 (1243)
71 KOG0994 Extracellular matrix g 48.6 1.3E+02 0.0028 34.1 9.8 47 10-56 1542-1588(1758)
72 PRK07521 flgK flagellar hook-a 48.5 2.2E+02 0.0047 28.6 11.1 77 16-98 135-211 (483)
73 PF07106 TBPIP: Tat binding pr 48.3 1.7E+02 0.0037 24.8 9.9 22 12-33 81-102 (169)
74 PF04728 LPP: Lipoprotein leuc 48.2 1E+02 0.0022 22.1 8.1 24 10-33 10-33 (56)
75 PF00038 Filament: Intermediat 48.2 2.2E+02 0.0049 26.2 13.7 19 70-88 264-282 (312)
76 PRK11281 hypothetical protein; 48.2 1.7E+02 0.0037 32.8 11.0 30 5-34 75-104 (1113)
77 PF13851 GAS: Growth-arrest sp 47.9 2E+02 0.0043 25.5 12.1 33 1-33 39-71 (201)
78 COG4985 ABC-type phosphate tra 47.8 2.3E+02 0.0051 26.2 10.3 79 2-85 163-245 (289)
79 PRK13460 F0F1 ATP synthase sub 47.0 1.8E+02 0.0039 24.8 12.9 38 3-40 43-80 (173)
80 PRK00286 xseA exodeoxyribonucl 46.8 2.6E+02 0.0057 27.4 11.3 8 88-95 388-395 (438)
81 PF06698 DUF1192: Protein of u 46.8 70 0.0015 23.1 5.4 27 11-37 22-48 (59)
82 PRK08147 flgK flagellar hook-a 46.6 2.2E+02 0.0048 28.9 11.0 24 75-98 196-219 (547)
83 KOG1853 LIS1-interacting prote 46.5 2.6E+02 0.0055 26.3 11.3 27 26-52 103-129 (333)
84 TIGR03752 conj_TIGR03752 integ 46.5 2.5E+02 0.0053 28.5 10.9 14 240-253 344-357 (472)
85 PF11932 DUF3450: Protein of u 46.4 2.2E+02 0.0049 25.7 12.2 29 20-48 41-69 (251)
86 PRK13455 F0F1 ATP synthase sub 46.2 1.9E+02 0.0042 24.8 13.0 39 3-41 54-92 (184)
87 TIGR03321 alt_F1F0_F0_B altern 45.6 2.3E+02 0.005 25.6 12.9 37 3-39 32-68 (246)
88 CHL00019 atpF ATP synthase CF0 45.6 2E+02 0.0043 24.8 12.9 39 3-41 51-89 (184)
89 PF07926 TPR_MLP1_2: TPR/MLP1/ 45.6 1.7E+02 0.0036 23.9 8.9 37 24-60 59-95 (132)
90 PRK10803 tol-pal system protei 45.4 77 0.0017 29.2 6.9 15 76-90 86-100 (263)
91 PRK13461 F0F1 ATP synthase sub 45.2 1.8E+02 0.004 24.3 12.9 40 2-41 31-70 (159)
92 PRK08476 F0F1 ATP synthase sub 44.9 1.8E+02 0.0039 24.1 12.8 39 2-40 33-71 (141)
93 PF12128 DUF3584: Protein of u 44.7 3.3E+02 0.0071 30.7 12.8 50 2-51 606-655 (1201)
94 PF15290 Syntaphilin: Golgi-lo 44.6 1.4E+02 0.003 28.3 8.3 33 3-38 82-114 (305)
95 TIGR00998 8a0101 efflux pump m 44.1 2.6E+02 0.0057 25.8 12.1 17 6-22 83-99 (334)
96 TIGR02169 SMC_prok_A chromosom 43.9 3.8E+02 0.0083 29.1 12.9 8 155-162 540-547 (1164)
97 PLN03086 PRLI-interacting fact 43.9 1.7E+02 0.0037 30.3 9.6 14 128-141 173-186 (567)
98 PRK07739 flgK flagellar hook-a 43.4 3.5E+02 0.0076 27.3 11.8 22 75-96 205-226 (507)
99 PRK14472 F0F1 ATP synthase sub 43.2 2.1E+02 0.0045 24.4 12.9 38 3-40 45-82 (175)
100 PRK14471 F0F1 ATP synthase sub 43.1 2E+02 0.0043 24.1 12.9 41 3-43 35-75 (164)
101 PRK07353 F0F1 ATP synthase sub 42.9 1.8E+02 0.0039 23.5 12.9 41 2-42 31-71 (140)
102 TIGR02168 SMC_prok_B chromosom 42.7 3.9E+02 0.0085 28.9 12.7 9 84-92 934-942 (1179)
103 PF10168 Nup88: Nuclear pore c 42.4 4.4E+02 0.0096 28.1 12.7 35 52-88 589-623 (717)
104 KOG2264 Exostosin EXT1L [Signa 42.2 1.4E+02 0.003 31.2 8.5 16 24-39 96-111 (907)
105 PRK06975 bifunctional uroporph 42.2 3.7E+02 0.008 28.2 12.0 25 242-266 607-631 (656)
106 PF04728 LPP: Lipoprotein leuc 42.1 1.3E+02 0.0028 21.6 7.3 46 9-54 2-47 (56)
107 KOG0837 Transcriptional activa 42.0 1.1E+02 0.0024 28.7 7.1 15 72-86 252-266 (279)
108 KOG2391 Vacuolar sorting prote 41.9 1.2E+02 0.0027 29.4 7.7 50 1-50 219-268 (365)
109 PLN03086 PRLI-interacting fact 41.9 1.4E+02 0.003 31.0 8.6 21 16-36 6-26 (567)
110 TIGR03185 DNA_S_dndD DNA sulfu 41.8 3.1E+02 0.0066 28.5 11.3 7 218-224 575-581 (650)
111 PF08614 ATG16: Autophagy prot 41.7 2.4E+02 0.0051 24.6 9.7 41 4-44 110-150 (194)
112 COG1256 FlgK Flagellar hook-as 40.2 3.1E+02 0.0068 28.3 10.9 25 75-99 197-221 (552)
113 PRK06945 flgK flagellar hook-a 40.0 3.2E+02 0.0068 28.7 11.1 79 14-98 139-218 (651)
114 KOG0243 Kinesin-like protein [ 39.6 5.1E+02 0.011 29.0 12.7 18 75-92 535-552 (1041)
115 PF05278 PEARLI-4: Arabidopsis 39.1 3.3E+02 0.0072 25.5 11.1 25 31-55 207-231 (269)
116 COG4942 Membrane-bound metallo 38.6 3.4E+02 0.0074 27.1 10.4 51 3-53 52-102 (420)
117 KOG4196 bZIP transcription fac 38.5 2.3E+02 0.005 23.8 7.9 34 31-65 50-83 (135)
118 KOG1962 B-cell receptor-associ 38.3 1.6E+02 0.0034 26.7 7.5 46 26-71 153-199 (216)
119 PF07321 YscO: Type III secret 38.3 2.5E+02 0.0055 23.9 9.1 49 5-53 69-117 (152)
120 KOG1103 Predicted coiled-coil 38.0 4.1E+02 0.0088 26.2 10.7 38 18-55 136-173 (561)
121 KOG0994 Extracellular matrix g 38.0 5.9E+02 0.013 29.2 12.7 14 236-249 1734-1747(1758)
122 KOG0250 DNA repair protein RAD 37.7 5E+02 0.011 29.1 12.2 37 12-48 318-354 (1074)
123 COG3707 AmiR Response regulato 37.6 1.2E+02 0.0026 27.0 6.5 20 18-37 126-145 (194)
124 PRK10476 multidrug resistance 37.0 3.6E+02 0.0078 25.3 12.0 10 184-193 277-286 (346)
125 KOG1899 LAR transmembrane tyro 37.0 4.2E+02 0.0091 28.1 11.0 34 4-37 133-166 (861)
126 KOG0999 Microtubule-associated 37.0 4E+02 0.0086 27.9 10.7 80 5-90 95-174 (772)
127 KOG0161 Myosin class II heavy 36.7 4.7E+02 0.01 31.3 12.5 56 2-57 1082-1137(1930)
128 PRK08032 fliD flagellar cappin 36.5 1.7E+02 0.0036 29.3 8.2 52 11-62 407-458 (462)
129 PRK06799 flgK flagellar hook-a 36.5 3.5E+02 0.0076 26.7 10.4 23 75-97 196-218 (431)
130 KOG2077 JNK/SAPK-associated pr 36.1 2.7E+02 0.0058 29.2 9.4 35 2-36 342-376 (832)
131 KOG2129 Uncharacterized conser 35.2 4.2E+02 0.009 26.7 10.3 11 79-89 306-316 (552)
132 PRK12714 flgK flagellar hook-a 35.2 3.9E+02 0.0084 27.9 10.8 76 15-98 139-214 (624)
133 PF12126 DUF3583: Protein of u 35.1 1.5E+02 0.0033 28.3 7.0 60 33-92 1-66 (324)
134 PF12277 DUF3618: Protein of u 34.1 1.5E+02 0.0033 20.1 6.4 27 19-45 5-31 (49)
135 KOG0250 DNA repair protein RAD 33.9 5E+02 0.011 29.1 11.5 18 230-247 658-675 (1074)
136 PRK04863 mukB cell division pr 33.9 4.2E+02 0.0091 30.8 11.5 18 44-61 1026-1043(1486)
137 PHA02562 46 endonuclease subun 33.7 4.9E+02 0.011 26.0 11.1 82 1-84 321-402 (562)
138 COG4372 Uncharacterized protei 33.5 5E+02 0.011 25.9 11.5 16 77-92 156-171 (499)
139 PRK11546 zraP zinc resistance 33.2 1.8E+02 0.004 24.6 6.7 22 70-91 98-119 (143)
140 PRK12715 flgK flagellar hook-a 33.1 4.2E+02 0.0091 27.8 10.7 75 14-98 138-212 (649)
141 PRK10361 DNA recombination pro 32.5 5.5E+02 0.012 26.1 13.2 14 163-176 281-294 (475)
142 PRK09859 multidrug efflux syst 32.5 3.3E+02 0.0072 26.0 9.3 6 128-133 199-204 (385)
143 PRK06568 F0F1 ATP synthase sub 32.3 3.2E+02 0.0069 23.3 13.0 35 3-37 31-65 (154)
144 PRK06798 fliD flagellar cappin 32.1 2.1E+02 0.0045 28.5 8.0 48 10-57 379-426 (440)
145 KOG2685 Cystoskeletal protein 31.8 5.3E+02 0.012 25.7 11.0 55 2-56 277-331 (421)
146 PF08317 Spc7: Spc7 kinetochor 31.7 4.5E+02 0.0097 24.8 13.3 33 10-42 166-198 (325)
147 PRK06569 F0F1 ATP synthase sub 31.7 3.3E+02 0.0072 23.3 10.4 40 3-42 37-76 (155)
148 PRK05759 F0F1 ATP synthase sub 31.5 2.9E+02 0.0064 22.7 12.9 39 3-41 31-69 (156)
149 COG4582 Uncharacterized protei 31.5 3.6E+02 0.0078 24.5 8.5 92 4-96 53-163 (244)
150 PF00430 ATP-synt_B: ATP synth 31.2 2.6E+02 0.0057 22.0 9.4 84 6-89 29-116 (132)
151 PRK15396 murein lipoprotein; P 31.2 2.4E+02 0.0052 21.5 7.0 25 9-33 31-55 (78)
152 PF07795 DUF1635: Protein of u 30.8 2.6E+02 0.0056 25.4 7.6 14 24-37 26-39 (214)
153 PRK09973 putative outer membra 30.8 2.6E+02 0.0056 21.7 6.9 16 46-61 53-68 (85)
154 PF11932 DUF3450: Protein of u 30.4 4.1E+02 0.0088 24.0 13.1 28 8-35 40-67 (251)
155 KOG0971 Microtubule-associated 29.8 5.8E+02 0.013 28.4 10.9 18 259-276 711-728 (1243)
156 PF10498 IFT57: Intra-flagella 29.7 4.8E+02 0.01 25.4 9.8 20 15-34 239-258 (359)
157 PF08657 DASH_Spc34: DASH comp 29.6 1.2E+02 0.0027 28.1 5.6 36 2-37 179-214 (259)
158 KOG3091 Nuclear pore complex, 29.4 2.3E+02 0.005 28.8 7.7 7 88-94 437-443 (508)
159 KOG3478 Prefoldin subunit 6, K 29.2 2.4E+02 0.0052 23.1 6.4 44 2-45 64-111 (120)
160 PF11559 ADIP: Afadin- and alp 29.1 3.3E+02 0.0071 22.5 12.1 58 6-63 48-105 (151)
161 PF12352 V-SNARE_C: Snare regi 28.6 2.1E+02 0.0046 20.1 8.9 50 13-62 11-60 (66)
162 PF08826 DMPK_coil: DMPK coile 28.4 1.6E+02 0.0034 21.4 4.7 23 19-41 30-52 (61)
163 KOG0977 Nuclear envelope prote 28.2 6.9E+02 0.015 25.9 11.9 28 6-33 102-129 (546)
164 PF12072 DUF3552: Domain of un 28.1 4.1E+02 0.0089 23.3 12.8 33 24-56 71-103 (201)
165 TIGR02680 conserved hypothetic 27.9 9.4E+02 0.02 27.6 13.0 9 85-93 986-994 (1353)
166 PF06698 DUF1192: Protein of u 27.8 1.9E+02 0.0042 20.8 5.1 27 5-31 23-49 (59)
167 PF05667 DUF812: Protein of un 27.5 7.3E+02 0.016 25.9 12.6 21 9-29 334-354 (594)
168 PRK08471 flgK flagellar hook-a 27.5 7.1E+02 0.015 25.9 11.2 24 75-98 200-223 (613)
169 PF09730 BicD: Microtubule-ass 27.2 8E+02 0.017 26.3 11.7 20 230-249 304-323 (717)
170 PRK10559 p-hydroxybenzoic acid 27.1 4.4E+02 0.0096 24.5 9.0 9 184-192 222-230 (310)
171 KOG0976 Rho/Rac1-interacting s 26.9 5.2E+02 0.011 28.4 9.9 56 5-60 370-425 (1265)
172 PF09738 DUF2051: Double stran 26.5 5.2E+02 0.011 24.6 9.2 32 15-46 110-141 (302)
173 PRK06664 fliD flagellar hook-a 26.3 2.8E+02 0.0062 29.2 8.1 54 10-63 600-653 (661)
174 PF15369 KIAA1328: Uncharacter 26.2 6E+02 0.013 24.5 10.9 33 9-41 7-39 (328)
175 PF10191 COG7: Golgi complex c 26.2 5E+02 0.011 27.8 10.0 19 46-64 145-163 (766)
176 PF06785 UPF0242: Uncharacteri 26.1 6.3E+02 0.014 24.7 10.7 30 2-31 91-120 (401)
177 PF07795 DUF1635: Protein of u 25.8 4E+02 0.0087 24.1 7.9 38 22-59 17-54 (214)
178 PRK09173 F0F1 ATP synthase sub 25.5 4E+02 0.0086 22.2 12.8 39 3-41 29-67 (159)
179 TIGR01144 ATP_synt_b ATP synth 25.4 3.7E+02 0.0081 21.9 12.9 40 2-41 21-60 (147)
180 TIGR03545 conserved hypothetic 25.4 7.6E+02 0.017 25.5 12.0 17 234-250 471-487 (555)
181 PRK04863 mukB cell division pr 24.9 1.1E+03 0.024 27.5 12.9 19 234-252 808-826 (1486)
182 cd07591 BAR_Rvs161p The Bin/Am 24.9 5.1E+02 0.011 23.2 10.6 82 12-95 101-193 (224)
183 PRK10869 recombination and rep 24.7 7.7E+02 0.017 25.2 11.1 28 24-51 320-347 (553)
184 KOG0977 Nuclear envelope prote 24.6 8E+02 0.017 25.4 11.8 42 10-51 99-140 (546)
185 KOG4643 Uncharacterized coiled 24.6 8.4E+02 0.018 27.4 11.1 20 230-249 816-835 (1195)
186 KOG3091 Nuclear pore complex, 24.3 5.3E+02 0.012 26.3 9.2 15 8-22 353-367 (508)
187 PF08700 Vps51: Vps51/Vps67; 24.0 3E+02 0.0064 20.2 8.9 26 12-37 21-46 (87)
188 PRK10361 DNA recombination pro 24.0 7.7E+02 0.017 25.0 13.0 16 78-93 164-179 (475)
189 TIGR03495 phage_LysB phage lys 23.9 4.4E+02 0.0095 22.1 10.3 37 18-54 20-56 (135)
190 PF07889 DUF1664: Protein of u 23.7 4.2E+02 0.0092 21.9 11.5 46 11-56 44-89 (126)
191 PF08285 DPM3: Dolichol-phosph 23.7 89 0.0019 24.4 3.0 20 17-36 68-87 (91)
192 PRK09578 periplasmic multidrug 23.6 5.9E+02 0.013 24.3 9.3 6 128-133 201-206 (385)
193 PF04949 Transcrip_act: Transc 23.4 4.8E+02 0.01 22.5 11.8 55 4-58 60-118 (159)
194 PF04949 Transcrip_act: Transc 23.3 4.9E+02 0.011 22.4 9.9 27 2-28 51-77 (159)
195 PF10819 DUF2564: Protein of u 23.3 3.5E+02 0.0075 20.8 5.9 14 22-35 34-47 (79)
196 KOG2033 Low density lipoprotei 23.2 2.3E+02 0.0049 30.3 6.5 26 12-37 19-44 (863)
197 TIGR01005 eps_transp_fam exopo 23.1 8.9E+02 0.019 25.4 12.8 14 237-250 562-575 (754)
198 PF11887 DUF3407: Protein of u 23.0 6E+02 0.013 23.4 9.1 73 10-91 31-103 (267)
199 PF12210 Hrs_helical: Hepatocy 22.8 3.9E+02 0.0085 21.2 8.2 35 21-55 50-87 (96)
200 PF08614 ATG16: Autophagy prot 22.8 5E+02 0.011 22.5 11.2 38 11-48 110-147 (194)
201 PF02344 Myc-LZ: Myc leucine z 22.8 2.1E+02 0.0046 18.1 4.0 18 23-40 10-27 (32)
202 PF13125 DUF3958: Protein of u 22.7 2.7E+02 0.0057 22.3 5.4 30 54-85 68-97 (99)
203 TIGR00634 recN DNA repair prot 22.5 7E+02 0.015 25.4 10.0 9 187-195 463-471 (563)
204 PF05384 DegS: Sensor protein 22.4 5E+02 0.011 22.3 12.6 38 6-43 30-67 (159)
205 COG5124 Protein predicted to b 22.3 4.1E+02 0.0088 23.7 7.0 36 4-39 76-111 (209)
206 COG1196 Smc Chromosome segrega 22.3 1.1E+03 0.024 26.3 12.7 9 187-195 1089-1097(1163)
207 KOG2264 Exostosin EXT1L [Signa 22.1 4.8E+02 0.011 27.4 8.4 20 45-64 107-126 (907)
208 TIGR03545 conserved hypothetic 21.9 8.9E+02 0.019 25.0 12.1 17 80-96 259-275 (555)
209 PF12352 V-SNARE_C: Snare regi 21.8 2.9E+02 0.0063 19.3 8.5 51 4-54 9-59 (66)
210 PF00435 Spectrin: Spectrin re 21.7 3.1E+02 0.0067 19.6 6.3 14 70-83 89-102 (105)
211 PF13870 DUF4201: Domain of un 21.4 5.1E+02 0.011 22.0 11.2 23 15-37 47-69 (177)
212 PF03962 Mnd1: Mnd1 family; I 21.3 5.6E+02 0.012 22.4 10.4 26 8-33 67-92 (188)
213 PF05791 Bacillus_HBL: Bacillu 21.3 5.4E+02 0.012 22.2 9.1 67 13-81 106-176 (184)
214 PF05546 She9_MDM33: She9 / Md 21.3 4.3E+02 0.0093 23.8 7.2 32 18-49 33-64 (207)
215 PRK10476 multidrug resistance 21.0 6.9E+02 0.015 23.3 12.2 17 5-21 88-104 (346)
216 PF13874 Nup54: Nucleoporin co 21.0 4.8E+02 0.01 21.5 8.2 21 3-23 37-57 (141)
217 cd07643 I-BAR_IMD_MIM Inverse 21.0 6.6E+02 0.014 23.1 10.4 43 49-95 158-200 (231)
218 PF05546 She9_MDM33: She9 / Md 20.8 4.4E+02 0.0095 23.8 7.1 26 13-38 35-60 (207)
219 PRK00247 putative inner membra 20.8 2.5E+02 0.0054 28.1 6.1 31 12-42 322-352 (429)
220 PF11598 COMP: Cartilage oligo 20.3 2.9E+02 0.0064 18.8 5.4 35 13-47 4-38 (45)
221 KOG0996 Structural maintenance 20.2 1E+03 0.022 27.2 10.8 52 4-55 501-552 (1293)
222 PF11652 DUF3259: Protein of u 20.2 4.2E+02 0.0091 20.5 5.9 24 14-37 7-31 (84)
223 KOG4673 Transcription factor T 20.2 1E+03 0.022 25.7 10.4 16 18-33 524-539 (961)
224 PF03082 MAGSP: Male accessory 20.1 5.5E+02 0.012 23.5 7.5 48 18-65 146-193 (264)
No 1
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=100.00 E-value=1.4e-39 Score=298.51 Aligned_cols=233 Identities=30% Similarity=0.455 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh-----hchHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK-----GYGHLQKLQKM 76 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~-----~~~rL~~l~~~ 76 (278)
+.++++.+.|+..++..++.++++|++.|+++...+..+..+++++.+.....++....+.... ...++..++.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999888833322222222222111 14456689999
Q ss_pred HHHHHHHHHHHHHhhccccccCCCCcccccccCCCCCCCCCCCCCCCCCCcceEEeceecCCCcccccCCCCChhhHHHH
Q 023729 77 LRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRS 156 (278)
Q Consensus 77 l~~rr~~lv~el~~IypI~~~~~p~~~~~~~~~p~~~~~g~~~~~~~~~~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~i 156 (278)
+..+|..++.+|..||||+++..++ ..+ +.....|+|+|++||+. ..|...++ +.|
T Consensus 142 l~~~r~~l~~~l~~ifpI~~~~~~~------------~~~------~~~~~~~~I~~~~lp~~-----~~~~~~~~-~~i 197 (302)
T PF10186_consen 142 LARRRRQLIQELSEIFPIEQVSSPR------------RPS------DSSSSEYTICGLPLPNS-----RDFNSLPD-EEI 197 (302)
T ss_pred HHHHHHHHHHHHHHHhCceeecccc------------cCC------CCCCCCeeecCcccCCC-----cccccCCH-HHH
Confidence 9999999999999999998762100 000 00145899999999995 23454544 689
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcccccCCcceeecCCCCCCCCCCccccccccCCCCCcccCcccCCCChhhHHHHHH
Q 023729 157 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVF 236 (278)
Q Consensus 157 saaLgyvahlv~lls~yL~v~LpYpi~~~gSrSyI~d~~~~~~~~~~~~~~~~~~~~~~~~~fPLf~~~~d~~~F~yav~ 236 (278)
+||||||||+|.++|+||+|||||||.+.||+|+|.| .+. ....+..++.+.++.++++|+|||+
T Consensus 198 saALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d-~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~ 262 (302)
T PF10186_consen 198 SAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID-FSP--------------SIDRPLPSLSYESGVDRQRFEYAVF 262 (302)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh-ccc--------------ccCCcchhhhccccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999 311 0123334444555778999999999
Q ss_pred HHHHHHHHHHHhcCCCCC--CccchHHHHHHHHHHccCC
Q 023729 237 LLNKDIEQLLNYIGVKSL--GPRHVLANLKELLRTIQSP 273 (278)
Q Consensus 237 LLnknI~qL~~~~Gl~~~--~~~~tL~NL~~Ll~~~~s~ 273 (278)
|||+||+|||++||+++. |+.++++||..++......
T Consensus 263 lLn~nI~~L~~~q~~~~~~l~~~~~l~nl~~~l~~l~~~ 301 (302)
T PF10186_consen 263 LLNKNIAQLCFSQGIDVPLLDPRDTLGNLLNLLWSLLQA 301 (302)
T ss_pred HHHHHHHHHHHHcCCCCCcCCchhhHHHHHHHHhhhccC
Confidence 999999999999999988 7889999999888876544
No 2
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=100.00 E-value=4.5e-35 Score=273.75 Aligned_cols=209 Identities=29% Similarity=0.516 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh-----chH-HHHHHHHHHHHHHHHHHHHHhhccccccCCCCccc
Q 023729 31 ERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-----YGH-LQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQ 104 (278)
Q Consensus 31 e~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~-----~~r-L~~l~~~l~~rr~~lv~el~~IypI~~~~~p~~~~ 104 (278)
-++..+++++......+...++.|++...+....+. ... .+-..+..+.|-.++..+....|+|++..+|....
T Consensus 120 ~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~~~~~~~~~irq~~~~~s~i 199 (377)
T KOG2896|consen 120 SNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLEQRIQDTFKIRQDGSPLSKI 199 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHhHHHhhhhhhhccCcchhee
Confidence 445555666666666666777777765555554332 111 22344567778889999999999999988654211
Q ss_pred ccccCCCCCCCCCCCCCCCCCCcceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 023729 105 ELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRL 184 (278)
Q Consensus 105 ~~~~~p~~~~~g~~~~~~~~~~~~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~LpYpi~~ 184 (278)
+|- .... ++..|||||++||+. .+|..+++ ..++|||||+||||++||.||.+||+|||.+
T Consensus 200 ----~~l--------~~~~-~~~v~tIrGl~lp~~-----~d~~~~s~-~~~aaALGylaHLv~~Is~~L~~pLRYPIl~ 260 (377)
T KOG2896|consen 200 ----LPL--------QFSY-CHLVFTIRGLKLPFI-----EDKQNKSE-QETAAALGYLAHLVSMISKYLEVPLRYPILL 260 (377)
T ss_pred ----ecC--------Cccc-chhhhhhhcccCCch-----hhhhccch-HHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 110 0011 367899999999984 33344555 5799999999999999999999999999999
Q ss_pred cCCcceeecCCCCCCCCCCccccccccCCCCCcccCcccCCCChhhHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHH
Q 023729 185 GGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKDIEQLLNYIGVKSLGPRHVLANLK 264 (278)
Q Consensus 185 ~gSrSyI~d~~~~~~~~~~~~~~~~~~~~~~~~~fPLf~~~~d~~~F~yav~LLnknI~qL~~~~Gl~~~~~~~tL~NL~ 264 (278)
.||+|+|.|+++...+ ..|+||||.++.++.+|+||+||||+||+|||+++|++++++++||+||.
T Consensus 261 ~~Sks~I~D~i~~~~~--------------ttr~fply~k~~~~e~f~~glylL~qNiaqlr~~~gl~t~~ld~tl~~L~ 326 (377)
T KOG2896|consen 261 AGSKSYIRDYIPDIET--------------TTREFPLYTKSQEIEQFEYGLYLLNQNIAQLRYDCGLPTPDLDQTLDNLD 326 (377)
T ss_pred ccccceecccCCcccc--------------ccccccCccccchHHHHHHHHHHHhccHHHHHHHcCCCCccHHHhhhhHH
Confidence 9999999999986543 26899999999999999999999999999999999999999999999999
Q ss_pred HHHHHccC
Q 023729 265 ELLRTIQS 272 (278)
Q Consensus 265 ~Ll~~~~s 272 (278)
+|+..+.-
T Consensus 327 d~~~~~~~ 334 (377)
T KOG2896|consen 327 DFIELLDD 334 (377)
T ss_pred HHHHHhhh
Confidence 99987653
No 3
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=99.39 E-value=2e-11 Score=111.49 Aligned_cols=88 Identities=25% Similarity=0.228 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccCCcceeecCCCCCCCCCCccccccccCCCCCcccCcccCCCChhhH
Q 023729 152 EVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRA 231 (278)
Q Consensus 152 ~~~~isaaLgyvahlv~lls~yL~v~LpYpi~~~gSrSyI~d~~~~~~~~~~~~~~~~~~~~~~~~~fPLf~~~~d~~~F 231 (278)
|+-.|.+||.|++|||++||+||+|+||..+.+ +|.+- +.-.+..|
T Consensus 185 ~ay~i~aAltyt~QLv~lLS~ilnvrlP~kl~~-------~dfC~---------------------------e~ltke~f 230 (359)
T KOG4398|consen 185 DAYPIFAALTYTLQLVHLLSVILNVRLPEKLSH-------HDFCI---------------------------ERLTKESF 230 (359)
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCchhhcc-------hhHHH---------------------------HHhhHHHH
Confidence 445799999999999999999999999999875 33321 11245799
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC--CccchHHHHHHHHHHccCC
Q 023729 232 AYAVFLLNKDIEQLLNYIGVKSL--GPRHVLANLKELLRTIQSP 273 (278)
Q Consensus 232 ~yav~LLnknI~qL~~~~Gl~~~--~~~~tL~NL~~Ll~~~~s~ 273 (278)
..+|.-||-||..||.+||+.-. -..|||.||-.|..+..++
T Consensus 231 ~R~~s~Ln~nIiYLc~~q~v~l~~L~~~htl~NLial~s~~~~d 274 (359)
T KOG4398|consen 231 NRDWSTLNDNIIYLCIFQGVSLTKLKYTHTLHNLIALASFVVND 274 (359)
T ss_pred HHHHHHHhhhHHHHHHHhccchhhccccchHHHHHHHhhhhHhh
Confidence 99999999999999999998765 4579999999998876553
No 4
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=99.04 E-value=1.6e-08 Score=95.46 Aligned_cols=99 Identities=24% Similarity=0.325 Sum_probs=66.8
Q ss_pred ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcccccCCcceeecCCCCCCCCCCccc
Q 023729 128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSS 206 (278)
Q Consensus 128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~Lp-Ypi~~~gSrSyI~d~~~~~~~~~~~~~ 206 (278)
.=||+|++|.-.+ +..-+-.+|+||+|++|.|+..||..+++.+. |.++|.||.|+|.+....
T Consensus 150 fGTINGlRLGrl~-------~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~--------- 213 (314)
T PF04111_consen 150 FGTINGLRLGRLP-------NVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD--------- 213 (314)
T ss_dssp EEEETTEEE--BT-------TB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred eeeECCeeeccCC-------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence 4589999997643 11223457999999999999999999999964 999999999999987531
Q ss_pred cccccCCCCCcccCcccCCC-------ChhhHHHHHHHHHHHHHHHHHhc
Q 023729 207 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKDIEQLLNYI 249 (278)
Q Consensus 207 ~~~~~~~~~~~~fPLf~~~~-------d~~~F~yav~LLnknI~qL~~~~ 249 (278)
.....||||..+. ...+|..|+.-+-.-+.|++...
T Consensus 214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~ 256 (314)
T PF04111_consen 214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV 256 (314)
T ss_dssp --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 0246899998864 23499999998888888887544
No 5
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.14 E-value=0.00011 Score=71.36 Aligned_cols=98 Identities=26% Similarity=0.293 Sum_probs=73.5
Q ss_pred ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCCC-CcccccCCcceeecCCCCCCCCCCccc
Q 023729 128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSS 206 (278)
Q Consensus 128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~Lp-Ypi~~~gSrSyI~d~~~~~~~~~~~~~ 206 (278)
.=||.|++|.-.+.. .-+-+.|+||+|=++-++..++.=+|+.+- |.++++||.|||.-...
T Consensus 283 fgtIN~FRLG~lp~~-------pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~---------- 345 (447)
T KOG2751|consen 283 FGTINNFRLGRLPSV-------PVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMV---------- 345 (447)
T ss_pred ccccccceeccccCC-------CcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhcc----------
Confidence 346888888665311 113357999999999999999999999775 99999999999996642
Q ss_pred cccccCCCCCcccCcccCCCCh----hhHHHHHHHHHHHHHHHHHhc
Q 023729 207 NIALSTNTKPAEFPLFLEGQDA----TRAAYAVFLLNKDIEQLLNYI 249 (278)
Q Consensus 207 ~~~~~~~~~~~~fPLf~~~~d~----~~F~yav~LLnknI~qL~~~~ 249 (278)
..|+++|||..++-+ ++|+.|+-.-=--+.|+...+
T Consensus 346 -------~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~ 385 (447)
T KOG2751|consen 346 -------NLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADEL 385 (447)
T ss_pred -------CCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHH
Confidence 247899999987633 588888776666666665443
No 6
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.33 E-value=2.2 Score=42.18 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQ 81 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr 81 (278)
++.+++-...+.+...+..+|.++|++.+.++..-...|.+...++...+.+|.+.+ .+|..++.+-+.+|
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~---------~~l~~l~~q~r~qr 114 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN---------ARLNALEVQEREQR 114 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH---------HHHHHHHHHHHHHH
Confidence 455666666777777777777777777777777766666666666666666666543 33445555668999
Q ss_pred HHHHHHHHhhccccccC
Q 023729 82 QFMISQVSFLYPVKILV 98 (278)
Q Consensus 82 ~~lv~el~~IypI~~~~ 98 (278)
.+|-.+|+.+|--..++
T Consensus 115 ~~La~~L~A~~r~g~~p 131 (420)
T COG4942 115 RRLAEQLAALQRSGRNP 131 (420)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 99999999999876544
No 7
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.82 E-value=3.4 Score=37.66 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ 55 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~ 55 (278)
..+.+...+++.+++.++..++++..+++.+...+..++..+..+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444433333333
No 8
>PRK11637 AmiB activator; Provisional
Probab=91.74 E-value=3.8 Score=40.16 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023729 38 RSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPV 94 (278)
Q Consensus 38 ~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~IypI 94 (278)
..+......+...+.++.+.+..+..- ...+..++..+...+..+-..+..+|--
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l--~~eI~~~q~~l~~~~~~l~~rlra~Y~~ 136 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDEL--NASIAKLEQQQAAQERLLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444444444555444444432 2457788888888998898889988863
No 9
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.42 E-value=12 Score=33.50 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ 55 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~ 55 (278)
|.|+.+-+..+.++..+...+.++.+.+..+++.+.......-+.|.....+|+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~ 145 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLK 145 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666555555555555555555555444433333444444443
No 10
>PRK11637 AmiB activator; Provisional
Probab=82.22 E-value=25 Score=34.48 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 023729 77 LRMRQQFMISQ 87 (278)
Q Consensus 77 l~~rr~~lv~e 87 (278)
+...+..++.+
T Consensus 164 i~~~d~~~l~~ 174 (428)
T PRK11637 164 LNQARQETIAE 174 (428)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 11
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=82.18 E-value=36 Score=30.29 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHhHHH-HHHHhhhhh--hchHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTA-LSVARKRLQE-SNRLLAGEK--GYGHLQKLQKML 77 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~-l~~a~~~l~e-~~~~L~~e~--~~~rL~~l~~~l 77 (278)
..-+++|+.++..-...+++++++.++.+++-..++......... ++.|+...+. ....+...+ ....+...+.++
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999988888887777666444433322 2233333222 111111111 123455666777
Q ss_pred HHHHHHHHHHHHh
Q 023729 78 RMRQQFMISQVSF 90 (278)
Q Consensus 78 ~~rr~~lv~el~~ 90 (278)
...|.....+|..
T Consensus 159 ~~ek~~A~~el~~ 171 (204)
T PRK09174 159 AAIKAKAMADVGS 171 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666553
No 12
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.50 E-value=27 Score=37.68 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH-HHhhhhhhchHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEK---EDAKNQEERLSMEVRSLLVAGTALSVARKRLQESN-RLLAGEKGYGHLQK 72 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~---~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~-~~L~~e~~~~rL~~ 72 (278)
|++++..+.++.++.++..... ++.....|+|+.+-..+...+..++.|+..++|+. ..+..++.+..++.
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klke 431 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKE 431 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556666666666665544433 44444447788888888888888888887777755 55666655655553
No 13
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.35 E-value=49 Score=29.46 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh--chHHHHHHHHHHHHH
Q 023729 8 RRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG--YGHLQKLQKMLRMRQ 81 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~--~~rL~~l~~~l~~rr 81 (278)
++.+++-=+..++++..+-+++=++|++...........+...+...++.-..|+.++. ...|..++++++.-+
T Consensus 106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455544433333334444444455544455666554 333556666655443
No 14
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.14 E-value=51 Score=29.53 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 8 RRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
.+.|+.++..+.+.++++....+.+..++...+...-.+....-.+|++.++.|..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777776666666666655555544443434344445554444443
No 15
>PRK09039 hypothetical protein; Validated
Probab=77.72 E-value=52 Score=31.61 Aligned_cols=43 Identities=21% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhh
Q 023729 22 EKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGE 64 (278)
Q Consensus 22 l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e 64 (278)
...+|...+.||.+-+..+.....+|.++..+..+.+..++.-
T Consensus 135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444555555555555555544443
No 16
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.56 E-value=57 Score=33.15 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=4.6
Q ss_pred eEEeceecCC
Q 023729 129 LTILGLHLTI 138 (278)
Q Consensus 129 ~tI~Gl~Lp~ 138 (278)
.|+.-++||+
T Consensus 203 ~~~~~v~lp~ 212 (514)
T TIGR03319 203 TTVSVVNLPN 212 (514)
T ss_pred heeeeEEcCC
Confidence 4444444444
No 17
>PRK12704 phosphodiesterase; Provisional
Probab=77.07 E-value=60 Score=33.04 Aligned_cols=10 Identities=10% Similarity=0.012 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 023729 230 RAAYAVFLLN 239 (278)
Q Consensus 230 ~F~yav~LLn 239 (278)
....|..+|.
T Consensus 382 H~~iGa~il~ 391 (520)
T PRK12704 382 HVEIGAELAK 391 (520)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 18
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=73.61 E-value=56 Score=34.90 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCC
Q 023729 229 TRAAYAVFLLNKDIEQLLNYIGVKS 253 (278)
Q Consensus 229 ~~F~yav~LLnknI~qL~~~~Gl~~ 253 (278)
.+++.|+..|.+=|.+... -|+..
T Consensus 701 ~~~~eA~~~l~~~ld~a~~-~g~~~ 724 (771)
T TIGR01069 701 QRSEEALDRLEKFLNDALL-AGYEV 724 (771)
T ss_pred CCHHHHHHHHHHHHHHHHH-CCCCE
Confidence 4788899888887776543 34443
No 19
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.20 E-value=71 Score=32.50 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 023729 24 EDAKNQEERLSMEVRSLLVAGTAL 47 (278)
Q Consensus 24 ~~i~~~re~l~~~~~~l~~~~~~l 47 (278)
+++++++++|..+...|..+...+
T Consensus 97 e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 97 ESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444344333333
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=72.70 E-value=70 Score=30.32 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=7.6
Q ss_pred HHHHHhhccccccC
Q 023729 85 ISQVSFLYPVKILV 98 (278)
Q Consensus 85 v~el~~IypI~~~~ 98 (278)
+..|-.+.+++...
T Consensus 285 ~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 285 VDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHCcEEEE
Confidence 44455666666543
No 21
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=71.11 E-value=87 Score=30.62 Aligned_cols=63 Identities=35% Similarity=0.388 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHH----------------HHHHHhhhhhhchHHHHHHHHHH-HHHHHHHHHHHhhcc
Q 023729 31 ERLSMEVRSLLVAGTALSVARKRLQ----------------ESNRLLAGEKGYGHLQKLQKMLR-MRQQFMISQVSFLYP 93 (278)
Q Consensus 31 e~l~~~~~~l~~~~~~l~~a~~~l~----------------e~~~~L~~e~~~~rL~~l~~~l~-~rr~~lv~el~~Iyp 93 (278)
+.+.++.+++.+....+..++.+++ +..+.|+.. ..+++.++..|. ++.++..+++...++
T Consensus 83 q~~~~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk~--~~~~~k~~~kL~~kr~q~~~~q~~l~k~ 160 (377)
T KOG2896|consen 83 QCLSAQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSKK--RAHLEKTKQKLEDKRQQFNASQVKLQKQ 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555444444444443 344444432 466778888888 888889999998888
Q ss_pred cc
Q 023729 94 VK 95 (278)
Q Consensus 94 I~ 95 (278)
++
T Consensus 161 ~k 162 (377)
T KOG2896|consen 161 LK 162 (377)
T ss_pred HH
Confidence 88
No 22
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.96 E-value=40 Score=32.18 Aligned_cols=84 Identities=10% Similarity=0.139 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh-chHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-YGHLQKLQKMLRMRQQ 82 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~-~~rL~~l~~~l~~rr~ 82 (278)
.++..+..+++.......+.+.+...+.+..............+...+.+|..++.++++-.+ ..|-...-..+.....
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLK 308 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhc
Confidence 445555566666666666666666655555554444444445556777788888877665543 3333333345566666
Q ss_pred HHHHH
Q 023729 83 FMISQ 87 (278)
Q Consensus 83 ~lv~e 87 (278)
.++++
T Consensus 309 ~l~GD 313 (344)
T PF12777_consen 309 NLVGD 313 (344)
T ss_dssp HHHHH
T ss_pred ccHHH
Confidence 66665
No 23
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.96 E-value=25 Score=33.93 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 11 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 11 ~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
|..-+.+-.++++...+++=|++.+...+|.++...|..-+++|.+.++.|+.
T Consensus 208 rasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEq 260 (365)
T KOG2391|consen 208 RASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQ 260 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 33445555666666666666777777777777777777777777776666665
No 24
>PRK00106 hypothetical protein; Provisional
Probab=69.22 E-value=99 Score=31.74 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023729 72 KLQKMLRMR 80 (278)
Q Consensus 72 ~l~~~l~~r 80 (278)
.+..++...
T Consensus 177 ~~~~~~~~~ 185 (535)
T PRK00106 177 ETENKLTHE 185 (535)
T ss_pred HHHHHHHHH
Confidence 333333333
No 25
>PRK00106 hypothetical protein; Provisional
Probab=68.97 E-value=1.3e+02 Score=31.02 Aligned_cols=12 Identities=33% Similarity=0.191 Sum_probs=6.0
Q ss_pred ceEEeceecCCC
Q 023729 128 SLTILGLHLTIL 139 (278)
Q Consensus 128 ~~tI~Gl~Lp~~ 139 (278)
..|+.-++||+.
T Consensus 223 e~tvs~v~lp~d 234 (535)
T PRK00106 223 EQTITTVHLPDD 234 (535)
T ss_pred hheeeeEEcCCh
Confidence 344555555553
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.70 E-value=68 Score=33.26 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 023729 72 KLQKMLRMRQQFMISQVSFLYPV 94 (278)
Q Consensus 72 ~l~~~l~~rr~~lv~el~~IypI 94 (278)
.+..++..++..+....+..+|+
T Consensus 273 ~le~e~~e~~~~l~~l~~~~~p~ 295 (650)
T TIGR03185 273 EIEAARKANRAQLRELAADPLPL 295 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccCCH
Confidence 34444444444444444444444
No 27
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.57 E-value=86 Score=33.58 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023729 230 RAAYAVFLLNKDIEQLL 246 (278)
Q Consensus 230 ~F~yav~LLnknI~qL~ 246 (278)
+.+.|+..|.+=|....
T Consensus 713 ~~eeA~~~l~~fl~~a~ 729 (782)
T PRK00409 713 RYEEALERLDKYLDDAL 729 (782)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67788877777666544
No 28
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=67.13 E-value=91 Score=27.60 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHH
Q 023729 38 RSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFM 84 (278)
Q Consensus 38 ~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~l 84 (278)
..+.........++..|.|..++|..-+ .|+..|.++|..-|..+
T Consensus 123 ~nl~~a~~~a~~AQ~el~eK~qLLeaAk--~Rve~L~~QL~~Ar~D~ 167 (188)
T PF05335_consen 123 ANLANAEQVAEGAQQELAEKTQLLEAAK--RRVEELQRQLQAARADY 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666666644 66777777777766554
No 29
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.93 E-value=1.1e+02 Score=32.68 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
+++....++++++++++.++++..+.
T Consensus 527 ~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 527 LEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 30
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=65.07 E-value=83 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
.-+++|+.++..-...+++.+++.++.+++...+......
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888888777777644443
No 31
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=64.63 E-value=95 Score=26.91 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 43 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~ 43 (278)
+.-++.|+..+..-...++..++++++.+++...++......
T Consensus 57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~E 98 (181)
T PRK13454 57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAE 98 (181)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788999998888888888888888887777776444433
No 32
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.62 E-value=58 Score=32.87 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=9.8
Q ss_pred hHHHHHHHhHHHHHHHhhhh
Q 023729 45 TALSVARKRLQESNRLLAGE 64 (278)
Q Consensus 45 ~~l~~a~~~l~e~~~~L~~e 64 (278)
.++++++.++++..++|..+
T Consensus 105 ~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 105 QAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34445555555544555443
No 33
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=63.85 E-value=1.6e+02 Score=29.17 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Q 023729 155 RSATALGYIAHVVSLIASYLEVPLR 179 (278)
Q Consensus 155 ~isaaLgyvahlv~lls~yL~v~Lp 179 (278)
-|+..|..++=++.++|..+++++|
T Consensus 343 ~inllL~l~~vlLv~vSt~~~~~~P 367 (395)
T PF10267_consen 343 LINLLLTLLTVLLVFVSTVANCPLP 367 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 4788899999999999999999876
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.70 E-value=1.2e+02 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM 35 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~ 35 (278)
.++++..-.++++..+...+..+|.+.|+++..
T Consensus 45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~ 77 (239)
T COG1579 45 KALEALEIELEDLENQVSQLESEIQEIRERIKR 77 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666555555554443
No 35
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.79 E-value=89 Score=25.95 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK 65 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~ 65 (278)
+..+....+.+...+++.++++....+.+.........+..++......+..++
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555555555555555555544
No 36
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=62.60 E-value=1.7e+02 Score=29.15 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
.-+++|+..+.+-...+++.+++.++.+++...++
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L 62 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAV 62 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777666544444
No 37
>PRK12705 hypothetical protein; Provisional
Probab=62.07 E-value=1.2e+02 Score=31.08 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=6.1
Q ss_pred HHHHcCCCCCCc
Q 023729 170 IASYLEVPLRYP 181 (278)
Q Consensus 170 ls~yL~v~LpYp 181 (278)
++..||+.-.+|
T Consensus 294 a~~~lgi~~~~~ 305 (508)
T PRK12705 294 VLEELGIFDLKP 305 (508)
T ss_pred HHHHhccccccH
Confidence 444556555444
No 38
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=61.79 E-value=1.3e+02 Score=27.67 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQ 81 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr 81 (278)
|+.|+.-..-..++..+.+.+..++++-|.++.............+...+..+.++....... -.++..++..+...+
T Consensus 60 r~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~l--e~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 60 RRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDL--ENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHH--HHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555554444444444444444444332221111 123445666666666
Q ss_pred HHHHHHHHhhc
Q 023729 82 QFMISQVSFLY 92 (278)
Q Consensus 82 ~~lv~el~~Iy 92 (278)
...-.++..+-
T Consensus 138 ~~heeEi~~L~ 148 (312)
T PF00038_consen 138 QNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHTTS
T ss_pred hhhhhhhhhhh
Confidence 55555565554
No 39
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=61.35 E-value=98 Score=25.97 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 1 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
||-..+...+|.+.+..+++.+.++.....++|..--.........+..+..+|.+++..+..
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777888888888888887777777666666655555666666777777766655544
No 40
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=61.33 E-value=1.3e+02 Score=27.48 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-+++|+..+..-...++..+++.++.+++-..+...+.
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~ 70 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLE 70 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888777777777777777666666555554433
No 41
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.23 E-value=64 Score=23.78 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHhHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEERLSME---VRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~---~~~l~~~~~~l~~a~~~l~e 56 (278)
++.-..+++++...+.+|+++....|+++.+- ++.|. ...+.|+.+++.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~---ekne~Ar~rvEa 53 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLL---EKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45667889999999999998877777554443 33333 223455555543
No 42
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.15 E-value=1.3e+02 Score=32.16 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 39 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~ 39 (278)
+.+++.+..+++.....++++++++++++++..+++.
T Consensus 530 ~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555433
No 43
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.14 E-value=62 Score=36.18 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh
Q 023729 31 ERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK 65 (278)
Q Consensus 31 e~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~ 65 (278)
.++...+.+.....+.+.+..+++.|++..++..+
T Consensus 563 k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~ 597 (1293)
T KOG0996|consen 563 KELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSR 597 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333444455555555555554443
No 44
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=59.94 E-value=1.9e+02 Score=28.85 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=6.7
Q ss_pred CCcccCcccCC
Q 023729 215 KPAEFPLFLEG 225 (278)
Q Consensus 215 ~~~~fPLf~~~ 225 (278)
+.+.-|-|+|.
T Consensus 380 ger~i~~f~d~ 390 (499)
T COG4372 380 GERLIPRFCDR 390 (499)
T ss_pred cchhhHHHHhh
Confidence 45566777664
No 45
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=59.65 E-value=1.3e+02 Score=31.32 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc
Q 023729 68 GHLQKLQKMLRMRQQFMISQVSFLY 92 (278)
Q Consensus 68 ~rL~~l~~~l~~rr~~lv~el~~Iy 92 (278)
.++..|+.+-...|.-|+.++..+=
T Consensus 408 ~rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 408 QRLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455666777777777776665543
No 46
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=59.05 E-value=1.5e+02 Score=27.94 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhccccccC
Q 023729 75 KMLRMRQQFMISQVSFLYPVKILV 98 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~~~ 98 (278)
..|.-+|-.++.||+.+-+|+...
T Consensus 194 n~L~DqRD~ll~~LS~~v~i~v~~ 217 (322)
T TIGR02492 194 NDLLDQRDLLLKELSQLIGISVSE 217 (322)
T ss_pred hHhHHHHHHHHHHHHhHcCeEEEE
Confidence 468889999999999999999765
No 47
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.26 E-value=1.2e+02 Score=31.47 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccccC
Q 023729 74 QKMLRMRQQFMISQVSFLYPVKILV 98 (278)
Q Consensus 74 ~~~l~~rr~~lv~el~~IypI~~~~ 98 (278)
...|.-+|-.|+.||+.+-+|+...
T Consensus 204 ~ndLlDqRD~ll~eLS~~v~i~v~~ 228 (627)
T PRK06665 204 PNDLLDRRDLLVDKLSSLIDVSIER 228 (627)
T ss_pred chhhHHHHHHHHHHHHhhcCeEEEE
Confidence 3568899999999999999998764
No 48
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.76 E-value=47 Score=31.01 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 48 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~ 48 (278)
.++.-+.+++++...++++..+|+..+++|..+...|..|-++++
T Consensus 67 k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 67 KIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777888888888888888887777777765554
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.48 E-value=1.6e+02 Score=27.03 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=3.1
Q ss_pred EeceecC
Q 023729 131 ILGLHLT 137 (278)
Q Consensus 131 I~Gl~Lp 137 (278)
=|++.||
T Consensus 202 GC~m~l~ 208 (239)
T COG1579 202 GCHMKLP 208 (239)
T ss_pred CCeeeec
Confidence 3444444
No 50
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=56.35 E-value=1.8e+02 Score=30.92 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 023729 31 ERLSMEVRSLLVA 43 (278)
Q Consensus 31 e~l~~~~~~l~~~ 43 (278)
|+|+.++..|..+
T Consensus 470 e~Lq~Kl~~L~~a 482 (697)
T PF09726_consen 470 EQLQNKLQNLVQA 482 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444443
No 51
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.19 E-value=1.2e+02 Score=27.85 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 31 ERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 31 e~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
+++.++...+..+-..+..-.++|.|....|.+
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 333344444444444444444445544444443
No 52
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=56.15 E-value=1.7e+02 Score=28.44 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 1 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
+++|+.+-+.-..++..+..+..++|.+....+..-..++......+..|+.+|..
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 47788888888888888888888888887777777777777766677777776654
No 53
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=55.96 E-value=82 Score=23.96 Aligned_cols=39 Identities=3% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
++.+-..-+.+|.++.+.|..+++..|++.++-+....+
T Consensus 26 K~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaar 64 (78)
T COG4238 26 KIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 444445556666777777777777777766666544433
No 54
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.21 E-value=1.4e+02 Score=25.73 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHh-----------HHHHHHHhhhhhhchHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA-GTALSVARKR-----------LQESNRLLAGEKGYGHLQKLQKM 76 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~-~~~l~~a~~~-----------l~e~~~~L~~e~~~~rL~~l~~~ 76 (278)
+.....++...++|+.++++-+.+|...+..+..- +-++..-+.+ +++.+..+. ..+..+..+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~-----~ei~~lr~~ 146 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKID-----TEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 44556677888888888888888888887555431 1122222222 222222222 224467777
Q ss_pred HHHHHHHHHHHH
Q 023729 77 LRMRQQFMISQV 88 (278)
Q Consensus 77 l~~rr~~lv~el 88 (278)
+...++.+++-+
T Consensus 147 iE~~K~~~lr~~ 158 (177)
T PF07798_consen 147 IESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHH
Confidence 777777777643
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.15 E-value=1.8e+02 Score=32.59 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 023729 155 RSATALGYIAHVVSLIASYLE 175 (278)
Q Consensus 155 ~isaaLgyvahlv~lls~yL~ 175 (278)
.+...+..+...+.-+..++.
T Consensus 852 ~le~~~~~~~~~~~~~~~~l~ 872 (1201)
T PF12128_consen 852 ELEEELKALEEQLEQLEEQLR 872 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544
No 56
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=54.79 E-value=75 Score=26.64 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNR 59 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~ 59 (278)
|..+.-.+..+.+++..-++|-...+++..-+.++..++++|..|...+.|++-
T Consensus 4 e~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~ 57 (136)
T PF11570_consen 4 EVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEI 57 (136)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 444445566778888888999999999999999999999999999999998663
No 57
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=54.25 E-value=1.4e+02 Score=31.68 Aligned_cols=8 Identities=13% Similarity=-0.085 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 023729 155 RSATALGY 162 (278)
Q Consensus 155 ~isaaLgy 162 (278)
.|-.+|.-
T Consensus 689 ~I~~iL~~ 696 (717)
T PF10168_consen 689 TIKEILKQ 696 (717)
T ss_pred HHHHHHHH
Confidence 45555543
No 58
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=54.18 E-value=2e+02 Score=27.99 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 023729 70 LQKLQKMLRMRQQFM 84 (278)
Q Consensus 70 L~~l~~~l~~rr~~l 84 (278)
|..+..+|...++.|
T Consensus 303 L~~IseeLe~vK~em 317 (359)
T PF10498_consen 303 LAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 59
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.07 E-value=2.1e+02 Score=32.65 Aligned_cols=20 Identities=5% Similarity=-0.066 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEK 23 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~ 23 (278)
|+.+-..++.++..+++.+.
T Consensus 743 ri~el~~~IaeL~~~i~~l~ 762 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELA 762 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 60
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.60 E-value=1.7e+02 Score=25.97 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 40 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l 40 (278)
.-+++|+..+.+-...+++.++++++..++...+....
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A 112 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENA 112 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888777776666665333
No 61
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=51.97 E-value=1.5e+02 Score=25.31 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 43 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~ 43 (278)
..-++.|+..+.+-...++..+++.+..+++-..+.......
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~e 85 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEE 85 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888877777776666444433
No 62
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=51.51 E-value=2.3e+02 Score=27.99 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMS 16 (278)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (278)
++++..+.+++.+.
T Consensus 277 ~~L~~~r~rL~~L~ 290 (432)
T TIGR00237 277 TLLHQKKARLEQLV 290 (432)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 63
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.45 E-value=1.5e+02 Score=25.19 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
..-++.|+.++..-...++..++++++..++...++.....
T Consensus 45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ 85 (174)
T PRK07352 45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQ 85 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888887777766644443
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=50.89 E-value=3.1e+02 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 8 RRLLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
.+.|..++-..+++|+.|++.+.|++..-.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e 572 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELE 572 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666555554433
No 65
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=50.28 E-value=1.6e+02 Score=25.10 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-+++|+..+..-...++..+++.+..+++...++....
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar 87 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAK 87 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888777777777777777777776666664433
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.61 E-value=2.7e+02 Score=30.22 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 023729 160 LGYIAHVVSLIA 171 (278)
Q Consensus 160 Lgyvahlv~lls 171 (278)
.+-+.|+..-|-
T Consensus 485 isei~qlqarik 496 (1118)
T KOG1029|consen 485 ISEIDQLQARIK 496 (1118)
T ss_pred HHHHHHHHHHHH
Confidence 344445544443
No 67
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=49.49 E-value=1.9e+02 Score=28.81 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhccccccC
Q 023729 75 KMLRMRQQFMISQVSFLYPVKILV 98 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~~~ 98 (278)
..|.-+|-.++.||+.+-+|+...
T Consensus 193 ndL~DqRD~ll~eLS~~v~i~v~~ 216 (456)
T PRK07191 193 SDLLDQRDLQIKKLSGLIEVRVVQ 216 (456)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEE
Confidence 468889999999999999999765
No 68
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=49.21 E-value=1.6e+02 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
..-++.|+..+..-...+++++++.+..+++-..+......
T Consensus 36 ~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ 76 (167)
T PRK14475 36 AGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAER 76 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888888777777644433
No 69
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=48.84 E-value=1.6e+02 Score=24.71 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-+++|+..+..-...++..+++.+..+++...+.....
T Consensus 35 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~ 73 (164)
T PRK14473 35 NLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKAR 73 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888887777776664443
No 70
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.56 E-value=2e+02 Score=31.72 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
|+.|.+.+.+-....+-|.-.++++..++..-+.++.-+..+++.++-++.-++..|+.
T Consensus 936 l~~RA~~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss 994 (1243)
T KOG0971|consen 936 LELRAAALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSS 994 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666677777777777777777777777778888887777776666663
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.55 E-value=1.3e+02 Score=34.06 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
+|.+.|...++++++..++.+.+...-+++|..+-.+...|+.-|+.
T Consensus 1542 ~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1542 ARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444445555555544444444444
No 72
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=48.48 E-value=2.2e+02 Score=28.57 Aligned_cols=77 Identities=9% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 023729 16 SMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVK 95 (278)
Q Consensus 16 ~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~IypI~ 95 (278)
-.+...+..+++..|+++..++...... +...-.+|.+.+..+......+ .-...|.-.|-.++.||+.+-+|+
T Consensus 135 ~~~~n~~~~~L~~~~~~~~~~i~~~V~~---iN~l~~~Ia~LN~~I~~~~~~g---~~~ndL~DqRD~ll~~LS~~v~i~ 208 (483)
T PRK07521 135 ANSLNDASDAVQSARADADAEIADSVDT---LNDLLAQFEDANNAVVSGTATG---RDASDALDQRDKLLKQISQIVGVT 208 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCC---CCchhhHHHHHHHHHHHHhhcCeE
Confidence 3344444455555555555555333322 2222234444443332211111 123468889999999999999999
Q ss_pred ccC
Q 023729 96 ILV 98 (278)
Q Consensus 96 ~~~ 98 (278)
...
T Consensus 209 v~~ 211 (483)
T PRK07521 209 TVT 211 (483)
T ss_pred EEE
Confidence 764
No 73
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=48.33 E-value=1.7e+02 Score=24.77 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l 33 (278)
+.++..++..++.+++..+.+|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 74
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.21 E-value=1e+02 Score=22.13 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
.-+.+|..+.+.|..+|...|-++
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 75
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.18 E-value=2.2e+02 Score=26.16 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023729 70 LQKLQKMLRMRQQFMISQV 88 (278)
Q Consensus 70 L~~l~~~l~~rr~~lv~el 88 (278)
+..+...+...|..|-.++
T Consensus 264 i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 264 IAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHH
Confidence 4455555666555554433
No 76
>PRK11281 hypothetical protein; Provisional
Probab=48.16 E-value=1.7e+02 Score=32.77 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEERLS 34 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re~l~ 34 (278)
.++.+.+.+++..+.+.+.+++++.+.+|.
T Consensus 75 i~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le 104 (1113)
T PRK11281 75 IDRQKEETEQLKQQLAQAPAKLRQAQAELE 104 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444444455554444444444444444
No 77
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=47.90 E-value=2e+02 Score=25.47 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 1 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
||.+-+..+..+.++...-++|.+-+++.+++.
T Consensus 39 mkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~ 71 (201)
T PF13851_consen 39 MKKKEERNEKLMAEISQENKRLSEPLKKAEEEV 71 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455555555566666666666665555555333
No 78
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=47.80 E-value=2.3e+02 Score=26.24 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKED----AKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKML 77 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~----i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l 77 (278)
++.++.+-.+++.+.++.+++.+. |...=|+|+-+++.+--.+.-=++++.++...+.-| -.|++.++.+|
T Consensus 163 ~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seL-----q~r~~~l~~~L 237 (289)
T COG4985 163 ERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSEL-----QKRLAQLQTEL 237 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 577888888999999999888753 222224444444443333311112222222211112 24566666677
Q ss_pred HHHHHHHH
Q 023729 78 RMRQQFMI 85 (278)
Q Consensus 78 ~~rr~~lv 85 (278)
..-|+.+-
T Consensus 238 ~~L~~e~~ 245 (289)
T COG4985 238 DALRAELE 245 (289)
T ss_pred HHHhhhhh
Confidence 66665443
No 79
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=46.99 E-value=1.8e+02 Score=24.75 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 40 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l 40 (278)
.-++.|+.++..-...++..+++.+...++-..+....
T Consensus 43 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a 80 (173)
T PRK13460 43 KALDERASGVQNDINKASELRLEAEALLKDYEARLNSA 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888877777776666665433
No 80
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=46.79 E-value=2.6e+02 Score=27.35 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.2
Q ss_pred HHhhcccc
Q 023729 88 VSFLYPVK 95 (278)
Q Consensus 88 l~~IypI~ 95 (278)
|..+-|..
T Consensus 388 L~~lsP~~ 395 (438)
T PRK00286 388 LEALSPLA 395 (438)
T ss_pred HHhCCChh
Confidence 33443443
No 81
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=46.77 E-value=70 Score=23.10 Aligned_cols=27 Identities=11% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 11 LMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 11 ~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
=+++|..++..|+.||.+.+.++..+.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888888888888887777766
No 82
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=46.62 E-value=2.2e+02 Score=28.94 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhhccccccC
Q 023729 75 KMLRMRQQFMISQVSFLYPVKILV 98 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~~~ 98 (278)
..|.-+|-.++.||+.+-+|+...
T Consensus 196 ndL~DqRD~ll~eLS~~v~i~v~~ 219 (547)
T PRK08147 196 NDLLDQRDQLVSELNQIVGVEVSV 219 (547)
T ss_pred chhHHHHHHHHHHHHhhcCeEEEE
Confidence 468889999999999999999764
No 83
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.49 E-value=2.6e+02 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023729 26 AKNQEERLSMEVRSLLVAGTALSVARK 52 (278)
Q Consensus 26 i~~~re~l~~~~~~l~~~~~~l~~a~~ 52 (278)
..+.+|+++..|+.|-.+..+|+.|++
T Consensus 103 t~aikeql~kyiReLEQaNDdLErakR 129 (333)
T KOG1853|consen 103 THAIKEQLRKYIRELEQANDDLERAKR 129 (333)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHhhh
Confidence 445668888899999999988887775
No 84
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.48 E-value=2.5e+02 Score=28.50 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=7.8
Q ss_pred HHHHHHHHhcCCCC
Q 023729 240 KDIEQLLNYIGVKS 253 (278)
Q Consensus 240 knI~qL~~~~Gl~~ 253 (278)
..|-||-..+|+|.
T Consensus 344 ~~LGWiSD~~GiPC 357 (472)
T TIGR03752 344 GGLGWISDPYGIPC 357 (472)
T ss_pred CCceeecCCCCCCC
Confidence 35555555566553
No 85
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.42 E-value=2.2e+02 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023729 20 KVEKEDAKNQEERLSMEVRSLLVAGTALS 48 (278)
Q Consensus 20 ~~l~~~i~~~re~l~~~~~~l~~~~~~l~ 48 (278)
.+..++..+.+++|..+++.+...-..|.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443333333
No 86
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=46.17 E-value=1.9e+02 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-++.|+..+..-...+++.+++.++..++-..+.....
T Consensus 54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~ 92 (184)
T PRK13455 54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQ 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888887777766666654433
No 87
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=45.61 E-value=2.3e+02 Score=25.59 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 39 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~ 39 (278)
.-+++|+..+..-...+++.+++.++.+++-..+...
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~ 68 (246)
T TIGR03321 32 DAMDAREKKIAGELADADTKKREAEQERREYEEKNEE 68 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777766666655555433
No 88
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=45.59 E-value=2e+02 Score=24.78 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-++.|+..+..-...+++.++++++...+...+.....
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~ 89 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777777766666554333
No 89
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=45.56 E-value=1.7e+02 Score=23.94 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHH
Q 023729 24 EDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60 (278)
Q Consensus 24 ~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~ 60 (278)
+.+...|+++..-...+......+.+|+..|...+..
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444443333
No 90
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.35 E-value=77 Score=29.19 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHh
Q 023729 76 MLRMRQQFMISQVSF 90 (278)
Q Consensus 76 ~l~~rr~~lv~el~~ 90 (278)
++..|++.+-.+|-.
T Consensus 86 ~~~~rq~~~y~dld~ 100 (263)
T PRK10803 86 QVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 91
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=45.20 E-value=1.8e+02 Score=24.26 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
..-+++|+..+..-...++..+++..+.+++...+.....
T Consensus 31 ~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~ 70 (159)
T PRK13461 31 KAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAK 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888888888888777776664443
No 92
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=44.88 E-value=1.8e+02 Score=24.09 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 40 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l 40 (278)
+.-+++|+.++.+-...+++++++++..+++-...+...
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A 71 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNA 71 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999999888888887766665433
No 93
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=44.71 E-value=3.3e+02 Score=30.66 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVAR 51 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~ 51 (278)
+++++.-...+.....+.+.+.+.+++...++...++.+..+...+..+.
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAE 655 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44555555555555555555555555545445444444444444444333
No 94
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=44.56 E-value=1.4e+02 Score=28.31 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR 38 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~ 38 (278)
.||++|..-+++|+.|.-++++| +=|+=|.+++
T Consensus 82 ~~l~dRetEI~eLksQL~RMrED---WIEEECHRVE 114 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMRED---WIEEECHRVE 114 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45666666666666666666653 4466677763
No 95
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=44.05 E-value=2.6e+02 Score=25.75 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVE 22 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l 22 (278)
+..++.+..+..+.+.+
T Consensus 83 ~~a~a~l~~~~~~~~~~ 99 (334)
T TIGR00998 83 AKAEANLAALVRQTKQL 99 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 96
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=43.92 E-value=3.8e+02 Score=29.10 Aligned_cols=8 Identities=25% Similarity=0.169 Sum_probs=4.9
Q ss_pred HHHHHHHH
Q 023729 155 RSATALGY 162 (278)
Q Consensus 155 ~isaaLgy 162 (278)
.|.+|||.
T Consensus 540 Aie~~lg~ 547 (1164)
T TIGR02169 540 AIEVAAGN 547 (1164)
T ss_pred HHHHHhhh
Confidence 56666664
No 97
>PLN03086 PRLI-interacting factor K; Provisional
Probab=43.90 E-value=1.7e+02 Score=30.30 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=8.0
Q ss_pred ceEEeceecCCCcc
Q 023729 128 SLTILGLHLTILPF 141 (278)
Q Consensus 128 ~~tI~Gl~Lp~~~~ 141 (278)
..+|.-..||.-.+
T Consensus 173 ~v~v~~~~Lpkgt~ 186 (567)
T PLN03086 173 LVEVRYIWLPKGTY 186 (567)
T ss_pred eEEEEEeecCCCCE
Confidence 45566666766433
No 98
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=43.39 E-value=3.5e+02 Score=27.29 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 023729 75 KMLRMRQQFMISQVSFLYPVKI 96 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~ 96 (278)
..|.-+|-.++.||+.+-+|+.
T Consensus 205 ndLlDqRD~ll~~LS~~v~i~v 226 (507)
T PRK07739 205 NDLYDQRDLLLDELSKIVNITV 226 (507)
T ss_pred chhHHHHHHHHHHHHhhcCeEE
Confidence 4688899999999999999993
No 99
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=43.16 E-value=2.1e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSL 40 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l 40 (278)
.-++.|+..+..-...++..+++.+...++-..+....
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a 82 (175)
T PRK14472 45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKA 82 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888777777777777777766666665433
No 100
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=43.13 E-value=2e+02 Score=24.14 Aligned_cols=41 Identities=5% Similarity=0.059 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 43 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~ 43 (278)
.-++.|+..+..-...+++.+++.+..+++...++......
T Consensus 35 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~e 75 (164)
T PRK14471 35 GAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAE 75 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888888887777766444433
No 101
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=42.86 E-value=1.8e+02 Score=23.55 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
..-++.|+..+..-...++.++++.+...++...+......
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ 71 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARK 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888888888888888777776644433
No 102
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=42.73 E-value=3.9e+02 Score=28.89 Aligned_cols=9 Identities=11% Similarity=0.128 Sum_probs=4.1
Q ss_pred HHHHHHhhc
Q 023729 84 MISQVSFLY 92 (278)
Q Consensus 84 lv~el~~Iy 92 (278)
+-.++...|
T Consensus 934 l~~~l~e~~ 942 (1179)
T TIGR02168 934 LEVRIDNLQ 942 (1179)
T ss_pred HHHHHHHHH
Confidence 334455444
No 103
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=42.40 E-value=4.4e+02 Score=28.07 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=16.8
Q ss_pred HhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 023729 52 KRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQV 88 (278)
Q Consensus 52 ~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el 88 (278)
..|++..+.|+. .+.+...-|+.|..|=..+.+.+
T Consensus 589 ~~l~~~ae~Lae--R~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 589 KSLRESAEKLAE--RYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443344443 24444455666665555555544
No 104
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.22 E-value=1.4e+02 Score=31.20 Aligned_cols=16 Identities=13% Similarity=0.318 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023729 24 EDAKNQEERLSMEVRS 39 (278)
Q Consensus 24 ~~i~~~re~l~~~~~~ 39 (278)
.+.+.+|.+|+..|..
T Consensus 96 ~ele~krqel~seI~~ 111 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEE 111 (907)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3445555556555533
No 105
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=42.16 E-value=3.7e+02 Score=28.20 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=12.7
Q ss_pred HHHHHHhcCCCCCCccchHHHHHHH
Q 023729 242 IEQLLNYIGVKSLGPRHVLANLKEL 266 (278)
Q Consensus 242 I~qL~~~~Gl~~~~~~~tL~NL~~L 266 (278)
..||-.++.........++..|..|
T Consensus 607 ~~wl~~yFd~~~~~~~~~~~~L~~L 631 (656)
T PRK06975 607 QAALARYFDTASKDTQTVQDLLKQV 631 (656)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3466666655544444444444444
No 106
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.14 E-value=1.3e+02 Score=21.60 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 54 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l 54 (278)
.+.+++|......|...|.....++..-+..+..+....+.|..+|
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777766666666555544443333333333333
No 107
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=41.98 E-value=1.1e+02 Score=28.66 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 023729 72 KLQKMLRMRQQFMIS 86 (278)
Q Consensus 72 ~l~~~l~~rr~~lv~ 86 (278)
.+.++++..++....
T Consensus 252 ~l~~~v~e~k~~V~~ 266 (279)
T KOG0837|consen 252 KLKEQVAELKQKVME 266 (279)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 108
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.90 E-value=1.2e+02 Score=29.37 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=29.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023729 1 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVA 50 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a 50 (278)
||+|.++.-.+...+...+++..++++....+|...+++|.+....|...
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~n 268 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKN 268 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666555555566666666666666666666665555555444433
No 109
>PLN03086 PRLI-interacting factor K; Provisional
Probab=41.88 E-value=1.4e+02 Score=30.98 Aligned_cols=21 Identities=5% Similarity=0.219 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023729 16 SMRSKVEKEDAKNQEERLSME 36 (278)
Q Consensus 16 ~~~~~~l~~~i~~~re~l~~~ 36 (278)
+.+.++++.|-++++++.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (567)
T PLN03086 6 RRAREKLEREQRERKQRAKLK 26 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.83 E-value=3.1e+02 Score=28.51 Aligned_cols=7 Identities=14% Similarity=0.871 Sum_probs=3.2
Q ss_pred ccCcccC
Q 023729 218 EFPLFLE 224 (278)
Q Consensus 218 ~fPLf~~ 224 (278)
.+|+++|
T Consensus 575 ~~p~iiD 581 (650)
T TIGR03185 575 RLPVIID 581 (650)
T ss_pred CCCEEEc
Confidence 3444444
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.67 E-value=2.4e+02 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG 44 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~ 44 (278)
.+.....++.++......|+.+++...++|..+...+-.-.
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666777666666666666654443333
No 112
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=40.20 E-value=3.1e+02 Score=28.27 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhccccccCC
Q 023729 75 KMLRMRQQFMISQVSFLYPVKILVG 99 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~~~~ 99 (278)
..|.-+|-.|+.||+.+.+|.....
T Consensus 197 NdLlDqRD~Lv~eLs~~i~i~V~~~ 221 (552)
T COG1256 197 NDLLDQRDQLVDELSQLIGISVSKR 221 (552)
T ss_pred hhHHHHHHHHHHHHHhhcceEEEEc
Confidence 4677889999999999999997653
No 113
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=40.01 E-value=3.2e+02 Score=28.73 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhh-hhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 023729 14 KMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGE-KGYGHLQKLQKMLRMRQQFMISQVSFLY 92 (278)
Q Consensus 14 ~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e-~~~~rL~~l~~~l~~rr~~lv~el~~Iy 92 (278)
.+-.+...+...+...|+++..++......-.. .-.+|.+.++.+... ... ..-...|.-+|-.++.||+.+-
T Consensus 139 ~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~---l~~qIA~LN~~I~~~~~~~---g~~~ndLlDqRD~ll~eLS~~v 212 (651)
T PRK06945 139 TLASQFNAAGQQLDQLRQSVNTQLTSSVTQINS---YTKQIAQLNDQIAKAESSQ---GQPPNDLLDQRDQLVSELSKLV 212 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccC---CCCcchhHHHHHHHHHHHHhhc
Confidence 334444455555555666666655444433222 223344433333221 000 0112458889999999999999
Q ss_pred cccccC
Q 023729 93 PVKILV 98 (278)
Q Consensus 93 pI~~~~ 98 (278)
+|+...
T Consensus 213 ~i~v~~ 218 (651)
T PRK06945 213 GVTVVQ 218 (651)
T ss_pred CeEEEE
Confidence 999765
No 114
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=39.63 E-value=5.1e+02 Score=28.96 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 023729 75 KMLRMRQQFMISQVSFLY 92 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~Iy 92 (278)
..++..-..+..+++.+|
T Consensus 535 ~~l~~~~~~s~~d~s~l~ 552 (1041)
T KOG0243|consen 535 TKLRRSLEESQDDLSSLF 552 (1041)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555666666
No 115
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=39.12 E-value=3.3e+02 Score=25.54 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729 31 ERLSMEVRSLLVAGTALSVARKRLQ 55 (278)
Q Consensus 31 e~l~~~~~~l~~~~~~l~~a~~~l~ 55 (278)
++|......|.++...+..++.++.
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~ 231 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERIT 231 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 116
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=38.56 E-value=3.4e+02 Score=27.12 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR 53 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~ 53 (278)
+++.+.+....++..+++.++.+|...+++|..--..+..-+..++....+
T Consensus 52 ~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 52 KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 567788888888888888888888888777766665555555544444433
No 117
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=38.54 E-value=2.3e+02 Score=23.80 Aligned_cols=34 Identities=38% Similarity=0.365 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh
Q 023729 31 ERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK 65 (278)
Q Consensus 31 e~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~ 65 (278)
-+|.+++++|.-|+-|.+....+++. ++.|+.++
T Consensus 50 vrlKQrRRTLKNRGYA~sCR~KRv~Q-k~eLE~~k 83 (135)
T KOG4196|consen 50 VRLKQRRRTLKNRGYAQSCRVKRVQQ-KHELEKEK 83 (135)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 46788999999999888877767664 33344433
No 118
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=38.35 E-value=1.6e+02 Score=26.75 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh-chHHH
Q 023729 26 AKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-YGHLQ 71 (278)
Q Consensus 26 i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~-~~rL~ 71 (278)
.++.++++..-+..+....++|+.|+.+..+.+.+.++-+. +.||.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 33444444444444444555555555555544433333222 44544
No 119
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=38.27 E-value=2.5e+02 Score=23.92 Aligned_cols=49 Identities=24% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR 53 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~ 53 (278)
|+.-+..+.-++.....+.+++.+..+++...+..|..+...+..|...
T Consensus 69 le~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~ 117 (152)
T PF07321_consen 69 LEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQ 117 (152)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555566666666666655555555555555544433
No 120
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.05 E-value=4.1e+02 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729 18 RSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ 55 (278)
Q Consensus 18 ~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~ 55 (278)
+-+.+..-+++.||+|.++++=-....+..+.++.+|.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~ 173 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLE 173 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566788888998888666655566666665543
No 121
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.99 E-value=5.9e+02 Score=29.18 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhc
Q 023729 236 FLLNKDIEQLLNYI 249 (278)
Q Consensus 236 ~LLnknI~qL~~~~ 249 (278)
.=||+-++.++..+
T Consensus 1734 ~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1734 AGLEKRVESVLDHI 1747 (1758)
T ss_pred hhHHHHHHHHHHHH
Confidence 33555555555444
No 122
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.65 E-value=5e+02 Score=29.09 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 48 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~ 48 (278)
+.++.++...++.+++.+.+++..-+..+..+++...
T Consensus 318 ~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~ 354 (1074)
T KOG0250|consen 318 LTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN 354 (1074)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544444333
No 123
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=37.63 E-value=1.2e+02 Score=27.05 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023729 18 RSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 18 ~~~~l~~~i~~~re~l~~~~ 37 (278)
..++|+.++++.|++|..++
T Consensus 126 ~~~~L~~el~~~k~~L~~rK 145 (194)
T COG3707 126 ERRALRRELAKLKDRLEERK 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777666
No 124
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=37.04 E-value=3.6e+02 Score=25.29 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=5.0
Q ss_pred ccCCcceeec
Q 023729 184 LGGSHTYIND 193 (278)
Q Consensus 184 ~~gSrSyI~d 193 (278)
+.|.=++|..
T Consensus 277 ~~G~V~~Is~ 286 (346)
T PRK10476 277 FEGKVDSIGW 286 (346)
T ss_pred EEEEEEEECC
Confidence 4455555553
No 125
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=36.96 E-value=4.2e+02 Score=28.13 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
+|++..+.+.++-..++.-+..+....|.|+.+.
T Consensus 133 qVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel 166 (861)
T KOG1899|consen 133 QVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL 166 (861)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH
Confidence 4555555555555555555555555555555543
No 126
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.95 E-value=4e+02 Score=27.87 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFM 84 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~l 84 (278)
++++.++-+....++-.|..+.+..|.+|...+.. ...+....+++.+.+..++..+ .||+.=-+.+.-|-++|
T Consensus 95 LqESaakE~~yl~kI~eleneLKq~r~el~~~q~E----~erl~~~~sd~~e~~~~~E~qR--~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 95 LQESAAKEEYYLQKILELENELKQLRQELTNVQEE----NERLEKVHSDLKESNAAVEDQR--RRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcchhhHHHH--HHHHHHHHHHHHHHHHH
Confidence 45555555555555666666655555444433311 1122333344444444444432 33442223344444445
Q ss_pred HHHHHh
Q 023729 85 ISQVSF 90 (278)
Q Consensus 85 v~el~~ 90 (278)
+++-+.
T Consensus 169 lseYSE 174 (772)
T KOG0999|consen 169 LSEYSE 174 (772)
T ss_pred HHHHHH
Confidence 555443
No 127
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=36.72 E-value=4.7e+02 Score=31.29 Aligned_cols=56 Identities=21% Similarity=0.166 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQES 57 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~ 57 (278)
..+++.-..-+.++.-.++.|...|++..|+|...+.+.....++.+.-...+++.
T Consensus 1082 ~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l 1137 (1930)
T KOG0161|consen 1082 QSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEEL 1137 (1930)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777778888888888888777766666655444444444433
No 128
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=36.55 E-value=1.7e+02 Score=29.26 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhh
Q 023729 11 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 62 (278)
Q Consensus 11 ~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~ 62 (278)
|.+.+..+++.+.+++++..++|..+.+++..+-.+|+.+-.+++.....|.
T Consensus 407 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~ 458 (462)
T PRK08032 407 ATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLT 458 (462)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777777777777777777777777777777888877777775444443
No 129
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=36.49 E-value=3.5e+02 Score=26.74 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 023729 75 KMLRMRQQFMISQVSFLYPVKIL 97 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~~ 97 (278)
..|.-+|..++.||+.+-+|+..
T Consensus 196 ndL~DqRD~ll~eLS~~i~i~v~ 218 (431)
T PRK06799 196 NQLLDERDRILTEMSKYANIEVS 218 (431)
T ss_pred hhhHHHHHHHHHHHHhhcCeEEE
Confidence 46888999999999999999864
No 130
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=36.10 E-value=2.7e+02 Score=29.21 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 36 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~ 36 (278)
|..+++++---.++..+++++.+++++.|.++-..
T Consensus 342 rgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 342 RGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666444333
No 131
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.25 E-value=4.2e+02 Score=26.72 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 023729 79 MRQQFMISQVS 89 (278)
Q Consensus 79 ~rr~~lv~el~ 89 (278)
.||..||+++.
T Consensus 306 erRealcr~ls 316 (552)
T KOG2129|consen 306 ERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHhh
Confidence 45556666654
No 132
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=35.22 E-value=3.9e+02 Score=27.88 Aligned_cols=76 Identities=8% Similarity=0.039 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPV 94 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~IypI 94 (278)
|-.+...+...+...|+++..++......-. .--.+|.+.++.+....+ .....|.-.|-.++.||+.+-+|
T Consensus 139 La~~f~~~~~~L~~~~~~~n~~i~~~V~~IN---~l~~~IA~LN~~I~~~~~-----~~~ndLlDqRD~ll~eLS~~v~v 210 (624)
T PRK12714 139 LATRFKQLNGQMDSLSNEVNSGLTSSVDEVN---RLTQQIAKINGTIGSSAQ-----NAAPDLLDQRDALVSKLVGYTGG 210 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC-----CCchhhHHHHHHHHHHHHhhcCe
Confidence 3344445555555566666666544443322 222344444444322111 11356888999999999999999
Q ss_pred cccC
Q 023729 95 KILV 98 (278)
Q Consensus 95 ~~~~ 98 (278)
+.+.
T Consensus 211 ~v~~ 214 (624)
T PRK12714 211 TAVI 214 (624)
T ss_pred EEEE
Confidence 8654
No 133
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=35.07 E-value=1.5e+02 Score=28.25 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh------chHHHHHHHHHHHHHHHHHHHHHhhc
Q 023729 33 LSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG------YGHLQKLQKMLRMRQQFMISQVSFLY 92 (278)
Q Consensus 33 l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~------~~rL~~l~~~l~~rr~~lv~el~~Iy 92 (278)
|-..-.+|.+...++.+|+.+++.+-.+|...+. +.+.+.+-..+...-+.|+..|...|
T Consensus 1 l~~mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rY 66 (324)
T PF12126_consen 1 LDAMTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARY 66 (324)
T ss_pred CcHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 134
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=34.14 E-value=1.5e+02 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023729 19 SKVEKEDAKNQEERLSMEVRSLLVAGT 45 (278)
Q Consensus 19 ~~~l~~~i~~~re~l~~~~~~l~~~~~ 45 (278)
.+.++.+|+..|++|..-+..|..+-+
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 467788899999999988888887764
No 135
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=33.94 E-value=5e+02 Score=29.07 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023729 230 RAAYAVFLLNKDIEQLLN 247 (278)
Q Consensus 230 ~F~yav~LLnknI~qL~~ 247 (278)
-|+-++.-|..-++.+=.
T Consensus 658 s~d~~ie~le~e~~~l~~ 675 (1074)
T KOG0250|consen 658 SFDDEIEDLEREASRLQK 675 (1074)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 455566656555554433
No 136
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.88 E-value=4.2e+02 Score=30.80 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=7.7
Q ss_pred hhHHHHHHHhHHHHHHHh
Q 023729 44 GTALSVARKRLQESNRLL 61 (278)
Q Consensus 44 ~~~l~~a~~~l~e~~~~L 61 (278)
.+.+..+...+++++..|
T Consensus 1026 ksslq~~~e~L~E~eqe~ 1043 (1486)
T PRK04863 1026 KSSYDAKRQMLQELKQEL 1043 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 137
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.71 E-value=4.9e+02 Score=25.95 Aligned_cols=82 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 023729 1 MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMR 80 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~r 80 (278)
+...+++...+..++..+...+++.+...++.+...+.......+.++.......+...-|.... ..|..+....+.-
T Consensus 321 ~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~--~~l~~~~~~~~~~ 398 (562)
T PHA02562 321 AIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ--DELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH--HHHHHHHHHHHHH
Q ss_pred HHHH
Q 023729 81 QQFM 84 (278)
Q Consensus 81 r~~l 84 (278)
....
T Consensus 399 ~ke~ 402 (562)
T PHA02562 399 VKEK 402 (562)
T ss_pred HHHH
No 138
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=33.49 E-value=5e+02 Score=25.94 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhc
Q 023729 77 LRMRQQFMISQVSFLY 92 (278)
Q Consensus 77 l~~rr~~lv~el~~Iy 92 (278)
|...|+.+..|+..+|
T Consensus 156 l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 156 LAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555544444
No 139
>PRK11546 zraP zinc resistance protein; Provisional
Probab=33.21 E-value=1.8e+02 Score=24.64 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 023729 70 LQKLQKMLRMRQQFMISQVSFL 91 (278)
Q Consensus 70 L~~l~~~l~~rr~~lv~el~~I 91 (278)
+..|+.+|...|-.+=.+++..
T Consensus 98 I~~Lr~kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 98 MENLRQSLDELRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566666666666666654
No 140
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=33.11 E-value=4.2e+02 Score=27.85 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023729 14 KMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYP 93 (278)
Q Consensus 14 ~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~Iyp 93 (278)
.+-.+...+...+++.|+++..++......- ..--.+|.+.+..+.+-. -...|.-+|-.++.||+.+-+
T Consensus 138 ~L~~~fn~~~~~L~~~~~~~n~~I~~~V~~i---N~l~~qIA~LN~qI~~~~-------~~ndLlDqRD~ll~eLS~~v~ 207 (649)
T PRK12715 138 LLAQQFNSLQTKLEEYERNSTLQVTESVKII---NRITKELAEVNGKLLGNN-------NIPELLDHRDELLKQLSGYTD 207 (649)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCC-------CchHhHHHHHHHHHHHHhhcC
Confidence 3444445555566666666666664444332 223334555544443311 123688999999999999999
Q ss_pred ccccC
Q 023729 94 VKILV 98 (278)
Q Consensus 94 I~~~~ 98 (278)
|+...
T Consensus 208 v~v~~ 212 (649)
T PRK12715 208 LSIFD 212 (649)
T ss_pred eEEEE
Confidence 99754
No 141
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.53 E-value=5.5e+02 Score=26.09 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHcCC
Q 023729 163 IAHVVSLIASYLEV 176 (278)
Q Consensus 163 vahlv~lls~yL~v 176 (278)
-.|+-.+=.|+=++
T Consensus 281 k~H~~svr~HI~~L 294 (475)
T PRK10361 281 QEHIASVRNHIRLL 294 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 34554444554433
No 142
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=32.51 E-value=3.3e+02 Score=26.03 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=3.0
Q ss_pred ceEEec
Q 023729 128 SLTILG 133 (278)
Q Consensus 128 ~~tI~G 133 (278)
.++|.+
T Consensus 199 l~~i~~ 204 (385)
T PRK09859 199 LVTVQR 204 (385)
T ss_pred eEEEEe
Confidence 455543
No 143
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=32.29 E-value=3.2e+02 Score=23.32 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
.-+++|+.++..=...+++++++.+..+++-...+
T Consensus 31 ~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L 65 (154)
T PRK06568 31 NSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQI 65 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888777776666655
No 144
>PRK06798 fliD flagellar capping protein; Validated
Probab=32.15 E-value=2.1e+02 Score=28.49 Aligned_cols=48 Identities=6% Similarity=-0.024 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQES 57 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~ 57 (278)
.|++.+..+++.+.+++++..+++..+.+++...-.+|+.+=.+|+..
T Consensus 379 ~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ 426 (440)
T PRK06798 379 ERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQ 426 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777777777777666643
No 145
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=31.83 E-value=5.3e+02 Score=25.73 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
+.|+.+-++...++..+..+..++|.+....|.+-.+++......|-.|+.+|..
T Consensus 277 ~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~ 331 (421)
T KOG2685|consen 277 KKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLEN 331 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5688888888999999999999999999999999888888888888888888764
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.67 E-value=4.5e+02 Score=24.82 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
..+.+....++.+..++.+++++|..++..|..
T Consensus 166 ~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 166 AKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555554444433
No 147
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.66 E-value=3.3e+02 Score=23.34 Aligned_cols=40 Identities=8% Similarity=0.070 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
.-++.|+.++..=...+++.+++.++.+++...+......
T Consensus 37 ~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~ 76 (155)
T PRK06569 37 EIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNT 76 (155)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888887776666644433
No 148
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=31.54 E-value=2.9e+02 Score=22.68 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-++.|+.++..-...++..+++++...++...+.....
T Consensus 31 ~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~ 69 (156)
T PRK05759 31 KALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEAR 69 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888887777777777777777777666664433
No 149
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.46 E-value=3.6e+02 Score=24.54 Aligned_cols=92 Identities=23% Similarity=0.247 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHH---hHHHHHHHhhhhhh--------chH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQ---EERLSMEVRSLLVAGTALSVARK---RLQESNRLLAGEKG--------YGH 69 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~---re~l~~~~~~l~~~~~~l~~a~~---~l~e~~~~L~~e~~--------~~r 69 (278)
|.+.+.+..+++-.|..++..=+.-- .|.+.+-+..|..+++.|-+|.+ .|. .++.++..+. |.-
T Consensus 53 r~elkseLlKelerQ~q~l~~w~~vpgvDqe~ldal~~el~~a~~~L~sa~r~GQ~l~-edr~is~iRqR~~iPGG~C~F 131 (244)
T COG4582 53 RGEVRTELLKELDRQQQKLQTWIGVPGVDQERLDALIQQLKAAGSVLISAPRIGQSLR-EDRLIALVRQRLSIPGGCCSF 131 (244)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHhhhhhhcchhhHhHhh-hhHHHHHHHHHccCCCccccc
Confidence 44445555555555544444211110 15566667777788888777662 222 2345554441 110
Q ss_pred ----HH-HHHHHHHHHHHHHHHHHHhhccccc
Q 023729 70 ----LQ-KLQKMLRMRQQFMISQVSFLYPVKI 96 (278)
Q Consensus 70 ----L~-~l~~~l~~rr~~lv~el~~IypI~~ 96 (278)
|. |++-....|++...+=++.+-|+..
T Consensus 132 DLPalh~WlH~p~e~r~adi~kw~~sl~PL~~ 163 (244)
T COG4582 132 DLPTLHIWLHLPQEQRDADIEKWIASLNPLTQ 163 (244)
T ss_pred CcHHHHHHHhCcHHHHHHHHHHHHhhcchHHH
Confidence 22 8888889999999998888888875
No 150
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=31.18 E-value=2.6e+02 Score=21.99 Aligned_cols=84 Identities=8% Similarity=0.116 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhHHHHH-HHhhhhhh--chHHHHHHHHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG-TALSVARKRLQESN-RLLAGEKG--YGHLQKLQKMLRMRQ 81 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~-~~l~~a~~~l~e~~-~~L~~e~~--~~rL~~l~~~l~~rr 81 (278)
+.|+..+..-...++.++++++...++...++....... ..+..|.....+.. +.+...+. ...+...+..+...+
T Consensus 29 ~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~ 108 (132)
T PF00430_consen 29 DERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEK 108 (132)
T ss_dssp S--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555566666655555555553333222 22223333322211 11211111 122345556666666
Q ss_pred HHHHHHHH
Q 023729 82 QFMISQVS 89 (278)
Q Consensus 82 ~~lv~el~ 89 (278)
..+..++.
T Consensus 109 ~~a~~~l~ 116 (132)
T PF00430_consen 109 EKAKKELR 116 (132)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 66666654
No 151
>PRK15396 murein lipoprotein; Provisional
Probab=31.16 E-value=2.4e+02 Score=21.48 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
..-++.+....+.+..++.+.|..+
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~ 55 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDV 55 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 152
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=30.84 E-value=2.6e+02 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 023729 24 EDAKNQEERLSMEV 37 (278)
Q Consensus 24 ~~i~~~re~l~~~~ 37 (278)
++++++++++..-.
T Consensus 26 EElRk~eeqi~~L~ 39 (214)
T PF07795_consen 26 EELRKREEQIAHLK 39 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 153
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=30.76 E-value=2.6e+02 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHHHHhHHHHHHHh
Q 023729 46 ALSVARKRLQESNRLL 61 (278)
Q Consensus 46 ~l~~a~~~l~e~~~~L 61 (278)
+..+|+..-..+++-|
T Consensus 53 aa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 53 QIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3334443333344333
No 154
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.44 E-value=4.1e+02 Score=23.96 Aligned_cols=28 Identities=4% Similarity=0.037 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 8 RRLLMEKMSMRSKVEKEDAKNQEERLSM 35 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~i~~~re~l~~ 35 (278)
.+.+++++..+...+.++++..+.++..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~ 67 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIEN 67 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443333
No 155
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.75 E-value=5.8e+02 Score=28.37 Aligned_cols=18 Identities=39% Similarity=0.254 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHccCCCcc
Q 023729 259 VLANLKELLRTIQSPEYI 276 (278)
Q Consensus 259 tL~NL~~Ll~~~~s~~~~ 276 (278)
++.-+-+||..-|-++..
T Consensus 711 ~lD~~ieLLkk~qlDEnt 728 (1243)
T KOG0971|consen 711 SLDFLIELLKKDQLDENT 728 (1243)
T ss_pred HHHHHHHHHhhccccccc
Confidence 455666666666666543
No 156
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.68 E-value=4.8e+02 Score=25.36 Aligned_cols=20 Identities=10% Similarity=0.136 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023729 15 MSMRSKVEKEDAKNQEERLS 34 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~ 34 (278)
...+.+++..++.+.-|+|.
T Consensus 239 ~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 239 TKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 157
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=29.63 E-value=1.2e+02 Score=28.05 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
++++..-+.+-.++...++.++++|...+++|...-
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777777777777777777777777777777765
No 158
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.40 E-value=2.3e+02 Score=28.84 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=2.9
Q ss_pred HHhhccc
Q 023729 88 VSFLYPV 94 (278)
Q Consensus 88 l~~IypI 94 (278)
|..||-+
T Consensus 437 l~~L~e~ 443 (508)
T KOG3091|consen 437 LDELYEI 443 (508)
T ss_pred HHHHHHH
Confidence 3444433
No 159
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=29.15 E-value=2.4e+02 Score=23.11 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=29.3
Q ss_pred hhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023729 2 RERLEARRL----LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGT 45 (278)
Q Consensus 2 ~~~~~~~~~----~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~ 45 (278)
+|.+++.+. |++=|...++++...+++..+++...+.++.....
T Consensus 64 kqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~ 111 (120)
T KOG3478|consen 64 KQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQ 111 (120)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555443 56667777777777777777777777766665443
No 160
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.10 E-value=3.3e+02 Score=22.46 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
+.-....+.+.....++..++......+..-...+....+.+..+..+....+..+..
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666655444444444444445455554444444444433
No 161
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=28.63 E-value=2.1e+02 Score=20.08 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhh
Q 023729 13 EKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLA 62 (278)
Q Consensus 13 ~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~ 62 (278)
+.-...++...+--....++|..+++.|......+......+..++..+.
T Consensus 11 ~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~ 60 (66)
T PF12352_consen 11 QRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLK 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333333334445555555555445555555555555554444
No 162
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.41 E-value=1.6e+02 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023729 19 SKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 19 ~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
+..-.++.+++..+|..++..|.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555554444
No 163
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.21 E-value=6.9e+02 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
++......++...+++|++++++.|..+
T Consensus 102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 102 DETARERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344444444455555555444333
No 164
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.14 E-value=4.1e+02 Score=23.27 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 24 EDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 24 ~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
.+++.+|.++...-..|..+...|......|..
T Consensus 71 ~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~ 103 (201)
T PF12072_consen 71 RELKERRKELQRLEKRLQQREEQLDRRLEQLEK 103 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 165
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.93 E-value=9.4e+02 Score=27.60 Aligned_cols=9 Identities=0% Similarity=-0.001 Sum_probs=3.8
Q ss_pred HHHHHhhcc
Q 023729 85 ISQVSFLYP 93 (278)
Q Consensus 85 v~el~~Iyp 93 (278)
..+++.-|.
T Consensus 986 ~~e~~~~~~ 994 (1353)
T TIGR02680 986 LREFALTGL 994 (1353)
T ss_pred HHHHhhcCc
Confidence 344443333
No 166
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.83 E-value=1.9e+02 Score=20.83 Aligned_cols=27 Identities=4% Similarity=-0.036 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEE 31 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re 31 (278)
|++-..|+..|...+.+++.++.+++-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSA 49 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665553
No 167
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=27.46 E-value=7.3e+02 Score=25.90 Aligned_cols=21 Identities=5% Similarity=0.068 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQ 29 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~ 29 (278)
+..++++..++..+..+++..
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l 354 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKML 354 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333
No 168
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.45 E-value=7.1e+02 Score=25.94 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccC
Q 023729 75 KMLRMRQQFMISQVSFLYPVKILV 98 (278)
Q Consensus 75 ~~l~~rr~~lv~el~~IypI~~~~ 98 (278)
..|.-+|-.++.||+.+-+|+...
T Consensus 200 ndL~DqRD~ll~eLS~~v~v~v~~ 223 (613)
T PRK08471 200 NELRDKRDELELTLSKLVGANVFK 223 (613)
T ss_pred hhhHHHHHHHHHHHHhhcCeEEEe
Confidence 468889999999999999998753
No 169
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=27.16 E-value=8e+02 Score=26.30 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 023729 230 RAAYAVFLLNKDIEQLLNYI 249 (278)
Q Consensus 230 ~F~yav~LLnknI~qL~~~~ 249 (278)
.|..-|..|-.+|.+|.+-+
T Consensus 304 ~q~eki~~L~e~l~aL~~l~ 323 (717)
T PF09730_consen 304 EQQEKINRLTEQLDALRKLQ 323 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 45556777777788877744
No 170
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=27.06 E-value=4.4e+02 Score=24.53 Aligned_cols=9 Identities=22% Similarity=0.368 Sum_probs=3.7
Q ss_pred ccCCcceee
Q 023729 184 LGGSHTYIN 192 (278)
Q Consensus 184 ~~gSrSyI~ 192 (278)
+.|.=.+|.
T Consensus 222 ~~G~V~~I~ 230 (310)
T PRK10559 222 LKGTVDSVA 230 (310)
T ss_pred EEEEEEEEC
Confidence 344444444
No 171
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=26.89 E-value=5.2e+02 Score=28.40 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 60 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~ 60 (278)
+++.+.-+++.......+.++.+..=+++..++-.+..-+++-++|+..|+++.+.
T Consensus 370 i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 370 IQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Confidence 33333333344333333444333344455555555555555656666555554433
No 172
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.49 E-value=5.2e+02 Score=24.57 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTA 46 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~ 46 (278)
+..+++.|++.++...|.+....+.....-++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~e 141 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRE 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555444333
No 173
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=26.31 E-value=2.8e+02 Score=29.20 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
.|++-+..+++.+.+++++..++|..+..+|...-.+|+.+-.+|+....-|+.
T Consensus 600 ~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~ 653 (661)
T PRK06664 600 NKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKN 653 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777888888888888888888888888888888888887765444443
No 174
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=26.24 E-value=6e+02 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
+.||..+.....++.++-+..+++|..+....-
T Consensus 7 k~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e 39 (328)
T PF15369_consen 7 KRRIANLIKELARVSEEKEVTEERLKAEQESFE 39 (328)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 556667766666666666666666666654433
No 175
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=26.22 E-value=5e+02 Score=27.82 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=10.0
Q ss_pred HHHHHHHhHHHHHHHhhhh
Q 023729 46 ALSVARKRLQESNRLLAGE 64 (278)
Q Consensus 46 ~l~~a~~~l~e~~~~L~~e 64 (278)
++..+..+|.+.+..|...
T Consensus 145 d~~~~a~~l~~m~~sL~~l 163 (766)
T PF10191_consen 145 DIAKIADRLAEMQRSLAVL 163 (766)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4445555566555554443
No 176
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.12 E-value=6.3e+02 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEE 31 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re 31 (278)
|.-|++++.-+++++.+.++|..+.-..++
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455777777777777777777776665554
No 177
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=25.76 E-value=4e+02 Score=24.15 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Q 023729 22 EKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNR 59 (278)
Q Consensus 22 l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~ 59 (278)
|..-..+.+|+++.+.+.+..-..=|..|.+.=.||++
T Consensus 17 LE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~ 54 (214)
T PF07795_consen 17 LEATKMEANEELRKREEQIAHLKDLLKKAYQERDEARE 54 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333346677777776666555555544444344433
No 178
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=25.46 E-value=4e+02 Score=22.18 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
.-++.|+..+..-...++..+++.+..+++-..+.....
T Consensus 29 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~ 67 (159)
T PRK09173 29 RSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAE 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888877777666664443
No 179
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=25.39 E-value=3.7e+02 Score=21.85 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
+.-++.|+..+..-...++..+++....+++...+.....
T Consensus 21 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~ 60 (147)
T TIGR01144 21 AKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAK 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888887777777777777777766666654433
No 180
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.39 E-value=7.6e+02 Score=25.47 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 023729 234 AVFLLNKDIEQLLNYIG 250 (278)
Q Consensus 234 av~LLnknI~qL~~~~G 250 (278)
+-+-+.+.|++.+....
T Consensus 471 ~~~~~~~~i~~~l~~i~ 487 (555)
T TIGR03545 471 GSFEATKYILQVLKKID 487 (555)
T ss_pred CccHHHHHHHHHHhhCC
Confidence 45667777777776543
No 181
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.91 E-value=1.1e+03 Score=27.47 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 023729 234 AVFLLNKDIEQLLNYIGVK 252 (278)
Q Consensus 234 av~LLnknI~qL~~~~Gl~ 252 (278)
-|..|...-+++-...|.+
T Consensus 808 ~~~~~~r~~~~~~~~~~~~ 826 (1486)
T PRK04863 808 DVQKLQRLHQAFSRFIGSH 826 (1486)
T ss_pred hHHHHHHHHHHHHHHHhhC
Confidence 4555666555555545544
No 182
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=24.87 E-value=5.1e+02 Score=23.23 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhh----hHHHHHHHhHHHHHHHhhhhhhchHHH-HHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQE------ERLSMEVRSLLVAG----TALSVARKRLQESNRLLAGEKGYGHLQ-KLQKMLRMR 80 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~r------e~l~~~~~~l~~~~----~~l~~a~~~l~e~~~~L~~e~~~~rL~-~l~~~l~~r 80 (278)
+.++.......++-|++|. +..+++...|..+. ..|..|..+++++++.-+..+ ..|+ .|-..+..|
T Consensus 101 l~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN--~~Lk~ELP~l~~~r 178 (224)
T cd07591 101 IGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLN--DQLKTELPQLVDLR 178 (224)
T ss_pred HHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHH
Confidence 4455555666666676665 56666666666543 345566666666555444432 2232 444445555
Q ss_pred HHHHHHHHHhhcccc
Q 023729 81 QQFMISQVSFLYPVK 95 (278)
Q Consensus 81 r~~lv~el~~IypI~ 95 (278)
-.++.-=+..+|.|.
T Consensus 179 ~~~l~~~f~s~~~iQ 193 (224)
T cd07591 179 IPYLDPSFEAFVKIQ 193 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 183
>PRK10869 recombination and repair protein; Provisional
Probab=24.67 E-value=7.7e+02 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023729 24 EDAKNQEERLSMEVRSLLVAGTALSVAR 51 (278)
Q Consensus 24 ~~i~~~re~l~~~~~~l~~~~~~l~~a~ 51 (278)
++|-+.++++..+...+......++.-.
T Consensus 320 ~~~~~~~~~l~~eL~~L~~~e~~l~~Le 347 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDDQEDDLETLA 347 (553)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4444445555555544444333333333
No 184
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.63 E-value=8e+02 Score=25.42 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVAR 51 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~ 51 (278)
.-+++......++..+|.+.++++..-+..+..+-+.+..++
T Consensus 99 ~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~r 140 (546)
T KOG0977|consen 99 KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAR 140 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Confidence 344555555556666666666666665555555543333333
No 185
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.60 E-value=8.4e+02 Score=27.42 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHhc
Q 023729 230 RAAYAVFLLNKDIEQLLNYI 249 (278)
Q Consensus 230 ~F~yav~LLnknI~qL~~~~ 249 (278)
.|.-+-+-|++|.+++...-
T Consensus 816 s~sse~esl~rDl~a~~rel 835 (1195)
T KOG4643|consen 816 SCSSECESLRRDLVATRREL 835 (1195)
T ss_pred hhcchhhhhhhhHHHhhhhh
Confidence 56667778888887766543
No 186
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.35 E-value=5.3e+02 Score=26.35 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023729 8 RRLLMEKMSMRSKVE 22 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l 22 (278)
.+.|++.|.....+|
T Consensus 353 ~r~ri~~i~e~v~eL 367 (508)
T KOG3091|consen 353 HRIRINAIGERVTEL 367 (508)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 187
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=24.00 E-value=3e+02 Score=20.20 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
+++|..-..+|..+++...++|+.-+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~V 46 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKLV 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777665
No 188
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.99 E-value=7.7e+02 Score=25.03 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhcc
Q 023729 78 RMRQQFMISQVSFLYP 93 (278)
Q Consensus 78 ~~rr~~lv~el~~Iyp 93 (278)
...|..|-.|+..+--
T Consensus 164 ~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 164 AQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666665543
No 189
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=23.87 E-value=4.4e+02 Score=22.12 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 023729 18 RSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 54 (278)
Q Consensus 18 ~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l 54 (278)
+.+.++.+++.....+......+..+.+.+.......
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455555666665555555555555555555554444
No 190
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=23.71 E-value=4.2e+02 Score=21.92 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 11 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 11 ~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
-...+-.+.+.+.+.+.+.|++|.+|++.|-..-.+..+.+..+++
T Consensus 44 A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~ 89 (126)
T PF07889_consen 44 AVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKD 89 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456677888899999999999999998888776666666655554
No 191
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.67 E-value=89 Score=24.39 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023729 17 MRSKVEKEDAKNQEERLSME 36 (278)
Q Consensus 17 ~~~~~l~~~i~~~re~l~~~ 36 (278)
...++|.+||+.+|++|+++
T Consensus 68 eA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 68 EAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45667778888888877765
No 192
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=23.63 E-value=5.9e+02 Score=24.25 Aligned_cols=6 Identities=17% Similarity=-0.086 Sum_probs=2.9
Q ss_pred ceEEec
Q 023729 128 SLTILG 133 (278)
Q Consensus 128 ~~tI~G 133 (278)
.++|.+
T Consensus 201 l~~i~~ 206 (385)
T PRK09578 201 LTTVEQ 206 (385)
T ss_pred eEEEEe
Confidence 455543
No 193
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.42 E-value=4.8e+02 Score=22.46 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEK----EDAKNQEERLSMEVRSLLVAGTALSVARKRLQESN 58 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~----~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~ 58 (278)
|+++-..|+.+|+-..+.+. ++|..-|..|-.--+.|...+...........++-
T Consensus 60 rveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykeal 118 (159)
T PF04949_consen 60 RVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEAL 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444443332 33333444444334444444444444443344333
No 194
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.32 E-value=4.9e+02 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKN 28 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~ 28 (278)
|++|+...-|+++---+...++++++-
T Consensus 51 rekVq~~LgrveEetkrLa~ireeLE~ 77 (159)
T PF04949_consen 51 REKVQAQLGRVEEETKRLAEIREELEV 77 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 566777777777766666666666653
No 195
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=23.25 E-value=3.5e+02 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 023729 22 EKEDAKNQEERLSM 35 (278)
Q Consensus 22 l~~~i~~~re~l~~ 35 (278)
..+.|++.|++|..
T Consensus 34 A~qAve~Ar~ql~~ 47 (79)
T PF10819_consen 34 ATQAVEDAREQLSQ 47 (79)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 196
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=23.21 E-value=2.3e+02 Score=30.31 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
+++|+.--++++++|+.+||+|++..
T Consensus 19 vsEIr~ve~~ir~~iE~KrEELRqmV 44 (863)
T KOG2033|consen 19 VSEIREVEKKIRSVIEGKREELRQMV 44 (863)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 67888889999999999999998876
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.11 E-value=8.9e+02 Score=25.42 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhcC
Q 023729 237 LLNKDIEQLLNYIG 250 (278)
Q Consensus 237 LLnknI~qL~~~~G 250 (278)
-+.-|+++.+...|
T Consensus 562 t~a~nLA~~lA~~g 575 (754)
T TIGR01005 562 DIEANAAALIASGG 575 (754)
T ss_pred HHHHHHHHHHHhCC
Confidence 34445555554444
No 198
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=22.98 E-value=6e+02 Score=23.37 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVS 89 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~ 89 (278)
..++++..+...+.+++....++|..-++.+..-...++.+.-+|...-+.+..-- +.|..+|..|-.=|.
T Consensus 31 ~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s---------~tL~~~~~~L~~lL~ 101 (267)
T PF11887_consen 31 EQLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTS---------RTLVDQRQQLDALLL 101 (267)
T ss_pred hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---------HHHHHhHHHHHHHHH
Q ss_pred hh
Q 023729 90 FL 91 (278)
Q Consensus 90 ~I 91 (278)
.+
T Consensus 102 ~~ 103 (267)
T PF11887_consen 102 SA 103 (267)
T ss_pred HH
No 199
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=22.81 E-value=3.9e+02 Score=21.21 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=18.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729 21 VEKEDAKNQE---ERLSMEVRSLLVAGTALSVARKRLQ 55 (278)
Q Consensus 21 ~l~~~i~~~r---e~l~~~~~~l~~~~~~l~~a~~~l~ 55 (278)
+..++.+++| |.|+.+...+.+++.+|.+.+..-.
T Consensus 50 ~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlDalR~eH~ 87 (96)
T PF12210_consen 50 KYIQEQEEKRVYYEGLQDKLAQIKEARAALDALREEHR 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 6666666665556555555544333
No 200
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.80 E-value=5e+02 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023729 11 LMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 48 (278)
Q Consensus 11 ~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~ 48 (278)
.+......++.+..++...++++......+.....+++
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444443333
No 201
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=22.76 E-value=2.1e+02 Score=18.14 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023729 23 KEDAKNQEERLSMEVRSL 40 (278)
Q Consensus 23 ~~~i~~~re~l~~~~~~l 40 (278)
++..++++|+|..+.+.|
T Consensus 10 keqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 10 KEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666666544
No 202
>PF13125 DUF3958: Protein of unknown function (DUF3958)
Probab=22.69 E-value=2.7e+02 Score=22.26 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhhhchHHHHHHHHHHHHHHHHH
Q 023729 54 LQESNRLLAGEKGYGHLQKLQKMLRMRQQFMI 85 (278)
Q Consensus 54 l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv 85 (278)
|++.++.|-.++ -.|.++...+...|+.|.
T Consensus 68 LE~qkE~LlkEk--R~L~d~E~~l~yq~q~L~ 97 (99)
T PF13125_consen 68 LEEQKETLLKEK--RDLSDLENDLSYQQQQLA 97 (99)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 444444444333 334444444444444443
No 203
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.46 E-value=7e+02 Score=25.37 Aligned_cols=9 Identities=33% Similarity=0.158 Sum_probs=5.4
Q ss_pred CcceeecCC
Q 023729 187 SHTYINDYA 195 (278)
Q Consensus 187 SrSyI~d~~ 195 (278)
..-+|.|++
T Consensus 463 ~~~lilDEp 471 (563)
T TIGR00634 463 VTTLIFDEV 471 (563)
T ss_pred CCEEEEECC
Confidence 345667775
No 204
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.44 E-value=5e+02 Score=22.30 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA 43 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~ 43 (278)
+.-+.-++++...+....++|++....-+..+..|..-
T Consensus 30 ~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eV 67 (159)
T PF05384_consen 30 ERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEV 67 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443333333334333
No 205
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=22.32 E-value=4.1e+02 Score=23.68 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 39 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~ 39 (278)
-++-+.++.+.|..+++.++++|...+|+|...+.+
T Consensus 76 ~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~ 111 (209)
T COG5124 76 TLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKAT 111 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 467788999999999999999999999999988744
No 206
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.30 E-value=1.1e+03 Score=26.34 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=4.5
Q ss_pred CcceeecCC
Q 023729 187 SHTYINDYA 195 (278)
Q Consensus 187 SrSyI~d~~ 195 (278)
|.-||.|.+
T Consensus 1089 aPf~vLDEV 1097 (1163)
T COG1196 1089 APFYVLDEV 1097 (1163)
T ss_pred CCeeeeccc
Confidence 444555554
No 207
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.11 E-value=4.8e+02 Score=27.44 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=9.3
Q ss_pred hHHHHHHHhHHHHHHHhhhh
Q 023729 45 TALSVARKRLQESNRLLAGE 64 (278)
Q Consensus 45 ~~l~~a~~~l~e~~~~L~~e 64 (278)
++.+.-..+++|.++.+..+
T Consensus 107 seI~~~n~kiEelk~~i~~~ 126 (907)
T KOG2264|consen 107 SEIEEINTKIEELKRLIPQK 126 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555544443
No 208
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.93 E-value=8.9e+02 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhccccc
Q 023729 80 RQQFMISQVSFLYPVKI 96 (278)
Q Consensus 80 rr~~lv~el~~IypI~~ 96 (278)
.-+.=...|...|.+.+
T Consensus 259 ap~~D~~~L~~~~~~~~ 275 (555)
T TIGR03545 259 APQNDLKRLENKYAIKS 275 (555)
T ss_pred ccHhHHHHHHHHhCCCc
Confidence 33344455667777654
No 209
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=21.77 E-value=2.9e+02 Score=19.32 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRL 54 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l 54 (278)
.++.+...++++.........+....||.|..-...+..-.+.+..+..=|
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l 59 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLL 59 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455555666666666666666666666666666555555555555544433
No 210
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.75 E-value=3.1e+02 Score=19.63 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 023729 70 LQKLQKMLRMRQQF 83 (278)
Q Consensus 70 L~~l~~~l~~rr~~ 83 (278)
...+...+..|+..
T Consensus 89 w~~l~~~~~~r~~~ 102 (105)
T PF00435_consen 89 WEALCELVEERRQK 102 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555543
No 211
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.44 E-value=5.1e+02 Score=21.97 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
+...-..+.+.|+.+.++|..-+
T Consensus 47 Lkien~~l~~kIeERn~eL~~Lk 69 (177)
T PF13870_consen 47 LKIENQQLNEKIEERNKELLKLK 69 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 212
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.32 E-value=5.6e+02 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 8 RRLLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
++..++++....+.+++.+...+++|
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 213
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=21.28 E-value=5.4e+02 Score=22.23 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH----HHHHHhhhhhhchHHHHHHHHHHHHH
Q 023729 13 EKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ----ESNRLLAGEKGYGHLQKLQKMLRMRQ 81 (278)
Q Consensus 13 ~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~----e~~~~L~~e~~~~rL~~l~~~l~~rr 81 (278)
+++...+..|..+|..-.++...-+..|..=+..+..-...+. +....|.++. +.+..++.++..-+
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~--g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN--GDIPQLQKQIENLN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc--CCHHHHHHHHHHHH
Confidence 3444455555555655555555555555555555555544443 3556666654 66777777776554
No 214
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.27 E-value=4.3e+02 Score=23.85 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023729 18 RSKVEKEDAKNQEERLSMEVRSLLVAGTALSV 49 (278)
Q Consensus 18 ~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~ 49 (278)
.+++|+.+|....+++..-+..+..++.+...
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ 64 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDD 64 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444443
No 215
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=21.00 E-value=6.9e+02 Score=23.35 Aligned_cols=17 Identities=0% Similarity=-0.087 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKV 21 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (278)
+++.++.+.....+.+.
T Consensus 88 l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 88 VAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 216
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.00 E-value=4.8e+02 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=4.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEK 23 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~ 23 (278)
.|++....-++.....++.+.
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~ 57 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEIN 57 (141)
T ss_dssp ---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334433333333333333333
No 217
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=20.98 E-value=6.6e+02 Score=23.09 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 023729 49 VARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVK 95 (278)
Q Consensus 49 ~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~IypI~ 95 (278)
+|-+.+.+....|+.. .-..+++.|-+.|.+.|.=+..+-|+-
T Consensus 158 sa~~dvn~k~~~lEe~----ek~alR~aLiEER~Rfc~Fvs~l~pVl 200 (231)
T cd07643 158 SAMQDVNDKYLLLEET----EKKAVRNALIEERGRFCTFVSFLKPVL 200 (231)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4444444444444431 112455667777777887777777764
No 218
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.83 E-value=4.4e+02 Score=23.81 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 13 EKMSMRSKVEKEDAKNQEERLSMEVR 38 (278)
Q Consensus 13 ~~~~~~~~~l~~~i~~~re~l~~~~~ 38 (278)
++|+..+..+..++++.|+++..-+.
T Consensus 35 e~LK~~i~~~E~~l~~~r~~~~~aK~ 60 (207)
T PF05546_consen 35 EKLKKSIEELEDELEAARQEVREAKA 60 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 219
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=20.83 E-value=2.5e+02 Score=28.07 Aligned_cols=31 Identities=3% Similarity=0.066 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLV 42 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~ 42 (278)
.-++..+.+..+++.++++++-.+++.++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~ 352 (429)
T PRK00247 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQ 352 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444444433
No 220
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=20.35 E-value=2.9e+02 Score=18.82 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023729 13 EKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTAL 47 (278)
Q Consensus 13 ~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l 47 (278)
.+|..+...+.+-+.+-|+.+++++....--+.++
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI 38 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKETRFLRNTI 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777775555444443
No 221
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.22 E-value=1e+03 Score=27.23 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ 55 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~ 55 (278)
+++-.+..++.+......+...++..+..|......+.+....+..-...|.
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~ 552 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELP 552 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444445555444455555555555555544444444444444333333
No 222
>PF11652 DUF3259: Protein of unknown function (DUF3259); InterPro: IPR024280 This entry describes a eukaryotic protein family of unknown function designated FAM167.
Probab=20.17 E-value=4.2e+02 Score=20.51 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q 023729 14 KMSMRSKVEKEDAKNQE-ERLSMEV 37 (278)
Q Consensus 14 ~~~~~~~~l~~~i~~~r-e~l~~~~ 37 (278)
++..|.=+++.+|.+.| |+.|.+-
T Consensus 7 qLArqLmrlR~~i~~lkveq~C~~H 31 (84)
T PF11652_consen 7 QLARQLMRLRSEIHRLKVEQTCHEH 31 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666655 5555554
No 223
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=20.16 E-value=1e+03 Score=25.67 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023729 18 RSKVEKEDAKNQEERL 33 (278)
Q Consensus 18 ~~~~l~~~i~~~re~l 33 (278)
.++++..+++..++..
T Consensus 524 ~I~k~~ae~~rq~~~~ 539 (961)
T KOG4673|consen 524 TIEKHQAELTRQKDYY 539 (961)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444444444444433
No 224
>PF03082 MAGSP: Male accessory gland secretory protein; InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered [].; GO: 0007618 mating, 0005576 extracellular region
Probab=20.10 E-value=5.5e+02 Score=23.53 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh
Q 023729 18 RSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK 65 (278)
Q Consensus 18 ~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~ 65 (278)
..=.|-.||+.+|.+|-.-+..=..-.=.|..|.+++-|.+-+|+..+
T Consensus 146 ~SV~LM~Eie~rK~eIl~~Rq~NldLE~eLndanRkilElNlqlqdaR 193 (264)
T PF03082_consen 146 ISVALMKEIEARKTEILKARQSNLDLELELNDANRKILELNLQLQDAR 193 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCceeeehhHHHHHHHHHHHHHHHhh
Confidence 334455777777766655543333333455677777777776655544
Done!