Query 023729
Match_columns 278
No_of_seqs 161 out of 244
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 98.9 5.6E-09 1.9E-13 91.8 9.6 97 128-249 42-143 (210)
2 3vp7_A Vacuolar protein sortin 98.7 4E-08 1.4E-12 86.9 7.8 109 128-248 16-134 (220)
3 3u1c_A Tropomyosin alpha-1 cha 83.0 13 0.00046 28.2 12.1 61 4-64 17-77 (101)
4 3u59_A Tropomyosin beta chain; 78.5 19 0.00066 27.2 11.6 61 4-64 17-77 (101)
5 3na7_A HP0958; flagellar bioge 78.4 33 0.0011 29.9 12.4 13 72-84 129-141 (256)
6 3i00_A HIP-I, huntingtin-inter 69.7 8.5 0.00029 30.5 5.6 19 12-30 17-35 (120)
7 3vkg_A Dynein heavy chain, cyt 69.5 42 0.0014 39.9 13.3 86 2-87 2013-2106(3245)
8 1c1g_A Tropomyosin; contractIl 68.6 48 0.0016 27.2 13.1 31 3-33 6-36 (284)
9 1ic2_A Tropomyosin alpha chain 64.3 38 0.0013 24.5 9.4 58 6-63 16-73 (81)
10 1a93_B MAX protein, coiled coi 63.7 10 0.00036 23.5 3.9 27 1-27 5-31 (34)
11 2v4h_A NF-kappa-B essential mo 62.2 54 0.0018 25.5 10.8 31 3-33 31-61 (110)
12 1c1g_A Tropomyosin; contractIl 58.3 75 0.0026 26.0 13.1 23 5-27 15-37 (284)
13 3tnu_A Keratin, type I cytoske 55.4 72 0.0025 25.0 8.8 19 70-88 86-104 (131)
14 2d4y_A HAP1, flagellar HOOK-as 55.1 95 0.0033 29.3 11.1 80 15-98 76-155 (463)
15 3vkg_A Dynein heavy chain, cyt 54.1 1E+02 0.0034 36.9 12.8 13 215-227 2182-2194(3245)
16 3tnu_B Keratin, type II cytosk 53.3 78 0.0027 24.7 9.6 21 69-89 83-103 (129)
17 3na7_A HP0958; flagellar bioge 51.0 1.2E+02 0.0042 26.2 12.1 17 76-92 161-181 (256)
18 3hnw_A Uncharacterized protein 49.0 1E+02 0.0034 24.7 9.4 40 17-56 75-114 (138)
19 3cvf_A Homer-3, homer protein 48.5 77 0.0026 23.2 7.2 29 3-31 13-41 (79)
20 3ghg_A Fibrinogen alpha chain; 47.6 1.3E+02 0.0043 29.7 10.5 55 2-56 95-149 (562)
21 2f1m_A Acriflavine resistance 46.0 1.3E+02 0.0045 25.6 9.8 6 128-133 160-165 (277)
22 3cve_A Homer protein homolog 1 46.0 81 0.0028 22.7 7.2 28 3-30 7-34 (72)
23 3ol1_A Vimentin; structural ge 45.7 1E+02 0.0035 23.8 13.1 54 3-56 27-80 (119)
24 4dk0_A Putative MACA; alpha-ha 41.9 61 0.0021 28.9 7.1 12 47-58 117-128 (369)
25 1kd8_B GABH BLL, GCN4 acid bas 41.2 64 0.0022 20.1 5.3 31 4-34 2-32 (36)
26 3m91_A Proteasome-associated A 40.4 61 0.0021 21.7 5.1 26 9-34 15-40 (51)
27 3cve_A Homer protein homolog 1 40.0 1E+02 0.0035 22.1 9.7 23 12-34 9-31 (72)
28 2oxj_A Hybrid alpha/beta pepti 40.0 54 0.0018 20.2 4.3 27 5-31 3-29 (34)
29 1i84_S Smooth muscle myosin he 37.7 1.4E+02 0.0049 31.7 10.2 6 12-17 866-871 (1184)
30 3ghg_A Fibrinogen alpha chain; 37.6 1.2E+02 0.004 29.9 8.5 8 160-167 232-239 (562)
31 4h22_A Leucine-rich repeat fli 37.5 1.1E+02 0.0037 23.5 6.7 35 15-49 28-62 (103)
32 3fpp_A Macrolide-specific effl 36.1 78 0.0027 27.9 6.8 27 5-31 71-97 (341)
33 1gl2_C VTI1B, vesicle transpor 36.1 1.1E+02 0.0036 21.2 7.8 27 32-58 31-57 (65)
34 2jee_A YIIU; FTSZ, septum, coi 35.6 1.3E+02 0.0044 22.1 10.3 25 6-30 9-33 (81)
35 4emc_A Monopolin complex subun 35.0 1.5E+02 0.005 25.2 7.8 36 2-37 12-47 (190)
36 1jcd_A Major outer membrane li 34.2 1.1E+02 0.0036 20.6 7.3 29 6-34 7-35 (52)
37 2b5u_A Colicin E3; high resolu 33.9 2.1E+02 0.0071 28.0 9.5 43 17-59 328-370 (551)
38 3tnu_A Keratin, type I cytoske 33.8 1.7E+02 0.0057 22.8 11.6 31 2-32 44-74 (131)
39 2xdj_A Uncharacterized protein 33.5 1.4E+02 0.0048 21.8 7.8 34 12-45 22-58 (83)
40 3a7p_A Autophagy protein 16; c 33.3 2E+02 0.0068 23.5 9.7 45 7-51 65-109 (152)
41 3a7p_A Autophagy protein 16; c 33.3 2E+02 0.0068 23.5 11.8 44 15-58 66-109 (152)
42 3m91_A Proteasome-associated A 33.2 1.1E+02 0.0037 20.5 6.9 13 48-60 33-45 (51)
43 3fpp_A Macrolide-specific effl 32.3 2.4E+02 0.0082 24.6 9.5 21 12-32 71-91 (341)
44 2wg5_A General control protein 32.2 36 0.0012 26.1 3.4 27 10-36 7-33 (109)
45 3iv1_A Tumor susceptibility ge 32.0 1.5E+02 0.005 21.6 9.2 51 15-65 5-55 (78)
46 4fla_A Regulation of nuclear P 30.8 2.1E+02 0.0073 23.1 11.3 70 9-78 71-141 (152)
47 3qh9_A Liprin-beta-2; coiled-c 30.8 1.6E+02 0.0054 21.6 8.6 6 71-76 71-76 (81)
48 3c3f_A Alpha/beta peptide with 29.1 91 0.0031 19.1 4.0 26 5-30 3-28 (34)
49 3q0x_A Centriole protein; cent 28.4 1.7E+02 0.0059 25.4 7.4 43 9-51 170-212 (228)
50 1deq_A Fibrinogen (alpha chain 28.2 3.6E+02 0.012 25.3 9.9 55 4-58 100-154 (390)
51 2k48_A Nucleoprotein; viral pr 28.1 2.1E+02 0.007 22.1 10.3 17 70-86 84-100 (107)
52 2wt7_A Proto-oncogene protein 27.7 1.5E+02 0.005 20.2 7.8 13 12-24 25-37 (63)
53 3m48_A General control protein 27.6 85 0.0029 19.2 3.7 22 9-30 6-27 (33)
54 2efr_A General control protein 27.0 2.6E+02 0.0088 22.8 9.0 9 72-80 123-131 (155)
55 2nps_C Vesicle transport throu 26.8 1.8E+02 0.0061 20.9 9.3 18 3-20 5-22 (81)
56 3nmd_A CGMP dependent protein 26.2 1.8E+02 0.0062 20.8 7.2 23 19-41 21-43 (72)
57 1kd8_A GABH AIV, GCN4 acid bas 26.1 1.2E+02 0.004 18.9 4.2 27 6-32 4-30 (36)
58 4efa_G V-type proton ATPase su 25.2 2.4E+02 0.0082 21.9 9.2 30 68-97 83-113 (119)
59 3okq_A BUD site selection prot 24.9 2.7E+02 0.0094 22.4 7.9 55 12-66 23-82 (141)
60 3jsv_C NF-kappa-B essential mo 24.9 88 0.003 23.6 4.2 28 3-30 9-36 (94)
61 2hy6_A General control protein 24.1 1.1E+02 0.0038 18.8 3.8 22 33-54 6-27 (34)
62 4fi5_A Nucleoprotein; structur 23.1 2.7E+02 0.0091 21.7 9.6 21 69-89 70-90 (113)
63 3f1i_H Hepatocyte growth facto 23.0 2.5E+02 0.0085 21.3 8.1 40 15-54 46-88 (98)
64 2xdj_A Uncharacterized protein 22.3 1.9E+02 0.0064 21.1 5.6 7 31-37 30-36 (83)
65 3jsv_C NF-kappa-B essential mo 22.2 2.5E+02 0.0087 21.1 7.9 13 24-36 23-35 (94)
66 2v71_A Nuclear distribution pr 21.6 3.6E+02 0.012 22.7 13.0 33 4-36 50-82 (189)
67 1gl2_C VTI1B, vesicle transpor 21.6 2E+02 0.0069 19.7 8.7 29 24-52 30-58 (65)
68 3v86_A De novo design helix; c 21.2 1.2E+02 0.0043 17.2 3.7 21 8-28 5-25 (27)
69 3k29_A Putative uncharacterize 21.2 3.6E+02 0.012 22.4 8.4 16 41-56 95-110 (169)
70 3iv1_A Tumor susceptibility ge 20.6 2.5E+02 0.0085 20.4 10.7 37 20-56 31-67 (78)
71 3k29_A Putative uncharacterize 20.1 3.8E+02 0.013 22.3 9.3 32 20-51 88-119 (169)
72 1jcd_A Major outer membrane li 20.1 2E+02 0.007 19.2 7.4 28 10-37 4-31 (52)
73 3nr7_A DNA-binding protein H-N 20.1 2.6E+02 0.009 20.5 6.8 43 6-48 20-62 (86)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=98.89 E-value=5.6e-09 Score=91.80 Aligned_cols=97 Identities=23% Similarity=0.304 Sum_probs=78.9
Q ss_pred ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccccCCcceeecCCCCCCCCCCccc
Q 023729 128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS 206 (278)
Q Consensus 128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~L-pYpi~~~gSrSyI~d~~~~~~~~~~~~~ 206 (278)
.=||+|+.|.-.+. .+. +-++|+||+|++|.|+..||..+++.+ +|.++|.||.|+|.+...
T Consensus 42 fgtINglRLGrlp~------~~V-~W~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~---------- 104 (210)
T 4ddp_A 42 FGTINNFRLGRLPS------VPV-EWNEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD---------- 104 (210)
T ss_dssp EEEETTEECCCBTT------BCC-CHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred ceeEcccccCCCCC------CCC-CHHHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence 56899999987541 112 335799999999999999999999999 699999999999987632
Q ss_pred cccccCCCCCcccCcccCCCCh----hhHHHHHHHHHHHHHHHHHhc
Q 023729 207 NIALSTNTKPAEFPLFLEGQDA----TRAAYAVFLLNKDIEQLLNYI 249 (278)
Q Consensus 207 ~~~~~~~~~~~~fPLf~~~~d~----~~F~yav~LLnknI~qL~~~~ 249 (278)
....||||..+.-+ .+|+.|+.-+-.-+.|++...
T Consensus 105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~ 143 (210)
T 4ddp_A 105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV 143 (210)
T ss_dssp --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence 23479999876433 499999999999999998766
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=98.67 E-value=4e-08 Score=86.91 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=76.1
Q ss_pred ceEEeceecCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccccCCcceeecCC-CCCCCCCCcc
Q 023729 128 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYA-PSIEPTSDLS 205 (278)
Q Consensus 128 ~~tI~Gl~Lp~~~~~~~~~f~~~~~~~~isaaLgyvahlv~lls~yL~v~L-pYpi~~~gSrSyI~d~~-~~~~~~~~~~ 205 (278)
.=||+|+.|.-.+. ... +-.+|+||+|++|.|+..||..|++.+ .|.++|+||.|+|.+.. +..+- +..
T Consensus 16 fgTINglRLGrl~~------~~V-~W~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~--~~~ 86 (220)
T 3vp7_A 16 FATINGLRLGSIPE------SVV-PWKEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEY--NNS 86 (220)
T ss_dssp EEEETTEEECCBTT------BCC-CHHHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred ceeEcccccCCCCC------CCC-CHHHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeecccccccc--ccc
Confidence 56899999987541 112 235799999999999999999999999 59999999999999842 11000 000
Q ss_pred ccccccCCCCCcccCcccCCC--------ChhhHHHHHHHHHHHHHHHHHh
Q 023729 206 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKDIEQLLNY 248 (278)
Q Consensus 206 ~~~~~~~~~~~~~fPLf~~~~--------d~~~F~yav~LLnknI~qL~~~ 248 (278)
..........||||..+. -..+|+.|+--+-.-|.|+...
T Consensus 87 ---~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~ 134 (220)
T 3vp7_A 87 ---TTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ 134 (220)
T ss_dssp ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence 000011346799999864 1249999999999888888873
No 3
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.02 E-value=13 Score=28.20 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhh
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGE 64 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e 64 (278)
..+...+|.+++....+.+.+...+..+++..-.+.+..-..+|..+..+|.+++..|...
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554444444544444444445567778888888888777653
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.52 E-value=19 Score=27.17 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhh
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGE 64 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e 64 (278)
..+...+|.+++....+.+.+...+..+++.+-.+.+..-...+..+..++.+++..|...
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554444444444444444444556667777777777666653
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.42 E-value=33 Score=29.95 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 023729 72 KLQKMLRMRQQFM 84 (278)
Q Consensus 72 ~l~~~l~~rr~~l 84 (278)
.++..+...+..+
T Consensus 129 ~~~~~l~~~~~~l 141 (256)
T 3na7_A 129 DLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 6
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.68 E-value=8.5 Score=30.50 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQE 30 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~r 30 (278)
|+.|...++.|+.+++.-+
T Consensus 17 Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.50 E-value=42 Score=39.93 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh-chHHHHH
Q 023729 2 RERLEARRLLMEKMSMR-------SKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-YGHLQKL 73 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-------~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~-~~rL~~l 73 (278)
|+++++.+..+++...+ .+.+.+.+++.+++....++.-..-...++.++.+|+.|+.++.+-.+ ..|=...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 44444444444444444 444444444444444444333333345566777788888876444332 3443333
Q ss_pred HHHHHHHHHHHHHH
Q 023729 74 QKMLRMRQQFMISQ 87 (278)
Q Consensus 74 ~~~l~~rr~~lv~e 87 (278)
...+......|+.+
T Consensus 2093 ~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2093 SENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHH
Confidence 34444444444444
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=68.63 E-value=48 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
.++...+..++.+....+.+..++...+.++
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555444444444444333
No 9
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.30 E-value=38 Score=24.46 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhh
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG 63 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~ 63 (278)
+....+.+++....+.......+..+++..-.+.+..-..+|..+..+|.++...|..
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333444443344444445555566666665555544
No 10
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=63.70 E-value=10 Score=23.51 Aligned_cols=27 Identities=7% Similarity=0.291 Sum_probs=22.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 1 MRERLEARRLLMEKMSMRSKVEKEDAK 27 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~ 27 (278)
||++..+.+.-+++++.|-..|.++|.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 788899999888888888888887764
No 11
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.19 E-value=54 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERL 33 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l 33 (278)
.+|.....-+......|+++++++.+.++.+
T Consensus 31 ~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 31 QQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777777777776665533
No 12
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=58.27 E-value=75 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAK 27 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~ 27 (278)
++.....++++......+..++.
T Consensus 15 ~~~~~~~~~~l~~~l~~l~~~~~ 37 (284)
T 1c1g_A 15 KENALDRADEAEADKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 13
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.41 E-value=72 Score=24.99 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023729 70 LQKLQKMLRMRQQFMISQV 88 (278)
Q Consensus 70 L~~l~~~l~~rr~~lv~el 88 (278)
+..+...|...|..|-.++
T Consensus 86 i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 14
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=55.14 E-value=95 Score=29.25 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPV 94 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~~~rL~~l~~~l~~rr~~lv~el~~IypI 94 (278)
+-.+...+...+...|+++..++..-...- ..--.+|.+.+..+...... --..-...|.-+|-.|+.||+.+-+|
T Consensus 76 La~~~n~~~~~L~~~~~~~n~~i~~~V~~i---N~l~~qIa~LN~qI~~~~~~-~~g~~~ndLlDqRD~ll~eLS~~v~v 151 (463)
T 2d4y_A 76 LVNQFKTTDQYLRDQDKQVNIAIGSSVAQI---NNYAKQIANLNDQISRMTGV-GAGASPNDLLDQRDQLVSELNKIVGV 151 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcc-CCCCCchHhHHHHHHHHHHHHhhcCe
Confidence 333444444555555555555554433222 22233455555444322110 00123357889999999999999999
Q ss_pred cccC
Q 023729 95 KILV 98 (278)
Q Consensus 95 ~~~~ 98 (278)
+...
T Consensus 152 ~v~~ 155 (463)
T 2d4y_A 152 EVSV 155 (463)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9764
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.10 E-value=1e+02 Score=36.87 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=10.1
Q ss_pred CCcccCcccCCCC
Q 023729 215 KPAEFPLFLEGQD 227 (278)
Q Consensus 215 ~~~~fPLf~~~~d 227 (278)
..+.|||.+|.+.
T Consensus 2182 ~~~R~PLlIDPq~ 2194 (3245)
T 3vkg_A 2182 RFNRYPLVIDPSG 2194 (3245)
T ss_dssp SCSSCEEEECTTS
T ss_pred cCCCceEEEChHH
Confidence 4578999999764
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.34 E-value=78 Score=24.67 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023729 69 HLQKLQKMLRMRQQFMISQVS 89 (278)
Q Consensus 69 rL~~l~~~l~~rr~~lv~el~ 89 (278)
.+..+...|...|..|-.++.
T Consensus 83 ~i~~lE~eL~~~r~e~~~ql~ 103 (129)
T 3tnu_B 83 KLAELEEALQKAKQDMARLLR 103 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 344555666666666655543
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.99 E-value=1.2e+02 Score=26.19 Aligned_cols=17 Identities=6% Similarity=0.352 Sum_probs=8.3
Q ss_pred HHHHHHHHHHH----HHHhhc
Q 023729 76 MLRMRQQFMIS----QVSFLY 92 (278)
Q Consensus 76 ~l~~rr~~lv~----el~~Iy 92 (278)
.+...|..+.. .|-..|
T Consensus 161 ~l~~~r~~l~~~i~~~lL~~Y 181 (256)
T 3na7_A 161 IIFKKKEDLVEKTEPKIYSFY 181 (256)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHH
Confidence 34455555554 344555
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.02 E-value=1e+02 Score=24.65 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 17 MRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 17 ~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
.+.+.+.+++++..+++..-+..|....-.+..+...+.+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443333
No 19
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=48.54 E-value=77 Score=23.17 Aligned_cols=29 Identities=0% Similarity=0.076 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEE 31 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re 31 (278)
+|+++...+=..+..++..+..++++.+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.56 E-value=1.3e+02 Score=29.66 Aligned_cols=55 Identities=5% Similarity=0.027 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
|+++.....--.....-.+.|++.|...|+++..++..+...++.|+....+||.
T Consensus 95 r~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 95 RGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp SSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433332333333555666666666666665555555666655555553
No 21
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=45.98 E-value=1.3e+02 Score=25.55 Aligned_cols=6 Identities=17% Similarity=-0.014 Sum_probs=2.9
Q ss_pred ceEEec
Q 023729 128 SLTILG 133 (278)
Q Consensus 128 ~~tI~G 133 (278)
.++|..
T Consensus 160 l~~i~~ 165 (277)
T 2f1m_A 160 LATVQQ 165 (277)
T ss_dssp SEEEEE
T ss_pred eEEEec
Confidence 455543
No 22
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=45.97 E-value=81 Score=22.67 Aligned_cols=28 Identities=4% Similarity=0.066 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQE 30 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~r 30 (278)
+|+++...+=..+..+...+..++++.+
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444444
No 23
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=45.68 E-value=1e+02 Score=23.81 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
+.|.....--.++..+++.++.++++-|.+...++..-....+++...+..+.+
T Consensus 27 ~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~ 80 (119)
T 3ol1_A 27 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 80 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccH
Confidence 334444444444555555556656555544444432222223344444444433
No 24
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.90 E-value=61 Score=28.94 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=4.6
Q ss_pred HHHHHHhHHHHH
Q 023729 47 LSVARKRLQESN 58 (278)
Q Consensus 47 l~~a~~~l~e~~ 58 (278)
+..++..+..++
T Consensus 117 ~~~a~~~~~~a~ 128 (369)
T 4dk0_A 117 LNTAKATLNNAK 128 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=41.15 E-value=64 Score=20.11 Aligned_cols=31 Identities=6% Similarity=0.100 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLS 34 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~ 34 (278)
|+.+-.+.++++...-..|..+|.+.|+-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4445555666666666666665555554443
No 26
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.43 E-value=61 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERLS 34 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l~ 34 (278)
+..+..+..+=.+|.+..++.|++|.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 27
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.02 E-value=1e+02 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLS 34 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~ 34 (278)
+.++...-..|.+.|...+.+|.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 28
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.97 E-value=54 Score=20.20 Aligned_cols=27 Identities=0% Similarity=0.037 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEE 31 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re 31 (278)
...-.++++++...-..|..+|.+.|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344445555555555555555544443
No 29
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=37.67 E-value=1.4e+02 Score=31.69 Aligned_cols=6 Identities=0% Similarity=0.263 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023729 12 MEKMSM 17 (278)
Q Consensus 12 ~~~~~~ 17 (278)
++++..
T Consensus 866 L~el~~ 871 (1184)
T 1i84_S 866 LQRTKE 871 (1184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 30
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.58 E-value=1.2e+02 Score=29.91 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 023729 160 LGYIAHVV 167 (278)
Q Consensus 160 Lgyvahlv 167 (278)
|.-+-|+-
T Consensus 232 l~ei~Qm~ 239 (562)
T 3ghg_A 232 LTDMPQMR 239 (562)
T ss_dssp --------
T ss_pred hhhhhcEE
Confidence 54444443
No 31
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.51 E-value=1.1e+02 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSV 49 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~ 49 (278)
+.-+++.|+..+++..|.+..-.+.+....++++.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~ 62 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFER 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665555555544443
No 32
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=36.13 E-value=78 Score=27.91 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQEE 31 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~re 31 (278)
+++.++.+.++..+.+.++.+.+..+.
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~~~~a~~ 97 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAELKLARV 97 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 33
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=36.07 E-value=1.1e+02 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 023729 32 RLSMEVRSLLVAGTALSVARKRLQESN 58 (278)
Q Consensus 32 ~l~~~~~~l~~~~~~l~~a~~~l~e~~ 58 (278)
+|..+++.|...+..+..+...+..++
T Consensus 31 ~L~~QREql~~t~~~l~~~d~~l~~s~ 57 (65)
T 1gl2_C 31 ELGEQRDQLERTKSRLVNTNENLSKSR 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHhHHHhHHHhHHhHHHHHH
Confidence 444444444444444444444444433
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.64 E-value=1.3e+02 Score=22.08 Aligned_cols=25 Identities=4% Similarity=-0.029 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQE 30 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~r 30 (278)
+.-.+++.++...+..|.-+|+..|
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444333
No 35
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.02 E-value=1.5e+02 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
.++++.....+..+..+...|.++++.+..++.+-+
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~ 47 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQ 47 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666665555555444
No 36
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.17 E-value=1.1e+02 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLS 34 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~ 34 (278)
+.-..-+.+|..+.+.|..+|...|-++.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555554444333
No 37
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.89 E-value=2.1e+02 Score=27.99 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Q 023729 17 MRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNR 59 (278)
Q Consensus 17 ~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~ 59 (278)
+.+....+.+...+|++..-...+-.++++|.+|...|.++..
T Consensus 328 ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 328 AELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHH
Confidence 3333333333333343333333444556666666666665443
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.75 E-value=1.7e+02 Score=22.79 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 2 RERLEARRLLMEKMSMRSKVEKEDAKNQEER 32 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~re~ 32 (278)
|+.|+..+..++.++.+...|...+.+.+.+
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 39
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=33.46 E-value=1.4e+02 Score=21.81 Aligned_cols=34 Identities=3% Similarity=0.128 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q 023729 12 MEKMSMRSKVEKEDAKNQE---ERLSMEVRSLLVAGT 45 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~r---e~l~~~~~~l~~~~~ 45 (278)
..++..+++.++.||...| |++..++..+..+-+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455556666666666555 444444444444433
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.32 E-value=2e+02 Score=23.54 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023729 7 ARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVAR 51 (278)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~ 51 (278)
.....+..+...+..++..|++..++|..+...+..-...+.+-+
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777766655444444444333
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.29 E-value=2e+02 Score=23.53 Aligned_cols=44 Identities=7% Similarity=0.069 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESN 58 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~ 58 (278)
....+..|+.+....++++......+..+...++.-+..+...+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666655555444444333
No 42
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.23 E-value=1.1e+02 Score=20.46 Aligned_cols=13 Identities=23% Similarity=0.169 Sum_probs=5.7
Q ss_pred HHHHHhHHHHHHH
Q 023729 48 SVARKRLQESNRL 60 (278)
Q Consensus 48 ~~a~~~l~e~~~~ 60 (278)
..|+.+|...++.
T Consensus 33 ~~AR~el~~Lkee 45 (51)
T 3m91_A 33 KEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 43
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.28 E-value=2.4e+02 Score=24.61 Aligned_cols=21 Identities=5% Similarity=0.107 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKEDAKNQEER 32 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~ 32 (278)
+.++..+.+.++.+++..+.+
T Consensus 71 ~~~~~a~l~~~~a~l~~a~~~ 91 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQAEAE 91 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444433333
No 44
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.22 E-value=36 Score=26.08 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSME 36 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~ 36 (278)
-|+.++..+.+.+++++++.|+++..-
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L 33 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARL 33 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777776666665543
No 45
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.00 E-value=1.5e+02 Score=21.62 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhh
Q 023729 15 MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEK 65 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~ 65 (278)
+.+.-++|+..++..=++-++++.+|.+....|..-+++|++.-..|..++
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~ 55 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEV 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455667788877777788888888888888888888888888776666655
No 46
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=30.81 E-value=2.1e+02 Score=23.11 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHhhhhhh-chHHHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKG-YGHLQKLQKMLR 78 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~~~L~~e~~-~~rL~~l~~~l~ 78 (278)
.....++...+..|.+=++....++..++.-+..-......-+..+.+++..+...++ -.++..++..|.
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~ 141 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELK 141 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666555555666555543333333333444455666666655443 233434444433
No 47
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=30.77 E-value=1.6e+02 Score=21.62 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.2
Q ss_pred HHHHHH
Q 023729 71 QKLQKM 76 (278)
Q Consensus 71 ~~l~~~ 76 (278)
+.++.+
T Consensus 71 ~rL~~~ 76 (81)
T 3qh9_A 71 ERLHSQ 76 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=29.09 E-value=91 Score=19.15 Aligned_cols=26 Identities=4% Similarity=0.003 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 5 LEARRLLMEKMSMRSKVEKEDAKNQE 30 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~i~~~r 30 (278)
...-.+.++++...-..|..+|.+.|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33344444444444444444444443
No 49
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=28.38 E-value=1.7e+02 Score=25.40 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVAR 51 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~ 51 (278)
..|...++.....+.+.+++.+++..+....|.+-+.+++.++
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777766665555554443
No 50
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.21 E-value=3.6e+02 Score=25.29 Aligned_cols=55 Identities=2% Similarity=-0.051 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESN 58 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e~~ 58 (278)
++....+--..+..-.+.|++.|.-.++.+..++..|...+..|+....+++..+
T Consensus 100 ~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 100 DFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444555666666666666666666666666666666655544
No 51
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.08 E-value=2.1e+02 Score=22.05 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023729 70 LQKLQKMLRMRQQFMIS 86 (278)
Q Consensus 70 L~~l~~~l~~rr~~lv~ 86 (278)
...++.+|+.-++.|..
T Consensus 84 Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 84 VSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33555555555544433
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.75 E-value=1.5e+02 Score=20.23 Aligned_cols=13 Identities=0% Similarity=0.169 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 023729 12 MEKMSMRSKVEKE 24 (278)
Q Consensus 12 ~~~~~~~~~~l~~ 24 (278)
+++|....+.|..
T Consensus 25 ~~~Le~~v~~L~~ 37 (63)
T 2wt7_A 25 TDTLQAETDQLED 37 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 53
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.59 E-value=85 Score=19.20 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023729 9 RLLMEKMSMRSKVEKEDAKNQE 30 (278)
Q Consensus 9 ~~~~~~~~~~~~~l~~~i~~~r 30 (278)
.++++++...-..|..+|.+.|
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555554444544444443
No 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.02 E-value=2.6e+02 Score=22.82 Aligned_cols=9 Identities=0% Similarity=0.154 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 023729 72 KLQKMLRMR 80 (278)
Q Consensus 72 ~l~~~l~~r 80 (278)
.++..|...
T Consensus 123 ~i~~eLd~t 131 (155)
T 2efr_A 123 AISEEMKQL 131 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 55
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=26.77 E-value=1.8e+02 Score=20.89 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSK 20 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (278)
+++-....++++-...++
T Consensus 5 ~~Ll~~t~~L~rt~~~L~ 22 (81)
T 2nps_C 5 AHLLDNTERLERSSRRLE 22 (81)
T ss_dssp THHHHHHHHHHHHHTHHH
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 344444444444433333
No 56
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.24 E-value=1.8e+02 Score=20.82 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023729 19 SKVEKEDAKNQEERLSMEVRSLL 41 (278)
Q Consensus 19 ~~~l~~~i~~~re~l~~~~~~l~ 41 (278)
...|+..++++.|+|+.+-..+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~ 43 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALID 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666654433
No 57
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.08 E-value=1.2e+02 Score=18.90 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEER 32 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~ 32 (278)
.+-.+.+++|...-..|..+|.+.|+-
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334445555555555555555444443
No 58
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=25.19 E-value=2.4e+02 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHhhcccccc
Q 023729 68 GHLQKLQKMLRMRQQFMISQ-VSFLYPVKIL 97 (278)
Q Consensus 68 ~rL~~l~~~l~~rr~~lv~e-l~~IypI~~~ 97 (278)
..+..++......+...|.. |..++.|+|.
T Consensus 83 ~ki~~i~~~~~~~k~~Vv~~Ll~~V~dvkpe 113 (119)
T 4efa_G 83 GELAEIKKIAEKKKDDVVKILIETVIKPSAE 113 (119)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCCC
Confidence 44667777777777666665 5577777763
No 59
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=24.90 E-value=2.7e+02 Score=22.42 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhHHHHHHHhhhhhh
Q 023729 12 MEKMSMRSKVEKEDAKNQEERLSMEV-----RSLLVAGTALSVARKRLQESNRLLAGEKG 66 (278)
Q Consensus 12 ~~~~~~~~~~l~~~i~~~re~l~~~~-----~~l~~~~~~l~~a~~~l~e~~~~L~~e~~ 66 (278)
.+.+....+.|..=|++.|.....+. +.|..-.+++..|...|+..++.+..++-
T Consensus 23 sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP 82 (141)
T 3okq_A 23 SDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKP 82 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 34445555555555555555555442 55556667788888888887777777664
No 60
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=24.87 E-value=88 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 3 ERLEARRLLMEKMSMRSKVEKEDAKNQE 30 (278)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~l~~~i~~~r 30 (278)
.++.....-+......+++|++.+...+
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444455555556666666666555
No 61
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.14 E-value=1.1e+02 Score=18.75 Aligned_cols=22 Identities=36% Similarity=0.298 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHhH
Q 023729 33 LSMEVRSLLVAGTALSVARKRL 54 (278)
Q Consensus 33 l~~~~~~l~~~~~~l~~a~~~l 54 (278)
|..+.+.|..+.++|+..=.+|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444444444333333
No 62
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.14 E-value=2.7e+02 Score=21.65 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023729 69 HLQKLQKMLRMRQQFMISQVS 89 (278)
Q Consensus 69 rL~~l~~~l~~rr~~lv~el~ 89 (278)
....++.+|+.-++.|...++
T Consensus 70 ~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 70 VAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777766666655
No 63
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=22.96 E-value=2.5e+02 Score=21.26 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhH
Q 023729 15 MSMRSKVEKEDAKNQE---ERLSMEVRSLLVAGTALSVARKRL 54 (278)
Q Consensus 15 ~~~~~~~l~~~i~~~r---e~l~~~~~~l~~~~~~l~~a~~~l 54 (278)
+..+.=+..++.+++| |.|+.+...+.+++.+|.+.+..-
T Consensus 46 MH~~Ll~~i~~~ee~R~~yE~LQDkL~qi~eAR~ALdaLR~eH 88 (98)
T 3f1i_H 46 MHPQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEH 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555 667666666666666665554433
No 64
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.31 E-value=1.9e+02 Score=21.10 Aligned_cols=7 Identities=0% Similarity=0.074 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023729 31 ERLSMEV 37 (278)
Q Consensus 31 e~l~~~~ 37 (278)
++|+.++
T Consensus 30 ~~Lq~Ev 36 (83)
T 2xdj_A 30 SDNQSDI 36 (83)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.15 E-value=2.5e+02 Score=21.07 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 023729 24 EDAKNQEERLSME 36 (278)
Q Consensus 24 ~~i~~~re~l~~~ 36 (278)
.+|++.++++...
T Consensus 23 ~~id~lke~~~q~ 35 (94)
T 3jsv_C 23 ELIDKLKEEAEQH 35 (94)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.62 E-value=3.6e+02 Score=22.66 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 4 RLEARRLLMEKMSMRSKVEKEDAKNQEERLSME 36 (278)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~ 36 (278)
.|++...+..++..+..+|..+++..|+.+...
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666554444
No 67
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=21.57 E-value=2e+02 Score=19.66 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023729 24 EDAKNQEERLSMEVRSLLVAGTALSVARK 52 (278)
Q Consensus 24 ~~i~~~re~l~~~~~~l~~~~~~l~~a~~ 52 (278)
.++..+||+|..-...|...-.++..+..
T Consensus 30 ~~L~~QREql~~t~~~l~~~d~~l~~s~k 58 (65)
T 1gl2_C 30 EELGEQRDQLERTKSRLVNTNENLSKSRK 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHhHHHhHHHhHHhHHHHHHH
Confidence 44444555555555444444444444443
No 68
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=21.23 E-value=1.2e+02 Score=17.15 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023729 8 RRLLMEKMSMRSKVEKEDAKN 28 (278)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~i~~ 28 (278)
-++-++++....+.|++++++
T Consensus 5 lkdevgelkgevralkdevkd 25 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhc
Confidence 345566666666666666654
No 69
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=21.16 E-value=3.6e+02 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=5.8
Q ss_pred HHhhhHHHHHHHhHHH
Q 023729 41 LVAGTALSVARKRLQE 56 (278)
Q Consensus 41 ~~~~~~l~~a~~~l~e 56 (278)
..+...++.++..|..
T Consensus 95 aeq~e~Ve~e~q~Le~ 110 (169)
T 3k29_A 95 NKQKENVLAASKELER 110 (169)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 70
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.58 E-value=2.5e+02 Score=20.37 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Q 023729 20 KVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 56 (278)
Q Consensus 20 ~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~~~l~e 56 (278)
++..++.++.+..|...+..|.+-...+...-.-+++
T Consensus 31 rrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 31 KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555554444444444433333333
No 71
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.14 E-value=3.8e+02 Score=22.25 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023729 20 KVEKEDAKNQEERLSMEVRSLLVAGTALSVAR 51 (278)
Q Consensus 20 ~~l~~~i~~~re~l~~~~~~l~~~~~~l~~a~ 51 (278)
..+.+.|.+.++++...++.|..+..++..|+
T Consensus 88 a~lEqkVaeq~e~Ve~e~q~Le~ar~el~qAr 119 (169)
T 3k29_A 88 SEEEEKVNKQKENVLAASKELERAEVELTKRR 119 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 72
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.11 E-value=2e+02 Score=19.17 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023729 10 LLMEKMSMRSKVEKEDAKNQEERLSMEV 37 (278)
Q Consensus 10 ~~~~~~~~~~~~l~~~i~~~re~l~~~~ 37 (278)
..+++|..+...|..+|.....++..-+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~ 31 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAAR 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666555444433
No 73
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.08 E-value=2.6e+02 Score=20.45 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023729 6 EARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALS 48 (278)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~i~~~re~l~~~~~~l~~~~~~l~ 48 (278)
..+..=++++..-.+++..=|+.+|++-.........+...++
T Consensus 20 ~arel~le~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~ 62 (86)
T 3nr7_A 20 QARESTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQ 62 (86)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444446777777788888888888777766644444433333
Done!