Query 023730
Match_columns 278
No_of_seqs 160 out of 290
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 11:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ha1 g.3.11.7 (A:1-39) Crip 7.6 74 0.0054 18.5 1.2 22 204-225 9-33 (39)
2 d1tc3c_ a.4.1.2 (C:) Transposa 7.6 81 0.0059 19.3 1.4 14 24-37 36-49 (51)
3 d1hvwa_ g.3.6.2 (A:) Atracotox 7.6 82 0.0059 16.3 1.2 6 212-217 8-13 (26)
4 d1q90l_ f.23.24.1 (L:) PetL su 5.2 2.7E+02 0.019 14.9 3.8 26 234-259 3-28 (32)
5 d1ji9a_ g.46.1.1 (A:) Metallot 5.0 1.5E+02 0.011 16.3 1.5 18 208-225 7-24 (37)
6 d1vp2a_ c.51.4.1 (A:) Putative 5.0 80 0.0058 24.2 0.3 33 204-237 148-182 (189)
7 d2hi7b1 a.29.15.1 (B:14-162) D 5.0 5.1E+02 0.037 17.9 6.8 21 218-238 114-134 (149)
8 d2i10a2 a.121.1.1 (A:79-194) P 4.5 4.7E+02 0.034 16.9 5.1 34 206-240 21-54 (116)
9 d2axtb1 f.55.1.1 (B:2-489) Pho 4.0 2.3E+02 0.017 25.1 2.7 20 5-24 199-218 (488)
10 d2axtc1 f.55.1.1 (C:27-473) Ph 3.9 2.2E+02 0.016 24.9 2.5 20 5-24 209-228 (447)
No 1
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.64 E-value=74 Score=18.46 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=15.0
Q ss_pred ccCCCCCCCccc---CCcccccCcc
Q 023730 204 YGPMMPDGCRLK---ENMVSCHSTD 225 (278)
Q Consensus 204 y~p~~p~Gc~~~---~~~~~C~~~~ 225 (278)
...++|++|.+- .|..+|-++.
T Consensus 9 Hg~w~~k~CslCrC~~G~lhCfpq~ 33 (39)
T d2j5ha1 9 HGTWLPKKCSLCRCWHGQLHCLPQT 33 (39)
T ss_dssp CTTCSSCCCCCCCCCSSSCCSCCSS
T ss_pred CCceecccceEEEeccCceeecccc
Confidence 334789999983 3677776543
No 2
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=7.60 E-value=81 Score=19.27 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=11.1
Q ss_pred HHHHHHhcCCCCCc
Q 023730 24 SAVVRHVSNPKSFR 37 (278)
Q Consensus 24 ~~~~~y~~~p~~~~ 37 (278)
+.+++|+.+|-+|.
T Consensus 36 ~~ir~Yl~~Pl~YG 49 (51)
T d1tc3c_ 36 HCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHHCSTTTT
T ss_pred HHHHHHhcChhhcc
Confidence 56889999997764
No 3
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=7.57 E-value=82 Score=16.28 Aligned_cols=6 Identities=50% Similarity=1.043 Sum_probs=4.2
Q ss_pred CcccCC
Q 023730 212 CRLKEN 217 (278)
Q Consensus 212 c~~~~~ 217 (278)
||.+|+
T Consensus 8 cpynen 13 (26)
T d1hvwa_ 8 CPYNEN 13 (26)
T ss_dssp CSSTTS
T ss_pred CCCCcc
Confidence 677775
No 4
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.16 E-value=2.7e+02 Score=14.87 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023730 234 ANFQLFALVFGVLAGVAGSYIFVASR 259 (278)
Q Consensus 234 ~~l~F~~~~~~v~~~~~~~y~~~~~~ 259 (278)
.-.-+...++..+.+.+++|..+-|.
T Consensus 3 ti~syvglligal~~tlgiylgllkv 28 (32)
T d1q90l_ 3 TITSYVGLLIGALVFTLGIYLGLLKV 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778889999999999987764
No 5
>d1ji9a_ g.46.1.1 (A:) Metallothionein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.05 E-value=1.5e+02 Score=16.33 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=12.5
Q ss_pred CCCCCcccCCcccccCcc
Q 023730 208 MPDGCRLKENMVSCHSTD 225 (278)
Q Consensus 208 ~p~Gc~~~~~~~~C~~~~ 225 (278)
-|.||..-..+-.|.++|
T Consensus 7 cpagcekcakdcvckgee 24 (37)
T d1ji9a_ 7 CPAGCEKCAKDCVCKGEE 24 (37)
T ss_dssp SCTTCTTTTTTCTTCCCS
T ss_pred chhhHHHHHhhceecCcc
Confidence 367887755566788766
No 6
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=5.00 E-value=80 Score=24.16 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=17.9
Q ss_pred ccC-CCCCCCcccCCcccccC-cccchhhhhhHHHH
Q 023730 204 YGP-MMPDGCRLKENMVSCHS-TDSEVRGEFLANFQ 237 (278)
Q Consensus 204 y~p-~~p~Gc~~~~~~~~C~~-~~~~~ra~al~~l~ 237 (278)
|.| |+|+|....-.... +- ..-.||++|+-.+.
T Consensus 148 yDpiF~p~g~~kT~aEm~-~eKn~iSHR~~A~~kl~ 182 (189)
T d1vp2a_ 148 YDPFFIPDGYDKTFGEIP-HLKEKISHRSKAFRKLF 182 (189)
T ss_dssp TGGGEEETTCSSCTTTCG-GGHHHHSHHHHHHHHHH
T ss_pred CCeEEEECCCCcchhhCH-hhHHhcCHHHHHHHHHH
Confidence 677 78887654211111 00 11258999987653
No 7
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=4.96 E-value=5.1e+02 Score=17.94 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=3.0
Q ss_pred cccccCcccchhhhhhHHHHH
Q 023730 218 MVSCHSTDSEVRGEFLANFQL 238 (278)
Q Consensus 218 ~~~C~~~~~~~ra~al~~l~F 238 (278)
..+|+..+-..=|.+++.--+
T Consensus 114 ~~~C~e~~w~~lGlSma~wn~ 134 (149)
T d2hi7b1 114 SGDSAERQWDFLGLEMPQWLL 134 (149)
T ss_dssp ---------------CHHHHH
T ss_pred CCCcccccchhcccCHHHHHH
Confidence 567886554555677774333
No 8
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=4.49 E-value=4.7e+02 Score=16.90 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCCCCCCcccCCcccccCcccchhhhhhHHHHHHH
Q 023730 206 PMMPDGCRLKENMVSCHSTDSEVRGEFLANFQLFA 240 (278)
Q Consensus 206 p~~p~Gc~~~~~~~~C~~~~~~~ra~al~~l~F~~ 240 (278)
|-.|+||......+.+...+...| ..+.+..--|
T Consensus 21 ~~~p~GCl~~~~~~E~~~~d~~i~-~~l~~~~~~~ 54 (116)
T d2i10a2 21 PGQPFGCMTVQAGLASGEPHHEIV-DLLTAAREQM 54 (116)
T ss_dssp -----CCCCSSCBTTTBCCCHHHH-HHHHHHHHHH
T ss_pred CCCCCCCHHHHhHhhcccchHHHH-HHHHHHHHHH
Confidence 567899999765555555555555 3333333333
No 9
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting protein PsbB {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.98 E-value=2.3e+02 Score=25.10 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 023730 5 IGHVLPGTLFLLVGVWHIWS 24 (278)
Q Consensus 5 ~GH~lpG~~Fl~~Glw~~~~ 24 (278)
.||+.-|+..++=|+||+..
T Consensus 199 GGHi~vG~l~I~GGiwHI~t 218 (488)
T d2axtb1 199 AHHIAAGIVGIIAGLFHILV 218 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred echHHHHHHHHhhhEEEEee
Confidence 48999999999999999865
No 10
>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.93 E-value=2.2e+02 Score=24.90 Aligned_cols=20 Identities=35% Similarity=0.803 Sum_probs=18.0
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 023730 5 IGHVLPGTLFLLVGVWHIWS 24 (278)
Q Consensus 5 ~GH~lpG~~Fl~~Glw~~~~ 24 (278)
.||+.-|+..++=|+||+..
T Consensus 209 ggHi~~g~~~I~GGiwHI~t 228 (447)
T d2axtc1 209 GGHIWIGLICIAGGIWHILT 228 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHhheeeeec
Confidence 47999999999999999864
Done!