Query 023730
Match_columns 278
No_of_seqs 160 out of 290
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_D Succinate dehydrogenase 34.9 1.9E+02 0.0064 23.7 10.2 58 148-206 51-109 (156)
2 1sc3_B Interleukin-1 beta conv 13.7 38 0.0013 24.7 -0.1 11 192-202 29-39 (88)
3 2h88_D Succinate dehydrogenase 11.9 4.7E+02 0.016 19.4 10.8 57 149-206 3-60 (103)
4 1qtn_B Caspase-8; apoptosis, d 10.7 54 0.0018 24.2 -0.1 11 192-202 33-43 (95)
5 2ql9_B Caspase-7; cysteine pro 10.6 55 0.0019 24.1 -0.1 11 192-202 31-41 (97)
6 2dko_B Caspase-3; low barrier 10.5 55 0.0019 24.5 -0.1 12 191-202 36-47 (103)
7 1pyo_B Caspase-2; apoptosis, c 10.3 57 0.0019 24.5 -0.1 12 192-203 35-46 (105)
8 3rjm_B Caspase-2; caspase-2, c 10.1 58 0.002 25.2 -0.1 14 191-204 35-48 (117)
9 2xzd_B Caspase-3; hydrolase-pr 8.8 70 0.0024 24.7 -0.1 12 191-202 35-46 (118)
10 2zuq_A Disulfide bond formatio 8.5 7.8E+02 0.027 19.7 8.1 25 217-241 126-150 (176)
No 1
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=34.92 E-value=1.9e+02 Score=23.68 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhc-cCCCchhHhHHHHHHHHHHhHHHHHHHHhhccC
Q 023730 148 KGLEGYYHLLLVFLIALCVLSCAAGG-IFPTSFPIDLSSGIAITLQGLWFYQTAFTLYGP 206 (278)
Q Consensus 148 ~gle~~~H~LL~~~i~l~~l~~~le~-~~p~sf~~~l~rs~~~~lQGtWf~QiGf~Ly~p 206 (278)
+.-|+.+||...-++.++.+-...-. ..| +..++...+.+++++.=|-+|.-.+=|.|
T Consensus 51 sa~~Gs~HW~~ERvtAvaLlpL~~~a~~~~-~pvlD~lLa~al~~H~h~GfqsvI~DYVp 109 (156)
T 3vr8_D 51 PLHSHGTLFKIERYFAAAMVPLIPAAYFIH-GREMDLCLALALTLHVHWGVWGVVNDYGR 109 (156)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 45788999999888777766655433 445 57899999999999999999999999987
No 2
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=13.69 E-value=38 Score=24.75 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=8.6
Q ss_pred HhHHHHHHHHh
Q 023730 192 QGLWFYQTAFT 202 (278)
Q Consensus 192 QGtWf~QiGf~ 202 (278)
+|+||+|.=.-
T Consensus 29 ~GSwfIq~Lc~ 39 (88)
T 1sc3_B 29 MGSVFIGRLIE 39 (88)
T ss_dssp TEEHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 69999997643
No 3
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=11.86 E-value=4.7e+02 Score=19.43 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=44.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhc-cCCCchhHhHHHHHHHHHHhHHHHHHHHhhccC
Q 023730 149 GLEGYYHLLLVFLIALCVLSCAAGG-IFPTSFPIDLSSGIAITLQGLWFYQTAFTLYGP 206 (278)
Q Consensus 149 gle~~~H~LL~~~i~l~~l~~~le~-~~p~sf~~~l~rs~~~~lQGtWf~QiGf~Ly~p 206 (278)
.-++.+|+..+-.+.+..+-.+.-. ..| ++..+...+.++..+.=|-+|.-..=|.|
T Consensus 3 ak~Gs~HW~~eR~~avallpL~p~~~~~~-~pv~d~~l~~~l~~H~~~G~q~vI~DYv~ 60 (103)
T 2h88_D 3 SKAASLHWTSERAVSALLLGLLPAAYLYP-GPAVDYSLAAALTLHGHWGLGQVITDYVH 60 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCeeeecccc
Confidence 3467899999877777666544322 244 46999999999999999999999988876
No 4
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=10.70 E-value=54 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.5
Q ss_pred HhHHHHHHHHh
Q 023730 192 QGLWFYQTAFT 202 (278)
Q Consensus 192 QGtWf~QiGf~ 202 (278)
+|+||+|.=.-
T Consensus 33 ~GSwfIq~Lc~ 43 (95)
T 1qtn_B 33 EGTWYIQSLCQ 43 (95)
T ss_dssp TEEHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 69999997543
No 5
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=10.58 E-value=55 Score=24.15 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=8.7
Q ss_pred HhHHHHHHHHh
Q 023730 192 QGLWFYQTAFT 202 (278)
Q Consensus 192 QGtWf~QiGf~ 202 (278)
+|+||+|.=.-
T Consensus 31 ~GSwfIq~Lc~ 41 (97)
T 2ql9_B 31 RGSWFVQALCS 41 (97)
T ss_dssp TEEHHHHHHHH
T ss_pred CCCeeHHHHHH
Confidence 79999997543
No 6
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=10.54 E-value=55 Score=24.52 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHh
Q 023730 191 LQGLWFYQTAFT 202 (278)
Q Consensus 191 lQGtWf~QiGf~ 202 (278)
-+|+||+|.=.-
T Consensus 36 ~~GSwfIq~Lc~ 47 (103)
T 2dko_B 36 KDGSWFIQSLCA 47 (103)
T ss_dssp TTEEHHHHHHHH
T ss_pred CCCCeeHHHHHH
Confidence 359999997543
No 7
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=10.25 E-value=57 Score=24.52 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=9.0
Q ss_pred HhHHHHHHHHhh
Q 023730 192 QGLWFYQTAFTL 203 (278)
Q Consensus 192 QGtWf~QiGf~L 203 (278)
+|+||+|.=.-.
T Consensus 35 ~GSwFIq~Lc~~ 46 (105)
T 1pyo_B 35 RGSWYIEALAQV 46 (105)
T ss_dssp TEEHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 699999975433
No 8
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=10.11 E-value=58 Score=25.16 Aligned_cols=14 Identities=14% Similarity=0.672 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHhhc
Q 023730 191 LQGLWFYQTAFTLY 204 (278)
Q Consensus 191 lQGtWf~QiGf~Ly 204 (278)
-+|+||+|.=.-.+
T Consensus 35 ~~GSwFIQ~Lc~vl 48 (117)
T 3rjm_B 35 KRGSWYIEALAQVF 48 (117)
T ss_dssp TTEEHHHHHHHHHH
T ss_pred CCCChHHHHHHHHH
Confidence 37999999654433
No 9
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=8.85 E-value=70 Score=24.74 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=9.0
Q ss_pred HHhHHHHHHHHh
Q 023730 191 LQGLWFYQTAFT 202 (278)
Q Consensus 191 lQGtWf~QiGf~ 202 (278)
-+|+||+|.=.-
T Consensus 35 ~~GSwFIQ~Lc~ 46 (118)
T 2xzd_B 35 KDGSWFIQSLCA 46 (118)
T ss_dssp TTEEHHHHHHHH
T ss_pred CCCCccHHHHHH
Confidence 469999997543
No 10
>2zuq_A Disulfide bond formation protein B; disulfide bond, membrane protein, E. coli, cell inner membrane, cell membrane, chaperone, electron transport, membrane; HET: UQ1; 3.30A {Escherichia coli} PDB: 3e9j_C* 2hi7_B* 2leg_B* 2zup_B* 2k73_A 2k74_A*
Probab=8.46 E-value=7.8e+02 Score=19.70 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.9
Q ss_pred CcccccCcccchhhhhhHHHHHHHH
Q 023730 217 NMVSCHSTDSEVRGEFLANFQLFAL 241 (278)
Q Consensus 217 ~~~~C~~~~~~~ra~al~~l~F~~~ 241 (278)
++..|+..+-..=|.++..--+.+.
T Consensus 126 ~~g~C~~~~w~~lGlsmp~wsli~F 150 (176)
T 2zuq_A 126 ASGDCAERQWDFLGLEMPQWLLGIF 150 (176)
T ss_dssp CCCCCCSCCCCSTTSCHHHHHHHHH
T ss_pred CCCCCccccHHHcCCcHHHHHHHHH
Confidence 4688987665555677766554433
Done!