BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023730
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P0S3|TM45B_DANRE Transmembrane protein 45B OS=Danio rerio GN=tmem45b PE=2 SV=1
Length = 283
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 9/214 (4%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRV--RVWNPVPGFDGKLKYMELYV 58
M +F GH LPGT FLL G+W R + K +V R + ++ +E +
Sbjct: 1 MANFKGHALPGTFFLLFGLWWSIKCPFRQILRRKERQVGDRERQKLTALFNRIDLIEGSL 60
Query: 59 IVIGAFIDMCIELFYST--HLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVTLLSEKTR 116
+ AF+ + E F H + +G + + +++HS M L + I G+ +LS +
Sbjct: 61 KIFFAFVGIMAEQFVPDGPHAHLYQDGWVK---LMNWQHSTMYLFYGISGIADVLSVSSH 117
Query: 117 FLPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIFP 176
+P+ + L F++ F E LF FH + L+ + H LL+F + S
Sbjct: 118 HVPVGLDRL-FLSLALFV-EGFLFYFHIHNREPLDQHIHSLLLFAVFGGSASTMMEVFKR 175
Query: 177 TSFPIDLSSGIAITLQGLWFYQTAFTLYGPMMPD 210
+ ++L LQG WFYQ F LY P+
Sbjct: 176 ENAVLELLRCTLAILQGTWFYQIGFVLYPLSGPE 209
>sp|Q3T130|TM45B_BOVIN Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1
Length = 276
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 99/210 (47%), Gaps = 15/210 (7%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNPKSF--RVRVWNPVPGFDGKLKYMELYV 58
M +F GH LPG+ FL+VG+W WS + P + + N + +L+ +E +
Sbjct: 1 MANFKGHALPGSFFLIVGLW--WS-----LKYPLKYFYQKEKSNQLTHHYQRLEIIEAAI 53
Query: 59 IVIGAFIDMCIELFYST--HLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVTLLSEKTR 116
+ A I + +E F HL + + + +++HS M L F + G++ +L+
Sbjct: 54 RTLFAVIGILVEQFVPDGPHLHLYHED--HWVKLMNWQHSTMYLFFAVSGIMDMLTYLIT 111
Query: 117 FLPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIFP 176
+PL + L + A A E LF +H L+ + H LL++ + LS A +
Sbjct: 112 HVPLGLDRL--VMALAAFNEGFLFYYHVRDRPPLDQHIHSLLLYTVFGGALSLAVEVVLR 169
Query: 177 TSFPIDLSSGIAITLQGLWFYQTAFTLYGP 206
+ ++L + LQG WF+Q F L+ P
Sbjct: 170 DNIVLELFRTSLLLLQGTWFWQIGFVLFPP 199
>sp|Q96B21|TM45B_HUMAN Transmembrane protein 45B OS=Homo sapiens GN=TMEM45B PE=1 SV=1
Length = 275
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 20/212 (9%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNP-KSFRVRVWNPVPGFDGKLKYMELYVI 59
M +F GH LPG+ FL++G+ WS V P K F N + +L+ +E +
Sbjct: 1 MANFKGHALPGSFFLIIGL--CWS-----VKYPLKYFSHTRKNSPLHYYQRLEIVEAAIR 53
Query: 60 VIGAFIDMCIELFYST--HLKFFVNGVLNPHH---MNDFEHSGMLLMFVIFGVVTLLSEK 114
+ + + E F HL + + +H + +++HS M L F + G+V +L+
Sbjct: 54 TLFSVTGILAEQFVPDGPHLHLY-----HENHWIKLMNWQHSTMYLFFAVSGIVDMLTYL 108
Query: 115 TRFLPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGI 174
+PL + L + A A E LF +H L+ + H LL++ + +S + I
Sbjct: 109 VSHVPLGVDRL--VMAVAVFMEGFLFYYHVHNRPPLDQHIHSLLLYALFGGCVSISLEVI 166
Query: 175 FPTSFPIDLSSGIAITLQGLWFYQTAFTLYGP 206
F ++L I LQG WF+Q F L+ P
Sbjct: 167 FRDHIVLELFRTSLIILQGTWFWQIGFVLFPP 198
>sp|Q9NWC5|TM45A_HUMAN Transmembrane protein 45A OS=Homo sapiens GN=TMEM45A PE=2 SV=1
Length = 275
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRVRVWNPVPGFDGKLKYMELYVIV 60
MG+F GH LPGT F ++G+W ++++++ + + + + +L+ +E IV
Sbjct: 1 MGNFRGHALPGTFFFIIGLWWCTKSILKYICKKQKRTCYLGSKTLFY--RLEILEGITIV 58
Query: 61 IGAFIDMCIELFY--STHLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVTLLSEKTRFL 118
A M E F HL + + + + + H M F + GV +L L
Sbjct: 59 GMALTGMAGEQFIPGGPHLMLYDYKQGHWNQLLGWHHFTMYFFFGLLGVADILCFTISSL 118
Query: 119 PLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIFPTS 178
P+ L + + A E +F H+ + L+ + H LLV ++ L L + +
Sbjct: 119 PVSLTKL--MLSNALFVEAFIFYNHTHGREMLDIFVHQLLVLVVFLTGLVAFLEFLVRNN 176
Query: 179 FPIDLSSGIAITLQGLWFYQTAFTLYGP 206
++L I LQG WF+Q F LY P
Sbjct: 177 VLLELLRSSLILLQGSWFFQIGFVLYPP 204
>sp|Q6NS09|TM45B_XENLA Transmembrane protein 45B OS=Xenopus laevis GN=tmem45b PE=2 SV=1
Length = 280
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRVRVWNPVPGFDGKLKYMELYVIV 60
M +F GH LPG+ FL+ G+W +R++++ R +D +L+ +E +
Sbjct: 1 MANFKGHALPGSFFLVFGLWWSVKYPLRYLNSKVKGNCR---SNKCYD-RLELIEGILKA 56
Query: 61 IGAFIDMCIELFYST--HLKFFVNGVLNPH-HMNDFEHSGMLLMFVIFGVVTLLSEKTRF 117
+ + I + E F H+ VNG + + +++H+ M L + I GVV +L+
Sbjct: 57 LFSLIGILAEQFVPDGPHMHL-VNGEDHSWVKLMNWQHTTMYLFYGISGVVDILTYFPLN 115
Query: 118 LPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIFPT 177
LP + L A E LLF +H L+ + H LL+ + C +S
Sbjct: 116 LPRGLDRLSL--GIAVIVEGLLFYYHVHNRPALDQHIHSLLLIAVFGCAISIMIEVFMRN 173
Query: 178 SFPIDLSSGIAITLQGLWFYQTAFTLY 204
++L LQG WF+Q F LY
Sbjct: 174 DIVLELFRASLSILQGTWFWQIGFVLY 200
>sp|Q497B2|TM45B_RAT Transmembrane protein 45B OS=Rattus norvegicus GN=Tmem45b PE=2 SV=1
Length = 278
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 19/213 (8%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVR----HVSNPKSFRVRVWNPVPGFDGKLKYMEL 56
M +F GH LPG+ FL+ G+W WS H K R+ + +++ +E
Sbjct: 1 MANFKGHALPGSFFLIFGLW--WSVKYPLKYFHQKGLKKNRLSLQQQ------RIEIIEG 52
Query: 57 YVIVIGAFIDMCIELFYST--HLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVTLLSEK 114
V + A I + E F HL + + +++HS M L F + G++ +L+
Sbjct: 53 AVKALFAVIGILAEQFVPDGPHLHLYHENQWTK--LMNWQHSTMYLFFGVSGIIDMLTYL 110
Query: 115 T-RFLPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGG 173
+PL + + + A A E LF FH L+ + H LL+F + +S
Sbjct: 111 YFNIVPLGLDRV--VLAMAVFVEGFLFYFHVHGRPPLDQHIHSLLLFSLFGATISICLEV 168
Query: 174 IFPTSFPIDLSSGIAITLQGLWFYQTAFTLYGP 206
I + ++L + LQG WF+Q F L+ P
Sbjct: 169 ILRDNIVLELFRTTLLILQGTWFWQIGFVLFPP 201
>sp|Q8VCZ2|TM45B_MOUSE Transmembrane protein 45B OS=Mus musculus GN=Tmem45b PE=1 SV=1
Length = 278
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 11/209 (5%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRVRVWNPVPGFDGKLKYMELYVIV 60
M +F GH LPG+ FL+VG+W WS V++ + N + +++ +E V
Sbjct: 1 MANFKGHALPGSFFLIVGLW--WS--VKYPLKYFHHKGLKNNRLSRQQERIEIIEGAVKT 56
Query: 61 IGAFIDMCIELFYST--HLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVTLLSEKT-RF 117
+ A I + E F HL + + +++HS M L F + G++ +++
Sbjct: 57 LFAIIGILAEQFVPDGPHLHLYHENQWVK--LMNWQHSTMYLFFGVSGLMDMITYLYFHI 114
Query: 118 LPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIFPT 177
+PL + + + A A E LF FH L+ + H LL+F + +S + I
Sbjct: 115 VPLGLDRV--VLAMAVFIEGFLFYFHVHNRPPLDQHIHSLLLFGLFGAAVSISLEVILRD 172
Query: 178 SFPIDLSSGIAITLQGLWFYQTAFTLYGP 206
+ ++L + LQG WF+Q F L+ P
Sbjct: 173 NIVLELFRTSLLILQGTWFWQIGFVLFPP 201
>sp|Q60774|TM45A_MOUSE Transmembrane protein 45A OS=Mus musculus GN=Tmem45a PE=1 SV=1
Length = 273
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 26/217 (11%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVS---------NPKSF--RVRVWNPVPGFDG 49
MGSF GH LPG+ F +G W +++ V N K+ R +W V
Sbjct: 1 MGSFKGHALPGSFFFAMGFWWTMKNILKSVYKRQTRTCYLNSKTLLRRTEIWEGV----- 55
Query: 50 KLKYMELYVIVIGAFIDMCIELFYSTHLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVT 109
V+++ + + E F S ++ + + + H+ M L F + G+
Sbjct: 56 --------VVLLMSLTGIAGEQFISGGPALILHKDGQWNQILGWHHTTMYLFFGLQGITQ 107
Query: 110 LLSEKTRFLPLPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSC 169
++ T LPL L ++ F ++ +N H+ + ++ + H LLVF+ L
Sbjct: 108 IICFTTNVLPLSSSKL-MLSIAIFVETFMFYN-HTHGREMIDIFVHQLLVFVGTFSGLVA 165
Query: 170 AAGGIFPTSFPIDLSSGIAITLQGLWFYQTAFTLYGP 206
+ + ++L + QG WF+Q AF LY P
Sbjct: 166 FLEFLVKNNALLELLRCSLLMFQGTWFWQMAFVLYPP 202
>sp|Q5XGD7|TM45B_XENTR Transmembrane protein 45B OS=Xenopus tropicalis GN=tmem45b PE=2
SV=1
Length = 280
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 14/209 (6%)
Query: 1 MGSFIGHVLPGTLFLLVGVWHIWSAVVRHVSNPKSFRVRVWNPVPGFDGKLKYMELYVIV 60
M +F GH LPG+ FL+ G+W WS V++ + +V+ +L+ +E +
Sbjct: 1 MANFKGHALPGSFFLVFGLW--WS--VKYPLKYLNSKVKGNCRSNKCYERLELIEGILKA 56
Query: 61 IGAFIDMCIELFYST--HLKFFVNGVLNPH-HMNDFEHSGMLLMFVIFGVVTLLSEKTRF 117
A I + E F H+ VNG + + +++H+ M L + I GVV +L+ F
Sbjct: 57 AFALIGILAEQFVPDGPHMH-LVNGEDHSWVKLMNWQHTTMYLFYGISGVVDILT----F 111
Query: 118 LP--LPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIF 175
LP LP A E LLF +H L+ + H LL+ + +S
Sbjct: 112 LPLNLPRGLDRLSLGIAVIIEGLLFYYHVHNRPALDQHIHSLLLIAVFGGAISIMIEVFM 171
Query: 176 PTSFPIDLSSGIAITLQGLWFYQTAFTLY 204
++L LQG WF+Q F LY
Sbjct: 172 RNDIVLELFRSSLTILQGTWFWQIGFVLY 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.145 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,804,118
Number of Sequences: 539616
Number of extensions: 4303963
Number of successful extensions: 9767
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9732
Number of HSP's gapped (non-prelim): 26
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)