Query 023730
Match_columns 278
No_of_seqs 160 out of 290
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04819 DUF716: Family of unk 100.0 8.1E-46 1.7E-50 308.8 14.8 136 120-255 1-137 (137)
2 PF10355 Ytp1: Protein of unkn 97.3 0.0076 1.6E-07 55.8 14.4 170 3-194 25-224 (271)
3 PF01299 Lamp: Lysosome-associ 32.5 44 0.00096 31.2 3.2 34 218-255 261-294 (306)
4 PF11052 Tr-sialidase_C: Trans 20.7 94 0.002 18.6 1.9 21 2-22 2-22 (25)
5 PF15106 TMEM156: TMEM156 prot 16.0 1.4E+02 0.0031 27.0 2.9 35 236-270 174-209 (226)
6 PF09889 DUF2116: Uncharacteri 15.7 1.4E+02 0.0031 21.3 2.3 33 218-251 21-53 (59)
7 PF14985 TM140: TM140 protein 14.8 3.5E+02 0.0076 23.4 4.8 53 212-264 49-107 (181)
8 CHL00045 ccsA cytochrome c bio 14.5 1E+03 0.022 22.5 10.1 87 92-178 5-96 (319)
9 COG4459 NapE Periplasmic nitra 14.4 1.3E+02 0.0028 21.7 1.7 23 183-211 39-61 (62)
10 TIGR02840 spore_YtaF putative 14.0 6.9E+02 0.015 21.9 6.8 25 5-29 62-86 (206)
No 1
>PF04819 DUF716: Family of unknown function (DUF716) ; InterPro: IPR006904 These sequences are a family of uncharacterised hypothetical proteins restricted to eukaryotes. Q9SLW7 from SWISSPROT represents a sequence from Nicotiana tabacum (Common tobacco)which is up regulated in response to TMV infection.
Probab=100.00 E-value=8.1e-46 Score=308.83 Aligned_cols=136 Identities=40% Similarity=0.591 Sum_probs=131.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHhhccCCCchhHhHHHHHHHHHHhHHHHHH
Q 023730 120 LPEESLCFIAATAFCGEYLLFNFHSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIFPTSFPIDLSSGIAITLQGLWFYQT 199 (278)
Q Consensus 120 lp~g~~~l~~alAF~~E~lLF~~H~~~~~gle~~~H~LL~~~i~l~~l~~~le~~~p~sf~~~l~rs~~~~lQGtWf~Qi 199 (278)
||+|++++++++||++|++||++|++||+|+|++||.||++++++|++++++|++.|+|++++++||+++++|||||+||
T Consensus 1 lP~~l~~l~~alAF~~e~lLf~~H~~~~~~le~~~H~LL~~~i~~~~~~~~le~~~p~~~~~~~~r~~~~~lqGtWf~Q~ 80 (137)
T PF04819_consen 1 LPVGLEQLFLALAFFVEGLLFYFHSHDHSGLEGRVHSLLLLPIFLCALSTLLEAWFPNSFLAELLRSSSILLQGTWFWQI 80 (137)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCcccCC-cccccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023730 200 AFTLYGPMMPDGCRLKEN-MVSCHSTDSEVRGEFLANFQLFALVFGVLAGVAGSYIF 255 (278)
Q Consensus 200 Gf~Ly~p~~p~Gc~~~~~-~~~C~~~~~~~ra~al~~l~F~~~~~~v~~~~~~~y~~ 255 (278)
|++||+|..|+||+++++ +++|+.+|++||++|++|+||+||+++++++++++|++
T Consensus 81 g~~Ly~p~~p~GC~~~~~~~~~c~~~~~~~r~~~~~~l~F~wh~~~v~~~~~~~y~~ 137 (137)
T PF04819_consen 81 GFILYPPSFPKGCHLDEDSSTGCDWDEDDHRAVMFATLQFCWHLAFVLIFVLVLYGV 137 (137)
T ss_pred HHHhcCCCCCCccccccCCCcCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999933999999875 78999999999999999999999999999999999974
No 2
>PF10355 Ytp1: Protein of unknown function (Ytp1); InterPro: IPR018827 This entry represents a conserved sequence region found a family of fungal proteins. It appears to contain regions similar to mitochondrial electron transport proteins. The C-terminal domain is hydrophobic and negatively charged. There are consensus sites for both N-linked glycosylation and cAMP-dependent protein kinase phosphorylation [].
Probab=97.34 E-value=0.0076 Score=55.75 Aligned_cols=170 Identities=19% Similarity=0.263 Sum_probs=118.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHH-------HHhcCCCCCccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 023730 3 SFIGHVLPGTLFLLVGVWHIWSAVV-------RHVSNPKSFRVRVWNPVPGFDGKLKYMELYVIVIGAFIDMCIELFYST 75 (278)
Q Consensus 3 sf~GH~lpG~~Fl~~Glw~~~~~~~-------~y~~~p~~~~~~~w~p~~~~~~r~r~lEl~~i~~~~~i~i~~El~~~~ 75 (278)
.-.-|..=|..|+.+|+--+-...- .+.++|...+ +.+.+ ..+..+..|..+|.+-++.-++.|-.-.+
T Consensus 25 ~cLAH~IkGg~F~~yGiltl~rylg~~~~~GwaWn~~~~~~~-~~~~~---~~~S~Ef~eS~vI~~yG~tN~F~EH~~~~ 100 (271)
T PF10355_consen 25 QCLAHFIKGGIFFWYGILTLARYLGIFAELGWAWNRKPSRPN-RFWRR---RGPSQEFVESFVIFFYGITNTFTEHLGGW 100 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHcchhhhccccccc-ccccc---CCCCHHHHHHHHHHHHhhHHHHHHhccCC
Confidence 3456889999999999984433322 2233332211 11111 11234799999999999888888874332
Q ss_pred CcceeecCccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcC-------------CCCCChhHHHHHHHHHHHHHHHHHHh
Q 023730 76 HLKFFVNGVLNPHHMNDFEHSGMLLMFVIFGVVTLLSEKTR-------------FLPLPEESLCFIAATAFCGEYLLFNF 142 (278)
Q Consensus 76 ~~~~~~~G~~~~~~l~n~qH~tmy~~F~l~g~v~lls~~~~-------------~~~lp~g~~~l~~alAF~~E~lLF~~ 142 (278)
+|. -..+++||.+|-++|+--|++.++.++++ .-|.| |+..+..+..|.-
T Consensus 101 ------~g~---Ws~~DlQH~si~vm~~~gGl~Gi~le~~~~~~~l~~~~~~~s~Np~P--------alvI~~TG~~MS~ 163 (271)
T PF10355_consen 101 ------GGE---WSHKDLQHTSIGVMWWGGGLCGILLERKRVRWRLNTASYGFSRNPFP--------ALVIFLTGWAMSQ 163 (271)
T ss_pred ------CCC---CCcccchhhhhHHHHHHhhhhhheeeccccchhhccCCCCCCCCCcc--------cHHHHHHHHHHhh
Confidence 221 25678999999999999999999988754 23555 6777788899999
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHhhccC----------CCchhHhHHHHHHHHHHhH
Q 023730 143 HSTTHKGLEGYYHLLLVFLIALCVLSCAAGGIF----------PTSFPIDLSSGIAITLQGL 194 (278)
Q Consensus 143 H~~~~~gle~~~H~LL~~~i~l~~l~~~le~~~----------p~sf~~~l~rs~~~~lQGt 194 (278)
|.++ ..+...+|...-++....+++=++|..+ |+...-+.+-++.++--|.
T Consensus 164 H~Q~-~~~ST~IH~~wG~lL~~a~~~Riit~~~l~~~~~~~~~ps~p~te~l~~F~L~~gGl 224 (271)
T PF10355_consen 164 HHQA-SMISTMIHSQWGYLLMGAGLFRIITICFLLLDPPSSSLPSRPPTELLTPFCLIAGGL 224 (271)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHHheeeEEEecCCCccccCCCCchhHHHHHHHHHHhH
Confidence 9876 7888999999999999999999988754 2344566666666655553
No 3
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.51 E-value=44 Score=31.21 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred cccccCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023730 218 MVSCHSTDSEVRGEFLANFQLFALVFGVLAGVAGSYIF 255 (278)
Q Consensus 218 ~~~C~~~~~~~ra~al~~l~F~~~~~~v~~~~~~~y~~ 255 (278)
.-.|..|+. -.++.+.=+.-+++++++++..|++
T Consensus 261 a~~C~~D~~----~~~vPIaVG~~La~lvlivLiaYli 294 (306)
T PF01299_consen 261 AEECSSDDT----SDLVPIAVGAALAGLVLIVLIAYLI 294 (306)
T ss_pred hhcCCcCCc----cchHHHHHHHHHHHHHHHHHHhhee
Confidence 567987663 5688888888888888889888887
No 4
>PF11052 Tr-sialidase_C: Trans-sialidase of Trypanosoma hydrophobic C-terminal; InterPro: IPR021287 This is a highly conserved region, of about 50aa, that is the very C terminus of a number of more diverse proteins from Trypanosoma cruzi. All members of the family are annotated putatively as being trans-sialidase but this appears to be a diverse group.
Probab=20.74 E-value=94 Score=18.56 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=14.3
Q ss_pred CCcchhhHHHHHHHHHHHHHH
Q 023730 2 GSFIGHVLPGTLFLLVGVWHI 22 (278)
Q Consensus 2 Gsf~GH~lpG~~Fl~~Glw~~ 22 (278)
||.-|..+.-+.++++|+|..
T Consensus 2 gt~~~~~~l~lLLlLLGLwGf 22 (25)
T PF11052_consen 2 GTVRGSGLLPLLLLLLGLWGF 22 (25)
T ss_pred CceeccchHHHHHHHHHHHHH
Confidence 455556666566779999974
No 5
>PF15106 TMEM156: TMEM156 protein family
Probab=16.00 E-value=1.4e+02 Score=26.95 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCCccccccc
Q 023730 236 FQLFALVFGVLAGVAGSYIFVASRY-GNSEFRSLHI 270 (278)
Q Consensus 236 l~F~~~~~~v~~~~~~~y~~~~~~~-g~~~~~~~~~ 270 (278)
..-.|+++..+|+++.+-.++-|-. |+||.+.+..
T Consensus 174 mKITWYvLVllVfiflii~iI~KIle~hrrvqkwq~ 209 (226)
T PF15106_consen 174 MKITWYVLVLLVFIFLIILIIYKILEGHRRVQKWQS 209 (226)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHhh
Confidence 4468999999999998888888887 7887766543
No 6
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=15.70 E-value=1.4e+02 Score=21.34 Aligned_cols=33 Identities=9% Similarity=-0.032 Sum_probs=17.9
Q ss_pred cccccCcccchhhhhhHHHHHHHHHHHHHHHHHH
Q 023730 218 MVSCHSTDSEVRGEFLANFQLFALVFGVLAGVAG 251 (278)
Q Consensus 218 ~~~C~~~~~~~ra~al~~l~F~~~~~~v~~~~~~ 251 (278)
+-+|+.+..+.|.++- +.|..+..++++++++.
T Consensus 21 S~~C~~~~~k~qk~~~-~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 21 SPKCREEYRKRQKRMR-KTQYIFFGIFILFLAVW 53 (59)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5567766666665544 55555554444433333
No 7
>PF14985 TM140: TM140 protein family
Probab=14.80 E-value=3.5e+02 Score=23.39 Aligned_cols=53 Identities=21% Similarity=0.102 Sum_probs=41.4
Q ss_pred CcccCC--cccccCcccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 023730 212 CRLKEN--MVSCHSTDSEV----RGEFLANFQLFALVFGVLAGVAGSYIFVASRYGNSE 264 (278)
Q Consensus 212 c~~~~~--~~~C~~~~~~~----ra~al~~l~F~~~~~~v~~~~~~~y~~~~~~~g~~~ 264 (278)
|-|+|| +.+|+.-.+.. .-+.++---|+.+-+.|...-+..=.+++..+|.++
T Consensus 49 CLWne~~~~LqC~qfpeLealGvp~vgLaLARlgVYgalVltlFvplplLla~cn~~eg 107 (181)
T PF14985_consen 49 CLWNEDTGSLQCHQFPELEALGVPRVGLALARLGVYGALVLTLFVPLPLLLAWCNGDEG 107 (181)
T ss_pred eeecCCcCccccccCchHHHcCCcHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhcCCcc
Confidence 999885 89998755433 225666667899999999988889899999988654
No 8
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=14.51 E-value=1e+03 Score=22.47 Aligned_cols=87 Identities=16% Similarity=0.065 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh---cCCCCCChhHHHHHHHHHHHHHH--HHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 023730 92 DFEHSGMLLMFVIFGVVTLLSEK---TRFLPLPEESLCFIAATAFCGEY--LLFNFHSTTHKGLEGYYHLLLVFLIALCV 166 (278)
Q Consensus 92 n~qH~tmy~~F~l~g~v~lls~~---~~~~~lp~g~~~l~~alAF~~E~--lLF~~H~~~~~gle~~~H~LL~~~i~l~~ 166 (278)
++|+..-...|.+|++..+..-. .+..+.-....+..+..+|..+. +.......||.++.+-+-.+..+.-.+..
T Consensus 5 ~~~~~~~~~~~~~y~ls~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ht~~l~~r~~~~g~~P~snlyE~l~f~aw~~~~ 84 (319)
T CHL00045 5 TLEHILTHISFSLLSIVTLIYWITLLVDEIIGLYDSSEKGMIITFFCITGLLVTRWIYSGHFPLSNLYESLIFLSWSLSI 84 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 34444445555555544433221 11111112344555666777666 44555677889999999888888888888
Q ss_pred HHHHhhccCCCc
Q 023730 167 LSCAAGGIFPTS 178 (278)
Q Consensus 167 l~~~le~~~p~s 178 (278)
+..+.|...|+.
T Consensus 85 v~l~~~~~~~~~ 96 (319)
T CHL00045 85 IHIVPYFKKKKN 96 (319)
T ss_pred HHHHHHHHHHHH
Confidence 888888776665
No 9
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=14.40 E-value=1.3e+02 Score=21.68 Aligned_cols=23 Identities=30% Similarity=0.908 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCCC
Q 023730 183 LSSGIAITLQGLWFYQTAFTLYGPMMPDG 211 (278)
Q Consensus 183 l~rs~~~~lQGtWf~QiGf~Ly~p~~p~G 211 (278)
++-+.+++ .|++|| +|.|-.|.|
T Consensus 39 ~VG~yGFi---VWM~Qi---ifGPPGpp~ 61 (62)
T COG4459 39 FVGGYGFI---VWMFQI---IFGPPGPPG 61 (62)
T ss_pred HhcchhHH---HHHHHH---HhCCCCCCC
Confidence 33444444 599999 577755554
No 10
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=14.01 E-value=6.9e+02 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.622 Sum_probs=21.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 023730 5 IGHVLPGTLFLLVGVWHIWSAVVRH 29 (278)
Q Consensus 5 ~GH~lpG~~Fl~~Glw~~~~~~~~y 29 (278)
..|.+++..++.+|+|-.+++.+..
T Consensus 62 ~~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 62 VTEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4688999999999999999987654
Done!