Query 023731
Match_columns 278
No_of_seqs 151 out of 2271
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0572 Udk Uridine kinase [Nu 100.0 5.5E-37 1.2E-41 252.6 17.4 207 46-253 6-212 (218)
2 PTZ00301 uridine kinase; Provi 100.0 4.4E-33 9.5E-38 232.6 19.4 202 48-250 3-208 (210)
3 PRK05480 uridine/cytidine kina 100.0 4E-30 8.7E-35 216.0 19.6 205 45-250 3-207 (209)
4 PF00485 PRK: Phosphoribulokin 100.0 3.8E-30 8.2E-35 213.7 11.0 184 50-235 1-192 (194)
5 TIGR00235 udk uridine kinase. 100.0 1.4E-28 3E-33 206.4 17.9 204 45-249 3-206 (207)
6 cd02023 UMPK Uridine monophosp 100.0 2.6E-28 5.7E-33 203.3 18.1 196 50-246 1-196 (198)
7 PLN02318 phosphoribulokinase/u 100.0 8.9E-28 1.9E-32 222.4 15.1 217 45-270 62-291 (656)
8 cd02029 PRK_like Phosphoribulo 100.0 2.9E-27 6.2E-32 200.9 16.8 178 50-229 1-200 (277)
9 cd02025 PanK Pantothenate kina 99.9 3.5E-26 7.6E-31 193.0 15.6 183 50-234 1-213 (220)
10 PLN02348 phosphoribulokinase 99.9 8.3E-26 1.8E-30 201.6 17.6 183 44-231 45-244 (395)
11 PRK15453 phosphoribulokinase; 99.9 5.8E-25 1.3E-29 188.2 17.8 183 46-229 3-206 (290)
12 cd02028 UMPK_like Uridine mono 99.9 1.7E-25 3.7E-30 183.2 14.0 175 50-229 1-178 (179)
13 TIGR00554 panK_bact pantothena 99.9 2.9E-25 6.4E-30 193.2 15.8 187 45-233 59-280 (290)
14 PRK05439 pantothenate kinase; 99.9 3.5E-25 7.5E-30 194.0 15.6 189 44-234 82-301 (311)
15 PRK07429 phosphoribulokinase; 99.9 3.6E-23 7.8E-28 183.5 17.5 183 45-232 5-187 (327)
16 cd02026 PRK Phosphoribulokinas 99.9 2.7E-23 5.9E-28 180.5 15.8 178 50-232 1-178 (273)
17 KOG4203 Armadillo/beta-Catenin 99.9 8.3E-24 1.8E-28 195.0 9.4 234 44-277 40-282 (473)
18 PRK06696 uridine kinase; Valid 99.9 2.6E-22 5.6E-27 170.2 12.9 184 45-232 19-211 (223)
19 cd02024 NRK1 Nicotinamide ribo 99.9 1.6E-22 3.5E-27 165.6 11.1 142 50-193 1-155 (187)
20 PRK09270 nucleoside triphospha 99.9 1.3E-21 2.9E-26 166.4 15.7 188 44-235 29-225 (229)
21 PRK07667 uridine kinase; Provi 99.8 1E-20 2.2E-25 156.9 12.4 172 46-229 15-193 (193)
22 PRK08233 hypothetical protein; 99.8 1.5E-18 3.3E-23 142.2 14.4 174 47-250 2-176 (182)
23 PRK06547 hypothetical protein; 99.8 8.7E-18 1.9E-22 136.4 12.3 154 44-229 11-171 (172)
24 COG1072 CoaA Panthothenate kin 99.8 1.5E-17 3.3E-22 140.7 14.1 146 44-191 78-233 (283)
25 PRK14730 coaE dephospho-CoA ki 99.7 2E-18 4.3E-23 143.2 5.7 172 49-248 2-191 (195)
26 PRK00081 coaE dephospho-CoA ki 99.7 5.7E-18 1.2E-22 140.5 7.0 173 48-249 2-191 (194)
27 PRK14733 coaE dephospho-CoA ki 99.7 6.8E-18 1.5E-22 140.1 6.3 161 46-232 4-182 (204)
28 PRK14732 coaE dephospho-CoA ki 99.7 6.5E-18 1.4E-22 140.1 5.8 160 50-234 1-177 (196)
29 PTZ00451 dephospho-CoA kinase; 99.7 6.1E-18 1.3E-22 144.1 5.8 205 48-273 1-232 (244)
30 PF01121 CoaE: Dephospho-CoA k 99.7 1E-18 2.3E-23 142.6 0.6 160 49-233 1-177 (180)
31 cd02022 DPCK Dephospho-coenzym 99.7 1.2E-17 2.7E-22 136.8 6.1 165 50-233 1-176 (179)
32 PLN02422 dephospho-CoA kinase 99.7 1.9E-17 4E-22 139.8 6.6 164 49-235 2-182 (232)
33 COG1126 GlnQ ABC-type polar am 99.7 5.7E-17 1.2E-21 132.6 8.0 143 9-166 2-172 (240)
34 PRK14734 coaE dephospho-CoA ki 99.7 1.2E-16 2.5E-21 133.1 9.4 163 49-234 2-181 (200)
35 KOG3308 Uncharacterized protei 99.7 1.9E-16 4.1E-21 127.6 8.8 178 47-232 3-188 (225)
36 COG1102 Cmk Cytidylate kinase 99.7 3.7E-17 8.1E-22 127.5 3.2 153 49-235 1-159 (179)
37 PRK14731 coaE dephospho-CoA ki 99.7 1.8E-16 3.9E-21 132.9 7.2 176 46-248 3-199 (208)
38 COG0237 CoaE Dephospho-CoA kin 99.6 1.4E-16 2.9E-21 132.0 5.2 164 47-236 1-181 (201)
39 PRK13477 bifunctional pantoate 99.6 7.4E-16 1.6E-20 143.5 10.3 203 15-249 266-501 (512)
40 COG3839 MalK ABC-type sugar tr 99.6 4.5E-16 9.8E-21 137.4 7.8 161 9-184 3-199 (338)
41 COG1131 CcmA ABC-type multidru 99.6 1.3E-15 2.8E-20 134.1 9.2 164 9-187 4-204 (293)
42 COG1116 TauB ABC-type nitrate/ 99.6 1.1E-15 2.4E-20 128.1 8.0 159 10-183 4-195 (248)
43 COG1120 FepC ABC-type cobalami 99.6 1.8E-16 3.9E-21 135.0 3.1 140 9-163 2-171 (258)
44 COG0283 Cmk Cytidylate kinase 99.6 6.9E-16 1.5E-20 126.4 5.9 185 48-250 4-218 (222)
45 PLN03046 D-glycerate 3-kinase; 99.6 1.9E-14 4E-19 129.4 14.0 170 46-218 210-430 (460)
46 TIGR00152 dephospho-CoA kinase 99.6 1.7E-15 3.7E-20 125.1 6.6 169 50-245 1-186 (188)
47 PRK03333 coaE dephospho-CoA ki 99.6 4.6E-16 1E-20 142.1 3.3 174 49-247 2-192 (395)
48 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 1.1E-15 2.3E-20 129.7 4.9 141 9-164 4-173 (254)
49 COG1117 PstB ABC-type phosphat 99.6 1.2E-14 2.7E-19 118.6 10.1 166 9-189 7-217 (253)
50 COG2884 FtsE Predicted ATPase 99.6 7.9E-15 1.7E-19 117.7 8.7 167 9-190 1-207 (223)
51 COG3842 PotA ABC-type spermidi 99.6 3.8E-15 8.2E-20 132.3 6.0 161 9-184 5-202 (352)
52 KOG2702 Predicted panthothenat 99.6 1.9E-14 4E-19 118.5 9.2 147 44-192 115-282 (323)
53 COG1124 DppF ABC-type dipeptid 99.5 1.5E-14 3.3E-19 120.5 8.0 141 9-164 3-175 (252)
54 PLN02796 D-glycerate 3-kinase 99.5 1.3E-13 2.9E-18 122.0 14.0 116 46-163 98-233 (347)
55 COG1428 Deoxynucleoside kinase 99.5 2.5E-15 5.4E-20 122.9 2.5 199 47-250 3-211 (216)
56 COG1125 OpuBA ABC-type proline 99.5 7E-14 1.5E-18 117.1 10.5 160 9-184 1-201 (309)
57 KOG3220 Similar to bacterial d 99.5 6.4E-15 1.4E-19 118.8 3.5 164 48-234 1-181 (225)
58 PRK13537 nodulation ABC transp 99.5 2.9E-14 6.3E-19 126.4 7.9 167 6-187 4-205 (306)
59 cd02020 CMPK Cytidine monophos 99.5 1.2E-13 2.6E-18 108.9 10.5 145 50-231 1-147 (147)
60 PRK13536 nodulation factor exp 99.5 4.3E-14 9.4E-19 126.8 8.3 164 9-187 41-239 (340)
61 COG1136 SalX ABC-type antimicr 99.5 6.2E-14 1.3E-18 117.2 8.4 139 10-164 2-176 (226)
62 COG1127 Ttg2A ABC-type transpo 99.5 4.6E-14 9.9E-19 117.4 7.4 141 7-163 6-178 (263)
63 COG3638 ABC-type phosphate/pho 99.5 4.7E-14 1E-18 117.0 7.3 141 9-165 3-182 (258)
64 COG1134 TagH ABC-type polysacc 99.5 1.2E-13 2.5E-18 115.4 8.4 134 21-169 41-186 (249)
65 COG0703 AroK Shikimate kinase 99.5 1.4E-13 3.1E-18 110.0 7.8 161 48-246 2-167 (172)
66 PRK11432 fbpC ferric transport 99.5 1.6E-13 3.4E-18 123.7 8.5 159 9-182 6-200 (351)
67 TIGR03265 PhnT2 putative 2-ami 99.5 1.4E-13 3E-18 124.2 8.1 160 9-183 4-199 (353)
68 COG1118 CysA ABC-type sulfate/ 99.5 2.1E-13 4.6E-18 117.0 8.8 161 9-184 2-203 (345)
69 COG4555 NatA ABC-type Na+ tran 99.5 9.6E-14 2.1E-18 112.5 6.3 140 9-163 1-166 (245)
70 TIGR00017 cmk cytidylate kinas 99.5 1.3E-13 2.8E-18 116.1 7.1 188 48-247 2-215 (217)
71 PRK06762 hypothetical protein; 99.5 2.5E-12 5.4E-17 103.9 14.3 153 47-248 1-161 (166)
72 PRK11650 ugpC glycerol-3-phosp 99.5 1.6E-13 3.6E-18 123.8 8.0 160 9-183 3-199 (356)
73 PRK04182 cytidylate kinase; Pr 99.5 6.5E-14 1.4E-18 114.3 4.8 169 49-250 1-172 (180)
74 PRK00131 aroK shikimate kinase 99.4 3.5E-13 7.7E-18 109.3 9.0 160 46-247 2-171 (175)
75 PRK01184 hypothetical protein; 99.4 3.4E-13 7.4E-18 110.8 8.9 169 48-248 1-175 (184)
76 PRK05057 aroK shikimate kinase 99.4 8.8E-13 1.9E-17 107.3 11.1 156 48-248 4-168 (172)
77 COG1135 AbcC ABC-type metal io 99.4 4.4E-13 9.5E-18 115.3 9.3 160 15-190 8-212 (339)
78 PRK09452 potA putrescine/sperm 99.4 2.7E-13 5.9E-18 123.0 8.2 164 6-184 11-210 (375)
79 cd03259 ABC_Carb_Solutes_like 99.4 2.9E-13 6.3E-18 113.8 7.7 135 15-164 7-164 (213)
80 TIGR00960 3a0501s02 Type II (G 99.4 2.1E-13 4.6E-18 114.9 6.8 141 9-165 1-173 (216)
81 PRK09536 btuD corrinoid ABC tr 99.4 3.9E-13 8.4E-18 122.9 9.0 141 9-164 3-173 (402)
82 TIGR02673 FtsE cell division A 99.4 2.4E-13 5.2E-18 114.4 7.0 141 9-165 1-172 (214)
83 PRK06217 hypothetical protein; 99.4 1.6E-12 3.5E-17 106.8 11.4 106 48-191 1-106 (183)
84 PRK08118 topology modulation p 99.4 2E-13 4.3E-18 110.5 5.4 99 49-190 2-100 (167)
85 TIGR01288 nodI ATP-binding ABC 99.4 4.3E-13 9.2E-18 118.9 7.9 143 9-166 4-171 (303)
86 PRK11000 maltose/maltodextrin 99.4 4.5E-13 9.8E-18 121.7 8.1 159 9-182 3-197 (369)
87 cd03225 ABC_cobalt_CbiO_domain 99.4 4.4E-13 9.5E-18 112.6 7.5 135 15-165 6-169 (211)
88 cd03269 ABC_putative_ATPase Th 99.4 5E-13 1.1E-17 112.2 7.8 136 15-165 7-163 (210)
89 COG4619 ABC-type uncharacteriz 99.4 4.8E-13 1E-17 105.5 6.8 153 21-189 17-204 (223)
90 TIGR02314 ABC_MetN D-methionin 99.4 5.2E-13 1.1E-17 119.8 8.0 140 9-164 1-174 (343)
91 PRK11153 metN DL-methionine tr 99.4 4.8E-13 1E-17 120.4 7.8 140 9-164 1-174 (343)
92 PRK11248 tauB taurine transpor 99.4 4.7E-13 1E-17 115.7 7.5 141 9-164 1-162 (255)
93 PRK13949 shikimate kinase; Pro 99.4 3.6E-13 7.9E-18 109.2 6.3 156 49-246 2-166 (169)
94 PRK11860 bifunctional 3-phosph 99.4 7.3E-13 1.6E-17 128.8 9.4 184 47-249 441-653 (661)
95 COG0411 LivG ABC-type branched 99.4 2.4E-13 5.3E-18 113.4 5.1 141 9-164 4-183 (250)
96 cd03293 ABC_NrtD_SsuB_transpor 99.4 5.1E-13 1.1E-17 112.9 7.2 136 15-165 7-166 (220)
97 TIGR03522 GldA_ABC_ATP gliding 99.4 6.1E-13 1.3E-17 117.8 7.9 141 10-165 3-168 (301)
98 cd03258 ABC_MetN_methionine_tr 99.4 5.8E-13 1.3E-17 113.6 7.5 140 9-164 1-174 (233)
99 TIGR01188 drrA daunorubicin re 99.4 5.1E-13 1.1E-17 118.3 7.4 135 16-165 1-159 (302)
100 COG0410 LivF ABC-type branched 99.4 4.3E-13 9.4E-18 111.1 5.9 142 9-165 3-171 (237)
101 TIGR02173 cyt_kin_arch cytidyl 99.4 3.5E-13 7.7E-18 109.1 5.2 164 49-246 1-167 (171)
102 cd03296 ABC_CysA_sulfate_impor 99.4 9E-13 1.9E-17 112.9 8.0 142 10-166 3-172 (239)
103 cd03263 ABC_subfamily_A The AB 99.4 7.8E-13 1.7E-17 111.8 7.5 136 15-165 7-168 (220)
104 PRK00023 cmk cytidylate kinase 99.4 9.5E-13 2.1E-17 111.6 8.0 188 48-247 4-221 (225)
105 cd03218 ABC_YhbG The ABC trans 99.4 9.8E-13 2.1E-17 112.0 8.0 136 15-165 7-168 (232)
106 cd03266 ABC_NatA_sodium_export 99.4 6E-13 1.3E-17 112.3 6.6 142 9-165 1-171 (218)
107 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 4.9E-13 1.1E-17 112.8 6.0 135 15-164 7-174 (218)
108 PRK11607 potG putrescine trans 99.4 9.1E-13 2E-17 119.8 8.1 161 8-183 18-214 (377)
109 cd03226 ABC_cobalt_CbiO_domain 99.4 1.7E-12 3.6E-17 108.6 9.0 133 15-166 6-162 (205)
110 PRK13948 shikimate kinase; Pro 99.4 3.2E-12 7E-17 104.6 10.3 163 46-247 8-175 (182)
111 cd03265 ABC_DrrA DrrA is the A 99.4 9.7E-13 2.1E-17 111.2 7.5 134 15-165 7-166 (220)
112 cd03224 ABC_TM1139_LivF_branch 99.4 9.4E-13 2E-17 111.4 7.4 134 15-165 7-167 (222)
113 PRK10584 putative ABC transpor 99.4 4.7E-13 1E-17 113.7 5.6 142 8-164 5-180 (228)
114 PRK00625 shikimate kinase; Pro 99.4 2.3E-12 4.9E-17 104.7 9.2 158 50-247 2-169 (173)
115 PRK10908 cell division protein 99.4 1E-12 2.2E-17 111.2 7.3 140 9-164 1-171 (222)
116 PRK09518 bifunctional cytidyla 99.4 2.8E-12 6.1E-17 125.8 11.2 190 49-253 2-237 (712)
117 PRK10851 sulfate/thiosulfate t 99.4 1.3E-12 2.9E-17 117.9 8.2 159 10-183 3-201 (353)
118 PRK13946 shikimate kinase; Pro 99.4 5.8E-12 1.3E-16 103.6 11.4 163 47-248 9-177 (184)
119 PRK11629 lolD lipoprotein tran 99.4 7.2E-13 1.6E-17 113.0 6.2 141 9-164 5-179 (233)
120 PRK13650 cbiO cobalt transport 99.4 4.1E-13 9E-18 117.6 4.6 143 6-164 1-174 (279)
121 PRK13647 cbiO cobalt transport 99.4 9.9E-13 2.1E-17 114.9 6.7 140 9-164 4-172 (274)
122 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 8.2E-13 1.8E-17 112.9 6.0 140 10-164 2-166 (236)
123 PRK10078 ribose 1,5-bisphospho 99.4 7.7E-12 1.7E-16 103.0 11.5 171 47-253 1-178 (186)
124 TIGR01186 proV glycine betaine 99.4 1.5E-12 3.3E-17 117.6 7.8 151 16-182 1-193 (363)
125 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.4 1.5E-12 3.3E-17 110.4 7.3 139 11-164 25-176 (224)
126 cd03219 ABC_Mj1267_LivG_branch 99.4 2.2E-12 4.7E-17 110.2 8.4 135 15-164 7-177 (236)
127 COG1129 MglA ABC-type sugar tr 99.4 2.8E-12 6.1E-17 118.2 9.4 160 9-183 8-209 (500)
128 TIGR02315 ABC_phnC phosphonate 99.4 1.9E-12 4.2E-17 111.0 7.9 141 9-164 1-179 (243)
129 cd03292 ABC_FtsE_transporter F 99.4 1.3E-12 2.8E-17 109.9 6.5 135 15-165 7-171 (214)
130 cd03261 ABC_Org_Solvent_Resist 99.4 2.1E-12 4.6E-17 110.2 7.9 134 15-164 7-170 (235)
131 PRK04040 adenylate kinase; Pro 99.4 3.8E-12 8.2E-17 104.9 9.1 172 48-244 2-186 (188)
132 PRK11831 putative ABC transpor 99.3 2E-12 4.4E-17 112.6 7.8 144 6-165 4-178 (269)
133 cd03235 ABC_Metallic_Cations A 99.3 2.3E-12 5.1E-17 108.3 7.9 136 15-165 6-167 (213)
134 PRK13548 hmuV hemin importer A 99.3 2.6E-12 5.7E-17 111.3 8.4 141 9-164 2-174 (258)
135 cd03301 ABC_MalK_N The N-termi 99.3 1.9E-12 4.1E-17 108.9 7.3 131 15-164 7-164 (213)
136 cd03215 ABC_Carb_Monos_II This 99.3 2.2E-12 4.9E-17 105.9 7.5 130 9-165 4-139 (182)
137 PRK13636 cbiO cobalt transport 99.3 1.6E-12 3.4E-17 114.2 6.9 143 8-165 4-176 (283)
138 COG4604 CeuD ABC-type enteroch 99.3 4E-12 8.6E-17 102.9 8.5 140 9-163 1-168 (252)
139 cd03264 ABC_drug_resistance_li 99.3 1.7E-12 3.7E-17 109.0 6.7 132 15-164 7-164 (211)
140 PRK10575 iron-hydroxamate tran 99.3 2.5E-12 5.4E-17 111.9 7.9 142 9-165 11-182 (265)
141 PRK10247 putative ABC transpor 99.3 1.8E-12 3.9E-17 110.0 6.8 139 9-164 7-171 (225)
142 PRK10762 D-ribose transporter 99.3 4.6E-12 9.9E-17 119.8 10.2 142 8-164 3-175 (501)
143 PRK10895 lipopolysaccharide AB 99.3 2.7E-12 5.9E-17 110.0 7.9 139 9-165 3-172 (241)
144 TIGR02211 LolD_lipo_ex lipopro 99.3 1.3E-12 2.8E-17 110.5 5.6 140 10-164 2-175 (221)
145 COG3840 ThiQ ABC-type thiamine 99.3 4.5E-12 9.8E-17 101.3 8.2 124 44-167 21-166 (231)
146 TIGR03258 PhnT 2-aminoethylpho 99.3 3E-12 6.6E-17 115.8 8.2 158 10-182 6-202 (362)
147 PRK05541 adenylylsulfate kinas 99.3 2.7E-11 5.8E-16 98.8 13.1 42 44-85 3-46 (176)
148 cd03268 ABC_BcrA_bacitracin_re 99.3 3.5E-12 7.6E-17 106.9 8.0 132 15-165 7-161 (208)
149 PRK09493 glnQ glutamine ABC tr 99.3 2.8E-12 6E-17 109.9 7.4 142 9-165 1-171 (240)
150 PRK13538 cytochrome c biogenes 99.3 1.6E-12 3.5E-17 108.6 5.8 138 9-164 1-163 (204)
151 TIGR03410 urea_trans_UrtE urea 99.3 3.3E-12 7.1E-17 108.7 7.7 134 15-164 7-165 (230)
152 PRK11264 putative amino-acid A 99.3 4.2E-12 9.1E-17 109.4 8.5 58 9-81 3-63 (250)
153 PRK13635 cbiO cobalt transport 99.3 1.1E-12 2.4E-17 114.8 5.0 140 9-164 5-174 (279)
154 PRK13549 xylose transporter AT 99.3 4.1E-12 8.9E-17 120.3 9.0 140 9-164 5-177 (506)
155 cd03256 ABC_PhnC_transporter A 99.3 4E-12 8.7E-17 108.9 8.2 135 15-164 7-178 (241)
156 PRK13947 shikimate kinase; Pro 99.3 1.7E-11 3.8E-16 99.3 11.5 155 50-247 3-163 (171)
157 PRK09984 phosphonate/organopho 99.3 4.2E-12 9E-17 110.2 8.3 53 7-74 2-56 (262)
158 PRK13638 cbiO cobalt transport 99.3 2.2E-12 4.7E-17 112.6 6.5 141 9-164 1-170 (271)
159 PRK10070 glycine betaine trans 99.3 3.5E-12 7.5E-17 116.6 8.1 129 22-165 43-199 (400)
160 cd03295 ABC_OpuCA_Osmoprotecti 99.3 3.3E-12 7.1E-17 109.6 7.4 135 15-164 7-169 (242)
161 TIGR00972 3a0107s01c2 phosphat 99.3 3.8E-12 8.3E-17 109.5 7.8 141 9-164 1-178 (247)
162 PRK13637 cbiO cobalt transport 99.3 3.3E-12 7.3E-17 112.3 7.6 140 10-164 3-178 (287)
163 cd03297 ABC_ModC_molybdenum_tr 99.3 3.9E-12 8.5E-17 107.0 7.7 140 9-165 1-166 (214)
164 COG1122 CbiO ABC-type cobalt t 99.3 4.5E-12 9.7E-17 107.6 8.0 141 9-164 3-172 (235)
165 PRK08356 hypothetical protein; 99.3 1.2E-11 2.6E-16 102.7 10.4 180 47-249 4-190 (195)
166 cd03260 ABC_PstB_phosphate_tra 99.3 4.8E-12 1E-16 107.5 8.2 136 15-165 7-176 (227)
167 cd03257 ABC_NikE_OppD_transpor 99.3 4.8E-12 1E-16 107.4 8.2 50 10-74 2-57 (228)
168 TIGR03608 L_ocin_972_ABC putat 99.3 2.1E-12 4.6E-17 108.0 5.9 135 15-164 5-168 (206)
169 PRK10418 nikD nickel transport 99.3 6.8E-12 1.5E-16 108.4 9.1 139 8-164 3-174 (254)
170 PRK07261 topology modulation p 99.3 2.8E-12 6.1E-17 104.2 6.3 104 50-196 2-106 (171)
171 PRK09544 znuC high-affinity zi 99.3 5.6E-12 1.2E-16 108.7 8.5 136 9-164 4-154 (251)
172 PRK11247 ssuB aliphatic sulfon 99.3 5.9E-12 1.3E-16 108.9 8.6 136 9-165 12-168 (257)
173 PRK14267 phosphate ABC transpo 99.3 5.5E-12 1.2E-16 108.9 8.3 63 6-83 1-71 (253)
174 COG2274 SunT ABC-type bacterio 99.3 2.5E-12 5.4E-17 124.7 6.7 138 21-164 472-643 (709)
175 cd03230 ABC_DR_subfamily_A Thi 99.3 3.3E-12 7.2E-17 104.0 6.5 122 15-165 7-130 (173)
176 COG4240 Predicted kinase [Gene 99.3 1.5E-11 3.2E-16 101.4 10.1 118 44-163 46-177 (300)
177 PRK13633 cobalt transporter AT 99.3 1.8E-12 3.8E-17 113.7 5.1 145 6-165 1-179 (280)
178 PRK11231 fecE iron-dicitrate t 99.3 6.3E-12 1.4E-16 108.7 8.5 143 9-166 2-174 (255)
179 PRK13643 cbiO cobalt transport 99.3 3.8E-12 8.3E-17 112.0 7.2 142 9-165 1-179 (288)
180 TIGR01166 cbiO cobalt transpor 99.3 2.1E-12 4.5E-17 106.7 5.1 129 21-164 6-161 (190)
181 cd03262 ABC_HisP_GlnQ_permease 99.3 4.2E-12 9.2E-17 106.7 7.1 136 15-165 7-170 (213)
182 TIGR03411 urea_trans_UrtD urea 99.3 6.8E-12 1.5E-16 107.6 8.4 142 9-165 2-178 (242)
183 PRK13652 cbiO cobalt transport 99.3 4E-12 8.6E-17 111.3 7.1 140 9-164 3-171 (277)
184 PRK13632 cbiO cobalt transport 99.3 1.6E-12 3.5E-17 113.4 4.5 137 9-164 7-176 (271)
185 cd03228 ABCC_MRP_Like The MRP 99.3 2.1E-12 4.5E-17 105.0 4.8 120 15-164 7-130 (171)
186 PRK14737 gmk guanylate kinase; 99.3 7.2E-12 1.6E-16 103.1 8.0 175 46-249 2-182 (186)
187 cd03298 ABC_ThiQ_thiamine_tran 99.3 8.5E-12 1.9E-16 104.7 8.7 135 15-165 7-163 (211)
188 PRK11614 livF leucine/isoleuci 99.3 4.2E-12 9.1E-17 108.6 6.7 140 9-165 5-172 (237)
189 PRK14247 phosphate ABC transpo 99.3 7.6E-12 1.6E-16 107.8 8.3 50 9-73 3-54 (250)
190 PRK11124 artP arginine transpo 99.3 5.9E-12 1.3E-16 108.0 7.6 142 9-165 2-176 (242)
191 COG0529 CysC Adenylylsulfate k 99.3 7.1E-11 1.5E-15 93.9 13.0 171 36-252 11-192 (197)
192 TIGR00968 3a0106s01 sulfate AB 99.3 6.2E-12 1.3E-16 107.6 7.6 135 15-164 7-164 (237)
193 PRK13634 cbiO cobalt transport 99.3 4.3E-12 9.3E-17 111.8 6.8 141 10-165 3-180 (290)
194 PRK15112 antimicrobial peptide 99.3 5.9E-12 1.3E-16 109.6 7.6 143 7-165 2-184 (267)
195 PRK10771 thiQ thiamine transpo 99.3 7.1E-12 1.5E-16 106.8 7.9 140 9-164 1-163 (232)
196 PRK14250 phosphate ABC transpo 99.3 8.3E-12 1.8E-16 107.0 8.3 139 10-164 4-165 (241)
197 PRK15439 autoinducer 2 ABC tra 99.3 5.5E-12 1.2E-16 119.5 7.9 143 6-164 8-174 (510)
198 PRK13648 cbiO cobalt transport 99.3 2.6E-12 5.7E-17 111.9 5.1 140 9-164 7-176 (269)
199 PRK13639 cbiO cobalt transport 99.3 5E-12 1.1E-16 110.5 6.7 141 9-164 1-171 (275)
200 COG0194 Gmk Guanylate kinase [ 99.3 9.6E-12 2.1E-16 100.0 7.7 175 47-246 3-181 (191)
201 cd03246 ABCC_Protease_Secretio 99.3 3.2E-12 6.9E-17 104.1 5.0 121 15-165 7-131 (173)
202 PRK13543 cytochrome c biogenes 99.3 1E-11 2.2E-16 104.6 8.2 139 9-165 11-172 (214)
203 cd03294 ABC_Pro_Gly_Bertaine T 99.3 6.5E-12 1.4E-16 109.5 7.3 137 13-164 29-194 (269)
204 cd03231 ABC_CcmA_heme_exporter 99.3 6.1E-12 1.3E-16 104.9 6.8 133 15-164 7-159 (201)
205 PRK14269 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 106.6 8.5 49 9-72 2-52 (246)
206 PRK13641 cbiO cobalt transport 99.3 4.6E-12 1E-16 111.4 6.3 142 9-165 2-180 (287)
207 cd03299 ABC_ModC_like Archeal 99.3 7.9E-12 1.7E-16 106.8 7.5 135 15-164 7-163 (235)
208 PRK13540 cytochrome c biogenes 99.3 5.8E-12 1.3E-16 104.9 6.4 139 9-164 1-161 (200)
209 PRK14242 phosphate transporter 99.3 1.1E-11 2.4E-16 106.9 8.2 48 10-72 7-56 (253)
210 COG4525 TauB ABC-type taurine 99.3 1.3E-11 2.9E-16 99.7 8.0 143 9-166 3-168 (259)
211 cd03229 ABC_Class3 This class 99.3 2E-12 4.4E-17 105.7 3.4 124 15-164 7-134 (178)
212 PRK11300 livG leucine/isoleuci 99.3 9.5E-12 2.1E-16 107.5 7.7 51 9-74 5-57 (255)
213 cd03216 ABC_Carb_Monos_I This 99.3 4.7E-12 1E-16 102.1 5.4 108 15-165 7-117 (163)
214 PRK13644 cbiO cobalt transport 99.3 2.6E-12 5.7E-17 112.2 4.2 140 9-164 1-170 (274)
215 TIGR02324 CP_lyasePhnL phospho 99.3 1.2E-11 2.6E-16 104.8 8.1 58 9-81 1-68 (224)
216 PRK13539 cytochrome c biogenes 99.3 5.6E-12 1.2E-16 105.6 6.0 137 9-164 2-161 (207)
217 TIGR01189 ccmA heme ABC export 99.3 6.2E-12 1.4E-16 104.6 6.2 131 15-164 7-161 (198)
218 TIGR03740 galliderm_ABC gallid 99.3 1.5E-11 3.2E-16 104.2 8.5 132 15-165 7-159 (223)
219 PRK14268 phosphate ABC transpo 99.3 9.3E-12 2E-16 107.8 7.4 142 9-165 12-189 (258)
220 COG4608 AppF ABC-type oligopep 99.3 1E-11 2.2E-16 105.7 7.4 125 9-164 4-143 (268)
221 PRK14273 phosphate ABC transpo 99.3 1.1E-11 2.4E-16 107.1 7.7 51 9-74 7-59 (254)
222 TIGR01360 aden_kin_iso1 adenyl 99.3 2.1E-11 4.6E-16 100.2 9.1 120 48-191 3-129 (188)
223 PRK12269 bifunctional cytidyla 99.3 3E-12 6.4E-17 126.1 4.6 93 150-249 190-283 (863)
224 PRK09700 D-allose transporter 99.3 1.6E-11 3.4E-16 116.4 9.4 142 8-164 4-179 (510)
225 PRK03731 aroL shikimate kinase 99.3 4.7E-11 1E-15 96.9 10.9 159 49-250 3-169 (171)
226 PRK14241 phosphate transporter 99.3 1.5E-11 3.2E-16 106.6 8.4 59 9-82 4-70 (258)
227 PRK10744 pstB phosphate transp 99.3 1.3E-11 2.8E-16 107.0 8.1 50 9-73 13-64 (260)
228 PRK11144 modC molybdate transp 99.3 1.4E-11 3.1E-16 111.2 8.7 158 9-182 1-192 (352)
229 PRK14251 phosphate ABC transpo 99.3 1.3E-11 2.9E-16 106.4 8.0 51 8-73 3-55 (251)
230 PRK14270 phosphate ABC transpo 99.3 1.5E-11 3.2E-16 106.1 8.3 51 8-73 3-55 (251)
231 PRK14259 phosphate ABC transpo 99.3 1.9E-11 4.1E-16 106.5 9.0 50 9-73 13-64 (269)
232 PRK13649 cbiO cobalt transport 99.3 9.4E-12 2E-16 109.1 7.1 141 10-165 3-180 (280)
233 cd03232 ABC_PDR_domain2 The pl 99.3 1E-11 2.2E-16 102.8 7.0 131 9-164 3-142 (192)
234 PRK14261 phosphate ABC transpo 99.3 1.9E-11 4.2E-16 105.5 8.9 53 6-73 3-57 (253)
235 TIGR03873 F420-0_ABC_ATP propo 99.3 1.4E-11 3.1E-16 106.5 8.1 137 15-166 8-173 (256)
236 PRK15079 oligopeptide ABC tran 99.3 9.9E-12 2.2E-16 111.3 7.3 140 9-164 8-195 (331)
237 PRK14235 phosphate transporter 99.3 2.1E-11 4.5E-16 106.2 9.1 142 9-165 19-198 (267)
238 TIGR02769 nickel_nikE nickel i 99.3 1.3E-11 2.7E-16 107.4 7.6 140 9-164 2-184 (265)
239 PRK13547 hmuV hemin importer A 99.3 1.6E-11 3.5E-16 107.1 8.3 51 9-74 1-53 (272)
240 PRK14274 phosphate ABC transpo 99.3 2.1E-11 4.5E-16 105.7 8.9 50 9-73 12-63 (259)
241 PF13207 AAA_17: AAA domain; P 99.3 5.7E-12 1.2E-16 96.2 4.8 109 50-193 1-114 (121)
242 PRK13640 cbiO cobalt transport 99.3 4.7E-12 1E-16 111.1 4.9 140 9-164 5-177 (282)
243 cd03247 ABCC_cytochrome_bd The 99.3 3.7E-12 7.9E-17 104.2 3.8 122 15-164 7-132 (178)
244 COG4152 ABC-type uncharacteriz 99.3 8.7E-12 1.9E-16 104.0 6.0 159 10-187 3-197 (300)
245 PRK13651 cobalt transporter AT 99.3 9.2E-12 2E-16 110.3 6.6 57 10-81 3-67 (305)
246 PRK14272 phosphate ABC transpo 99.3 1.6E-11 3.4E-16 106.0 7.9 51 9-74 4-56 (252)
247 PRK03839 putative kinase; Prov 99.3 8.1E-11 1.8E-15 96.4 11.7 100 50-190 2-101 (180)
248 cd03300 ABC_PotA_N PotA is an 99.3 1.8E-11 3.8E-16 104.4 8.1 137 15-166 7-166 (232)
249 PRK14271 phosphate ABC transpo 99.3 2E-11 4.2E-16 106.8 8.5 53 7-74 19-73 (276)
250 cd03223 ABCD_peroxisomal_ALDP 99.3 7.9E-12 1.7E-16 101.1 5.6 116 15-164 7-125 (166)
251 PRK13642 cbiO cobalt transport 99.2 4.9E-12 1.1E-16 110.7 4.6 137 9-164 4-174 (277)
252 PRK08154 anaerobic benzoate ca 99.2 5.1E-11 1.1E-15 105.8 11.1 160 44-246 129-300 (309)
253 PRK10253 iron-enterobactin tra 99.2 1.4E-11 3.1E-16 107.1 7.4 141 9-164 7-177 (265)
254 PRK10619 histidine/lysine/argi 99.2 2.1E-11 4.5E-16 105.6 8.3 59 9-82 5-66 (257)
255 PRK14253 phosphate ABC transpo 99.2 2.2E-11 4.7E-16 104.9 8.4 51 9-74 3-55 (249)
256 PRK13631 cbiO cobalt transport 99.2 1.5E-11 3.3E-16 109.6 7.6 59 9-82 21-87 (320)
257 PRK11022 dppD dipeptide transp 99.2 1.8E-11 3.9E-16 109.5 8.0 140 9-164 3-187 (326)
258 TIGR01277 thiQ thiamine ABC tr 99.2 2.4E-11 5.2E-16 102.2 8.3 134 15-164 7-162 (213)
259 PRK15056 manganese/iron transp 99.2 1.7E-11 3.7E-16 107.0 7.5 142 9-165 6-177 (272)
260 PRK03846 adenylylsulfate kinas 99.2 7.8E-11 1.7E-15 98.0 11.2 56 31-86 6-64 (198)
261 PRK13646 cbiO cobalt transport 99.2 1.1E-11 2.4E-16 109.0 6.3 140 10-164 3-179 (286)
262 COG4175 ProV ABC-type proline/ 99.2 1.1E-11 2.5E-16 106.9 6.1 146 23-184 44-230 (386)
263 PRK14258 phosphate ABC transpo 99.2 2.8E-11 6E-16 105.1 8.7 51 9-74 7-59 (261)
264 PRK14249 phosphate ABC transpo 99.2 3E-11 6.5E-16 104.2 8.8 62 7-83 2-71 (251)
265 TIGR03415 ABC_choXWV_ATP choli 99.2 1.8E-11 3.8E-16 111.3 7.6 153 15-182 31-228 (382)
266 PRK10938 putative molybdenum t 99.2 1.9E-11 4.2E-16 115.3 8.1 141 9-165 3-170 (490)
267 PRK14256 phosphate ABC transpo 99.2 2.9E-11 6.3E-16 104.3 8.6 50 9-73 4-55 (252)
268 PRK11308 dppF dipeptide transp 99.2 2.2E-11 4.8E-16 108.9 8.0 140 9-164 5-188 (327)
269 TIGR02142 modC_ABC molybdenum 99.2 2.5E-11 5.5E-16 109.8 8.5 153 12-182 3-195 (354)
270 PRK14262 phosphate ABC transpo 99.2 2.7E-11 5.9E-16 104.3 8.3 50 9-73 3-54 (250)
271 PRK14265 phosphate ABC transpo 99.2 2.3E-11 5E-16 106.3 7.8 142 9-165 20-196 (274)
272 cd03267 ABC_NatA_like Similar 99.2 2.1E-11 4.6E-16 104.2 7.4 135 16-165 29-188 (236)
273 PRK10419 nikE nickel transport 99.2 2.6E-11 5.7E-16 105.6 8.0 140 9-164 3-185 (268)
274 PRK14245 phosphate ABC transpo 99.2 3.5E-11 7.6E-16 103.7 8.6 142 9-165 3-181 (250)
275 TIGR02868 CydC thiol reductant 99.2 5.1E-12 1.1E-16 120.3 3.7 115 44-164 357-504 (529)
276 cd00227 CPT Chloramphenicol (C 99.2 1.9E-10 4.1E-15 93.8 12.4 40 47-87 1-40 (175)
277 TIGR01978 sufC FeS assembly AT 99.2 2.7E-11 5.8E-16 103.9 7.7 53 15-82 7-63 (243)
278 TIGR02322 phosphon_PhnN phosph 99.2 3.4E-10 7.4E-15 92.5 13.9 86 147-249 88-176 (179)
279 TIGR02633 xylG D-xylose ABC tr 99.2 2.7E-11 5.9E-16 114.6 8.4 140 10-164 2-175 (500)
280 PRK14248 phosphate ABC transpo 99.2 3.3E-11 7.1E-16 105.0 8.1 49 9-72 21-71 (268)
281 PRK13545 tagH teichoic acids e 99.2 1.7E-11 3.7E-16 114.2 6.7 137 9-164 21-177 (549)
282 PRK14254 phosphate ABC transpo 99.2 3.7E-11 8E-16 105.6 8.5 141 9-164 39-214 (285)
283 PRK11701 phnK phosphonate C-P 99.2 2.9E-11 6.3E-16 104.7 7.7 141 9-165 6-186 (258)
284 COG4559 ABC-type hemin transpo 99.2 2.3E-11 5.1E-16 99.5 6.6 140 9-163 1-174 (259)
285 TIGR02770 nickel_nikD nickel i 99.2 2.6E-11 5.6E-16 103.3 7.2 125 22-164 1-159 (230)
286 PRK11174 cysteine/glutathione 99.2 1.5E-11 3.3E-16 118.5 6.5 123 21-164 364-519 (588)
287 PRK13541 cytochrome c biogenes 99.2 1.9E-11 4E-16 101.5 6.1 135 10-164 2-157 (195)
288 PRK14246 phosphate ABC transpo 99.2 5.6E-11 1.2E-15 102.9 9.2 55 5-74 6-62 (257)
289 PRK11176 lipid transporter ATP 99.2 2.3E-11 5E-16 117.1 7.4 137 23-164 344-514 (582)
290 TIGR03005 ectoine_ehuA ectoine 99.2 3E-11 6.6E-16 104.2 7.5 53 15-82 7-61 (252)
291 PRK14237 phosphate transporter 99.2 3.7E-11 8.1E-16 104.6 8.1 52 7-73 18-71 (267)
292 PRK14240 phosphate transporter 99.2 3.5E-11 7.7E-16 103.7 7.8 50 9-73 3-54 (250)
293 cd03250 ABCC_MRP_domain1 Domai 99.2 1.7E-11 3.7E-16 102.4 5.6 128 15-164 7-161 (204)
294 cd00464 SK Shikimate kinase (S 99.2 6.9E-11 1.5E-15 94.0 8.9 145 51-234 2-151 (154)
295 PRK14236 phosphate transporter 99.2 4.5E-11 9.7E-16 104.4 8.3 59 9-82 25-91 (272)
296 cd03244 ABCC_MRP_domain2 Domai 99.2 1.9E-11 4.1E-16 103.3 5.8 45 15-74 9-56 (221)
297 cd03245 ABCC_bacteriocin_expor 99.2 1.6E-11 3.5E-16 103.7 5.2 45 15-74 9-56 (220)
298 PRK15134 microcin C ABC transp 99.2 3.6E-11 7.9E-16 114.4 8.1 140 9-164 5-190 (529)
299 cd03214 ABC_Iron-Siderophores_ 99.2 1.1E-11 2.3E-16 101.6 3.9 122 15-164 6-131 (180)
300 PLN02200 adenylate kinase fami 99.2 1.1E-10 2.5E-15 99.4 10.2 124 44-191 39-168 (234)
301 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 1.6E-11 3.6E-16 120.3 5.8 136 22-164 453-622 (686)
302 PRK13645 cbiO cobalt transport 99.2 2.3E-11 4.9E-16 107.1 6.1 58 10-82 7-72 (289)
303 PRK11288 araG L-arabinose tran 99.2 3.9E-11 8.5E-16 113.5 8.2 140 9-164 4-174 (501)
304 cd03217 ABC_FeS_Assembly ABC-t 99.2 1.3E-11 2.8E-16 102.9 4.4 127 15-164 7-138 (200)
305 PLN02199 shikimate kinase 99.2 1.8E-10 3.8E-15 99.9 11.5 169 46-253 100-294 (303)
306 PRK14239 phosphate transporter 99.2 6.2E-11 1.3E-15 102.2 8.7 49 9-72 5-55 (252)
307 PF01583 APS_kinase: Adenylyls 99.2 3.5E-11 7.6E-16 95.4 6.5 108 47-185 1-116 (156)
308 TIGR03269 met_CoM_red_A2 methy 99.2 4.5E-11 9.7E-16 113.6 8.4 46 12-72 3-50 (520)
309 COG3845 ABC-type uncharacteriz 99.2 9.9E-11 2.1E-15 106.5 10.1 161 8-184 3-205 (501)
310 PRK14255 phosphate ABC transpo 99.2 4.8E-11 1E-15 103.0 7.8 49 9-72 5-55 (252)
311 PRK14243 phosphate transporter 99.2 7.8E-11 1.7E-15 102.4 9.1 50 9-73 10-61 (264)
312 cd03213 ABCG_EPDR ABCG transpo 99.2 1.6E-11 3.6E-16 101.8 4.7 126 15-164 10-145 (194)
313 cd03248 ABCC_TAP TAP, the Tran 99.2 1.2E-11 2.6E-16 105.0 3.9 62 6-82 8-75 (226)
314 PRK14260 phosphate ABC transpo 99.2 6.5E-11 1.4E-15 102.6 8.5 50 9-73 7-58 (259)
315 PRK14238 phosphate transporter 99.2 5.8E-11 1.3E-15 103.6 8.2 50 9-73 24-75 (271)
316 PRK13657 cyclic beta-1,2-gluca 99.2 2.3E-11 5E-16 117.2 6.1 115 44-164 357-505 (588)
317 COG1123 ATPase components of v 99.2 6.4E-11 1.4E-15 110.1 8.7 127 22-165 306-464 (539)
318 PRK00698 tmk thymidylate kinas 99.2 2.2E-10 4.7E-15 95.5 11.1 28 47-74 2-29 (205)
319 COG4988 CydD ABC-type transpor 99.2 2.2E-11 4.7E-16 113.0 5.4 129 15-164 327-490 (559)
320 cd03251 ABCC_MsbA MsbA is an e 99.2 1.9E-11 4.2E-16 104.2 4.7 53 15-82 7-63 (234)
321 PRK14263 phosphate ABC transpo 99.2 8E-11 1.7E-15 102.2 8.5 141 10-165 9-184 (261)
322 PRK09580 sufC cysteine desulfu 99.2 3.2E-11 7E-16 103.7 6.0 59 9-82 1-64 (248)
323 TIGR02203 MsbA_lipidA lipid A 99.2 2.4E-11 5.3E-16 116.7 5.8 137 23-164 333-503 (571)
324 PRK15064 ABC transporter ATP-b 99.2 8.4E-11 1.8E-15 112.0 9.3 137 9-165 319-473 (530)
325 PRK11819 putative ABC transpor 99.2 8.8E-11 1.9E-15 112.4 9.4 141 9-166 324-481 (556)
326 PRK10982 galactose/methyl gala 99.2 8.4E-11 1.8E-15 111.0 9.2 134 15-164 5-168 (491)
327 TIGR00455 apsK adenylylsulfate 99.2 3.7E-10 7.9E-15 92.8 11.9 53 34-86 4-58 (184)
328 cd03369 ABCC_NFT1 Domain 2 of 99.2 5.2E-11 1.1E-15 99.7 6.8 128 10-164 7-159 (207)
329 COG1119 ModF ABC-type molybden 99.2 2.3E-11 5E-16 101.7 4.5 167 6-187 28-241 (257)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 99.2 8.9E-11 1.9E-15 112.3 9.2 140 9-165 322-478 (552)
331 PRK14266 phosphate ABC transpo 99.2 1.2E-10 2.5E-15 100.5 8.9 49 9-72 3-53 (250)
332 PRK15093 antimicrobial peptide 99.2 8.2E-11 1.8E-15 105.4 8.3 140 9-164 3-192 (330)
333 PRK11147 ABC transporter ATPas 99.2 9E-11 1.9E-15 114.0 9.1 156 9-181 319-499 (635)
334 KOG0058 Peptide exporter, ABC 99.2 2.1E-11 4.5E-16 115.4 4.5 135 23-163 468-637 (716)
335 PRK14275 phosphate ABC transpo 99.2 8.5E-11 1.8E-15 103.4 8.0 49 9-72 39-89 (286)
336 cd03254 ABCC_Glucan_exporter_l 99.2 2.8E-11 6E-16 102.9 4.8 56 12-82 5-64 (229)
337 TIGR01313 therm_gnt_kin carboh 99.2 1.8E-09 3.9E-14 86.9 15.1 34 51-87 1-34 (163)
338 TIGR02857 CydD thiol reductant 99.2 3E-11 6.4E-16 115.1 5.4 137 22-164 322-492 (529)
339 PRK11819 putative ABC transpor 99.2 1E-10 2.2E-15 112.0 9.1 158 9-181 6-222 (556)
340 TIGR00958 3a01208 Conjugate Tr 99.2 1.8E-11 4E-16 120.3 4.1 115 44-164 503-651 (711)
341 TIGR02323 CP_lyasePhnK phospho 99.2 8.5E-11 1.8E-15 101.5 7.7 59 9-82 3-64 (253)
342 PRK09700 D-allose transporter 99.2 8.8E-11 1.9E-15 111.4 8.4 140 9-164 265-443 (510)
343 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 2.9E-11 6.3E-16 119.0 5.4 136 23-164 480-649 (710)
344 cd03289 ABCC_CFTR2 The CFTR su 99.2 3.8E-11 8.3E-16 104.8 5.5 137 12-164 5-172 (275)
345 PRK09473 oppD oligopeptide tra 99.2 7.5E-11 1.6E-15 105.6 7.4 159 8-182 11-225 (330)
346 PRK13409 putative ATPase RIL; 99.2 8.7E-11 1.9E-15 112.7 8.2 136 9-164 340-487 (590)
347 PRK14530 adenylate kinase; Pro 99.2 3.1E-10 6.7E-15 95.7 10.7 37 48-87 3-39 (215)
348 cd03233 ABC_PDR_domain1 The pl 99.2 3.8E-11 8.2E-16 100.2 5.0 134 15-165 10-153 (202)
349 PRK15064 ABC transporter ATP-b 99.2 8.5E-11 1.8E-15 112.0 8.1 143 9-166 1-191 (530)
350 PRK11160 cysteine/glutathione 99.1 6.6E-11 1.4E-15 113.7 7.4 115 44-164 362-509 (574)
351 COG1137 YhbG ABC-type (unclass 99.1 2.3E-12 4.9E-17 104.5 -2.3 140 9-163 4-172 (243)
352 TIGR01359 UMP_CMP_kin_fam UMP- 99.1 3E-10 6.4E-15 93.1 10.2 35 50-87 1-35 (183)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 4.3E-11 9.3E-16 94.5 4.9 97 15-165 7-105 (144)
354 TIGR00954 3a01203 Peroxysomal 99.1 6E-11 1.3E-15 115.6 7.0 141 9-164 451-616 (659)
355 TIGR02982 heterocyst_DevA ABC 99.1 3.6E-11 7.7E-16 101.7 4.8 132 15-164 8-175 (220)
356 COG4148 ModC ABC-type molybdat 99.1 8.3E-11 1.8E-15 100.0 6.9 160 13-189 5-198 (352)
357 cd03234 ABCG_White The White s 99.1 6.9E-11 1.5E-15 100.3 6.5 135 15-164 10-177 (226)
358 cd03252 ABCC_Hemolysin The ABC 99.1 2.9E-11 6.2E-16 103.4 4.1 45 15-74 7-54 (237)
359 PRK10261 glutathione transport 99.1 9.6E-11 2.1E-15 113.5 8.2 158 9-182 313-527 (623)
360 TIGR03375 type_I_sec_LssB type 99.1 3.7E-11 7.9E-16 118.0 5.3 136 23-164 466-635 (694)
361 PRK14244 phosphate ABC transpo 99.1 1.7E-10 3.6E-15 99.5 8.6 44 15-73 12-56 (251)
362 PRK10938 putative molybdenum t 99.1 8.5E-11 1.9E-15 110.9 7.3 142 9-165 260-436 (490)
363 TIGR01193 bacteriocin_ABC ABC- 99.1 4.1E-11 8.8E-16 117.9 5.3 116 44-164 496-645 (708)
364 PRK14252 phosphate ABC transpo 99.1 1.8E-10 3.9E-15 100.1 8.6 52 7-73 14-67 (265)
365 PRK10261 glutathione transport 99.1 1.3E-10 2.8E-15 112.6 8.3 51 9-74 12-68 (623)
366 COG4674 Uncharacterized ABC-ty 99.1 1.1E-10 2.4E-15 94.5 6.4 137 11-162 7-179 (249)
367 TIGR01257 rim_protein retinal- 99.1 8.2E-11 1.8E-15 124.6 7.2 144 8-166 1936-2106(2272)
368 PRK10522 multidrug transporter 99.1 5E-11 1.1E-15 114.0 5.0 120 44-164 345-483 (547)
369 PRK10790 putative multidrug tr 99.1 6.1E-11 1.3E-15 114.4 5.6 114 44-164 363-510 (592)
370 TIGR02204 MsbA_rel ABC transpo 99.1 9.3E-11 2E-15 112.8 6.8 115 44-164 362-510 (576)
371 COG4615 PvdE ABC-type sideroph 99.1 2.8E-10 6.1E-15 101.0 9.0 144 21-180 337-509 (546)
372 PRK14264 phosphate ABC transpo 99.1 2.4E-10 5.2E-15 101.4 8.7 53 6-73 42-96 (305)
373 cd03237 ABC_RNaseL_inhibitor_d 99.1 2E-10 4.4E-15 98.7 8.0 118 44-165 21-150 (246)
374 PRK13549 xylose transporter AT 99.1 1.8E-10 3.9E-15 109.2 8.2 141 9-164 259-439 (506)
375 TIGR01184 ntrCD nitrate transp 99.1 1.6E-10 3.4E-15 98.5 7.0 125 23-164 1-148 (230)
376 PRK15134 microcin C ABC transp 99.1 1.8E-10 4E-15 109.7 8.2 139 9-164 275-459 (529)
377 COG1936 Predicted nucleotide k 99.1 3.6E-10 7.7E-15 89.8 8.4 149 49-250 1-155 (180)
378 COG4598 HisP ABC-type histidin 99.1 2E-10 4.4E-15 91.8 7.0 143 9-166 6-188 (256)
379 CHL00131 ycf16 sulfate ABC tra 99.1 3.2E-10 7E-15 97.8 8.9 48 9-71 7-56 (252)
380 PRK11147 ABC transporter ATPas 99.1 5.5E-11 1.2E-15 115.5 4.5 58 9-81 3-63 (635)
381 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 5.1E-11 1.1E-15 101.9 3.8 53 15-82 7-64 (238)
382 PRK10636 putative ABC transpor 99.1 2E-10 4.3E-15 111.6 8.2 141 9-164 1-183 (638)
383 PRK14021 bifunctional shikimat 99.1 2.9E-10 6.3E-15 108.1 9.2 162 46-246 4-175 (542)
384 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 2.4E-10 5.3E-15 109.3 8.7 142 8-164 3-195 (552)
385 COG1132 MdlB ABC-type multidru 99.1 5E-11 1.1E-15 114.4 4.0 134 10-164 329-499 (567)
386 PRK10636 putative ABC transpor 99.1 1.9E-10 4.1E-15 111.7 7.9 152 9-181 312-489 (638)
387 TIGR02633 xylG D-xylose ABC tr 99.1 1.5E-10 3.2E-15 109.6 6.9 142 9-165 257-438 (500)
388 PRK14257 phosphate ABC transpo 99.1 2.4E-10 5.3E-15 102.2 7.9 139 9-165 80-260 (329)
389 TIGR01842 type_I_sec_PrtD type 99.1 7.3E-11 1.6E-15 112.8 4.6 115 44-164 340-488 (544)
390 KOG3354 Gluconate kinase [Carb 99.1 2.1E-09 4.5E-14 83.7 11.7 57 48-110 12-69 (191)
391 PRK14531 adenylate kinase; Pro 99.1 7.2E-10 1.6E-14 91.1 9.8 37 48-87 2-38 (183)
392 cd03253 ABCC_ATM1_transporter 99.1 7.4E-11 1.6E-15 100.7 4.0 52 15-81 7-61 (236)
393 cd03288 ABCC_SUR2 The SUR doma 99.1 1.3E-10 2.9E-15 100.5 5.6 58 10-82 20-82 (257)
394 PRK03695 vitamin B12-transport 99.1 3.4E-10 7.3E-15 97.5 7.9 46 22-82 11-56 (248)
395 TIGR03269 met_CoM_red_A2 methy 99.1 2.7E-10 6E-15 108.2 8.0 142 9-165 279-462 (520)
396 PRK13546 teichoic acids export 99.1 2.7E-10 5.9E-15 98.9 7.2 125 21-164 38-177 (264)
397 cd01672 TMPK Thymidine monopho 99.1 2E-09 4.4E-14 88.9 11.9 31 49-79 1-31 (200)
398 KOG0057 Mitochondrial Fe/S clu 99.1 3.2E-10 6.8E-15 104.3 7.4 130 15-164 358-521 (591)
399 TIGR01194 cyc_pep_trnsptr cycl 99.1 1.8E-10 3.9E-15 110.3 6.2 120 44-164 364-504 (555)
400 PRK00889 adenylylsulfate kinas 99.1 5.2E-10 1.1E-14 91.2 7.9 41 46-86 2-44 (175)
401 COG4133 CcmA ABC-type transpor 99.1 3.1E-10 6.8E-15 91.3 6.4 140 9-166 2-166 (209)
402 PRK14527 adenylate kinase; Pro 99.1 8.8E-10 1.9E-14 91.1 9.3 39 45-86 3-41 (191)
403 KOG0055 Multidrug/pheromone ex 99.1 5.3E-11 1.2E-15 118.7 2.3 115 44-164 375-523 (1228)
404 TIGR01192 chvA glucan exporter 99.1 1.4E-10 3E-15 111.7 5.0 115 44-164 357-505 (585)
405 COG4987 CydC ABC-type transpor 99.1 8.1E-11 1.8E-15 108.0 3.0 141 22-164 338-508 (573)
406 PRK14532 adenylate kinase; Pro 99.0 1.2E-09 2.6E-14 90.0 9.7 36 50-88 2-37 (188)
407 PRK13808 adenylate kinase; Pro 99.0 9.4E-10 2E-14 97.5 9.5 35 50-87 2-36 (333)
408 cd03290 ABCC_SUR1_N The SUR do 99.0 3.4E-10 7.3E-15 95.6 6.4 54 14-82 6-62 (218)
409 cd03222 ABC_RNaseL_inhibitor T 99.0 2.7E-10 5.7E-15 93.0 5.5 99 14-165 6-106 (177)
410 PRK15177 Vi polysaccharide exp 99.0 1.8E-10 3.9E-15 97.0 4.5 124 22-164 2-138 (213)
411 PLN03211 ABC transporter G-25; 99.0 7.5E-10 1.6E-14 107.7 9.3 134 15-164 75-240 (659)
412 PLN03130 ABC transporter C fam 99.0 9E-11 1.9E-15 123.7 3.1 136 22-164 1239-1408(1622)
413 cd02030 NDUO42 NADH:Ubiquinone 99.0 1.3E-09 2.7E-14 92.2 9.5 75 168-247 142-217 (219)
414 cd02021 GntK Gluconate kinase 99.0 4.5E-09 9.7E-14 83.3 12.2 36 50-88 1-36 (150)
415 TIGR01257 rim_protein retinal- 99.0 4.2E-10 9.2E-15 119.3 8.0 143 9-166 928-1097(2272)
416 TIGR03263 guanyl_kin guanylate 99.0 1.5E-09 3.2E-14 88.7 9.6 26 48-73 1-26 (180)
417 COG4136 ABC-type uncharacteriz 99.0 2.1E-10 4.5E-15 89.2 3.9 135 15-169 9-173 (213)
418 PRK10789 putative multidrug tr 99.0 2E-10 4.3E-15 110.3 4.7 116 44-165 337-486 (569)
419 COG4181 Predicted ABC-type tra 99.0 1.6E-09 3.6E-14 86.0 8.9 128 21-164 24-180 (228)
420 PRK10535 macrolide transporter 99.0 3.4E-10 7.3E-15 110.2 6.2 141 8-164 3-178 (648)
421 PF01202 SKI: Shikimate kinase 99.0 6.1E-10 1.3E-14 89.3 6.6 146 57-245 1-157 (158)
422 PF00005 ABC_tran: ABC transpo 99.0 1.9E-11 4.1E-16 95.4 -2.2 121 23-159 1-137 (137)
423 PLN03232 ABC transporter C fam 99.0 1.3E-10 2.8E-15 122.2 3.0 135 23-164 1237-1405(1495)
424 PRK14528 adenylate kinase; Pro 99.0 2.7E-09 5.9E-14 87.9 10.3 35 49-86 2-36 (186)
425 PRK09825 idnK D-gluconate kina 99.0 4.2E-08 9.1E-13 80.0 17.1 38 47-87 2-39 (176)
426 PRK05416 glmZ(sRNA)-inactivati 99.0 1E-08 2.2E-13 89.8 14.2 25 46-70 4-28 (288)
427 PLN03073 ABC transporter F fam 99.0 1.1E-09 2.4E-14 107.2 9.0 136 9-164 508-661 (718)
428 cd03291 ABCC_CFTR1 The CFTR su 99.0 2.3E-10 5E-15 100.2 3.8 127 19-164 49-193 (282)
429 TIGR00041 DTMP_kinase thymidyl 99.0 1.1E-08 2.4E-13 84.7 13.6 29 48-76 3-31 (195)
430 cd00267 ABC_ATPase ABC (ATP-bi 99.0 8.5E-10 1.8E-14 88.3 6.7 107 15-164 6-114 (157)
431 TIGR01846 type_I_sec_HlyB type 99.0 2.1E-10 4.6E-15 112.6 3.5 136 23-164 458-627 (694)
432 smart00072 GuKc Guanylate kina 99.0 5.8E-09 1.2E-13 85.8 11.1 172 48-245 2-180 (184)
433 COG4172 ABC-type uncharacteriz 99.0 8.7E-10 1.9E-14 98.2 6.4 128 22-165 302-461 (534)
434 cd02019 NK Nucleoside/nucleoti 99.0 1.7E-09 3.7E-14 74.3 6.5 23 50-72 1-23 (69)
435 COG4107 PhnK ABC-type phosphon 99.0 1E-09 2.2E-14 87.4 5.9 139 10-163 7-184 (258)
436 PF13238 AAA_18: AAA domain; P 99.0 2.8E-10 6.1E-15 87.3 2.7 110 51-191 1-114 (129)
437 PRK13973 thymidylate kinase; P 99.0 1.2E-08 2.5E-13 85.9 12.7 34 48-81 3-36 (213)
438 COG1123 ATPase components of v 99.0 2E-09 4.3E-14 100.3 8.5 160 9-184 5-220 (539)
439 PRK15439 autoinducer 2 ABC tra 99.0 1.8E-09 3.9E-14 102.4 8.4 129 22-165 278-438 (510)
440 cd03238 ABC_UvrA The excision 99.0 1.8E-09 3.8E-14 88.0 7.1 110 21-165 9-124 (176)
441 PTZ00265 multidrug resistance 99.0 4.6E-10 9.9E-15 117.5 4.5 54 21-74 1166-1220(1466)
442 COG0444 DppD ABC-type dipeptid 99.0 1.9E-09 4E-14 93.9 7.5 133 15-163 8-186 (316)
443 PRK11288 araG L-arabinose tran 98.9 1.4E-09 3.1E-14 102.9 7.2 129 22-165 268-431 (501)
444 COG4586 ABC-type uncharacteriz 98.9 5.5E-10 1.2E-14 94.8 3.9 127 22-163 39-189 (325)
445 KOG0055 Multidrug/pheromone ex 98.9 6.2E-10 1.4E-14 111.2 4.9 176 21-231 988-1200(1228)
446 TIGR03771 anch_rpt_ABC anchore 98.9 3.4E-09 7.4E-14 89.8 8.7 121 44-164 2-147 (223)
447 COG0488 Uup ATPase components 98.9 1.4E-09 3E-14 102.5 6.8 157 9-180 3-211 (530)
448 TIGR00957 MRP_assoc_pro multi 98.9 4.9E-10 1.1E-14 118.0 4.1 135 23-164 1287-1455(1522)
449 PLN03130 ABC transporter C fam 98.9 1.3E-09 2.8E-14 115.2 7.1 115 44-165 639-775 (1622)
450 cd03236 ABC_RNaseL_inhibitor_d 98.9 2.3E-09 4.9E-14 92.7 7.4 48 11-74 3-52 (255)
451 PRK00279 adk adenylate kinase; 98.9 8.3E-09 1.8E-13 86.9 10.7 35 50-87 2-36 (215)
452 PRK00300 gmk guanylate kinase; 98.9 4.8E-09 1E-13 87.5 9.1 28 46-73 3-30 (205)
453 PRK13975 thymidylate kinase; P 98.9 2.4E-08 5.2E-13 82.7 13.0 26 48-73 2-27 (196)
454 COG4167 SapF ABC-type antimicr 98.9 2.6E-09 5.6E-14 85.8 6.7 129 22-166 28-185 (267)
455 PRK10982 galactose/methyl gala 98.9 2.2E-09 4.8E-14 101.4 7.5 141 9-165 250-426 (491)
456 PRK10762 D-ribose transporter 98.9 2.5E-09 5.5E-14 101.2 7.7 129 22-165 267-430 (501)
457 PRK02496 adk adenylate kinase; 98.9 7.1E-09 1.5E-13 85.1 9.4 35 49-86 2-36 (184)
458 PLN03073 ABC transporter F fam 98.9 1.7E-09 3.8E-14 105.9 6.6 51 6-71 174-226 (718)
459 PLN03232 ABC transporter C fam 98.9 7.6E-10 1.6E-14 116.5 4.2 115 44-165 639-775 (1495)
460 TIGR01351 adk adenylate kinase 98.9 1E-08 2.2E-13 86.0 10.1 115 51-190 2-125 (210)
461 PF03668 ATP_bind_2: P-loop AT 98.9 2.7E-08 5.9E-13 85.8 12.8 59 171-238 84-146 (284)
462 COG0396 sufC Cysteine desulfur 98.9 2.2E-09 4.8E-14 89.0 5.7 134 15-164 10-178 (251)
463 PTZ00088 adenylate kinase 1; P 98.9 1.1E-08 2.3E-13 86.9 10.0 40 45-87 3-42 (229)
464 KOG2878 Predicted kinase [Gene 98.9 4E-09 8.6E-14 85.6 6.9 114 48-163 31-166 (282)
465 KOG0056 Heavy metal exporter H 98.9 7.3E-10 1.6E-14 100.8 2.9 118 44-162 560-706 (790)
466 COG0488 Uup ATPase components 98.9 3.9E-09 8.5E-14 99.5 7.8 159 9-189 321-505 (530)
467 PF00625 Guanylate_kin: Guanyl 98.9 2.7E-09 6E-14 87.6 6.0 27 47-73 1-27 (183)
468 PRK05537 bifunctional sulfate 98.9 2.4E-08 5.2E-13 95.3 12.6 43 44-86 388-433 (568)
469 TIGR01271 CFTR_protein cystic 98.9 2.3E-09 4.9E-14 112.8 6.1 135 23-164 1220-1387(1490)
470 PRK14738 gmk guanylate kinase; 98.9 1.4E-08 3.1E-13 84.9 9.8 28 44-71 9-36 (206)
471 TIGR03574 selen_PSTK L-seryl-t 98.9 1.4E-08 3.1E-13 87.4 10.0 156 50-249 1-167 (249)
472 PTZ00265 multidrug resistance 98.9 2.8E-09 6.1E-14 111.6 6.4 37 44-80 407-444 (1466)
473 PTZ00243 ABC transporter; Prov 98.9 2.5E-09 5.5E-14 112.7 5.8 135 23-164 1311-1480(1560)
474 COG1101 PhnK ABC-type uncharac 98.9 4.1E-09 8.9E-14 86.7 5.6 141 9-165 1-183 (263)
475 COG3265 GntK Gluconate kinase 98.9 1.2E-07 2.6E-12 73.5 13.4 151 54-249 1-157 (161)
476 COG0563 Adk Adenylate kinase a 98.8 2.7E-08 5.8E-13 81.2 10.2 36 50-88 2-37 (178)
477 COG4618 ArpD ABC-type protease 98.8 4.9E-09 1.1E-13 95.9 6.3 50 21-85 350-400 (580)
478 KOG3079 Uridylate kinase/adeny 98.8 1.4E-08 3.1E-13 81.4 8.1 127 44-192 4-136 (195)
479 cd01428 ADK Adenylate kinase ( 98.8 3.1E-08 6.8E-13 81.7 10.0 34 51-87 2-35 (194)
480 PLN02674 adenylate kinase 98.8 1.7E-08 3.7E-13 86.1 8.5 39 46-87 29-67 (244)
481 PRK14526 adenylate kinase; Pro 98.8 3.5E-08 7.7E-13 82.7 10.2 35 50-87 2-36 (211)
482 PF13671 AAA_33: AAA domain; P 98.8 5.9E-09 1.3E-13 81.7 5.1 34 50-86 1-34 (143)
483 KOG0061 Transporter, ABC super 98.8 1.1E-08 2.3E-13 98.7 7.9 128 21-164 44-204 (613)
484 TIGR00957 MRP_assoc_pro multi 98.8 5.9E-09 1.3E-13 110.0 6.2 133 10-164 637-794 (1522)
485 PLN03140 ABC transporter G fam 98.8 3.6E-08 7.8E-13 103.2 11.0 135 15-164 173-370 (1470)
486 TIGR00955 3a01204 The Eye Pigm 98.8 1.2E-08 2.6E-13 99.0 7.0 128 21-164 39-200 (617)
487 PRK11545 gntK gluconate kinase 98.8 3.3E-07 7.1E-12 73.8 14.3 30 54-86 1-30 (163)
488 PRK13951 bifunctional shikimat 98.8 2.7E-08 5.9E-13 93.4 9.1 34 50-86 2-35 (488)
489 PHA02530 pseT polynucleotide k 98.8 2.8E-08 6E-13 87.9 8.7 37 48-86 2-38 (300)
490 PRK13409 putative ATPase RIL; 98.8 3E-09 6.4E-14 102.3 2.5 49 10-74 75-125 (590)
491 TIGR00956 3a01205 Pleiotropic 98.8 1E-08 2.2E-13 107.3 6.5 139 10-164 760-936 (1394)
492 PLN02459 probable adenylate ki 98.7 8.5E-08 1.8E-12 82.4 10.5 38 47-87 28-65 (261)
493 COG0125 Tmk Thymidylate kinase 98.7 3.1E-07 6.7E-12 76.6 13.6 31 47-77 2-32 (208)
494 COG5265 ATM1 ABC-type transpor 98.7 3.4E-09 7.5E-14 94.9 1.8 146 44-206 285-459 (497)
495 TIGR01271 CFTR_protein cystic 98.7 9.9E-09 2.2E-13 108.1 5.1 127 21-164 440-582 (1490)
496 PF07931 CPT: Chloramphenicol 98.7 3E-08 6.6E-13 80.3 6.7 165 48-248 1-172 (174)
497 COG4088 Predicted nucleotide k 98.7 1.2E-07 2.6E-12 77.5 9.7 36 48-83 1-36 (261)
498 PRK12338 hypothetical protein; 98.7 1.1E-07 2.3E-12 84.0 10.2 37 47-86 3-39 (319)
499 KOG0054 Multidrug resistance-a 98.7 7.7E-09 1.7E-13 105.6 3.5 153 15-205 1145-1334(1381)
500 COG4178 ABC-type uncharacteriz 98.7 3.9E-08 8.5E-13 92.9 7.9 118 44-165 415-550 (604)
No 1
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.5e-37 Score=252.60 Aligned_cols=207 Identities=46% Similarity=0.860 Sum_probs=191.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
.+..+|||+|+|||||||+|+.|...|+...+.++++|+||+..........+.++|++|.+||++.+.+.|..++.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 56799999999999999999999999987788999999999887777777788999999999999999999999999999
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHH
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (278)
+..|.|++.++.+.. ....+.+.+++|+||.+++.|+.+++.+|++|||+++.++|+.|+++||...+|++++.++++|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999864 3556788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhccCc
Q 023731 206 SKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (278)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~~~~ 253 (278)
...++|+|+.||+|+++.||++|+.++.+..+++.+...|...+.++.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~~~~ 212 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLSEQN 212 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHHhhhhc
Confidence 999999999999999999999999998888888888888887655543
No 2
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=4.4e-33 Score=232.57 Aligned_cols=202 Identities=32% Similarity=0.616 Sum_probs=176.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC----CCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~----~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
-++|||+|+|||||||||+.|.+.+. +..+.++++|+||+.....+....+.+.|++|.++|++.+.+.|..+..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 37999999999999999999987762 23356899999996554333333456789999999999999999999999
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHH
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 203 (278)
+.+..|.|++....+.. ....+.+.+++|+||.++++++.+.+.+|+.|||+++.++++.|+.+|+...+|.+.+...+
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999887753 34566778999999999988899999999999999999999999999998888999999999
Q ss_pred HHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
+|.....|.+..|+.|++..||+||+++++++.+++.+..+|...++
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE 208 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHcc
Confidence 99998999999999999999999999999998999999888887664
No 3
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.97 E-value=4e-30 Score=215.97 Aligned_cols=205 Identities=45% Similarity=0.831 Sum_probs=176.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
..++.+|+|+|+||||||||++.|++.++...+.++++|+|+...............|++|..++++.+.+.|..+..+.
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999996556889999999865433233333455678889999999999999999998
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHH
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 204 (278)
.+..|.|+...+.+... .....+.+++|+||++++..+.+.+.+|++|||+++.+++++|+++|+...+|.+.++....
T Consensus 83 ~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~ 161 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQ 161 (209)
T ss_pred ccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHH
Confidence 89999999988876432 33456778999999999976788899999999999999999999999977788899999999
Q ss_pred HhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
|.....|.|..++.+.+..||++|+|+++++.+++.+.++|...+.
T Consensus 162 ~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 162 YLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 9898899999999999999999999998888899999999987754
No 4
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.97 E-value=3.8e-30 Score=213.69 Aligned_cols=184 Identities=39% Similarity=0.743 Sum_probs=153.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCC------EEEEcCCCCCCCCCHHHHHH--ccccCCCCCCcccHHHHHHHHHHhh
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQR------VVLVNQDSFYHNLTEQELAR--VHEYNFDHPDAFDTEKLLSSMEKLR 121 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~------~~~i~~D~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~l~~~~ 121 (278)
+|+|+|++||||||+|+.|+..|+..+ ..+++.|.|+.......... ...+.|.+|.++|++.+.+.|..+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999997433 56888898885443333222 2356788899999999999999999
Q ss_pred cCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHH
Q 023731 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (278)
Q Consensus 122 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~ 201 (278)
.++.+..|.|++....+.. ......+.+++|+||.++++++.+++.+|++|||+++.++++.|+++|+...+|.+.+++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999887754 233456789999999999988889999999999999999999999999988899999999
Q ss_pred HHHHhhccccccccccccccccccEEeeCCCCcH
Q 023731 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (278)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~ 235 (278)
.++|. .++|.|..|+.|++..||++|++..++.
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~~ 192 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPSGPTND 192 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEESCTSSH
T ss_pred EEEee-cCChhhhhheeccccccEEEECCCCCcc
Confidence 99988 8999999999999999999999987663
No 5
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.96 E-value=1.4e-28 Score=206.36 Aligned_cols=204 Identities=44% Similarity=0.824 Sum_probs=174.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
.+++.+|+|+|++|||||||++.|++.+....+.++++|+|+.............+.|+.+..++.+.+.+.+..+..+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999999986556789999999855433333344566788889999999999999999999
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHH
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 204 (278)
.+..|.|++....+.. ....+.+.+++|+||.++++++.+.+.+|++|||+++.+.++.|+++|+...++.+.+....+
T Consensus 83 ~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 9999999988776632 234556788999999999877788899999999999999999999999877788889988899
Q ss_pred HhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 205 YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
|.....+.|..++.+.+..||+||+++++++..+..+...|+..+
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKHLL 206 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHHhh
Confidence 888889999999999999999999999998889998888887653
No 6
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.96 E-value=2.6e-28 Score=203.26 Aligned_cols=196 Identities=58% Similarity=0.989 Sum_probs=168.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~ 129 (278)
+|+|+|++||||||+++.|++.+....+.++++|+|++.+............+..|..++++.+.+.+..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999998555689999999997776655555555567778889999999999999998888899
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcc
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (278)
.|++..+.+.... ..+.+.+++|+||++++.++.+.+.+|.+|||+++.+.+++|+++|+...++.+.+.....|....
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 9999888765332 356778999999999998788889999999999999999999999987678888888888888889
Q ss_pred ccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023731 210 KPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 210 ~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~ 246 (278)
.+.|..++.+++..||++|+|++++...+..+.++++
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~ 196 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIK 196 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCCccHHHHHHHHHHh
Confidence 9999999999999999999998777667777776654
No 7
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.95 E-value=8.9e-28 Score=222.43 Aligned_cols=217 Identities=25% Similarity=0.476 Sum_probs=180.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
.....+|+|+|+||||||||++.|++.++ ++.++++|+|+... ....+.|++|..+|++.+.+.+..+..++
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~~------~~i~~nfD~P~a~D~d~L~enL~~Lr~Gk 133 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDSS------RIIDGNFDDPRLTDYDTLLDNIHDLKAGK 133 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecch------hhhCccCCChhhcchhHHHHHHHHHhCCC
Confidence 34568999999999999999999999984 57899999986321 12345688899999999999999999999
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHH
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 204 (278)
.+.+|.|++..+.+.......+.+.+++|+||.+++. +.+++.+|+.|||+++.+.++.|++.||...+|.+.+...++
T Consensus 134 sV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q 212 (656)
T PLN02318 134 SVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQ 212 (656)
T ss_pred ceecCccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999887754334456788999999999984 899999999999999999999999999988899999999999
Q ss_pred HhhccccccccccccccccccEEeeC------CCCcHHHH-----HHHHHHHHHhhccCc--cCCCCCceeeecCCCce
Q 023731 205 YSKFVKPAFDDFILPTKKYADIIIPR------GGDNHVAI-----DLIVQHIRTKLGQHD--LCKIYPNLYVIHSTFQV 270 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n------~~~~~~~~-----~~l~~~I~~~l~~~~--~~~~~~~~~~~~~~~~~ 270 (278)
|...+.|.|..|++|.++.||++|.| +.+++..+ +..+++|+..|.++. ...-+...|+.+|.++.
T Consensus 213 ~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~ 291 (656)
T PLN02318 213 ISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDP 291 (656)
T ss_pred HHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCc
Confidence 99999999999999999999999966 22444444 778899998887652 22334466777777653
No 8
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.95 E-value=2.9e-27 Score=200.86 Aligned_cols=178 Identities=21% Similarity=0.277 Sum_probs=147.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCHHHHH------HccccCCCC--CCcccHHHHHHHHHH
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELA------RVHEYNFDH--PDAFDTEKLLSSMEK 119 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~--~~~~i~~D~~~~~~~~~~~~------~~~~~~~~~--~~~~d~~~~~~~l~~ 119 (278)
+|+|+|+|||||||+++.|.+.+... .+.++++|+||+ ....+.. .....+|++ |+++|++.+.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr-~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~ 79 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR-YERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc-CCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHH
Confidence 58999999999999999999988633 478999999997 3332221 123467888 999999999999999
Q ss_pred hhcCCCccccccCCcC-----CcCCCCC----ccccCCCcEEEEccccc---CCchHHhhhcCeEEEEecChhhhhHHhh
Q 023731 120 LRHGQAVDIPNYDFKS-----YKNNVFP----ARRVNPSDVILLEGILV---FHDSRVRELMNMKIFVDTDADVRLARRI 187 (278)
Q Consensus 120 ~~~~~~i~~~~~~~~~-----~~~~~~~----~~~~~~~~iiiidg~~~---~~d~~~~~~~d~~I~l~~~~e~~~~R~~ 187 (278)
+.+++.+..|.|++.. ..+..+. .....+.+++|+||.+. ..++.+++.+|++|||+++.++++.|++
T Consensus 80 L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 80 YGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 9999999999997632 1111111 11346889999999984 4447899999999999999999999999
Q ss_pred hccccccCCCHHHHHHHHhhccccccccccccccccccEEee
Q 023731 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (278)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~ 229 (278)
+||..++|++.+.+.++|..++ |.|..||.|.++.+|++|.
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999999999998877 9999999999999999984
No 9
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.94 E-value=3.5e-26 Score=192.99 Aligned_cols=183 Identities=27% Similarity=0.461 Sum_probs=141.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC----CCCEEEEcCCCCCCCCCHHHHHHcccc-CCCCCCcccHHHHHHHHHHhhcC-
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLH----DQRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEKLRHG- 123 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~----~~~~~~i~~D~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~~~~- 123 (278)
+|||+|++||||||+|+.|++.+. ...+.++++|+||.. .......+.. .++.|..+|.+.+.+.|..+..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~--~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~ 78 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP--NKELIERGLMDRKGFPESYDMEALLKFLKDIKSGK 78 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc--HHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCC
Confidence 589999999999999999999984 245789999999843 2222222222 24558899999999999999994
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH-----HhhhcCeEEEEecChhhhhHHhhhcccc---ccC
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-----VRELMNMKIFVDTDADVRLARRIRRDTV---EKG 195 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~-----~~~~~d~~I~l~~~~e~~~~R~~~R~~~---~~~ 195 (278)
..+..|.|++....+.......+.+.+++|+||.+++.++. +.+.+|++|||+++.+++.+|+.+|... .++
T Consensus 79 ~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~ 158 (220)
T cd02025 79 KNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAF 158 (220)
T ss_pred CcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999988765544346788999999999998765 8899999999999999986666666422 222
Q ss_pred CCHHH----------------HHHHHhhccccccccccccccccccEEeeCCCCc
Q 023731 196 RDIAT----------------VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 196 ~~~~~----------------~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
++... ....|....+|.+.+|+.|++..||+||+.++++
T Consensus 159 r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 159 SDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred hCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 22222 2234667889999999999999999999877654
No 10
>PLN02348 phosphoribulokinase
Probab=99.94 E-value=8.3e-26 Score=201.64 Aligned_cols=183 Identities=25% Similarity=0.449 Sum_probs=153.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----------------CCEEEEcCCCCCCCCCHHHHHHccccCCCCCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----------------QRVVLVNQDSFYHNLTEQELARVHEYNFDHPD 106 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-----------------~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~ 106 (278)
..+++.+|||+|+|||||||+++.|++.|+. ..+.++++|+||.. ........ ...+.+|.
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~-dr~~r~~~-g~t~ldP~ 122 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL-DRTGRKEK-GVTALDPR 122 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC-ChhhHhhc-CCccCCcc
Confidence 3467899999999999999999999999852 24578999999842 22222222 23345688
Q ss_pred cccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHh
Q 023731 107 AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARR 186 (278)
Q Consensus 107 ~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~ 186 (278)
.+|++.+.+.+..++.|+.+..|.|++.++.... ...+.+.+++|+||.+.++++.+++.+|++|||+++.++++.|+
T Consensus 123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~--~e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RR 200 (395)
T PLN02348 123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP--PELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWK 200 (395)
T ss_pred cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC--cEEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHH
Confidence 8999999999999999999999999999886532 33567889999999999988889999999999999999999999
Q ss_pred hhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCC
Q 023731 187 IRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG 231 (278)
Q Consensus 187 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~ 231 (278)
++|+...+|.+.+++.+.+. ...|.+..|+.|.+..||+||+--
T Consensus 201 I~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 201 IQRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HHhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEEec
Confidence 99998778999999888765 468999999999999999999654
No 11
>PRK15453 phosphoribulokinase; Provisional
Probab=99.93 E-value=5.8e-25 Score=188.24 Aligned_cols=183 Identities=21% Similarity=0.279 Sum_probs=146.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCCCCC-CCCHHHH----HHccccCCCC--CCcccHHHHHHH
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYH-NLTEQEL----ARVHEYNFDH--PDAFDTEKLLSS 116 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--~~~~i~~D~~~~-~~~~~~~----~~~~~~~~~~--~~~~d~~~~~~~ 116 (278)
.++.+|+|+|+|||||||+++.|++.+... +..++++|+||+ ....... .......|++ |+++|++.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 567899999999999999999999988633 478999999996 3222111 1122237887 999999999999
Q ss_pred HHHhhcCCCccccccCCcC-----CcCCCCC---cccc-CCCcEEEEcccccCC---chHHhhhcCeEEEEecChhhhhH
Q 023731 117 MEKLRHGQAVDIPNYDFKS-----YKNNVFP---ARRV-NPSDVILLEGILVFH---DSRVRELMNMKIFVDTDADVRLA 184 (278)
Q Consensus 117 l~~~~~~~~i~~~~~~~~~-----~~~~~~~---~~~~-~~~~iiiidg~~~~~---d~~~~~~~d~~I~l~~~~e~~~~ 184 (278)
++.+..++....|.|.+.- ..+..+. +..+ .+.+++|+||.+.+. +..+++.+|++|||+++.+.++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 9999998887777775321 2222121 1233 468999999998863 36789999999999999999999
Q ss_pred HhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEee
Q 023731 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIP 229 (278)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~ 229 (278)
|+++||..++|++.+.+.+++..+ +|.|..||.|....+|+.+.
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrr-mPdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRR-MPDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHh-CChHhhhCCCCcccCcEEEE
Confidence 999999999999999999999887 49999999999999999874
No 12
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=1.7e-25 Score=183.16 Aligned_cols=175 Identities=27% Similarity=0.475 Sum_probs=143.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~--~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
+|+|+|++||||||+|+.|++.+. +..+.++++|+||+.. ...... ...++.+..+|++.+.+.+..+..++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~-~~~~~~--~g~~d~~~~~d~~~l~~~l~~l~~~~~~~ 77 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR-KTPRDE--DGNYDFESILDLDLLNKNLHDLLNGKEVE 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc-cccccc--CCCCCCCccccHHHHHHHHHHHHCCCeee
Confidence 589999999999999999999985 2457899999999654 111112 22355566689999999999999999999
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhh-hhHHhhhccccccCCCHHHHHHHHh
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADV-RLARRIRRDTVEKGRDIATVLDQYS 206 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~-~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (278)
.|.|++..+.+.......+.+.+++|+||.+++. +.+.+.+|++|||+++.+. ++.|++.||...+|.+.+..+.++
T Consensus 78 ~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~- 155 (179)
T cd02028 78 LPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW- 155 (179)
T ss_pred cccceeECCccCCCceEEeCCCCEEEEecHHhcC-HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-
Confidence 9999999988754333566788999999999985 7899999999999999998 999999999989999999999884
Q ss_pred hccccccccccccccccccEEee
Q 023731 207 KFVKPAFDDFILPTKKYADIIIP 229 (278)
Q Consensus 207 ~~~~~~~~~~i~~~~~~aD~iI~ 229 (278)
....+.+..++.|++..||++++
T Consensus 156 ~~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 156 PSVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred ccccCchhhcCCCchhccceecc
Confidence 44444555566779999999985
No 13
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.93 E-value=2.9e-25 Score=193.23 Aligned_cols=187 Identities=25% Similarity=0.443 Sum_probs=148.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC--C--CCEEEEcCCCCCCCCCHHHHHHcc-ccCCCCCCcccHHHHHHHHHH
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLH--D--QRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEK 119 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~--~--~~~~~i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~l~~ 119 (278)
.+.+.+|||+|++||||||+++.|++.+. + ..+.++++|+|+..... ....+ ...++.|+++|.+.+.+.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~--l~~~g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQV--LKERNLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHH--HHHcCCccccCCChhccHHHHHHHHHH
Confidence 46789999999999999999999999885 1 24788999999954332 22222 124567899999999999999
Q ss_pred hhcCCC-ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH----------HhhhcCeEEEEecChhhhhHHhhh
Q 023731 120 LRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR----------VRELMNMKIFVDTDADVRLARRIR 188 (278)
Q Consensus 120 ~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~----------~~~~~d~~I~l~~~~e~~~~R~~~ 188 (278)
+..|.. +..|.|++....+.......+.+++++|+||.+.++.+. +.+.+|++|||+++.+++.+|+++
T Consensus 137 Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~ 216 (290)
T TIGR00554 137 LKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYIN 216 (290)
T ss_pred HHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHH
Confidence 999885 899999999998876555556789999999999987655 468999999999999999999888
Q ss_pred cccccc---------------C----CCHHHHHHHHhhccccccccccccccccccEEeeCCCC
Q 023731 189 RDTVEK---------------G----RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (278)
Q Consensus 189 R~~~~~---------------~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~ 233 (278)
|....+ + .+.....+.|.....|.+.++|.|++..||+||..+.+
T Consensus 217 R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~ 280 (290)
T TIGR00554 217 RFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGAN 280 (290)
T ss_pred HHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCC
Confidence 852111 1 22233344577888999999999999999999998764
No 14
>PRK05439 pantothenate kinase; Provisional
Probab=99.93 E-value=3.5e-25 Score=194.00 Aligned_cols=189 Identities=25% Similarity=0.432 Sum_probs=149.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEcCCCCCCCCCHHHHHHcccc-CCCCCCcccHHHHHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSME 118 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----~~~~~i~~D~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~l~ 118 (278)
..+.+.+|||+|++||||||+|+.|+..+.. ..+.++++|+||.... .....+.+ .++.|+++|.+.+.+.|.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~--~l~~~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNA--VLEERGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHH--HHhhhhccccCCCcccccHHHHHHHHH
Confidence 3467899999999999999999999998742 3578999999995432 22222322 256799999999999999
Q ss_pred HhhcCCC-ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH------hhhcCeEEEEecChhhhhHHhhhccc
Q 023731 119 KLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV------RELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 119 ~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~------~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
.++.|.. +..|.|++....+.......+.+++++|+||.++++.+.. .+.+|++|||+++.+.+.+|+++|..
T Consensus 160 ~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~ 239 (311)
T PRK05439 160 DVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFL 239 (311)
T ss_pred HHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999986 8999999999987655455677899999999998865555 89999999999999998887777653
Q ss_pred cc---------------cCCCHH----HHHHHHhhccccccccccccccccccEEeeCCCCc
Q 023731 192 VE---------------KGRDIA----TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 192 ~~---------------~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
.. .+.+.+ .....|.....|.+.++|.|++..||+||..+.++
T Consensus 240 ~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h 301 (311)
T PRK05439 240 KLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADH 301 (311)
T ss_pred HHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCC
Confidence 21 122222 23345667778999999999999999999988654
No 15
>PRK07429 phosphoribulokinase; Provisional
Probab=99.91 E-value=3.6e-23 Score=183.54 Aligned_cols=183 Identities=25% Similarity=0.492 Sum_probs=150.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
..++.+|+|+|+|||||||+++.|++.+++....+++.|+|+. .........+ +...+|...+++.+.+.+..+..++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~g-~~~l~p~~~~~d~l~~~l~~L~~g~ 82 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHS-YDRKQRKELG-ITALDPRANNLDIMYEHLKALKTGQ 82 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccccc-CCHHHHHhcC-CcccCccchHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999999766678889999873 3333333322 2233567788889999999999999
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHH
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQ 204 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 204 (278)
.+..|.|++..+.... ...+.+.+++|+||++++++..+++.+|++|||+++.+++++|+++|+...+|.+.+++.+.
T Consensus 83 ~I~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 83 PILKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred ceecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 9999999998876532 23456678999999998778888899999999999999999999999977788888888776
Q ss_pred HhhccccccccccccccccccEEeeCCC
Q 023731 205 YSKFVKPAFDDFILPTKKYADIIIPRGG 232 (278)
Q Consensus 205 ~~~~~~~~~~~~i~~~~~~aD~iI~n~~ 232 (278)
+.. ..+.+..|+.|.+..||+||++..
T Consensus 161 i~~-r~pd~~~yI~P~k~~ADiVI~~~p 187 (327)
T PRK07429 161 IEA-REPDFEAYIRPQRQWADVVIQFLP 187 (327)
T ss_pred HHH-hCccHhhhhcccccCCCEEEEcCC
Confidence 654 689999999999999999998764
No 16
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.91 E-value=2.7e-23 Score=180.52 Aligned_cols=178 Identities=27% Similarity=0.511 Sum_probs=147.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~ 129 (278)
+|+|+|++||||||+++.|++.+.+.+..++++|+|++ +........ .+...++...+++.+.+.+..++.++.+..|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~-g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P 78 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS-LDRKGRKET-GITALDPRANNFDLMYEQLKALKEGQAIEKP 78 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc-CCHHHHHHh-hcccccccchhHHHHHHHHHHHHCCCCcccc
Confidence 58999999999999999999999877788999999874 333333332 2334456777788888999999999999999
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcc
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFV 209 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 209 (278)
.|++..+.... ...+.+.+++|+||+++++++.+.+.+|++|||+++.+++++|+++|+...+|.+.+++.+.+.. .
T Consensus 79 ~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r 155 (273)
T cd02026 79 IYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-R 155 (273)
T ss_pred cccccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-h
Confidence 99988876421 23456678999999998888899999999999999999999999999977788888998888765 5
Q ss_pred ccccccccccccccccEEeeCCC
Q 023731 210 KPAFDDFILPTKKYADIIIPRGG 232 (278)
Q Consensus 210 ~~~~~~~i~~~~~~aD~iI~n~~ 232 (278)
.+.+..|+.|.+..||+||+...
T Consensus 156 ~~~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 156 KPDFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred chhHHHHhccccccCcEEEEccC
Confidence 88999999999999999997653
No 17
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.90 E-value=8.3e-24 Score=195.04 Aligned_cols=234 Identities=58% Similarity=0.936 Sum_probs=215.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-------CCCEEEEcCCCCCCCCCHHHHH--HccccCCCCCCcccHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLH-------DQRVVLVNQDSFYHNLTEQELA--RVHEYNFDHPDAFDTEKLL 114 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~-------~~~~~~i~~D~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~ 114 (278)
....+.+|++.|.++|||||++..+.+.+. +..+..+++|.||+.++..... ..+.+.|++|++++++.+.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 568899999999999999999999888887 6788999999999888766543 3346899999999999999
Q ss_pred HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcccccc
Q 023731 115 SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (278)
Q Consensus 115 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~ 194 (278)
..++.+..+..+..|.|++.+..+.......+.++++++++|++++++.+++.+.+..+|++++.+.++.|++.|+...+
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 99999999999999999999999866656678888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhccCccCCCCCceeeecCCCceeeee
Q 023731 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQVSFSY 274 (278)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (278)
|..++....+|..+..|.|..|+.|.++.+|.+|+..+++..+++.++.+|...|..++...++++...+++++|+.|+|
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~~~~~~l~~~~~~l~~t~~i~~~~ 279 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAEKSYVRLYNNVLSLPDTNQIKGKL 279 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhccccccccccceecCCccccCCce
Confidence 99999999999999999999999999999999999999998899999999999998887778999999999999999999
Q ss_pred ccc
Q 023731 275 SLT 277 (278)
Q Consensus 275 ~~~ 277 (278)
+++
T Consensus 280 t~~ 282 (473)
T KOG4203|consen 280 TLL 282 (473)
T ss_pred eEe
Confidence 986
No 18
>PRK06696 uridine kinase; Validated
Probab=99.88 E-value=2.6e-22 Score=170.19 Aligned_cols=184 Identities=24% Similarity=0.329 Sum_probs=131.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCHHHHHHccccCCC--CCCcccHHHHHHHHHHh
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKL 120 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--~~~~i~~D~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~l~~~ 120 (278)
...+.+|+|+|++||||||+|+.|++.|+.. .+..+++|+||... ......+..... .+..+|++.+.+.+...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~--~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~ 96 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPR--VIRYRRGRESAEGYYEDAYDYTALRRLLLDP 96 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCH--HHHHHcCCCChhhcCccccCHHHHHHHHHhh
Confidence 4578999999999999999999999999633 34667799999543 222222211100 02578999888887764
Q ss_pred h-cCC--CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCC
Q 023731 121 R-HGQ--AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRD 197 (278)
Q Consensus 121 ~-~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~ 197 (278)
. .++ .+..|.|++............+.+..++|+||++++ .+.+...+|.+|||+++.+++++|+..|+...+|.
T Consensus 97 l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~-~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~- 174 (223)
T PRK06696 97 LGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL-RPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS- 174 (223)
T ss_pred ccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh-hhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-
Confidence 3 222 234456766655443222334566789999999987 68888999999999999999999999998655564
Q ss_pred HHHHHHHHhhccccccccccccc--cccccEEeeCCC
Q 023731 198 IATVLDQYSKFVKPAFDDFILPT--KKYADIIIPRGG 232 (278)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~i~~~--~~~aD~iI~n~~ 232 (278)
.+.....|+....+.+..|+.+. +..||+||+|+.
T Consensus 175 ~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 175 YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 44556667777777777776544 688999999886
No 19
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.88 E-value=1.6e-22 Score=165.64 Aligned_cols=142 Identities=18% Similarity=0.304 Sum_probs=112.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~ 129 (278)
+|+|+|++||||||+|+.|++.+. ++.++++|+||+..........+.+.|+.|.++|++.+.+.|..+..++.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~ 78 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF 78 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence 589999999999999999999984 588999999997655433333355679999999999999999999998765444
Q ss_pred ccCCcCCcCC-------------CCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccc
Q 023731 130 NYDFKSYKNN-------------VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE 193 (278)
Q Consensus 130 ~~~~~~~~~~-------------~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~ 193 (278)
.++....... ........+.+++|+||.+++.++.+.+.+|++|||+++.+++++|+++|++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~ 155 (187)
T cd02024 79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYV 155 (187)
T ss_pred ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCcc
Confidence 4433322211 011234566789999999998888999999999999999999999999998543
No 20
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.88 E-value=1.3e-21 Score=166.44 Aligned_cols=188 Identities=21% Similarity=0.308 Sum_probs=144.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEE-EcCCCCCCCCCHHHHHHcccc-CCCCCCcccHHHHHHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVL-VNQDSFYHNLTEQELARVHEY-NFDHPDAFDTEKLLSSMEK 119 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~--~~~-i~~D~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~l~~ 119 (278)
...++.+|+|+|++|||||||++.|++.+.+.+ ..+ ++.|+|+..... ....+.. .++.+..++.+.+.+.+..
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~--~~~~g~~~~~~~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAV--LDAHGLRPRKGAPETFDVAGLAALLRR 106 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHH--HHhcccccccCCCCCCCHHHHHHHHHH
Confidence 346789999999999999999999999986432 234 899998844222 2222221 2456778999999999999
Q ss_pred hhcCC-CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch----HHhhhcCeEEEEecChhhhhHHhhhcccccc
Q 023731 120 LRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDTVEK 194 (278)
Q Consensus 120 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~----~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~ 194 (278)
+..+. .+..|.|+.................+++|+||.+.+.+. .+.+.+|.+|||+++.+.+++|+.+|+ ...
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~ 185 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAG 185 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-Hhc
Confidence 99887 788899988877654432222235789999999887653 566789999999999999999999995 346
Q ss_pred CCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcH
Q 023731 195 GRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (278)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~ 235 (278)
+.+.++..+.+.....+.+ +++.+.+..||+||+|+++.+
T Consensus 186 g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~~ 225 (229)
T PRK09270 186 GLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATGE 225 (229)
T ss_pred CCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCcc
Confidence 7777888877766566665 688888999999999988654
No 21
>PRK07667 uridine kinase; Provisional
Probab=99.85 E-value=1e-20 Score=156.92 Aligned_cols=172 Identities=17% Similarity=0.315 Sum_probs=122.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCHHHHHHccccCCCC--CCcccHHHHHHH-HHHh
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDH--PDAFDTEKLLSS-MEKL 120 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~-l~~~ 120 (278)
....+|||+|++||||||+|+.|++.+.. ..+.+++.|+|+.+..... ..+...+.. ...+|.+.+.+. +..+
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~--~~~~~~~~~~~~~~~d~~~L~~~v~~~L 92 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRY--HTGFEEWYEYYYLQWDIEWLRQKFFRKL 92 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHH--hcCCCchhhhhhhhhhHHHHHHHHHHhh
Confidence 45589999999999999999999999853 2467999999986433211 111111110 124677777654 5778
Q ss_pred hcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023731 121 RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~ 200 (278)
..++.+..|.|++....... ....+.+.+++|+||++++ +..+.+.+|.+|||++|.+.+++|+++|+. .+.+
T Consensus 93 ~~~~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~-~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~----~~~~- 165 (193)
T PRK07667 93 QNETKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQ-RKEWRDFFHYMVYLDCPRETRFLRESEETQ----KNLS- 165 (193)
T ss_pred cCCCeEEEeeeccccccccc-cceecCCCCEEEEEehhhh-hhhHHhhceEEEEEECCHHHHHHHHhcccH----hHHH-
Confidence 88888899999988866532 2233456799999999975 678889999999999999999999998862 2333
Q ss_pred HHHHHhhcccccccccccc--ccccccEEee
Q 023731 201 VLDQYSKFVKPAFDDFILP--TKKYADIIIP 229 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~--~~~~aD~iI~ 229 (278)
+++.+..+.+..|+.. .+..||+||+
T Consensus 166 ---~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 166 ---KFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred ---HHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 3444445666777653 3678999874
No 22
>PRK08233 hypothetical protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=142.16 Aligned_cols=174 Identities=22% Similarity=0.395 Sum_probs=115.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 126 (278)
++++|+|+|++||||||+|+.|++.++ ...++..|.++................ ....++.+.+.+.+..+..+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~--- 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDKGA-NYSEWVLTPLIKDIQELIAK--- 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhhccC-ChhhhhhHHHHHHHHHHHcC---
Confidence 368999999999999999999999985 345666676653322211111100000 01234444555555443321
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccc-cCCCHHHHHHHH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQY 205 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~-~~~~~~~~~~~~ 205 (278)
...+++++|+++....+.+...+|++|||+++.+++++|+.+|+... ...........|
T Consensus 76 --------------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~ 135 (182)
T PRK08233 76 --------------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHY 135 (182)
T ss_pred --------------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 11267889999877667888899999999999999999999886432 122344556677
Q ss_pred hhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 206 SKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
.....|.|..++.+....++++|+++. .++++...|...+.
T Consensus 136 ~~~~~~~y~~~~~~~~~~~~~vId~~~----~~e~i~~~i~~~l~ 176 (182)
T PRK08233 136 LNYARPLYLEALHTVKPNADIVLDGAL----SVEEIINQIEEELY 176 (182)
T ss_pred HHHHHHHHHHHhhcCccCCeEEEcCCC----CHHHHHHHHHHHHH
Confidence 777888888888777778999997654 35666666665554
No 23
>PRK06547 hypothetical protein; Provisional
Probab=99.76 E-value=8.7e-18 Score=136.39 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=107.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
....+.+|+|+|++||||||+++.|++.+ ++.++++|+||...... ..+.+.+.+.+.. .+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~---~~~~~~~d~~~~~~~~~--------------~~~~~~l~~~~l~--~g 71 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART---GFQLVHLDDLYPGWHGL--------------AAASEHVAEAVLD--EG 71 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh---CCCeecccceecccccC--------------ChHHHHHHHHHHh--CC
Confidence 35778899999999999999999999987 58899999998543210 1122334444433 34
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcC-----eEEEEecChhhhhHHhhhccccccCCCH
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMN-----MKIFVDTDADVRLARRIRRDTVEKGRDI 198 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d-----~~I~l~~~~e~~~~R~~~R~~~~~~~~~ 198 (278)
+...++ |++...... . ...+.+.+++|+||.+++. +.+++.+| +.|||++|.+++++|+++|++. .
T Consensus 72 ~~~~~~-yd~~~~~~~-~-~~~l~~~~vVIvEG~~al~-~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~ 142 (172)
T PRK06547 72 RPGRWR-WDWANNRPG-D-WVSVEPGRRLIIEGVGSLT-AANVALASLLGEVLTVWLDGPEALRKERALARDPD-----Y 142 (172)
T ss_pred CCceec-CCCCCCCCC-C-cEEeCCCCeEEEEehhhcc-HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----h
Confidence 444445 666655432 1 2245567899999999985 67888899 9999999999999999999842 2
Q ss_pred HHHHHHHhhcccccccccccc--ccccccEEee
Q 023731 199 ATVLDQYSKFVKPAFDDFILP--TKKYADIIIP 229 (278)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~--~~~~aD~iI~ 229 (278)
.. |+....+.++.|+.. .+..||+++.
T Consensus 143 ~~----~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 143 AP----HWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred hH----HHHHHHHHHHHHHhcCCChhccEEEec
Confidence 22 333344455555543 4577998874
No 24
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.76 E-value=1.5e-17 Score=140.73 Aligned_cols=146 Identities=27% Similarity=0.432 Sum_probs=122.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEcCCCCCCCCCHHHHHHccccCC-CCCCcccHHHHHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSFYHNLTEQELARVHEYNF-DHPDAFDTEKLLSSME 118 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~l~ 118 (278)
....+.+|||+|++|+||||+|+.|+..+.. ..+..+.+|.|+.. .......+...+ +.|+.||...+.+.+.
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~--n~~L~~~glm~rKGfPeSyD~~~ll~fl~ 155 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYP--NAVLDERGLMARKGFPESYDVAALLRFLS 155 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccC--HhHhhhccccccCCCCccccHHHHHHHHH
Confidence 4678899999999999999999999998852 24789999999944 333333333332 4589999999999999
Q ss_pred HhhcCCC-ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch----HHhhhcCeEEEEecChhhhhHHhhhccc
Q 023731 119 KLRHGQA-VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 119 ~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~----~~~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
.++.+.. +..|.|++............+..++++|+||.+.+++. .+.+.||++|||+++.+...+|.+.|.-
T Consensus 156 ~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 156 DVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 9997764 88999999999998888888899999999999998876 4557889999999999999999999963
No 25
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.74 E-value=2e-18 Score=143.19 Aligned_cols=172 Identities=23% Similarity=0.337 Sum_probs=111.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCC-cccHHHHH------
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPD-AFDTEKLL------ 114 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~-~~d~~~~~------ 114 (278)
++|+|+|++||||||+++.|++.+ |+.+++.|.+.+.+.... ...++.-.+...+ .+|...+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 479999999999999999999987 689999999876653221 1234443444444 45543333
Q ss_pred ----HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023731 115 ----SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 115 ----~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
+.|+.+.+ |......... ........++++|.|+.+ +..+...||.+|||++|.+++.+|+.+|+
T Consensus 79 ~~~~~~l~~i~h------P~i~~~~~~~----~~~~~~~~~vv~e~pll~-E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 79 PEERRWLENLIH------PYVRERFEEE----LAQLKSNPIVVLVIPLLF-EAKLTDLCSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred HHHHHHHHHHHh------HHHHHHHHHH----HHhcCCCCEEEEEeHHhc-CcchHhCCCEEEEEECCHHHHHHHHHHcC
Confidence 23333333 3221111111 111223468999999988 67888899999999999999999999997
Q ss_pred ccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHh
Q 023731 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~ 248 (278)
+. +.++........ .+. .+....||++|+|+++ ++.+.+++.+.
T Consensus 148 g~----s~e~~~~ri~~Q-~~~-----~~k~~~aD~vI~N~g~----~e~l~~qv~~~ 191 (195)
T PRK14730 148 GL----TEEEAEARINAQ-WPL-----EEKVKLADVVLDNSGD----LEKLYQQVDQL 191 (195)
T ss_pred CC----CHHHHHHHHHhC-CCH-----HHHHhhCCEEEECCCC----HHHHHHHHHHH
Confidence 43 344444443332 221 2246789999999874 45555555544
No 26
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.73 E-value=5.7e-18 Score=140.47 Aligned_cols=173 Identities=22% Similarity=0.350 Sum_probs=109.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHH-------HHccccCCCCCCcccHHHHHH-----
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL-------ARVHEYNFDHPDAFDTEKLLS----- 115 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~----- 115 (278)
+.+|+|+|++||||||+++.|++ + ++.+++.|.+.+.+..... ..++.-.+...+.+|...+.+
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-L---GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-c---CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 46899999999999999999999 5 6899999998876543211 223333343344555443333
Q ss_pred -----HHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023731 116 -----SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 116 -----~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
.|+.+.+ |.......... .......++++|.|+.+ +..+.+.||.+|+|++|.+++.+|+.+|+
T Consensus 78 ~~~~~~L~~i~h------P~v~~~~~~~~----~~~~~~~~vv~e~pll~-e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~ 146 (194)
T PRK00081 78 PEARKKLEAILH------PLIREEILEQL----QEAESSPYVVLDIPLLF-ENGLEKLVDRVLVVDAPPETQLERLMARD 146 (194)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHH----HHcccCCEEEEEehHhh-cCCchhhCCeEEEEECCHHHHHHHHHHcC
Confidence 3333333 33222111110 11122368999999988 57888899999999999999999999997
Q ss_pred ccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
+. +.++........ .+.. .....||++|+|+++ ++.+.+++...+
T Consensus 147 ~~----s~e~~~~ri~~Q-~~~~-----~~~~~ad~vI~N~g~----~e~l~~qv~~i~ 191 (194)
T PRK00081 147 GL----SEEEAEAIIASQ-MPRE-----EKLARADDVIDNNGD----LEELRKQVERLL 191 (194)
T ss_pred CC----CHHHHHHHHHHh-CCHH-----HHHHhCCEEEECCCC----HHHHHHHHHHHH
Confidence 43 333433333221 2211 135679999999874 455555555443
No 27
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.72 E-value=6.8e-18 Score=140.12 Aligned_cols=161 Identities=18% Similarity=0.270 Sum_probs=103.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH------HHHccccCCCCCCcccHHHHHHH---
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE------LARVHEYNFDHPDAFDTEKLLSS--- 116 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~--- 116 (278)
..+.+|||+|++||||||+++.|++.+ ++.+++.|.+.+.+.... ...+|.-.+. .+.+|...+.+.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~l---g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~ 79 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKL---NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITE 79 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHc---CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhC
Confidence 345899999999999999999999876 588999998876653221 1234443343 345555444332
Q ss_pred -------HHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH--hhhcCeEEEEecChhhhhHHhh
Q 023731 117 -------MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV--RELMNMKIFVDTDADVRLARRI 187 (278)
Q Consensus 117 -------l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~--~~~~d~~I~l~~~~e~~~~R~~ 187 (278)
|+.+.+ |......... ....+..++++|.|+.+ +... ...||.+|+|++|.+++++|+.
T Consensus 80 d~~~~~~Le~i~H------P~V~~~~~~~-----~~~~~~~~vv~eipLL~-E~~~~~~~~~D~vi~V~a~~e~ri~Rl~ 147 (204)
T PRK14733 80 SKEAKKWLEDYLH------PVINKEIKKQ-----VKESDTVMTIVDIPLLG-PYNFRHYDYLKKVIVIKADLETRIRRLM 147 (204)
T ss_pred CHHHHHHHHhhhh------HHHHHHHHHH-----HHhcCCCeEEEEechhh-hccCchhhhCCEEEEEECCHHHHHHHHH
Confidence 333322 4332222111 11123468999999987 4433 4679999999999999999999
Q ss_pred hccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCC
Q 023731 188 RRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGG 232 (278)
Q Consensus 188 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~ 232 (278)
+|++..+ ++........ .+..+ ....||++|+|++
T Consensus 148 ~Rd~~s~----~~a~~ri~~Q-~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 148 ERDGKNR----QQAVAFINLQ-ISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred HcCCCCH----HHHHHHHHhC-CCHHH-----HHHhCCEEEECcC
Confidence 9985543 3333333222 22211 3688999999998
No 28
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.72 E-value=6.5e-18 Score=140.05 Aligned_cols=160 Identities=22% Similarity=0.336 Sum_probs=106.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHH--------
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLL-------- 114 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~-------- 114 (278)
+|+|+|++||||||+++.|++. |+.+++.|...+.+...+ ...+|...+...+..|...+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~----g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~ 76 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL----GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEE 76 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC----CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHH
Confidence 4899999999999999999873 689999998876654321 124444445444555554433
Q ss_pred --HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcccc
Q 023731 115 --SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTV 192 (278)
Q Consensus 115 --~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~ 192 (278)
+.|+.+.+ |......... ........++++|.|+.+ +..+...||.+|||++|.+++++|+.+|++.
T Consensus 77 ~~~~L~~i~h------P~v~~~~~~~----~~~~~~~~~vi~e~pLL~-E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~ 145 (196)
T PRK14732 77 KLKALNELIH------PLVRKDFQKI----LQTTAEGKLVIWEVPLLF-ETDAYTLCDATVTVDSDPEESILRTISRDGM 145 (196)
T ss_pred HHHHHHHHhh------HHHHHHHHHH----HHHHhcCCcEEEEeeeee-EcCchhhCCEEEEEECCHHHHHHHHHHcCCC
Confidence 33444443 4332222111 111223468899999988 6777889999999999999999999999743
Q ss_pred ccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCc
Q 023731 193 EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
+.++...+..... + ..+....||++|+|+++.
T Consensus 146 ----s~e~a~~ri~~Q~-~-----~~~k~~~aD~vI~N~~~~ 177 (196)
T PRK14732 146 ----KKEDVLARIASQL-P-----ITEKLKRADYIVRNDGNR 177 (196)
T ss_pred ----CHHHHHHHHHHcC-C-----HHHHHHhCCEEEECCCCH
Confidence 4455544443322 2 223478899999998753
No 29
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.72 E-value=6.1e-18 Score=144.06 Aligned_cols=205 Identities=13% Similarity=0.196 Sum_probs=120.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHHH-----
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLLS----- 115 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~----- 115 (278)
+.+|||+|+.||||||+++.|.+.+ |+.+++.|...+++...+ ...++...+...+.+|...+.+
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~---G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d 77 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEH---HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSD 77 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCC
Confidence 4689999999999999999999876 699999998876654322 1234444443345566554443
Q ss_pred -----HHHHhhcCCCccccccCCcCCcCCCCC------c-cccCCCcEEEEcccccCCchH-HhhhcCeEEEEecChhhh
Q 023731 116 -----SMEKLRHGQAVDIPNYDFKSYKNNVFP------A-RRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVR 182 (278)
Q Consensus 116 -----~l~~~~~~~~i~~~~~~~~~~~~~~~~------~-~~~~~~~iiiidg~~~~~d~~-~~~~~d~~I~l~~~~e~~ 182 (278)
.|+.+.+ |............. . .......++++|.|+.+ +.. ....||.+|+|+++.+++
T Consensus 78 ~~~~~~Le~i~H------P~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~-E~~~~~~~~D~iv~V~a~~e~r 150 (244)
T PTZ00451 78 AQARRALGRIMN------PPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLF-ETKTFTYFVSASVVVSCSEERQ 150 (244)
T ss_pred HHHHHHHHHHhC------HHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhh-ccCchhhcCCeEEEEECCHHHH
Confidence 3444433 42222111111000 0 00122358999999988 454 345789999999999999
Q ss_pred hHHhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCC--CCcHHHHHHHHHHHHHhhccCccCCCCCc
Q 023731 183 LARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRG--GDNHVAIDLIVQHIRTKLGQHDLCKIYPN 260 (278)
Q Consensus 183 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~--~~~~~~~~~l~~~I~~~l~~~~~~~~~~~ 260 (278)
++|+.+|++. +.++...+........ .....||++|+|+ ++.+.-...+...+. .+.++....+..-
T Consensus 151 i~RL~~R~g~----s~eea~~Ri~~Q~~~~------ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~-~~~~~~~~~~~~~ 219 (244)
T PTZ00451 151 IERLRKRNGF----SKEEALQRIGSQMPLE------EKRRLADYIIENDSADDLDELRGSVCDCVA-WMSRQSNKRLTYI 219 (244)
T ss_pred HHHHHHcCCC----CHHHHHHHHHhCCCHH------HHHHhCCEEEECCCCCCHHHHHHHHHHHHH-HHHhhCChHHHHH
Confidence 9999999643 3445444443322211 1368899999998 754322222332222 2333332333444
Q ss_pred eeeecCCCceeee
Q 023731 261 LYVIHSTFQVSFS 273 (278)
Q Consensus 261 ~~~~~~~~~~~~~ 273 (278)
+.++|+-+-+++.
T Consensus 220 ~~~~~~~~~~~~~ 232 (244)
T PTZ00451 220 FGTVAAAAVGVAA 232 (244)
T ss_pred HHHCChHHHHHHH
Confidence 5666666555543
No 30
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.71 E-value=1e-18 Score=142.60 Aligned_cols=160 Identities=27% Similarity=0.422 Sum_probs=101.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHH-------
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLL------- 114 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~------- 114 (278)
++|||+|+.||||||+++.|++ + |+.++++|.+.+.+...+ ...++...+...+..|...+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~---G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L---GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T---T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C---CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 5899999999999999999999 3 799999998776654321 134555555555556654433
Q ss_pred ---HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccc
Q 023731 115 ---SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 115 ---~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
+.|+.+.+ |......... ........++++|.|+.+ +..+...||.+|+|++|.+++++|+.+|++
T Consensus 77 ~~~~~L~~iih------P~I~~~~~~~----~~~~~~~~~~v~e~pLL~-E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~ 145 (180)
T PF01121_consen 77 EKLKKLENIIH------PLIREEIEKF----IKRNKSEKVVVVEIPLLF-ESGLEKLCDEVIVVYAPEEIRIKRLMERDG 145 (180)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHH----HHHCHSTSEEEEE-TTTT-TTTGGGGSSEEEEEE--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh------HHHHHHHHHH----HHhccCCCEEEEEcchhh-hhhHhhhhceEEEEECCHHHHHHHHHhhCC
Confidence 33444443 4332222211 111122378999999987 678899999999999999999999999984
Q ss_pred cccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCC
Q 023731 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (278)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~ 233 (278)
. +.++........ .+..+ ....||+||+|+++
T Consensus 146 ~----~~~~~~~ri~~Q-~~~~~-----k~~~ad~vI~N~g~ 177 (180)
T PF01121_consen 146 L----SEEEAEARIASQ-MPDEE-----KRKRADFVIDNNGS 177 (180)
T ss_dssp S----THHHHHHHHHTS---HHH-----HHHH-SEEEE-SSH
T ss_pred C----cHHHHHHHHHhC-CCHHH-----HHHhCCEEEECCCC
Confidence 4 444544443332 22222 26789999999874
No 31
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.71 E-value=1.2e-17 Score=136.80 Aligned_cols=165 Identities=20% Similarity=0.328 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHHHHHHH---
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLLSSMEK--- 119 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~~l~~--- 119 (278)
+|+|+|++||||||+++.|++ + |+.++++|.+.+++.... ...++...+...+.+|...+.+.+-.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~---g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 76 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L---GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C---CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence 589999999999999999999 4 699999999887764422 11233333333455665444333211
Q ss_pred -hhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCH
Q 023731 120 -LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (278)
Q Consensus 120 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~ 198 (278)
+..-..+..|.+........ .......++++|.|+.+ +..+...||.+|||++|.+++++|+.+|++. +.
T Consensus 77 ~~~~l~~i~hp~i~~~~~~~~----~~~~~~~~vive~plL~-e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~----s~ 147 (179)
T cd02022 77 KRKKLEAITHPLIRKEIEEQL----AEARKEKVVVLDIPLLF-ETGLEKLVDRVIVVDAPPEIQIERLMKRDGL----SE 147 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHccCCCEEEEEehHhh-cCCcHHhCCeEEEEECCHHHHHHHHHHcCCC----CH
Confidence 00001122243322222111 11122368999999987 5677889999999999999999999999843 44
Q ss_pred HHHHHHHhhccccccccccccccccccEEeeCCCC
Q 023731 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD 233 (278)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~ 233 (278)
++....+....... +....||++|+|+++
T Consensus 148 ~~~~~r~~~Q~~~~------~~~~~aD~vI~N~~~ 176 (179)
T cd02022 148 EEAEARIASQMPLE------EKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHHHhcCCHH------HHHHhCCEEEECcCC
Confidence 55555544432211 246789999999875
No 32
>PLN02422 dephospho-CoA kinase
Probab=99.70 E-value=1.9e-17 Score=139.83 Aligned_cols=164 Identities=23% Similarity=0.287 Sum_probs=107.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHH-------HHccccCCCCCCcccHHHHH-------
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQEL-------ARVHEYNFDHPDAFDTEKLL------- 114 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~------- 114 (278)
++|+|+|++||||||+++.|++ + |+.+++.|...+++...+. ..+|.-.+...+.+|...+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~---g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~ 77 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S---GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDP 77 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCH
Confidence 5799999999999999999995 3 7999999998877654332 23444444444556654433
Q ss_pred ---HHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccc
Q 023731 115 ---SSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 115 ---~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
+.|+.+.+ |............ ......+++++|.|+.+ +..+...||.+|+|++|.+++.+|+.+|++
T Consensus 78 ~~~~~Le~IlH------P~V~~~~~~~~~~--~~~~~~~~vv~eipLL~-E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g 148 (232)
T PLN02422 78 SKRQLLNRLLA------PYISSGIFWEILK--LWLKGCKVIVLDIPLLF-ETKMDKWTKPVVVVWVDPETQLERLMARDG 148 (232)
T ss_pred HHHHHHHHHhh------HHHHHHHHHHHHH--HHhcCCCEEEEEehhhh-hcchhhhCCEEEEEECCHHHHHHHHHHcCC
Confidence 33444444 4332222111000 01123468999999988 677888999999999999999999999974
Q ss_pred cccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcH
Q 023731 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH 235 (278)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~ 235 (278)
. +.++........ .+... ....||++|+|+++.+
T Consensus 149 ~----s~eea~~Ri~~Q-~~~ee-----k~~~AD~VI~N~gs~e 182 (232)
T PLN02422 149 L----SEEQARNRINAQ-MPLDW-----KRSKADIVIDNSGSLE 182 (232)
T ss_pred C----CHHHHHHHHHHc-CChhH-----HHhhCCEEEECCCCHH
Confidence 3 334444433222 12211 2678999999998543
No 33
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=5.7e-17 Score=132.60 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=101.9
Q ss_pred hccCCc-eeeeCCcc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+-.+ .|.||++. |++||+ ++.+|.+++|+||||||||||.|+|...-.+ .|...++.+..
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l---------------~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISL---------------SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcce---------------eEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEec
Confidence 567777 99999975 999999 9999999999999999999999999997653 46677777554
Q ss_pred CCCCCHHHHHHccccCCCCCCccc-------------------H----HHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCC
Q 023731 86 YHNLTEQELARVHEYNFDHPDAFD-------------------T----EKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNV 140 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~d-------------------~----~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~ 140 (278)
.........+....+.|++.+-|- . +...+.|+.+...... .+| .++.+..+|.+
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVA 146 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVA 146 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHH
Confidence 422233344444455666544331 1 2223334433333222 344 66777778888
Q ss_pred CCccccCCCcEEEEcccccCCchHHh
Q 023731 141 FPARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
.++...-+++++++|+|++.+||++.
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv 172 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELV 172 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHH
Confidence 77888889999999999999999755
No 34
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.69 E-value=1.2e-16 Score=133.12 Aligned_cols=163 Identities=19% Similarity=0.319 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHH---------
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEK--------- 112 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~--------- 112 (278)
++|+|+|++||||||+++.|+. + |+.+++.|.+.+.+.... ...++.-.+...+.+|...
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~---g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~ 77 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E---GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASP 77 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCH
Confidence 5899999999999999999997 3 789999997654432211 1233443444444555443
Q ss_pred -HHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccc
Q 023731 113 -LLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 113 -~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
..+.++.+.+ |........... ........+++++.++.+ +..+.+.+|.+|||++|.+++++|+.+|++
T Consensus 78 ~~~~~le~i~h------P~v~~~~~~~~~--~~~~~~~~~vv~e~plL~-e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g 148 (200)
T PRK14734 78 EQTALLNAITH------PRIAEETARRFN--EARAQGAKVAVYDMPLLV-EKGLDRKMDLVVVVDVDVEERVRRLVEKRG 148 (200)
T ss_pred HHHHHHHHhhC------HHHHHHHHHHHH--HHHhcCCCEEEEEeecee-EcCccccCCeEEEEECCHHHHHHHHHHcCC
Confidence 3333444444 433221111100 001123468889988877 567778899999999999999999999964
Q ss_pred cccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCc
Q 023731 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
.+.++....+.....+.+ ....||++|+|+++.
T Consensus 149 ----~s~e~~~~ri~~Q~~~~~------k~~~ad~vI~N~g~~ 181 (200)
T PRK14734 149 ----LDEDDARRRIAAQIPDDV------RLKAADIVVDNNGTR 181 (200)
T ss_pred ----CCHHHHHHHHHhcCCHHH------HHHhCCEEEECcCCH
Confidence 334455544433332222 257899999998753
No 35
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.67 E-value=1.9e-16 Score=127.65 Aligned_cols=178 Identities=18% Similarity=0.319 Sum_probs=124.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 126 (278)
+..+|||+|++.|||||||+.|...++ ++.+|++|+||+....-+...-+-..|+..+++|++.+.+.+..+..+...
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~ 80 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHN 80 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccc
Confidence 457999999999999999999999996 789999999997655444333333457778899999999988766665321
Q ss_pred cccccCCcCCc-----CCCCC-ccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023731 127 DIPNYDFKSYK-----NNVFP-ARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 127 ~~~~~~~~~~~-----~~~~~-~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~ 200 (278)
. |.+....-. ....+ +....+..++++||...+.-+.+...+|..|++..+.+++.+|+..|-......+
T Consensus 81 ~-~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~t--- 156 (225)
T KOG3308|consen 81 A-PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDT--- 156 (225)
T ss_pred c-chHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCCCCC---
Confidence 1 111111111 10000 2334567889999999988888999999999999999999999988864332211
Q ss_pred HHHHHhhccccccccccccccccc--cEEeeCCC
Q 023731 201 VLDQYSKFVKPAFDDFILPTKKYA--DIIIPRGG 232 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~a--D~iI~n~~ 232 (278)
-.+.-.++|.|.+++......+ |..+-|+.
T Consensus 157 --gyfd~~~~P~Y~~~~~~~~d~~~h~~~flngd 188 (225)
T KOG3308|consen 157 --GYFDPVVWPHYEKNFEEARDRSRHDSLFLNGD 188 (225)
T ss_pred --ccccCccchHHHHHHHHHHhhcccceeeeccc
Confidence 1222336788888777655554 66665653
No 36
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.66 E-value=3.7e-17 Score=127.53 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH---HHHccccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE---LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
++|.|+|++||||||+|+.|++.+ |..+++...+|+++.... ..++..+.-.+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~--------------------- 56 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL---GLKLVSAGTIFREMARERGMSLEEFSRYAEED--------------------- 56 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh---CCceeeccHHHHHHHHHcCCCHHHHHHHHhcC---------------------
Confidence 479999999999999999999998 588888887775543211 11111111111
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHH
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (278)
|..+.....++ ..+...+.+|+||.+++|-. ....|++|||.+|.+++.+|+.+|++..-.....++..+
T Consensus 57 ---p~iD~~iD~rq----~e~a~~~nvVlegrLA~Wi~--k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~R- 126 (179)
T COG1102 57 ---PEIDKEIDRRQ----KELAKEGNVVLEGRLAGWIV--REYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVER- 126 (179)
T ss_pred ---chhhHHHHHHH----HHHHHcCCeEEhhhhHHHHh--ccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHH-
Confidence 34444443332 12222566899999988732 367899999999999999999999855432222222211
Q ss_pred hhccccccccccc---cccccccEEeeCCCCcH
Q 023731 206 SKFVKPAFDDFIL---PTKKYADIIIPRGGDNH 235 (278)
Q Consensus 206 ~~~~~~~~~~~i~---~~~~~aD~iI~n~~~~~ 235 (278)
....+..|.+++. .....+|++|++..-++
T Consensus 127 E~se~kRY~~~YgIDidDlSiyDLVinTs~~~~ 159 (179)
T COG1102 127 EESEKKRYKKIYGIDIDDLSIYDLVINTSKWDP 159 (179)
T ss_pred HHHHHHHHHHHhCCCCccceeeEEEEecccCCH
Confidence 1112223333321 12567899999887665
No 37
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.66 E-value=1.8e-16 Score=132.90 Aligned_cols=176 Identities=20% Similarity=0.317 Sum_probs=105.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHH------H-HHHccccCCCCC--C--cccHHH--
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQ------E-LARVHEYNFDHP--D--AFDTEK-- 112 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~------~-~~~~~~~~~~~~--~--~~d~~~-- 112 (278)
..+.+|||+|++||||||+++.|.+. |+.+++.|...+.+... . ...++.-.+... + .+|...
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~~----g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~ 78 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAEM----GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIA 78 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHC----CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHH
Confidence 45689999999999999999999983 78999999766554321 1 112332223211 1 134333
Q ss_pred --------HHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhH
Q 023731 113 --------LLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLA 184 (278)
Q Consensus 113 --------~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~ 184 (278)
..+.|+.+.+ |........... ........++++|+++.+ +......||.+|+|.+|.+++.+
T Consensus 79 ~~vf~~~~~~~~l~~i~h------p~i~~~~~~~i~--~~~~~~~~vvv~e~pLL~-e~~~~~~~d~ii~V~a~~e~~~~ 149 (208)
T PRK14731 79 QVVFSDPEKLGALNRLIH------PKVFAAFQRAVD--RAARRGKRILVKEAAILF-ESGGDAGLDFIVVVAADTELRLE 149 (208)
T ss_pred HHHhCCHHHHHHHHHHHC------HHHHHHHHHHHH--HHHhcCCCEEEEEeeeee-ecCchhcCCeEEEEECCHHHHHH
Confidence 3344444444 432211111100 011123468899999776 67777889999999999999999
Q ss_pred HhhhccccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHh
Q 023731 185 RRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 185 R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~ 248 (278)
|+.+|++. +.+....+... ..+... ....||++|+|+++ ++++.+++.+.
T Consensus 150 Rl~~R~~~----s~e~~~~Ri~~-q~~~~~-----~~~~ad~vI~N~g~----~e~l~~~i~~~ 199 (208)
T PRK14731 150 RAVQRGMG----SREEIRRRIAA-QWPQEK-----LIERADYVIYNNGT----LDELKAQTEQL 199 (208)
T ss_pred HHHHcCCC----CHHHHHHHHHH-cCChHH-----HHHhCCEEEECCCC----HHHHHHHHHHH
Confidence 99999743 33444333322 122111 23569999999875 44444444443
No 38
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.64 E-value=1.4e-16 Score=131.96 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=101.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHH------
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKL------ 113 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~------ 113 (278)
++++|||+|.+||||||+|+.+++ + |+.++++|.+.+++.... ...++.-.....+.+|...+
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~---G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~ 76 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-L---GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFN 76 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-c---CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcC
Confidence 468999999999999999999999 5 799999999887553322 23333333322333443332
Q ss_pred ----HHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhc
Q 023731 114 ----LSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 114 ----~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R 189 (278)
...++.+.+ |....... . ........++++|-|+.+ +......||.+|.|++|++++++|+++|
T Consensus 77 ~~~~~~~Le~i~h------Pli~~~~~-~----~~~~~~~~~~~~eiplL~-e~~~~~~~d~Vi~V~a~~e~r~eRl~~R 144 (201)
T COG0237 77 DPEARLKLEKILH------PLIRAEIK-V----VIDGARSPYVVLEIPLLF-EAGGEKYFDKVIVVYAPPEIRLERLMKR 144 (201)
T ss_pred CHHHHHHHHHhhh------HHHHHHHH-H----HHHHhhCCceEEEchHHH-hccccccCCEEEEEECCHHHHHHHHHhc
Confidence 233333333 32211111 0 111122227888888876 4545556999999999999999999999
Q ss_pred cccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHH
Q 023731 190 DTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHV 236 (278)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~ 236 (278)
++. +.+........ .++..+ ....||++++|+++...
T Consensus 145 ~~~----~~e~~~~~~~~-Q~~~~e-----k~~~ad~vi~n~~~i~~ 181 (201)
T COG0237 145 DGL----DEEDAEARLAS-QRDLEE-----KLALADVVIDNDGSIEN 181 (201)
T ss_pred CCC----CHHHHHHHHHh-cCCHHH-----HHhhcCChhhcCCCHHH
Confidence 732 33333333222 222222 25889999999986543
No 39
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.64 E-value=7.4e-16 Score=143.48 Aligned_cols=203 Identities=21% Similarity=0.247 Sum_probs=122.8
Q ss_pred eeeeCCcc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH
Q 023731 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE 93 (278)
Q Consensus 15 ~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~ 93 (278)
-+++|+.- ++|+.+ .. ++++|+|+|||||||||+++.|++.| ++.+++.+.+|+.++...
T Consensus 266 A~~~g~~RLIDN~~~---------------~~-~~~ii~i~G~sgsGKst~a~~la~~l---~~~~~d~g~~YR~~a~~~ 326 (512)
T PRK13477 266 AVRCGSTRLIDNVFL---------------MK-RQPIIAIDGPAGAGKSTVTRAVAKKL---GLLYLDTGAMYRAVTWLV 326 (512)
T ss_pred EEEeCCeEEEeeeEe---------------cc-CCcEEEEECCCCCCHHHHHHHHHHHc---CCeEecCCceehHHHHHH
Confidence 34677753 788888 55 77999999999999999999999999 599999999997654333
Q ss_pred HHHccccCCCCCCcccHHHHHHHHHHhhc--------CCCccccccCCcCCcCC--------------------CCCccc
Q 023731 94 LARVHEYNFDHPDAFDTEKLLSSMEKLRH--------GQAVDIPNYDFKSYKNN--------------------VFPARR 145 (278)
Q Consensus 94 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~--------~~~i~~~~~~~~~~~~~--------------------~~~~~~ 145 (278)
... ++.+.++ ..+...+..+.. +..+..+.++....-+. ...+..
T Consensus 327 l~~--~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~ 399 (512)
T PRK13477 327 LQE--GIDPQDE-----EALAELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQR 399 (512)
T ss_pred HHc--CcCCcCH-----HHHHHHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 221 2222222 122222221111 11223333332221110 000111
Q ss_pred cCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccC---CCHHHHHHHHhhccccccccccccccc
Q 023731 146 VNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKG---RDIATVLDQYSKFVKPAFDDFILPTKK 222 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~ 222 (278)
+....-+|+||.-.+. .+.+..|++|||+++.+++.+|+.++.. .++ ...+.+.+.+..+......+.+.|...
T Consensus 400 ~~~~~~iV~eGRDigt--vV~P~AdlKIfL~As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~ 476 (512)
T PRK13477 400 IGEKGGLVAEGRDIGT--HVFPDAELKIFLTASVEERARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRK 476 (512)
T ss_pred HhhcCCEEEEccccee--EEcCCCCEEEEEECCHHHHHHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhcccccccccc
Confidence 2233358999986653 3445578999999999999999876631 122 235666666666555555666777666
Q ss_pred c-ccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 223 Y-ADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 223 ~-aD~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
. ++++|++++.+ ++++++.|.+.+
T Consensus 477 a~dai~IDTs~ls---ieeVv~~Il~~i 501 (512)
T PRK13477 477 ADDAIELITDGLS---IEEVVDKIIDLY 501 (512)
T ss_pred cCCeEEEECCCCC---HHHHHHHHHHHH
Confidence 5 66999888755 344444444444
No 40
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.64 E-value=4.5e-16 Score=137.43 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=110.8
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------ 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------------ 74 (278)
+|+=++ .+.||++ ++++||+ .+..|.+++|.|||||||||+++.||+...+
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l---------------~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNL---------------DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcCCceeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 455566 9999998 9999999 9999999999999999999999999998764
Q ss_pred -------CCEEEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCcc
Q 023731 75 -------QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPAR 144 (278)
Q Consensus 75 -------~~~~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~~ 144 (278)
.++.++-++ ..|..++..++-.++...-..+..-...+..+..+.+...... .+| ..+.+..+|++..+.
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRA 147 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARA 147 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHH
Confidence 244444444 3445556666555443322222222223344444444433322 223 667777777777778
Q ss_pred ccCCCcEEEEcccccCCchHHhhhc------------CeEEEEecChhhhhH
Q 023731 145 RVNPSDVILLEGILVFHDSRVRELM------------NMKIFVDTDADVRLA 184 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~~------------d~~I~l~~~~e~~~~ 184 (278)
.+.+++++++|+|++.+|..++... -..|||+.+..+++.
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt 199 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT 199 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh
Confidence 8899999999999998887655322 367999988766543
No 41
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.62 E-value=1.3e-15 Score=134.05 Aligned_cols=164 Identities=16% Similarity=0.194 Sum_probs=119.7
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----------
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------- 75 (278)
+++..+ ++.|+ + .+|++||| .+.+|.++|+.||+||||||+.++|++.+.+.
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~---------------~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSF---------------EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe
Confidence 466677 99999 4 67999999 99999999999999999999999999987641
Q ss_pred ----------CEEEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC--CccccccCCcCCcCCCCC
Q 023731 76 ----------RVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFP 142 (278)
Q Consensus 76 ----------~~~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~ 142 (278)
.+.++.++ .+|..++..++..+....+..+...+.+...+.++.+.... ......++.+..+++..+
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHH
Confidence 24444444 45677777776655433343333344556777777777665 333457777777887766
Q ss_pred ccccCCCcEEEEcccccCCchHHhhhc----------C-eEEEEecChhhhhHHhh
Q 023731 143 ARRVNPSDVILLEGILVFHDSRVRELM----------N-MKIFVDTDADVRLARRI 187 (278)
Q Consensus 143 ~~~~~~~~iiiidg~~~~~d~~~~~~~----------d-~~I~l~~~~e~~~~R~~ 187 (278)
...+.+++++++|+|++++|+..+..+ + ..|++.++.....+.+.
T Consensus 149 ~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 149 LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204 (293)
T ss_pred HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhC
Confidence 777889999999999999998544222 2 67888887666666653
No 42
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=1.1e-15 Score=128.13 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=107.1
Q ss_pred ccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC----------
Q 023731 10 IEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR---------- 76 (278)
Q Consensus 10 ~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~---------- 76 (278)
++-++ ++.|+++ +|+|||| .+.+|.+|+|.||||||||||.+.+++...+ .|
T Consensus 4 l~i~~v~~~f~~~~vl~~i~L---------------~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~ 68 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDINL---------------SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT 68 (248)
T ss_pred EEEEeeEEEeCceEEecccee---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC
Confidence 44445 8999995 5999999 9999999999999999999999999998764 22
Q ss_pred -----EEEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCccccCC
Q 023731 77 -----VVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 77 -----~~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~~~~~~ 148 (278)
..++.++ ..+..++..++..++....+.+..-..+...+.|+.....+.- .+| ..+.+..+|...++..+.+
T Consensus 69 ~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 69 GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred CCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcC
Confidence 2333333 2333344444444332221111111123455666666554432 445 6777888888888888999
Q ss_pred CcEEEEcccccCCchHHhhhc------------CeEEEEecChhhhh
Q 023731 149 SDVILLEGILVFHDSRVRELM------------NMKIFVDTDADVRL 183 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~~~~~~------------d~~I~l~~~~e~~~ 183 (278)
++++++|+|++.+|...+..+ -.+++|+.+.+++.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv 195 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAV 195 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 999999999999987433221 36788888877654
No 43
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.62 E-value=1.8e-16 Score=134.95 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=96.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
|++..+ ...|++ ..|+|||| +++++.+++|.||+|||||||.|+|++.+++ .|...+++.+.
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~---------------~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSF---------------SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEECCeeEEecceE---------------EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 466677 999998 67999999 9999999999999999999999999999875 34444444332
Q ss_pred C---------------------CCCCHHHHHHccccC----CCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcC
Q 023731 86 Y---------------------HNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKN 138 (278)
Q Consensus 86 ~---------------------~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~ 138 (278)
. ..++..+...++++. |..+..-|.+...+.|+.......... ...+.+..++
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr 146 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR 146 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH
Confidence 2 223333334444442 222333455566666766555433222 3445555555
Q ss_pred CCCCccccCCCcEEEEcccccCCch
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
...++..+.+++++++|+|..++|.
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCH
Confidence 5566667889999999999999875
No 44
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.61 E-value=6.9e-16 Score=126.38 Aligned_cols=185 Identities=18% Similarity=0.263 Sum_probs=114.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC----
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG---- 123 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~---- 123 (278)
.++|+|.||+||||||+|+.|++.| ++.+++...+|+.++...... ...+ -|.+.+.+.+..+...
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~L---g~~yldTGamYRa~a~~~l~~--~~~~-----~d~~~~~~l~~~~~i~f~~~ 73 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKL---GFHYLDTGAMYRAVALAALKH--GVDL-----DDEDALVALAKELDISFVND 73 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHh---CCCeecccHHHHHHHHHHHHc--CCCC-----ccHHHHHHHHHhCCceeccc
Confidence 4899999999999999999999999 599999988886554322111 1111 1112222222211110
Q ss_pred -------CCc-----------------cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecCh
Q 023731 124 -------QAV-----------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDA 179 (278)
Q Consensus 124 -------~~i-----------------~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~ 179 (278)
..+ ..|..+.....+ ++......+-+|+||.-.+ ..+.+..+++|||++++
T Consensus 74 ~~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~---Qr~~a~~~~~~V~dGRDiG--TvV~PdA~lKiFLtAS~ 148 (222)
T COG0283 74 DRVFLNGEDVSEEIRTEEVGNAASKVAAIPEVREALVKL---QRAFAKNGPGIVADGRDIG--TVVFPDAELKIFLTASP 148 (222)
T ss_pred ceEEECCchhhhhhhhHHHHHHHHHHHccHHHHHHHHHH---HHHHHhcCCCEEEecCCCc--ceECCCCCeEEEEeCCH
Confidence 000 001111111111 1122233466999997655 24556678999999999
Q ss_pred hhhhHHhhhcccccc-CCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 180 DVRLARRIRRDTVEK-GRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 180 e~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
++|.+|+.+...... ....+++......+......+-+.|.++..| ++|+++..+ +++++++|.+.+.
T Consensus 149 e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~ms---ieeVv~~il~~~~ 218 (222)
T COG0283 149 EERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLS---IEEVVEKILELIR 218 (222)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCc---HHHHHHHHHHHHH
Confidence 999999988764332 2226777777777777777888899888888 677777654 6666666665443
No 45
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.60 E-value=1.9e-14 Score=129.44 Aligned_cols=170 Identities=19% Similarity=0.319 Sum_probs=111.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCHHHHHHcccc--------CCCCCCcccHHHHHH
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEY--------NFDHPDAFDTEKLLS 115 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~ 115 (278)
.++.+|||+|++|||||||++.|.+.+.. ..+..|+.|+|| ++..+....... ..+.|..+|.....+
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY--Lt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e 287 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY--LTAEGQAELRERNPGNALLELRGNAGSHDLQFSVE 287 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc--CChHHHHHHHhhCccchhhcccCCCccccHhhHHH
Confidence 46899999999999999999999998853 347889999999 444333332111 123467788877777
Q ss_pred HHHHh----hcCCCccccccCCcCCc----CCCCCcc--ccCCCcEEEEcccccCCchH---------------------
Q 023731 116 SMEKL----RHGQAVDIPNYDFKSYK----NNVFPAR--RVNPSDVILLEGILVFHDSR--------------------- 164 (278)
Q Consensus 116 ~l~~~----~~~~~i~~~~~~~~~~~----~~~~~~~--~~~~~~iiiidg~~~~~d~~--------------------- 164 (278)
.+..+ +.+..+.+|.|++.... |.....+ ...+.+++|+||++.+..+.
T Consensus 288 ~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~ 367 (460)
T PLN03046 288 TLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEA 367 (460)
T ss_pred HHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHH
Confidence 77766 56778899999999854 4322222 24678999999988876431
Q ss_pred ----HhhhcCeEEEEecCh-hhhhHHhhhccccc-----cCCCHHHHHHHHhhccccccccccc
Q 023731 165 ----VRELMNMKIFVDTDA-DVRLARRIRRDTVE-----KGRDIATVLDQYSKFVKPAFDDFIL 218 (278)
Q Consensus 165 ----~~~~~d~~I~l~~~~-e~~~~R~~~R~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 218 (278)
+...+|..|+|+++. +...+++.++.... .+.+.++ ..+|....+|.|+.|..
T Consensus 368 Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeq-V~~FV~~YmPaY~~y~~ 430 (460)
T PLN03046 368 YYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEE-VMDFVSRYLPAYKAYLP 430 (460)
T ss_pred HHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHhhhHHHHHHH
Confidence 112346777777764 66666665544222 1333333 45566666777665543
No 46
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.59 E-value=1.7e-15 Score=125.08 Aligned_cols=169 Identities=22% Similarity=0.316 Sum_probs=105.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHHH-------
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLLS------- 115 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~------- 115 (278)
+|+|+|++||||||+++.|++.. ++.+++.|.+.+.+.... ...++.-.+...+..|...+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~---~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY---HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 48999999999999999999975 489999998875543221 1233433343344455433332
Q ss_pred ---HHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcccc
Q 023731 116 ---SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTV 192 (278)
Q Consensus 116 ---~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~ 192 (278)
.++.+.+ |.......... ........+++++.+..+ +..+...+|.+|||+++.+++++|+.+|++
T Consensus 78 ~~~~le~ilh------P~i~~~i~~~i---~~~~~~~~~vvi~~pll~-e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~- 146 (188)
T TIGR00152 78 ELKWLNNLLH------PLIREWMKKLL---AQFQSKLAYVLLDVPLLF-ENKLRSLCDRVIVVDVSPQLQLERLMQRDN- 146 (188)
T ss_pred HHHHHHHhhC------HHHHHHHHHHH---HHhhcCCCEEEEEchHhh-hCCcHHhCCEEEEEECCHHHHHHHHHHcCC-
Confidence 2222222 33322222111 001122358899998877 356778999999999999999999999973
Q ss_pred ccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHH
Q 023731 193 EKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (278)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I 245 (278)
.+.++...++... .+.+ .....||++|+|+++ ++.+..++
T Consensus 147 ---~s~~~~~~r~~~q-~~~~-----~~~~~ad~vI~N~~~----~e~l~~~~ 186 (188)
T TIGR00152 147 ---LTEEEVQKRLASQ-MDIE-----ERLARADDVIDNSAT----LADLVKQL 186 (188)
T ss_pred ---CCHHHHHHHHHhc-CCHH-----HHHHhCCEEEECCCC----HHHHHHHH
Confidence 3344554444433 2222 236779999999874 44444443
No 47
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.59 E-value=4.6e-16 Score=142.07 Aligned_cols=174 Identities=19% Similarity=0.273 Sum_probs=105.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHHHH-----
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLLSS----- 116 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~~----- 116 (278)
.+|+|+|++||||||+++.|++ + |+.+++.|...+++.... ...++.-.++..+.+|...+.+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~---G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~ 77 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L---GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADD 77 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C---CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCH
Confidence 5799999999999999999998 4 799999998876643321 12344434444455665544433
Q ss_pred -----HHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccc
Q 023731 117 -----MEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 117 -----l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
++.+.+ |......... ........+++++.++.+ +..+...||.+|||++|.+++++|+.+|++
T Consensus 78 ~~~~~le~i~h------P~I~~~i~~~----i~~~~~~~vvv~eipLL~-E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg 146 (395)
T PRK03333 78 EARAVLNGIVH------PLVGARRAEL----IAAAPEDAVVVEDIPLLV-ESGMAPLFHLVVVVDADVEVRVRRLVEQRG 146 (395)
T ss_pred HHHHHHHHhhh------HHHHHHHHHH----HHhcCCCCEEEEEeeeee-cCCchhhCCEEEEEECCHHHHHHHHHhcCC
Confidence 333222 3221111110 111123345566556555 677888999999999999999999988653
Q ss_pred cccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHH
Q 023731 192 VEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~ 247 (278)
.+.++....+..... ..+....||++|+|+++.......+.+.++.
T Consensus 147 ----~s~~~a~~ri~~Q~~------~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~ 192 (395)
T PRK03333 147 ----MAEADARARIAAQAS------DEQRRAVADVWLDNSGTPDELVEAVRALWAD 192 (395)
T ss_pred ----CCHHHHHHHHHhcCC------hHHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 333343333332211 1123678999999887644444444444443
No 48
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.1e-15 Score=129.70 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=105.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C----------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q---------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~---------- 75 (278)
+|+-+| +++|++ .+|+|||| .+.+|.+++|+||+|||||||.|.+.+.+.| .
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l---------------~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISL---------------SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccc
Confidence 567777 999996 68999999 9999999999999999999999999998764 1
Q ss_pred -------CEEEEcCC---CCCCCCCHHHHHHcccc----CCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCC
Q 023731 76 -------RVVLVNQD---SFYHNLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (278)
Q Consensus 76 -------~~~~i~~D---~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 139 (278)
.+.++++- ++-.+.+..+.-.++.+ .|..+..-|.+...++|+........ .+...+.+..+|.
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV 148 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRV 148 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHH
Confidence 24555552 22334566666666544 24445556678888888877665433 2345666666776
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++..+.+++++++|+|+...|+.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~ 173 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVA 173 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHH
Confidence 6777888999999999999998763
No 49
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.2e-14 Score=118.63 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=112.1
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
.++.++ .+.||.+ +|++||+ .++++.+.+++|||||||||+.+.|.+.... .|-..+
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l---------------~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~ 71 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINL---------------DIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL 71 (253)
T ss_pred eeEecceeEEECchhhhccCce---------------eccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE
Confidence 366666 9999996 5999999 9999999999999999999999999997542 355677
Q ss_pred cCCCCCC-CCCHHHHHHccccCCCCCCcccHH-----------------HHHHHHHHhhcCC--------Ccccc--ccC
Q 023731 81 NQDSFYH-NLTEQELARVHEYNFDHPDAFDTE-----------------KLLSSMEKLRHGQ--------AVDIP--NYD 132 (278)
Q Consensus 81 ~~D~~~~-~~~~~~~~~~~~~~~~~~~~~d~~-----------------~~~~~l~~~~~~~--------~i~~~--~~~ 132 (278)
++.+.|. .....+.+....+.|+.|+-|... .+.+..+.-..+. ....+ .++
T Consensus 72 ~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LS 151 (253)
T COG1117 72 DGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLS 151 (253)
T ss_pred CCeeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCC
Confidence 7777774 455666666667788887765431 2222222111111 01112 233
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH----Hhhh-----cCeEEEEecChhhhhHHhhhc
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR----VREL-----MNMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~----~~~~-----~d~~I~l~~~~e~~~~R~~~R 189 (278)
.+..+|+..++....+++++++|+|++.+||- +.+. -+.+|-+.++......|+..+
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHh
Confidence 44445555556667889999999999999972 2121 156676677777777776544
No 50
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.58 E-value=7.9e-15 Score=117.69 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=109.5
Q ss_pred hccCCc-eeeeCC-c-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE------
Q 023731 9 MIEASS-GVHFSG-F-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV------ 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~------ 78 (278)
||+=++ ++.|++ . +|+|||| .++++..+.|+|||||||||+.|.|.....| .|-.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~---------------~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~d 65 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSF---------------HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD 65 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceE---------------eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCee
Confidence 455566 888888 4 7999999 9999999999999999999999999998764 2222
Q ss_pred -----------------EEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 79 -----------------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 79 -----------------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
++.+|. .....+..++..+....-+.+..--.....+.|+....+... ..+..+.+..+|
T Consensus 66 l~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQR 145 (223)
T COG2884 66 LSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQR 145 (223)
T ss_pred cccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHH
Confidence 223331 112222233322222222211111123444555554444322 224788888889
Q ss_pred CCCCccccCCCcEEEEcccccCCchHHh----h------hcCeEEEEecChhhhhHHhhhcc
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSRVR----E------LMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~~~----~------~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
...++..+..+.+++.|+|...+||... . ..+.+|.+.++......++.+|-
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcE
Confidence 8888888999999999999999998543 1 22567777777777777665553
No 51
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.56 E-value=3.8e-15 Score=132.27 Aligned_cols=161 Identities=19% Similarity=0.202 Sum_probs=110.7
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C----------
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q---------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~---------- 75 (278)
+++-.+ ++.||++ +++|||+ .+.++.++++.|||||||||+.++|++...| .
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl---------------~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISL---------------DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecCCeeEEeccee---------------eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence 345455 9999984 6999999 9999999999999999999999999998764 2
Q ss_pred --------CEEEEcCCC-CCCCCCHHHHHHccccCCC-CCCcccHHHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCc
Q 023731 76 --------RVVLVNQDS-FYHNLTEQELARVHEYNFD-HPDAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPA 143 (278)
Q Consensus 76 --------~~~~i~~D~-~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~ 143 (278)
++.++-++. .+..++..++..++...-. .+..-...+..+.+..+.....- .+| ..+.+..+|++.++
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHH
Confidence 334444442 3344555565555433111 11111112444555544443321 223 66777778877778
Q ss_pred cccCCCcEEEEcccccCCchHHhhhc------------CeEEEEecChhhhhH
Q 023731 144 RRVNPSDVILLEGILVFHDSRVRELM------------NMKIFVDTDADVRLA 184 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~~~------------d~~I~l~~~~e~~~~ 184 (278)
..+.+++++++|+|++.+|..++..+ =..|||+.+.++++.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ 202 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA 202 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh
Confidence 88899999999999999998766443 258899999888765
No 52
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.55 E-value=1.9e-14 Score=118.50 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=117.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----------CCEEEEcCCCCCCCCCHHHHHHccc-----cCCCCCCcc
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------QRVVLVNQDSFYHNLTEQELARVHE-----YNFDHPDAF 108 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----------~~~~~i~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~ 108 (278)
..+....+|+.|++|+||||++.++.+.++. +-..++.+|.|+ ++.+....+.+ .--+.|..|
T Consensus 115 ~~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFH--lsr~~LD~f~dP~~AharRGapwTF 192 (323)
T KOG2702|consen 115 TSNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFH--LSRRCLDLFKDPQTAHARRGAPWTF 192 (323)
T ss_pred cccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchh--hhHHHHHhhcChHHHHhhcCCCccc
Confidence 5778889999999999999999999997653 123568999998 44444333221 123456789
Q ss_pred cHHHHHHHHHHhh--cCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch----HHhhhcCeEEEEecChhhh
Q 023731 109 DTEKLLSSMEKLR--HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS----RVRELMNMKIFVDTDADVR 182 (278)
Q Consensus 109 d~~~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~----~~~~~~d~~I~l~~~~e~~ 182 (278)
|.+.+..+++.++ ....+..|.|++..++............+++|+||.|.++++ .+.+.+|.++||+++.+..
T Consensus 193 D~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a 272 (323)
T KOG2702|consen 193 DSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAA 272 (323)
T ss_pred CHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHH
Confidence 9999999998888 445788899999999988776666677899999999998875 4557789999999999999
Q ss_pred hHHhhhcccc
Q 023731 183 LARRIRRDTV 192 (278)
Q Consensus 183 ~~R~~~R~~~ 192 (278)
.+|+.+|...
T Consensus 273 ~~RVa~RHl~ 282 (323)
T KOG2702|consen 273 EERVAKRHLQ 282 (323)
T ss_pred HHHHHHHhhc
Confidence 9999999743
No 53
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.5e-14 Score=120.55 Aligned_cols=141 Identities=10% Similarity=0.228 Sum_probs=96.4
Q ss_pred hccCCc-eeeeCC-c----cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-F----HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~----~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
|++.+| .+.|++ . +|++||| ++.+|.++||.|+||||||||++.|++...+ .|...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~---------------~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~ 67 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSL---------------EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeE---------------EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 567777 999998 4 6999999 9999999999999999999999999998764 4556666
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCc-ccH---------------------HHHHHHHHHhhcCCCc--ccc-ccCCcCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDA-FDT---------------------EKLLSSMEKLRHGQAV--DIP-NYDFKSY 136 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~-~d~---------------------~~~~~~l~~~~~~~~i--~~~-~~~~~~~ 136 (278)
+................++.|++|.. ++. .+..+.+..+...... .+| .++.+..
T Consensus 68 G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~ 147 (252)
T COG1124 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQR 147 (252)
T ss_pred CcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHH
Confidence 65444322111222233456666531 211 1123334433333322 234 6677777
Q ss_pred cCCCCCccccCCCcEEEEcccccCCchH
Q 023731 137 KNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 137 ~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+|.+.++....+++++|+|++.+.+|..
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~s 175 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVS 175 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHH
Confidence 7777777788899999999999998864
No 54
>PLN02796 D-glycerate 3-kinase
Probab=99.54 E-value=1.3e-13 Score=121.97 Aligned_cols=116 Identities=28% Similarity=0.453 Sum_probs=85.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEcCCCCCCCCCHHHHHHcccc--------CCCCCCcccHHHHHH
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--RVVLVNQDSFYHNLTEQELARVHEY--------NFDHPDAFDTEKLLS 115 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--~~~~i~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~ 115 (278)
.++.+|+|+|++||||||+++.|.+.+... ....++.|+|| ++..+...+... .-+.|..+|.+.+.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY--Lt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e 175 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY--LTAADQAKLAEANPGNALLELRGNAGSHDLALGVE 175 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc--cchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHH
Confidence 567999999999999999999999999743 36888999999 333333222211 123467889999998
Q ss_pred HHHHhh----cCCCccccccCCcCCc----CCCCCc-ccc-CCCcEEEEcccccCCch
Q 023731 116 SMEKLR----HGQAVDIPNYDFKSYK----NNVFPA-RRV-NPSDVILLEGILVFHDS 163 (278)
Q Consensus 116 ~l~~~~----~~~~i~~~~~~~~~~~----~~~~~~-~~~-~~~~iiiidg~~~~~d~ 163 (278)
.+..+. .+..+.+|.|++.... |..... ..+ .+.+++|+||++.+..+
T Consensus 176 ~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p 233 (347)
T PLN02796 176 TLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKP 233 (347)
T ss_pred HHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCC
Confidence 888887 5677899999999865 332212 223 57899999999987743
No 55
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.53 E-value=2.5e-15 Score=122.86 Aligned_cols=199 Identities=15% Similarity=0.196 Sum_probs=107.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC-CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ-DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~-D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
..++|+|.|+.|+||||||+.|++.++..-+..+.. +.|...+. ..+.+|.|.-.-.|-..++.+....+..+..
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY----~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~ 78 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFY----EDPERYAFLLQIYFLLNRFKKIKKALSDKNN 78 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHH----HhHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 457899999999999999999999996332322222 22221111 1111111111111222333333333322211
Q ss_pred c-cccccCCc-CCcCCCCCccccCCCcEEEEcccccC-C--chHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023731 126 V-DIPNYDFK-SYKNNVFPARRVNPSDVILLEGILVF-H--DSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 126 i-~~~~~~~~-~~~~~~~~~~~~~~~~iiiidg~~~~-~--d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~ 200 (278)
+ ..+.|... .......+...+.+.+.=...+.+.. . -+......|+.|||+++.++.++|+.+|+...+-.....
T Consensus 79 i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~ 158 (216)
T COG1428 79 ILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDE 158 (216)
T ss_pred ccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccc
Confidence 1 11112111 11110011111122222122222210 0 011112679999999999999999999965443222222
Q ss_pred HHHHHhhccccccccccccccccccEEeeCCC----CcHHHHHHHHHHHHHhhc
Q 023731 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGG----DNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~----~~~~~~~~l~~~I~~~l~ 250 (278)
- ..|...+...|..|+..+..+.++.|+.+. .++++++.++.+|..++.
T Consensus 159 ~-~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~ 211 (216)
T COG1428 159 N-KDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLK 211 (216)
T ss_pred h-HHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHh
Confidence 2 568888888999999988888898887654 356889999999988764
No 56
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.53 E-value=7e-14 Score=117.11 Aligned_cols=160 Identities=21% Similarity=0.279 Sum_probs=107.6
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+=.| +++|++. +++++|| ++.++.++.+.|||||||||+.+++.+.+.+ .|...++..+.
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l---------------~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i 65 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNL---------------TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI 65 (309)
T ss_pred CceeeeeehhcCCceeeeeeeE---------------EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec
Confidence 566667 8999995 6999999 9999999999999999999999999998865 45555555442
Q ss_pred CCCCCHHHHHHccccC------CCC----------C--CcccHHHHHHHHHHhhc----CCC---cccc-ccCCcCCcCC
Q 023731 86 YHNLTEQELARVHEYN------FDH----------P--DAFDTEKLLSSMEKLRH----GQA---VDIP-NYDFKSYKNN 139 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~------~~~----------~--~~~d~~~~~~~l~~~~~----~~~---i~~~-~~~~~~~~~~ 139 (278)
- +....+.+.-..|. |-+ | ..|+.+...+...++.. ... -.+| ..+.+..+|.
T Consensus 66 ~-~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 66 S-DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV 144 (309)
T ss_pred c-cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH
Confidence 2 12222222222221 111 0 13565555444433332 211 1334 6677777777
Q ss_pred CCCccccCCCcEEEEcccccCCchHHhhh------------cCeEEEEecChhhhhH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSRVREL------------MNMKIFVDTDADVRLA 184 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~~~~~------------~d~~I~l~~~~e~~~~ 184 (278)
.-.+....+++++++|+|+..+||-.+.. .-..|||+.+-+++++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 66677788999999999999999843322 2478899998887665
No 57
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.52 E-value=6.4e-15 Score=118.83 Aligned_cols=164 Identities=19% Similarity=0.336 Sum_probs=105.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH-------HHHccccCCCCCCcccHHHHHH-----
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE-------LARVHEYNFDHPDAFDTEKLLS----- 115 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~~~----- 115 (278)
+.+||++|.+||||||+++.+.+. |+.+|+.|...+..-.++ .+.|+.-.....+..|.+.+-+
T Consensus 1 M~iVGLTGgiatGKStVs~~f~~~----G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~ 76 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFKAL----GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD 76 (225)
T ss_pred CeEEEeecccccChHHHHHHHHHc----CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCC
Confidence 468999999999999999999963 799999987665443211 2334433333334444433332
Q ss_pred -----HHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023731 116 -----SMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 116 -----~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
.++.+.+ |.......... ....+...+++++|-|+.| +..+.+++-.+|-|.|+.+.+++|+.+|+
T Consensus 77 ~~~r~~Ln~Ith------P~Ir~em~ke~--~~~~l~G~r~ivlDiPLLF-E~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd 147 (225)
T KOG3220|consen 77 PKKRQALNKITH------PAIRKEMFKEI--LKLLLRGYRVIVLDIPLLF-EAKLLKICHKTVVVTCDEELQLERLVERD 147 (225)
T ss_pred HHHHHHHHhccc------HHHHHHHHHHH--HHHHhcCCeEEEEechHHH-HHhHHhheeeEEEEEECcHHHHHHHHHhc
Confidence 2332222 44333332221 1234567889999999998 67788899999999999999999999998
Q ss_pred ccccCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCc
Q 023731 191 TVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
...+.. .+. +... .+|... ....||++|+|+++.
T Consensus 148 ~lse~d-Ae~---Rl~s-Qmp~~~-----k~~~a~~Vi~Nng~~ 181 (225)
T KOG3220|consen 148 ELSEED-AEN---RLQS-QMPLEK-----KCELADVVIDNNGSL 181 (225)
T ss_pred cccHHH-HHH---HHHh-cCCHHH-----HHHhhheeecCCCCh
Confidence 443322 222 2211 222222 357899999998754
No 58
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.51 E-value=2.9e-14 Score=126.40 Aligned_cols=167 Identities=20% Similarity=0.194 Sum_probs=100.8
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE----
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV---- 78 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~---- 78 (278)
|..||+..+ ++.|++ .+|++||| .+.+|.+++|.||+||||||+.+.|++.+.+ .|..
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl---------------~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G 68 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSF---------------HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCG 68 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceE---------------EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 345778777 999988 57999999 9999999999999999999999999998764 2333
Q ss_pred ---------------EEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC--ccccccCCcCCcCCC
Q 023731 79 ---------------LVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNV 140 (278)
Q Consensus 79 ---------------~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~ 140 (278)
++.++ .++..++..++..+....++.+..-......+.++.+..... .....++.+..++..
T Consensus 69 ~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 69 EPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLT 148 (306)
T ss_pred EecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHH
Confidence 33333 222333433332211100110000001122233333332221 122355556666666
Q ss_pred CCccccCCCcEEEEcccccCCchHHhhhc----------CeEEEEecChhhhhHHhh
Q 023731 141 FPARRVNPSDVILLEGILVFHDSRVRELM----------NMKIFVDTDADVRLARRI 187 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~~~~~----------d~~I~l~~~~e~~~~R~~ 187 (278)
.++..+.+++++++|+|++++|+..+..+ +..|.+.++.....+++.
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 66677889999999999999997433111 456666665555455443
No 59
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.51 E-value=1.2e-13 Score=108.94 Aligned_cols=145 Identities=20% Similarity=0.327 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~ 129 (278)
+|+|+|++||||||+|+.|++.+ ++.+++.|... ............ ....+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~~~~~~~~i~----~e~~~~~~~~~~------~~~~i~~~l~~~~~------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GLPYLDTGGIR----TEEVGKLASEVA------AIPEVRKALDERQR------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCceeccccCC----HHHHHHHHHHhc------ccHhHHHHHHHHHH-------
Confidence 58999999999999999999998 57888888433 211111111100 00111121211110
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccc-cCCCHHHHHHHHhhc
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATVLDQYSKF 208 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~-~~~~~~~~~~~~~~~ 208 (278)
.+...+.+|+||.++.+. +.+.+|+.|||+++++.+.+|+.+|.... .+.+.++..+.+...
T Consensus 61 ---------------~~~~~~~~Vidg~~~~~~--~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 61 ---------------ELAKKPGIVLEGRDIGTV--VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred ---------------HHhhCCCEEEEeeeeeeE--EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 111223478888876542 23567899999999999999999965221 245667777777776
Q ss_pred ccccccccccccc-ccccEEeeCC
Q 023731 209 VKPAFDDFILPTK-KYADIIIPRG 231 (278)
Q Consensus 209 ~~~~~~~~i~~~~-~~aD~iI~n~ 231 (278)
..+.+..|+.++. ...|++|+++
T Consensus 124 d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 124 DERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred HHHhhhcccccccCCCCcEEEeCc
Confidence 6777777777776 5677999763
No 60
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.51 E-value=4.3e-14 Score=126.83 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=100.5
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------- 76 (278)
||+..+ ++.|++. +|++||| .+.+|.+++|.||+|||||||.+.|++.+.+ .|
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~---------------~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSF---------------TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 688888 9999985 7999999 9999999999999999999999999998764 22
Q ss_pred ----------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC--CccccccCCcCCcCCCCCc
Q 023731 77 ----------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 77 ----------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~~ 143 (278)
+.++.++. ++..++..++..+....+..+..-..+...+.++.+.... ......++.+..+++..++
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHH
Confidence 33333332 2333444443322111111110001112223333333221 1122355556666666666
Q ss_pred cccCCCcEEEEcccccCCchHHhhh----------cCeEEEEecChhhhhHHhh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVREL----------MNMKIFVDTDADVRLARRI 187 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~~----------~d~~I~l~~~~e~~~~R~~ 187 (278)
..+.+++++++|+|++++|+..+.. .+..|.+.++......++.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~ 239 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 239 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 6778999999999999999853321 1456666665555555543
No 61
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.50 E-value=6.2e-14 Score=117.24 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=88.3
Q ss_pred ccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 10 IEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 10 ~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
++..+ .+.|+. .+|++||| .+++|.+++|.||||||||||.+.|.....| .|...+..
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l---------------~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNL---------------EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 34445 565643 36999999 9999999999999999999999999998765 34455555
Q ss_pred CCCCCCCCHHHHH----HccccCCCCCCccc----------------------HHHHHHHHHHhhcCCC-c-ccc-ccCC
Q 023731 83 DSFYHNLTEQELA----RVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQA-V-DIP-NYDF 133 (278)
Q Consensus 83 D~~~~~~~~~~~~----~~~~~~~~~~~~~d----------------------~~~~~~~l~~~~~~~~-i-~~~-~~~~ 133 (278)
.+... ++..... ....+.|+...-+. .....+.++.+..+.. . ..| ..+.
T Consensus 67 ~d~~~-l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSG 145 (226)
T COG1136 67 KDLTK-LSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSG 145 (226)
T ss_pred EEcCc-CCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCH
Confidence 33221 2222211 12233444332111 1112222333233221 1 224 6777
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+|++.++..+.+|++++.|+|...+|.+
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 7778888888889999999999999998864
No 62
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=4.6e-14 Score=117.35 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=96.2
Q ss_pred hhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 7 VDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
..+|+-+. ++.||+ ..+++|+| +++++.+.+|.|||||||||+.|.+.+.+.| .|...+.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l---------------~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDL---------------DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeeecCCEEEecCcee---------------eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence 34577777 999999 56999999 9999999999999999999999999999876 456667766
Q ss_pred CCCCCCCHHHHHHc---cccCCCCCC-------------------cccHHHHHH----HHHHhhcCCC--cccc-ccCCc
Q 023731 84 SFYHNLTEQELARV---HEYNFDHPD-------------------AFDTEKLLS----SMEKLRHGQA--VDIP-NYDFK 134 (278)
Q Consensus 84 ~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~d~~~~~~----~l~~~~~~~~--i~~~-~~~~~ 134 (278)
+ +..++..+.... ..+.|+... .+....+.+ .|+....... -.+| ..+.+
T Consensus 71 ~-i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGG 149 (263)
T COG1127 71 D-IPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGG 149 (263)
T ss_pred c-hhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcch
Confidence 6 334444332111 122233221 122222222 2222222222 1334 67777
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCch
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
..+|.+.++....+++++++|+|++++||
T Consensus 150 M~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 77887777888889999999999999998
No 63
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4.7e-14 Score=116.97 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=93.1
Q ss_pred hccCCc-eeee-CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+=.| .+.| ++ .+|++||| .++++..|+|+|+||||||||.|+|.+..++ .|...++..+
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl---------------~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~ 67 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNL---------------EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeE---------------EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccc
Confidence 566666 8999 66 67999999 9999999999999999999999999997764 2334444432
Q ss_pred CCCCCCHHH---HHHccccCCCCCC---------------------------cc---cHHHHHHHHHHhhcCCCc--ccc
Q 023731 85 FYHNLTEQE---LARVHEYNFDHPD---------------------------AF---DTEKLLSSMEKLRHGQAV--DIP 129 (278)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~~~~~~---------------------------~~---d~~~~~~~l~~~~~~~~i--~~~ 129 (278)
... +...+ ......+.|+.++ .| |.....++|+.+...+.. .-.
T Consensus 68 i~~-~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~ 146 (258)
T COG3638 68 ITK-LKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS 146 (258)
T ss_pred hhc-cchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc
Confidence 221 22111 1111222333322 12 223344445544433222 223
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..+.+..+|+..++..+.++++++.|+|.+.+||..
T Consensus 147 ~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~ 182 (258)
T COG3638 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPES 182 (258)
T ss_pred cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhh
Confidence 667777788888888899999999999999999854
No 64
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=1.2e-13 Score=115.42 Aligned_cols=134 Identities=20% Similarity=0.254 Sum_probs=92.5
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC---------CCCCCCC
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD---------SFYHNLT 90 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D---------~~~~~~~ 90 (278)
.+|+|||| +..+|..|||+|++|||||||++.|++.++| .|...++++ .|-++++
T Consensus 41 ~aL~disf---------------~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelT 105 (249)
T COG1134 41 WALKDISF---------------EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELT 105 (249)
T ss_pred EEecCceE---------------EEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccc
Confidence 46999999 9999999999999999999999999999976 333444442 3556677
Q ss_pred HHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc--ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh
Q 023731 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL 168 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~ 168 (278)
.+++..+.....+-....-.+.+.+.++--..|..+..| .|+.+...|++.......+++++++|+.++..|+.+.+.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K 185 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH
Confidence 777665543332211111122333334433445555445 777777778777666778899999999999888866543
Q ss_pred c
Q 023731 169 M 169 (278)
Q Consensus 169 ~ 169 (278)
|
T Consensus 186 ~ 186 (249)
T COG1134 186 C 186 (249)
T ss_pred H
Confidence 3
No 65
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.47 E-value=1.4e-13 Score=110.01 Aligned_cols=161 Identities=16% Similarity=0.272 Sum_probs=98.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
++-|.++|+.||||||+.+.|++.| +..+++.|............+ .|...+. +.++.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L---~~~F~D~D~~Ie~~~g~sI~e----IF~~~GE-------~~FR~~E~----- 62 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL---NLPFIDTDQEIEKRTGMSIAE----IFEEEGE-------EGFRRLET----- 62 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc---CCCcccchHHHHHHHCcCHHH----HHHHHhH-------HHHHHHHH-----
Confidence 3568999999999999999999999 488999997663322111111 1111010 11111111
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhc---CeEEEEecChhhhhHHhhhccccc--cCCCHHHHH
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVE--KGRDIATVL 202 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~---d~~I~l~~~~e~~~~R~~~R~~~~--~~~~~~~~~ 202 (278)
.. . .......+.+|.-|-.++..++.+..+ ..+|||+++.++.++|+......+ ...+..+.+
T Consensus 63 ---------~v--l-~~l~~~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l 130 (172)
T COG0703 63 ---------EV--L-KELLEEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREEL 130 (172)
T ss_pred ---------HH--H-HHHhhcCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHH
Confidence 00 0 011222347888888888777666554 599999999999999988333222 333343445
Q ss_pred HHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023731 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~ 246 (278)
........|.| .+.||++++.+..+...++++++.+.
T Consensus 131 ~~L~~~R~~~Y-------~e~a~~~~~~~~~~~~v~~~i~~~l~ 167 (172)
T COG0703 131 EELLEERQPLY-------REVADFIIDTDDRSEEVVEEILEALE 167 (172)
T ss_pred HHHHHHHHHHH-------HHhCcEEecCCCCcHHHHHHHHHHHH
Confidence 55555566665 57799999988665444455555444
No 66
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=1.6e-13 Score=123.69 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=99.3
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------- 76 (278)
||+-++ ++.|+++ +|++||| .+.++.+++|.||||||||||++.|++.+.+ .|
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNL---------------TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 566666 9999885 5999999 9999999999999999999999999998764 23
Q ss_pred ---------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023731 77 ---------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 77 ---------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
+.++.++. ++..++..++..++......+..-..+...+.++.+...... ....++.+..+++..++.
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 33333332 223344444433321111100000012233334433332211 112556666667666677
Q ss_pred ccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhh
Q 023731 145 RVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVR 182 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~ 182 (278)
.+.+++++++|+|++.+|+..+..+ + .+|++..+.+..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~ 200 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA 200 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 7889999999999999997544221 2 566777766654
No 67
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.46 E-value=1.4e-13 Score=124.22 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=101.4
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------- 76 (278)
||+.++ ++.|+++ .|+++|| .+.++.+++|.||||||||||.+.|++.+.+ .|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISL---------------SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEEC
Confidence 566666 9999985 5999999 9999999999999999999999999998764 23
Q ss_pred ---------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023731 77 ---------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 77 ---------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
+.++.++. ++..++..++..++......+.........+.++.+...... ....++.+..+++...+.
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHH
Confidence 33333332 223344444433321111100001112334444444433211 112556666666666677
Q ss_pred ccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhhh
Q 023731 145 RVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVRL 183 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~~ 183 (278)
.+.+++++++|+|++.+|...+.. .+ .+||++.+.+...
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~ 199 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEAL 199 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 788999999999999999743322 23 5678877777544
No 68
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.1e-13 Score=117.04 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=105.4
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC-
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~- 84 (278)
||.-++ .+.|+.| +++||++ .+..+.++++.|||||||||+.+.+++...| .|..+++...
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l---------------~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l 66 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISL---------------DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVL 66 (345)
T ss_pred ceeehhhhhhccccccccccee---------------eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEec
Confidence 345555 8999997 5999999 9999999999999999999999999999865 3334444432
Q ss_pred ---------------------CCCCCCHHHHHHccccC-CCCCCc-ccHHHHHHHHHHhhcCCC-cccc-ccCCcCCcCC
Q 023731 85 ---------------------FYHNLTEQELARVHEYN-FDHPDA-FDTEKLLSSMEKLRHGQA-VDIP-NYDFKSYKNN 139 (278)
Q Consensus 85 ---------------------~~~~~~~~~~~~~~~~~-~~~~~~-~d~~~~~~~l~~~~~~~~-i~~~-~~~~~~~~~~ 139 (278)
.++.++..++..++... ...|.. -...+..+.|.....++. -.+| ..+.+..+|.
T Consensus 67 ~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRV 146 (345)
T COG1118 67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRV 146 (345)
T ss_pred cchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHH
Confidence 12233334444433211 111211 112233344443333321 1334 6666777777
Q ss_pred CCCccccCCCcEEEEcccccCCchHHhhhc------------CeEEEEecChhhhhH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSRVRELM------------NMKIFVDTDADVRLA 184 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~~~~~~------------d~~I~l~~~~e~~~~ 184 (278)
+.++.....++++++|+|+..+|..+++.+ -.++||+.+.+..++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 777777889999999999999997655333 268899988887654
No 69
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.46 E-value=9.6e-14 Score=112.49 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=89.7
Q ss_pred hccCCc-eeeeCCc--cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC--
Q 023731 9 MIEASS-GVHFSGF--HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ-- 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~~--~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~-- 82 (278)
|++... .++|+.+ ++.||+| ....|.+.||.|++||||||+.+.|+..+.| +|...++.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF---------------~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d 65 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSF---------------EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVD 65 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeE---------------EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecc
Confidence 455555 8999995 5999999 9999999999999999999999999999865 33333333
Q ss_pred ------------------CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC--CccccccCCcCCcCCCCC
Q 023731 83 ------------------DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNVFP 142 (278)
Q Consensus 83 ------------------D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~~~ 142 (278)
-.+|..++.+++..+-...++-...--...+.+..+.+.... +-....|+.+..+++..+
T Consensus 66 ~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA 145 (245)
T COG4555 66 TVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA 145 (245)
T ss_pred cccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH
Confidence 244544555544332111111110000111222222222111 112246777777777777
Q ss_pred ccccCCCcEEEEcccccCCch
Q 023731 143 ARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 143 ~~~~~~~~iiiidg~~~~~d~ 163 (278)
+..+.+|.++++|+|+.++|-
T Consensus 146 RAlvh~P~i~vlDEP~sGLDi 166 (245)
T COG4555 146 RALVHDPSILVLDEPTSGLDI 166 (245)
T ss_pred HHHhcCCCeEEEcCCCCCccH
Confidence 888899999999999999885
No 70
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.46 E-value=1.3e-13 Score=116.11 Aligned_cols=188 Identities=18% Similarity=0.273 Sum_probs=101.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHH---------------HccccCCCCCC-----c
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELA---------------RVHEYNFDHPD-----A 107 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~---------------~~~~~~~~~~~-----~ 107 (278)
+++|+|+||+||||||+++.|++.+ ++.+++.+.+|+........ ....+.|.... .
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~---~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL---GYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 4789999999999999999999998 47888888877543211100 00001110000 0
Q ss_pred ccHHHHHHHHHHhhcCC----CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhh
Q 023731 108 FDTEKLLSSMEKLRHGQ----AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRL 183 (278)
Q Consensus 108 ~d~~~~~~~l~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~ 183 (278)
++.+.+...+..-..+. ....|.++...... +..+...+-+|++|.+.... +.+..+++||++++.+.+.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~----qr~~a~~~~~Vi~Gr~~~~~--v~~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKR----QQALAKNDGIIADGRDIGTV--VFPNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHH----HHHHhhcCCEEEEEcCcceE--EeCCCCEEEEEECCHHHHH
Confidence 11111111111100000 00112222211111 11222334589999875531 3344789999999999999
Q ss_pred HHhhhccccc-cCCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHH
Q 023731 184 ARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 184 ~R~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~l~~~I~~ 247 (278)
+|+..|.... ...+.++..+.+..+......+...|.....| ++|+++..+ ++++++.|..
T Consensus 153 ~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~---ieevv~~I~~ 215 (217)
T TIGR00017 153 KRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLS---IDEVVEKILE 215 (217)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCC---HHHHHHHHHH
Confidence 9999886432 13345666665555433333334455444444 667777654 5666666653
No 71
>PRK06762 hypothetical protein; Provisional
Probab=99.45 E-value=2.5e-12 Score=103.90 Aligned_cols=153 Identities=18% Similarity=0.217 Sum_probs=88.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 126 (278)
++.+|+|+|++||||||+|+.|++.++ .++.+++.|.+.+.+. . .++.+.....+.+.+....
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~-~~~~~i~~D~~r~~l~-------~--~~~~~~~~~~~~~~~~~~~------- 63 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRRDML-------R--VKDGPGNLSIDLIEQLVRY------- 63 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEecHHHHHHHhc-------c--ccCCCCCcCHHHHHHHHHH-------
Confidence 468999999999999999999999984 3678888776543211 0 1122223333322222211
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCc-----hHHhhhc---CeEEEEecChhhhhHHhhhccccccCCCH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-----SRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDI 198 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d-----~~~~~~~---d~~I~l~~~~e~~~~R~~~R~~~~~~~~~ 198 (278)
.+..+..+++|+.+.... ..+...+ ...||+++|.+++++|..+|.... ....
T Consensus 64 ------------------~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~-~~~~ 124 (166)
T PRK06762 64 ------------------GLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSH-EFGE 124 (166)
T ss_pred ------------------HHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccc-cCCH
Confidence 123455677787653211 1122222 389999999999999999996422 2223
Q ss_pred HHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHh
Q 023731 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~ 248 (278)
+.+...|..... ...++.+|++++.+ ++++++.|...
T Consensus 125 ~~l~~~~~~~~~----------~~~~~~~~~~~~~~---~~~v~~~i~~~ 161 (166)
T PRK06762 125 DDMRRWWNPHDT----------LGVIGETIFTDNLS---LKDIFDAILTD 161 (166)
T ss_pred HHHHHHHhhcCC----------cCCCCeEEecCCCC---HHHHHHHHHHH
Confidence 333344433221 12367777776644 45555555443
No 72
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.6e-13 Score=123.84 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=100.0
Q ss_pred hccCCc-eeee-CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--------
Q 023731 9 MIEASS-GVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR-------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~-------- 76 (278)
||+.++ ++.| ++ .+|++||| .+.++.+++|.||||||||||++.|++.+.+ .|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl---------------~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 67 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDL---------------DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV 67 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeE---------------EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEE
Confidence 566666 8999 65 57999999 9999999999999999999999999998764 23
Q ss_pred ----------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 77 ----------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 77 ----------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
+.++.++. ++..++..++..++......+..-......+.++.+...... ....++.+..+++..++
T Consensus 68 i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred CCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHH
Confidence 33333432 223344444433321111100000012233444443332222 11256666667776777
Q ss_pred cccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhhh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVRL 183 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~~ 183 (278)
..+.+++++++|+|++.+|+..+..+ . .+||+..+.+...
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 199 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAM 199 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 78889999999999999997433211 2 5777777766544
No 73
>PRK04182 cytidylate kinase; Provisional
Probab=99.45 E-value=6.5e-14 Score=114.34 Aligned_cols=169 Identities=17% Similarity=0.298 Sum_probs=84.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
++|+|+|++||||||+++.|++.+ ++.+++.|++++.... .. . .+...+.+ .... .
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~l---g~~~id~~~~~~~~~~----~~-g--------~~~~~~~~----~~~~----~ 56 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKL---GLKHVSAGEIFRELAK----ER-G--------MSLEEFNK----YAEE----D 56 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCcEecHHHHHHHHHH----Hc-C--------CCHHHHHH----Hhhc----C
Confidence 379999999999999999999998 4778886654432110 00 0 00000000 0000 0
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhc
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 208 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 208 (278)
+.+....... ..........+|++|.+..+-. .+.+++.|||++|.+.+.+|+.+|...........+.... ..
T Consensus 57 ~~~~~~~~~~---~~~~~~~~~~~Vi~g~~~~~~~--~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d-~~ 130 (180)
T PRK04182 57 PEIDKEIDRR---QLEIAEKEDNVVLEGRLAGWMA--KDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIERE-ES 130 (180)
T ss_pred chHHHHHHHH---HHHHHhcCCCEEEEEeecceEe--cCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHH-HH
Confidence 0000000000 0011112334667776543211 1236899999999999999999886432111111111111 11
Q ss_pred ccccccccc---ccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 209 VKPAFDDFI---LPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 209 ~~~~~~~~i---~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
....|..++ .+....+|++|+++..+ ++.+++.|.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~d~~idt~~~~---~~~~~~~I~~~~~ 172 (180)
T PRK04182 131 EAKRYKEYYGIDIDDLSIYDLVINTSRWD---PEGVFDIILTAID 172 (180)
T ss_pred HHHHHHHHhCCCccccccccEEEECCCCC---HHHHHHHHHHHHH
Confidence 111121111 12236899999988754 4445544444443
No 74
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.45 E-value=3.5e-13 Score=109.33 Aligned_cols=160 Identities=15% Similarity=0.224 Sum_probs=87.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH----HHHHHhh
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEKLR 121 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~ 121 (278)
++++.|+|+|++||||||+|+.|++.+ ++.+++.|.+............ +.. .....+. +.+..+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l---~~~~~d~d~~~~~~~g~~~~~~----~~~---~g~~~~~~~~~~~~~~l~ 71 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL---GYDFIDTDHLIEARAGKSIPEI----FEE---EGEAAFRELEEEVLAELL 71 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEChHHHHHHcCCCHHHH----HHH---HCHHHHHHHHHHHHHHHH
Confidence 567799999999999999999999998 5788888876532111000000 000 0000111 1111111
Q ss_pred cCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh---cCeEEEEecChhhhhHHhhhccccccC--C
Q 023731 122 HGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVEKG--R 196 (278)
Q Consensus 122 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~---~d~~I~l~~~~e~~~~R~~~R~~~~~~--~ 196 (278)
.....++..|.....+...++. ....|||+++.+.+.+|+.+|...... .
T Consensus 72 -------------------------~~~~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~ 126 (175)
T PRK00131 72 -------------------------ARHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTN 126 (175)
T ss_pred -------------------------hcCCCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCC
Confidence 1122344444333333443332 368999999999999998877642211 1
Q ss_pred CHHHHHHHHhhccccccccccccccccccEEeeCCCCcH-HHHHHHHHHHHH
Q 023731 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRT 247 (278)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~-~~~~~l~~~I~~ 247 (278)
........+.....+.| ...+|++|++++.++ ...+.|++.|+.
T Consensus 127 ~~~~~~~~~~~~~~~~~-------~~~~dl~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 127 DPKEKLRDLYEERDPLY-------EEVADITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred ChHHHHHHHHHHHHHHH-------HhhcCeEEeCCCCCHHHHHHHHHHHHHh
Confidence 22222333323222222 456899999876654 445666666653
No 75
>PRK01184 hypothetical protein; Provisional
Probab=99.45 E-value=3.4e-13 Score=110.83 Aligned_cols=169 Identities=17% Similarity=0.239 Sum_probs=87.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc--CCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH--GQA 125 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~--~~~ 125 (278)
+++|+|+|++||||||+++ +++.+ ++.+++.++.++.... .. ...... +.+.+....... +..
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~---g~~~i~~~d~lr~~~~----~~---~~~~~~----~~~g~~~~~~~~~~~~~ 65 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREM---GIPVVVMGDVIREEVK----KR---GLEPTD----ENIGKVAIDLRKELGMD 65 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHc---CCcEEEhhHHHHHHHH----Hc---CCCCCc----HHHHHHHHHHHHHHChH
Confidence 4689999999999999998 55555 5888888765532210 00 010000 011111111000 000
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc-hHHhhhcC---eEEEEecChhhhhHHhhhccccccCCCHHHH
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD-SRVRELMN---MKIFVDTDADVRLARRIRRDTVEKGRDIATV 201 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d-~~~~~~~d---~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~ 201 (278)
.+...... .........+++||.....+ ..+.+.++ ..|||+++.+++.+|+..|+....+.+.+.+
T Consensus 66 ----~~~~~~~~-----~i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~ 136 (184)
T PRK01184 66 ----AVAKRTVP-----KIREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEEL 136 (184)
T ss_pred ----HHHHHHHH-----HHHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHH
Confidence 00000000 00112356789999733211 13334445 8999999999999999998643322334444
Q ss_pred HHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHh
Q 023731 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~ 248 (278)
..+........ ..+....||++|+|+++ ++.+.++++++
T Consensus 137 ~~r~~~q~~~~----~~~~~~~ad~vI~N~~~----~~~l~~~v~~~ 175 (184)
T PRK01184 137 EERDERELSWG----IGEVIALADYMIVNDST----LEEFRARVRKL 175 (184)
T ss_pred HHHHHHHhccC----HHHHHHhcCEEEeCCCC----HHHHHHHHHHH
Confidence 44332211000 22235789999998864 34444444443
No 76
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.44 E-value=8.8e-13 Score=107.28 Aligned_cols=156 Identities=19% Similarity=0.260 Sum_probs=89.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH----HHHHHhhcC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEKLRHG 123 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~~~ 123 (278)
+..|+|+|++||||||+++.|++.+ +..+++.|............. .|...+ ...+. +.+..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l---~~~~vd~D~~i~~~~g~~i~~----~~~~~g---~~~fr~~e~~~l~~l--- 70 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSDQEIEKRTGADIGW----VFDVEG---EEGFRDREEKVINEL--- 70 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc---CCcEEECCchHHHHhCcCHhH----HHHHhC---HHHHHHHHHHHHHHH---
Confidence 4569999999999999999999997 578888887442211100000 011000 01111 111111
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH---HhhhcCeEEEEecChhhhhHHhhhccccc--cCCCH
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARRIRRDTVE--KGRDI 198 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~---~~~~~d~~I~l~~~~e~~~~R~~~R~~~~--~~~~~ 198 (278)
.....+++..|......+. .....+.+|||+++.+++++|+..+...+ .+...
T Consensus 71 ----------------------~~~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~ 128 (172)
T PRK05057 71 ----------------------TEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDP 128 (172)
T ss_pred ----------------------HhCCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCH
Confidence 1122344445544443443 33456799999999999999987654322 12223
Q ss_pred HHHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHh
Q 023731 199 ATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~ 248 (278)
.+....+.....|.| .+.||++|++++.+. +++++.|.+.
T Consensus 129 ~~~~~~l~~~R~~~Y-------~~~Ad~~idt~~~s~---~ei~~~i~~~ 168 (172)
T PRK05057 129 REVLEALANERNPLY-------EEIADVTIRTDDQSA---KVVANQIIHM 168 (172)
T ss_pred HHHHHHHHHHHHHHH-------HhhCCEEEECCCCCH---HHHHHHHHHH
Confidence 344555555556665 567999999876554 4444444433
No 77
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=4.4e-13 Score=115.33 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=113.3
Q ss_pred eeeeCC-----c-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 023731 15 GVHFSG-----F-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH 87 (278)
Q Consensus 15 ~~~~~~-----~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~ 87 (278)
+|.|.+ + +|+|||+ .+++|.+.||+|.||||||||.|++...-.| .|..++++++...
T Consensus 8 sK~~~~~~~~~~~al~~vsL---------------~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 8 SKTFGQTGTGTVTALDDVSL---------------EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 (339)
T ss_pred eeeeccCCCCceeeeccceE---------------EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence 566765 3 6999999 9999999999999999999999999987654 5678888865442
Q ss_pred CCCHHHH---HHccccCCCCCCccc------------------H----HHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCC
Q 023731 88 NLTEQEL---ARVHEYNFDHPDAFD------------------T----EKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNV 140 (278)
Q Consensus 88 ~~~~~~~---~~~~~~~~~~~~~~d------------------~----~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~ 140 (278)
++..+. +....+.|++++-+. . .+..+.++.+...... .+| ..+.+..+|+.
T Consensus 73 -l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVa 151 (339)
T COG1135 73 -LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVA 151 (339)
T ss_pred -CChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHH
Confidence 333333 333445566654221 1 2233444443333222 334 66777778888
Q ss_pred CCccccCCCcEEEEcccccCCchH-----------HhhhcCeEEEEecChhhhhHHhhhcc
Q 023731 141 FPARRVNPSDVILLEGILVFHDSR-----------VRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~-----------~~~~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
.++..+..|++++.|++.+.+||+ +...++++|.+-.+.....+++..|=
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rV 212 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV 212 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhh
Confidence 888888999999999999999984 33445788888888888888887664
No 78
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.43 E-value=2.7e-13 Score=123.04 Aligned_cols=164 Identities=19% Similarity=0.205 Sum_probs=102.4
Q ss_pred hhhhccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE----
Q 023731 6 VVDMIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV---- 78 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~---- 78 (278)
|.-||+-++ ++.|+++ +|+++|| .+.++.+++|.|+||||||||+++|++.+.+ .|..
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl---------------~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g 75 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDL---------------TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDG 75 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEE---------------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Confidence 444677767 9999885 5999999 9999999999999999999999999998765 2333
Q ss_pred --------------EEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 79 --------------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 79 --------------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
++.++. ++..++..++..++......+..-......+.++.+...... ....++.+..+++..
T Consensus 76 ~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaL 155 (375)
T PRK09452 76 QDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAI 155 (375)
T ss_pred EECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 333332 233334444333221111000000011233334433332222 112556666667666
Q ss_pred CccccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhhhH
Q 023731 142 PARRVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVRLA 184 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~~~ 184 (278)
++..+.+++++++|+|++.+|...+..+ + .+||++.+.+..+.
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 210 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 6777889999999999999997544222 3 56788887776443
No 79
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=2.9e-13 Score=113.83 Aligned_cols=135 Identities=14% Similarity=0.127 Sum_probs=80.3
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC-------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------- 85 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~------- 85 (278)
++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|...++..+.
T Consensus 7 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 7 SKTYGSVRALDDLSL---------------TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71 (213)
T ss_pred EEEeCCeeeecceeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhh
Confidence 788877 57999999 9999999999999999999999999998754 23333333221
Q ss_pred ------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcE
Q 023731 86 ------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 86 ------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
+...+..++..+....+........+...+.+..+........ ..++.+..++...++..+.++++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1112222211111000000000001122333443332221111 24555555665556667789999
Q ss_pred EEEcccccCCchH
Q 023731 152 ILLEGILVFHDSR 164 (278)
Q Consensus 152 iiidg~~~~~d~~ 164 (278)
+++|+|++.+|+.
T Consensus 152 lllDEPt~~LD~~ 164 (213)
T cd03259 152 LLLDEPLSALDAK 164 (213)
T ss_pred EEEcCCcccCCHH
Confidence 9999999999875
No 80
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.43 E-value=2.1e-13 Score=114.91 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=83.3
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
||+.++ +++|++ ..|+++|| .+.++.+++|.|+||||||||++.|++.+.+ .|...++..
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~ 65 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNF---------------HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQ 65 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE
Confidence 455666 888954 47999999 9999999999999999999999999998764 343444332
Q ss_pred CCCCCCCHH---HHHHccccCCCCCCcc------------------c----HHHHHHHHHHhhcCCCcc--ccccCCcCC
Q 023731 84 SFYHNLTEQ---ELARVHEYNFDHPDAF------------------D----TEKLLSSMEKLRHGQAVD--IPNYDFKSY 136 (278)
Q Consensus 84 ~~~~~~~~~---~~~~~~~~~~~~~~~~------------------d----~~~~~~~l~~~~~~~~i~--~~~~~~~~~ 136 (278)
+... .... .......+.++++..+ . .+...+.++.+....... ...++.+..
T Consensus 66 ~~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 144 (216)
T TIGR00960 66 DLTR-LRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQ 144 (216)
T ss_pred ehhh-cChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 2110 0000 0011111122221111 0 112223333332222111 124445555
Q ss_pred cCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 137 KNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 137 ~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
++...++..+.+++++++|+|++.+|+..
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~ 173 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPEL 173 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 55555566778999999999999998753
No 81
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.43 E-value=3.9e-13 Score=122.87 Aligned_cols=141 Identities=21% Similarity=0.283 Sum_probs=93.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV-------- 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~-------- 77 (278)
||+..+ ++.|++ ..|++||| .+.++.+++|.||+|||||||.+.|++.+.+ .|.
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~---------------~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDL---------------SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEE---------------EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEc
Confidence 677777 999998 46999999 9999999999999999999999999998764 232
Q ss_pred ------------EEEcCCC-CCCCCCHHHHHHccccC----CCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcC
Q 023731 78 ------------VLVNQDS-FYHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKN 138 (278)
Q Consensus 78 ------------~~i~~D~-~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~ 138 (278)
.++.++. ++..++..++..++.+. |......+.+...+.++.+....... ...++.+..++
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQR 147 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQR 147 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 3333332 22334444444433221 11111122334455555554433222 23555666666
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|.+.+|+.
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~ 173 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDIN 173 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHH
Confidence 66667778899999999999999973
No 82
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.43 E-value=2.4e-13 Score=114.39 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=82.6
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+.++ ++.|+ + ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~---------------~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~ 65 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSL---------------HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGED 65 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 355555 88894 4 57999999 9999999999999999999999999998753 3434443322
Q ss_pred CCCCCCHH---HHHHccccCCCCCCcc------------------c----HHHHHHHHHHhhcCCCccc--cccCCcCCc
Q 023731 85 FYHNLTEQ---ELARVHEYNFDHPDAF------------------D----TEKLLSSMEKLRHGQAVDI--PNYDFKSYK 137 (278)
Q Consensus 85 ~~~~~~~~---~~~~~~~~~~~~~~~~------------------d----~~~~~~~l~~~~~~~~i~~--~~~~~~~~~ 137 (278)
... .... .......+.++++..+ . .+.+.+.++.+........ ..++.+..+
T Consensus 66 ~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (214)
T TIGR02673 66 VNR-LRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQ 144 (214)
T ss_pred ccc-CCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHH
Confidence 210 1100 0001111112211111 1 1122233333322211111 244455555
Q ss_pred CCCCCccccCCCcEEEEcccccCCchHH
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+....+..+.+++++++|+|++.+|+..
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~ 172 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDL 172 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 5555566778999999999999998753
No 83
>PRK06217 hypothetical protein; Validated
Probab=99.42 E-value=1.6e-12 Score=106.80 Aligned_cols=106 Identities=20% Similarity=0.344 Sum_probs=71.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
++.|+|+|++||||||+++.|++.+ ++.+++.|.+++.-.. ..+..... .+...+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l---~~~~~~~D~~~~~~~~--------~~~~~~~~--~~~~~~~~~~-------- 59 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERL---DIPHLDTDDYFWLPTD--------PPFTTKRP--PEERLRLLLE-------- 59 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCcEEEcCceeeccCC--------CCccccCC--HHHHHHHHHH--------
Confidence 3579999999999999999999998 5889999998842110 00100000 0111111110
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccc
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
.+...+.+|+||.+..+...+...+|.+|||++|.+++++|+.+|..
T Consensus 60 -----------------~~~~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 60 -----------------DLRPREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred -----------------HHhcCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcc
Confidence 11112347888877654455667799999999999999999999874
No 84
>PRK08118 topology modulation protein; Reviewed
Probab=99.42 E-value=2e-13 Score=110.49 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=68.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
+.|.|+|++||||||+|+.|++.+ ++.+++.|..+... .|. ....+.+.+.+..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l---~~~~~~lD~l~~~~-----------~w~---~~~~~~~~~~~~~~~------- 57 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL---NIPVHHLDALFWKP-----------NWE---GVPKEEQITVQNELV------- 57 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCceecchhhccc-----------CCc---CCCHHHHHHHHHHHh-------
Confidence 469999999999999999999998 47888888765210 011 011111222222111
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
..+-+|+||.+...-....+.+|.+|||++|.++++.|+++|.
T Consensus 58 -------------------~~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 58 -------------------KEDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred -------------------cCCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHH
Confidence 1124899998774334445679999999999999999999985
No 85
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.41 E-value=4.3e-13 Score=118.88 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=85.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE-----
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV----- 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i----- 80 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl---------------~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSF---------------TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 466666 899988 46999999 9999999999999999999999999998754 233333
Q ss_pred --------------cCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC--ccccccCCcCCcCCCCCc
Q 023731 81 --------------NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 81 --------------~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~~~~ 143 (278)
.++. ++..++..++..+....+.....-..+...+.++.+..... .....++.+..++...++
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 2221 12223332222110000000000000112223332222211 112245555556655566
Q ss_pred cccCCCcEEEEcccccCCchHHh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
..+.+++++++|+|++.+|+...
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~ 171 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHAR 171 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHH
Confidence 67789999999999999997533
No 86
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.41 E-value=4.5e-13 Score=121.68 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=98.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV-------- 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~-------- 77 (278)
+|+.++ ++.|++ ..|+++|| .+.++.+++|.|+||||||||++.|++.+.+ .|.
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINL---------------DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 456666 899988 46999999 9999999999999999999999999998754 232
Q ss_pred ----------EEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023731 78 ----------VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 78 ----------~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
.++.++. ++..++..++..++......+..-..+...+.++.+...... ....++.+..++...++.
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHH
Confidence 3333332 222334444333221111100000012233444444332211 112555666666666677
Q ss_pred ccCCCcEEEEcccccCCchHHhh--------h---cC-eEEEEecChhhh
Q 023731 145 RVNPSDVILLEGILVFHDSRVRE--------L---MN-MKIFVDTDADVR 182 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~--------~---~d-~~I~l~~~~e~~ 182 (278)
.+.+++++++|+|++.+|+..+. . .+ .+|++..+.+..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~ 197 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 78899999999999999975432 1 12 567777776643
No 87
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.41 E-value=4.4e-13 Score=112.57 Aligned_cols=135 Identities=18% Similarity=0.197 Sum_probs=79.7
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLT 90 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~ 90 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+... ..
T Consensus 6 ~~~~~~~~~~il~~vs~---------------~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~ 69 (211)
T cd03225 6 SFSYPDGARPALDDISL---------------TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK-LS 69 (211)
T ss_pred EEecCCCCeeeecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-CC
Confidence 778876 46999999 9999999999999999999999999998754 3434443322110 11
Q ss_pred HHHHHHccccCCCCCC-------------------ccc----HHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccc
Q 023731 91 EQELARVHEYNFDHPD-------------------AFD----TEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~-------------------~~d----~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~ 145 (278)
.........|.++++. .++ .....+.++.+....... ...++.+..++....+..
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 70 LKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred HHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1111111111111110 011 112223333332221111 124555555565555667
Q ss_pred cCCCcEEEEcccccCCchHH
Q 023731 146 VNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~ 165 (278)
+.+++++++|+|++.+|+..
T Consensus 150 ~~~p~llllDEPt~~LD~~~ 169 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAG 169 (211)
T ss_pred hcCCCEEEEcCCcccCCHHH
Confidence 78999999999999998753
No 88
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=5e-13 Score=112.18 Aligned_cols=136 Identities=13% Similarity=0.151 Sum_probs=81.8
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC----------------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR---------------- 76 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~---------------- 76 (278)
++.|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+++ .|
T Consensus 7 ~~~~~~~~~l~~v~~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 7 TKRFGRVTALDDISF---------------SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71 (210)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHcc
Confidence 778876 57999999 9999999999999999999999999998753 22
Q ss_pred EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEE
Q 023731 77 VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 77 ~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
+.++.++. ++...+..++..+....++.+.....+...+.++.+...... ....++.+..++....+..+.++++++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 23333332 222233333322211111100001112233344443322111 112455555555555566778999999
Q ss_pred EcccccCCchHH
Q 023731 154 LEGILVFHDSRV 165 (278)
Q Consensus 154 idg~~~~~d~~~ 165 (278)
+|+|.+.+|+..
T Consensus 152 lDEP~~~LD~~~ 163 (210)
T cd03269 152 LDEPFSGLDPVN 163 (210)
T ss_pred EeCCCcCCCHHH
Confidence 999999998753
No 89
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=4.8e-13 Score=105.54 Aligned_cols=153 Identities=12% Similarity=0.173 Sum_probs=99.6
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHHccc
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHE 99 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~~ 99 (278)
..|+++|| ...+|..|+|+||||||||||.|.++...++ .|..+..+.++- .+....+.....
T Consensus 17 ~il~~isl---------------~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs-~~~pea~Rq~Vs 80 (223)
T COG4619 17 KILNNISL---------------SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS-TLKPEAYRQQVS 80 (223)
T ss_pred eeecceee---------------eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc-ccChHHHHHHHH
Confidence 46999999 9999999999999999999999999998765 344555554432 233332221111
Q ss_pred cC------CC-------------CCCcccHHHHHHHHHHhhcCCCc-cc--cccCCcCCcCCCCCccccCCCcEEEEccc
Q 023731 100 YN------FD-------------HPDAFDTEKLLSSMEKLRHGQAV-DI--PNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (278)
Q Consensus 100 ~~------~~-------------~~~~~d~~~~~~~l~~~~~~~~i-~~--~~~~~~~~~~~~~~~~~~~~~~iiiidg~ 157 (278)
|+ |+ +...+|.+.+...|..+..+..+ .. ...+.+..++....+.....++++++|++
T Consensus 81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 11 11 12346778888888887776543 22 24444444554444555678999999999
Q ss_pred ccCCchHHh--------hhc----CeEEEEecChhhhhHHhhhc
Q 023731 158 LVFHDSRVR--------ELM----NMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 158 ~~~~d~~~~--------~~~----d~~I~l~~~~e~~~~R~~~R 189 (278)
.+.+|+... .++ =.++||+.+.+...+-..++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~ 204 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKV 204 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheE
Confidence 998886432 222 15678888887755444333
No 90
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.41 E-value=5.2e-13 Score=119.84 Aligned_cols=140 Identities=17% Similarity=0.184 Sum_probs=87.2
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+-.+ ++.|++ .+|+|||| .+.++.+++|.|+||||||||++.|++.+.+ .|...++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl---------------~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~ 65 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSL---------------HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVD 65 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 455566 888952 46999999 9999999999999999999999999998865 3445555
Q ss_pred CCCCCCCCCHHHH---HHccccCCCCCCcc------------------c----HHHHHHHHHHhhcCCCc--cccccCCc
Q 023731 82 QDSFYHNLTEQEL---ARVHEYNFDHPDAF------------------D----TEKLLSSMEKLRHGQAV--DIPNYDFK 134 (278)
Q Consensus 82 ~D~~~~~~~~~~~---~~~~~~~~~~~~~~------------------d----~~~~~~~l~~~~~~~~i--~~~~~~~~ 134 (278)
..+.. .++.... .....+.|+++..+ + .+...+.++.+...... ....++.+
T Consensus 66 G~~i~-~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgG 144 (343)
T TIGR02314 66 GQDLT-TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGG 144 (343)
T ss_pred CEECC-cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 43322 1111111 11112223222111 1 11223334433322211 11255556
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++...++..+.+++++++|+|++.+|+.
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~ 174 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 666666667778899999999999999974
No 91
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=4.8e-13 Score=120.44 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=85.2
Q ss_pred hccCCc-eeeeC----C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFS----G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~----~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+..+ ++.|+ + .+|+++|| .+.+|.+++|.|+||||||||++.|++.+.+ .|...++
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl---------------~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~ 65 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSL---------------HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 456666 88997 2 47999999 9999999999999999999999999999864 3444444
Q ss_pred CCCCCCCCCHHHH---HHccccCCCCCCcc------------------cH----HHHHHHHHHhhcCCCccc--cccCCc
Q 023731 82 QDSFYHNLTEQEL---ARVHEYNFDHPDAF------------------DT----EKLLSSMEKLRHGQAVDI--PNYDFK 134 (278)
Q Consensus 82 ~D~~~~~~~~~~~---~~~~~~~~~~~~~~------------------d~----~~~~~~l~~~~~~~~i~~--~~~~~~ 134 (278)
..+.. ....... .....+.++++..+ .. +...+.++.+........ ..++.+
T Consensus 66 g~~i~-~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgG 144 (343)
T PRK11153 66 GQDLT-ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGG 144 (343)
T ss_pred CEECC-cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 43221 1111110 11112222222111 11 122233333322221111 245555
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++...++..+.+++++++|+|++.+|+.
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~ 174 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 556655666677899999999999999974
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=4.7e-13 Score=115.72 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=85.7
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEE------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVL------ 79 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~------ 79 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 65 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINL---------------TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 455556 888987 56999999 9999999999999999999999999998754 23333
Q ss_pred ---------EcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccC
Q 023731 80 ---------VNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 80 ---------i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~ 147 (278)
+.++. ++...+..++..+.....+.......+...+.+..+........ ..++.+..++....+..+.
T Consensus 66 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 66 EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred CCCCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 33332 22223333332221111110000011223344444433221111 2445555555555566778
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|+|++.+|+.
T Consensus 146 ~p~lllLDEPt~~LD~~ 162 (255)
T PRK11248 146 NPQLLLLDEPFGALDAF 162 (255)
T ss_pred CCCEEEEeCCCccCCHH
Confidence 99999999999999974
No 93
>PRK13949 shikimate kinase; Provisional
Probab=99.41 E-value=3.6e-13 Score=109.18 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=83.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
..|+|+|++||||||+++.|++.+ ++.+++.|.++.......... .|.. +..+.+.+....+..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l---~~~~id~D~~i~~~~~~~~~~----~~~~---~g~~~fr~~e~~~l~------ 65 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL---GLSFIDLDFFIENRFHKTVGD----IFAE---RGEAVFRELERNMLH------ 65 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCeecccHHHHHHHCccHHH----HHHH---hCHHHHHHHHHHHHH------
Confidence 469999999999999999999998 588999987552211000000 0110 111111111111100
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCch---HHhhhcCeEEEEecChhhhhHHhhhcc-ccc--cCCCHHH--
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS---RVRELMNMKIFVDTDADVRLARRIRRD-TVE--KGRDIAT-- 200 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~---~~~~~~d~~I~l~~~~e~~~~R~~~R~-~~~--~~~~~~~-- 200 (278)
.......++|..|.+....+ ...+..+++|||+++.+..++|+..+. +.+ .+...+.
T Consensus 66 ---------------~l~~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~ 130 (169)
T PRK13949 66 ---------------EVAEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELL 130 (169)
T ss_pred ---------------HHHhCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHH
Confidence 01112345666776655443 234556899999999999999986432 111 1111222
Q ss_pred -HHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023731 201 -VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 201 -~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~ 246 (278)
..........|.| .+ ||++|+.++.++ ++++++|.
T Consensus 131 ~~i~~l~~~R~~~Y-------~~-ad~~id~~~~~~---~e~~~~I~ 166 (169)
T PRK13949 131 DFIIEALEKRAPFY-------RQ-AKIIFNADKLED---ESQIEQLV 166 (169)
T ss_pred HHHHHHHHHHHHHH-------Hh-CCEEEECCCCCH---HHHHHHHH
Confidence 2222222233333 34 899998776543 44444443
No 94
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.40 E-value=7.3e-13 Score=128.78 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=114.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC--
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-- 124 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-- 124 (278)
+.++|+|.||+||||||+++.|++.| ++.+++.+.+|+..+...... ...+ -|.+.+.+.+..+...-
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~ 510 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEAL---GYHYLDSGALYRLTALAALRA--GVAL-----DDEAAIAALARGLPVRFEG 510 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHh---CCeEecHHHhhhHHHHHHHHc--CcCC-----CCHHHHHHHHhcCCeeecC
Confidence 45689999999999999999999999 588999999997654322221 1111 12223333332211100
Q ss_pred -Cc------------------------cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecCh
Q 023731 125 -AV------------------------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDA 179 (278)
Q Consensus 125 -~i------------------------~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~ 179 (278)
.+ ..|.++...... +..+....-+|+||.-.+. .+.+..|++|||+++.
T Consensus 511 ~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~----qr~~~~~~~~v~eGRdigt--vv~p~a~~kifl~a~~ 584 (661)
T PRK11860 511 DRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLAL----QRSFRRLPGLVADGRDMGT--VIFPDAALKVFLTASA 584 (661)
T ss_pred CeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHH----HHHHhhCCCEEEECCCCcc--EECCCCCeEEEEECCh
Confidence 00 111111111111 1122233358999987663 3455678999999999
Q ss_pred hhhhHHhhhccccc-cCCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 180 DVRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 180 e~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
++|.+|+.+..... ...+.+++.++...+......+.+.|.+...| ++|||+..+ ++++++.|.+.+
T Consensus 585 ~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~---~~~v~~~i~~~i 653 (661)
T PRK11860 585 EARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLT---IEQAVAQVLDWW 653 (661)
T ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCC---HHHHHHHHHHHH
Confidence 99999998743211 23467788877777777777888888877766 778887654 455555555444
No 95
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=2.4e-13 Score=113.42 Aligned_cols=141 Identities=18% Similarity=0.268 Sum_probs=87.2
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~D~~ 85 (278)
|++.++ +++|||+ +++|||| ++.++.+++|+||+||||||+-+.+++.+.|. |...+...+.
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl---------------~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSL---------------EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceeecCCEEEEeceeE---------------EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence 466666 9999996 5999999 99999999999999999999999999999874 4455555432
Q ss_pred C----------------------CCCCHHHHHHcccc-------CCCCCCcc-cH----HHHHHHHHHhhcCCCcccc--
Q 023731 86 Y----------------------HNLTEQELARVHEY-------NFDHPDAF-DT----EKLLSSMEKLRHGQAVDIP-- 129 (278)
Q Consensus 86 ~----------------------~~~~~~~~~~~~~~-------~~~~~~~~-d~----~~~~~~l~~~~~~~~i~~~-- 129 (278)
- +.++..++...+.. .+..+.+. +. +...+.|+.+........+
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 2 22222222111100 01111110 11 1222223333332222112
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++++...++..++....+++++++|+|.++..+.
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~ 183 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHH
Confidence 34445555555556677899999999999998764
No 96
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=5.1e-13 Score=112.92 Aligned_cols=136 Identities=14% Similarity=0.085 Sum_probs=82.5
Q ss_pred eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE-----------
Q 023731 15 GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV----------- 77 (278)
Q Consensus 15 ~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~----------- 77 (278)
++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|.
T Consensus 7 ~~~~~~~~~~~~il~~vs~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 71 (220)
T cd03293 7 SKTYGGGGGAVTALEDISL---------------SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP 71 (220)
T ss_pred EEEcCCCCcceEEEeceeE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc
Confidence 778876 46999999 9999999999999999999999999998753 232
Q ss_pred ----EEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCc
Q 023731 78 ----VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 78 ----~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
.++.++. ++...+..++..+.............+...+.++.+........ ..++.+..++...++..+.+++
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2333332 22223333332221110110000111223344444333221111 2455555556555666778999
Q ss_pred EEEEcccccCCchHH
Q 023731 151 VILLEGILVFHDSRV 165 (278)
Q Consensus 151 iiiidg~~~~~d~~~ 165 (278)
++++|+|++.+|+..
T Consensus 152 lllLDEPt~~LD~~~ 166 (220)
T cd03293 152 VLLLDEPFSALDALT 166 (220)
T ss_pred EEEECCCCCCCCHHH
Confidence 999999999998753
No 97
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.40 E-value=6.1e-13 Score=117.76 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=85.8
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE------
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV------ 80 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i------ 80 (278)
++.++ +++|++ .+|+|||| .+.+|.+++|.||+||||||+.+.|++.+.+ .|...+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~---------------~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSF---------------EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEE---------------EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc
Confidence 45556 899987 57999999 9999999999999999999999999998754 232333
Q ss_pred -------------cCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023731 81 -------------NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 81 -------------~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
.++. ++..++..++..+....++.+..-..+...+.++.+...... ....++.+..++...++.
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 3321 222233333222111111100000011233334433322211 223455555566656667
Q ss_pred ccCCCcEEEEcccccCCchHH
Q 023731 145 RVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+.+++++++|+|...+|+..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~ 168 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQ 168 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHH
Confidence 788999999999999999753
No 98
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=5.8e-13 Score=113.56 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=82.9
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+..+ ++.|++ ..|+++|| ++.++.+++|+|++|||||||++.|++.+++ .|...++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSL---------------SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 455566 888975 46999999 9999999999999999999999999999864 3444444
Q ss_pred CCCCCCCCCHHH---HHHccccCCCCCCcc------------------c----HHHHHHHHHHhhcCCCcc--ccccCCc
Q 023731 82 QDSFYHNLTEQE---LARVHEYNFDHPDAF------------------D----TEKLLSSMEKLRHGQAVD--IPNYDFK 134 (278)
Q Consensus 82 ~D~~~~~~~~~~---~~~~~~~~~~~~~~~------------------d----~~~~~~~l~~~~~~~~i~--~~~~~~~ 134 (278)
..+... ..... ......+.++.+..+ . .+...+.++.+....... ...++.+
T Consensus 66 g~~~~~-~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 144 (233)
T cd03258 66 GTDLTL-LSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGG 144 (233)
T ss_pred CEEccc-CCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHH
Confidence 322211 11100 011111112221111 1 111222333332221111 1234445
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++....+..+.+++++++|+|++.+|+.
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHH
Confidence 555555556677899999999999999875
No 99
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.40 E-value=5.1e-13 Score=118.31 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=80.7
Q ss_pred eeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC--------
Q 023731 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF-------- 85 (278)
Q Consensus 16 ~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~-------- 85 (278)
+.|++ .+|++||| .+.+|.+++|.||+|||||||+++|++.+.+ .|...++..+.
T Consensus 1 k~y~~~~~l~~vs~---------------~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 65 (302)
T TIGR01188 1 KVYGDFKAVDGVNF---------------KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVR 65 (302)
T ss_pred CeeCCeeEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHH
Confidence 46776 47999999 9999999999999999999999999998764 33344433222
Q ss_pred ------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcE
Q 023731 86 ------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 86 ------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
+..++..++..+....++.+.....+...+.++.+...... ....++.+..++...++..+.++++
T Consensus 66 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred hhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 12222222211110000000000011233334443332211 1234555556666666677889999
Q ss_pred EEEcccccCCchHH
Q 023731 152 ILLEGILVFHDSRV 165 (278)
Q Consensus 152 iiidg~~~~~d~~~ 165 (278)
+++|+|++.+|+..
T Consensus 146 llLDEPt~gLD~~~ 159 (302)
T TIGR01188 146 LFLDEPTTGLDPRT 159 (302)
T ss_pred EEEeCCCcCCCHHH
Confidence 99999999999753
No 100
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=4.3e-13 Score=111.08 Aligned_cols=142 Identities=13% Similarity=0.196 Sum_probs=99.2
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------ 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------------ 74 (278)
|++.++ .++||+. +|.+||| ..+++.+++|.|++||||||+.+.|++..++
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl---------------~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSL---------------EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeecccceeEEeeeee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeec
Confidence 667777 9999995 5999999 9999999999999999999999999998764
Q ss_pred ----------CCEEEEcC-CCCCCCCCHHHHHHccccCCCC--CCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCC
Q 023731 75 ----------QRVVLVNQ-DSFYHNLTEQELARVHEYNFDH--PDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVF 141 (278)
Q Consensus 75 ----------~~~~~i~~-D~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 141 (278)
.|+.++.+ ...|..++..++..++.+.... ...-+.+...+.+-.++......--..+.+..+.+..
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAi 147 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAI 147 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHH
Confidence 34555555 3566777777777776654432 1111133333333333322222223455555565556
Q ss_pred CccccCCCcEEEEcccccCCchHH
Q 023731 142 PARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+..+..++++++|+|..++-|.+
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~i 171 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKI 171 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHH
Confidence 677789999999999999987654
No 101
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.39 E-value=3.5e-13 Score=109.11 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=87.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
++|+|+|++||||||+|+.|++.+ ++.+++.|++++.... .. + .+...+.... ...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l---g~~~~~~~~~~~~~~~----~~-----g----~~~~~~~~~~---~~~----- 56 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL---SLKLISAGDIFRELAA----KM-----G----LDLIEFLNYA---EEN----- 56 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCceecHHHHHHHHHH----Hc-----C----CCHHHHHHHH---hcC-----
Confidence 479999999999999999999988 5788888765533211 00 0 0000000000 000
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhc
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 208 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 208 (278)
+.+....... ........+.+|++|.+..+. +...+|+.|||++|.+++.+|+.+|++.........+..+ ...
T Consensus 57 ~~~~~~~~~~---i~~~~~~~~~~Vi~g~~~~~~--~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~-d~~ 130 (171)
T TIGR02173 57 PEIDKKIDRR---IHEIALKEKNVVLESRLAGWI--VREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIER-EES 130 (171)
T ss_pred cHHHHHHHHH---HHHHHhcCCCEEEEeccccee--ecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHH-HHH
Confidence 0000000000 001111234567788765432 2345789999999999999999999754333222222211 111
Q ss_pred cccccccccc---cccccccEEeeCCCCcHHHHHHHHHHHH
Q 023731 209 VKPAFDDFIL---PTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 209 ~~~~~~~~i~---~~~~~aD~iI~n~~~~~~~~~~l~~~I~ 246 (278)
....|..++. -.....|++|+++.-+. ++ ++.|.
T Consensus 131 ~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~---~~-~~~i~ 167 (171)
T TIGR02173 131 EKRRYLKFYGIDIDDLSIYDLVINTSNWDP---NN-VDIIL 167 (171)
T ss_pred HHHHHHHHhCCCccccccccEEEECCCCCH---HH-HHHHH
Confidence 1112222221 13467899999887553 44 44444
No 102
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=9e-13 Score=112.86 Aligned_cols=142 Identities=16% Similarity=0.143 Sum_probs=86.6
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC----------
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR---------- 76 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~---------- 76 (278)
|+..+ ++.|++ .+|++||| ++.++.+++|.|++|||||||++.|++.+.+ .|
T Consensus 3 l~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSL---------------DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 55556 889987 56999999 9999999999999999999999999998753 22
Q ss_pred --------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCccc--cccCCcCCcCCCC
Q 023731 77 --------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVF 141 (278)
Q Consensus 77 --------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~ 141 (278)
+.++.++. ++...+..++..+...........+. +...+.++.+........ ..++.+..++...
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence 23333332 22233443333221110000000011 122333444333221111 2455555566555
Q ss_pred CccccCCCcEEEEcccccCCchHHh
Q 023731 142 PARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
.+..+.+++++++|+|++.+|+...
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5667789999999999999987533
No 103
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.39 E-value=7.8e-13 Score=111.76 Aligned_cols=136 Identities=17% Similarity=0.115 Sum_probs=79.7
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC----
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY---- 86 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~---- 86 (278)
++.|++ ..|++||| .+.++.+++|+|+||||||||++.|++.+.+ .|...++..+..
T Consensus 7 ~~~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~ 71 (220)
T cd03263 7 TKTYKKGTKPAVDDLSL---------------NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71 (220)
T ss_pred EEEeCCCCceeecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchH
Confidence 778865 57999999 9999999999999999999999999998754 333333332211
Q ss_pred ----------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCC
Q 023731 87 ----------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 87 ----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~ 148 (278)
...+..++..+....+..+.....+...+.++.+...... ....++.+..++....+..+.+
T Consensus 72 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 72 AARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred HHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 1122222111110000000000011222333333222111 1124455555555555667789
Q ss_pred CcEEEEcccccCCchHH
Q 023731 149 SDVILLEGILVFHDSRV 165 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~~ 165 (278)
++++++|+|++.+|+..
T Consensus 152 p~llllDEP~~~LD~~~ 168 (220)
T cd03263 152 PSVLLLDEPTSGLDPAS 168 (220)
T ss_pred CCEEEECCCCCCCCHHH
Confidence 99999999999998753
No 104
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.39 E-value=9.5e-13 Score=111.59 Aligned_cols=188 Identities=19% Similarity=0.251 Sum_probs=99.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC---
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--- 124 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~--- 124 (278)
+.+|+|.|++||||||+++.|++.+ ++.+++.+.+|+.+...... ..... -+.+.+.+.+..+....
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~---~~~~~~~~~~~r~~~~~~~~--~g~~~-----~~~~~~~~~~~~~~~~~~~~ 73 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL---GFHYLDTGAMYRAVALAALR--HGVDL-----EDEEALVALAAHLDISFESD 73 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh---CCCcccCchhHHHHHHHHHH--cCCCC-----CCHHHHHHHHhcCCeEEecC
Confidence 4789999999999999999999998 58889999988653321111 11111 11112222222111100
Q ss_pred ----Cccccc------------------cCC--cCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChh
Q 023731 125 ----AVDIPN------------------YDF--KSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDAD 180 (278)
Q Consensus 125 ----~i~~~~------------------~~~--~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e 180 (278)
.+.... +.. .....+...+..+...+.+|++|..... .+.+..++.|||++|.+
T Consensus 74 ~~~~~~~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~--~vl~~a~~~ifl~a~~e 151 (225)
T PRK00023 74 PGGQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGT--VVFPDAELKIFLTASAE 151 (225)
T ss_pred CCcceEEECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChhe--EEeCCCCEEEEEECCHH
Confidence 000000 000 0000000001112234468999986432 23344789999999999
Q ss_pred hhhHHhhhccccc-cCCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcH-HHHHHHHHHHHH
Q 023731 181 VRLARRIRRDTVE-KGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNH-VAIDLIVQHIRT 247 (278)
Q Consensus 181 ~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~-~~~~~l~~~I~~ 247 (278)
.+.+|+.++.... .+.+.++..+....+......+++.|....+| ++|+++..+. ..++.+.+.|+.
T Consensus 152 ~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~ 221 (225)
T PRK00023 152 ERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVEE 221 (225)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9988877664221 13344444444433333333444566566665 8888876443 344555555543
No 105
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.39 E-value=9.8e-13 Score=112.05 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=79.3
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC-------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------- 85 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~------- 85 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 7 SKRYGKRKVVNGVSL---------------SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71 (232)
T ss_pred EEEeCCEEeecccee---------------EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhH
Confidence 788887 57999999 9999999999999999999999999998754 33333333221
Q ss_pred ---------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCC
Q 023731 86 ---------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 86 ---------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~ 148 (278)
+..++..++..+...............+.+.++.+....... ...++.+..++....+..+.+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred HHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222222111100000000000112223333332221111 123444555555555667789
Q ss_pred CcEEEEcccccCCchHH
Q 023731 149 SDVILLEGILVFHDSRV 165 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~~ 165 (278)
++++++|+|++.+|+..
T Consensus 152 p~llllDEPt~~LD~~~ 168 (232)
T cd03218 152 PKFLLLDEPFAGVDPIA 168 (232)
T ss_pred CCEEEecCCcccCCHHH
Confidence 99999999999998753
No 106
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.39 E-value=6e-13 Score=112.30 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=82.4
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+..+ ++.|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSF---------------TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEEC
Confidence 345555 888876 47999999 9999999999999999999999999998754 3333333
Q ss_pred CCCC--------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCC
Q 023731 82 QDSF--------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (278)
Q Consensus 82 ~D~~--------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 139 (278)
..+. +..++..++..+....++....-..+...+.++.+...... ....++.+..++.
T Consensus 66 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 145 (218)
T cd03266 66 GFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKV 145 (218)
T ss_pred CEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHH
Confidence 2211 11122222211110000000000011222333333222111 1123444555555
Q ss_pred CCCccccCCCcEEEEcccccCCchHH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
...+..+.+++++++|+|++.+|+..
T Consensus 146 ~laral~~~p~illlDEPt~~LD~~~ 171 (218)
T cd03266 146 AIARALVHDPPVLLLDEPTTGLDVMA 171 (218)
T ss_pred HHHHHHhcCCCEEEEcCCCcCCCHHH
Confidence 55566778999999999999998753
No 107
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.38 E-value=4.9e-13 Score=112.83 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC---
Q 023731 15 GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF--- 85 (278)
Q Consensus 15 ~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~--- 85 (278)
++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+++ .|...++..+.
T Consensus 7 ~~~~~~~~~~~~il~~~s~---------------~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 71 (218)
T cd03255 7 SKTYGGGGEKVQALKGVSL---------------SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKL 71 (218)
T ss_pred EEEecCCCcceeEEeeeEE---------------EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhc
Confidence 778875 46999999 9999999999999999999999999998764 33344433221
Q ss_pred ----------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCC
Q 023731 86 ----------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVF 141 (278)
Q Consensus 86 ----------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~ 141 (278)
+..++..++..+.....+.......+.+.+.+..+........ ..++.+..++...
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03255 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAI 151 (218)
T ss_pred chhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHH
Confidence 1111222211111000000000001123334443332221111 2455555556555
Q ss_pred CccccCCCcEEEEcccccCCchH
Q 023731 142 PARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++..+.+++++++|+|++.+|+.
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~ 174 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSE 174 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHH
Confidence 66677899999999999999874
No 108
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=9.1e-13 Score=119.79 Aligned_cols=161 Identities=12% Similarity=0.159 Sum_probs=100.0
Q ss_pred hhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE-------
Q 023731 8 DMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV------- 77 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~------- 77 (278)
.||+-++ .+.|++ .+|++++| .+.++.+++|.||||||||||++.|++...+ .|.
T Consensus 18 ~~l~l~~v~~~~~~~~~l~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~ 82 (377)
T PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSL---------------TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD 82 (377)
T ss_pred ceEEEEeEEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEE
Confidence 3577766 899988 46999999 9999999999999999999999999998754 232
Q ss_pred -----------EEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 78 -----------VLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 78 -----------~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
.++.++ .+|..++..++..++......+..-..+...+.++.+...... ....++.+..+++...+
T Consensus 83 i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 83 LSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred CCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 333333 2333344444433221110000000011233344433332211 11255666666766667
Q ss_pred cccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhhh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVRL 183 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~~ 183 (278)
..+.+++++++|+|++.+|...+.. .+ ..||++.+.+...
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~ 214 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAM 214 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 7788999999999999999754321 13 4677777766543
No 109
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.38 E-value=1.7e-12 Score=108.58 Aligned_cols=133 Identities=13% Similarity=0.101 Sum_probs=82.1
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE-----------
Q 023731 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV----------- 80 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i----------- 80 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 6 ~~~~~~~~~~l~~v~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 6 SFSYKKGTEILDDLSL---------------DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERR 70 (205)
T ss_pred EEEeCCcCceeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhh
Confidence 788876 57999999 9999999999999999999999999998754 232333
Q ss_pred ------cCCC--CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCc
Q 023731 81 ------NQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 81 ------~~D~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
.++. ++...+..++..+..... ..+.....+.++.+........ ..++.+..++...++..+.+++
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL----DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc----CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 3331 111122222221110000 0112334455555443322211 2455555555555566778999
Q ss_pred EEEEcccccCCchHHh
Q 023731 151 VILLEGILVFHDSRVR 166 (278)
Q Consensus 151 iiiidg~~~~~d~~~~ 166 (278)
++++|+|++.+|+...
T Consensus 147 llllDEPt~~LD~~~~ 162 (205)
T cd03226 147 LLIFDEPTSGLDYKNM 162 (205)
T ss_pred EEEEeCCCccCCHHHH
Confidence 9999999999987533
No 110
>PRK13948 shikimate kinase; Provisional
Probab=99.38 E-value=3.2e-12 Score=104.60 Aligned_cols=163 Identities=14% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
.++..|+++|++||||||+++.|++.+ +..+++.|.+........... .|...+ ...+.+.-....
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l---g~~~iD~D~~ie~~~g~si~~----if~~~G---e~~fR~~E~~~l---- 73 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL---MLHFIDTDRYIERVTGKSIPE----IFRHLG---EAYFRRCEAEVV---- 73 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEECCHHHHHHHhCCHHH----HHHHhC---HHHHHHHHHHHH----
Confidence 466789999999999999999999998 578889997664322211111 111111 111111111000
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhh---hcCeEEEEecChhhhhHHhhhccccc-cCCCHHHH
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVE-KGRDIATV 201 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~---~~d~~I~l~~~~e~~~~R~~~R~~~~-~~~~~~~~ 201 (278)
.........+|..|.....++..+. ....+|||+++.+...+|+..+.... .+......
T Consensus 74 -----------------~~l~~~~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~ 136 (182)
T PRK13948 74 -----------------RRLTRLDYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGR 136 (182)
T ss_pred -----------------HHHHhcCCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHH
Confidence 0011123446666655555554332 24689999999999999984332111 11122223
Q ss_pred HHHHhhccccccccccccccccccEEeeCCCCcH-HHHHHHHHHHHH
Q 023731 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRT 247 (278)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~-~~~~~l~~~I~~ 247 (278)
+........|.| ..||++|++++.+. ...+.+++.+..
T Consensus 137 l~~l~~~R~~~Y--------~~a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 137 IRTLLNEREPVY--------RQATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHHHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 333333344443 33999999876554 334555555544
No 111
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.38 E-value=9.7e-13 Score=111.23 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=80.2
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+... . ..
T Consensus 7 ~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~-~~ 69 (220)
T cd03265 7 VKKYGDFEAVRGVSF---------------RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-E-PR 69 (220)
T ss_pred EEEECCEEeeeceeE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-C-hH
Confidence 778877 46999999 9999999999999999999999999998754 3333343322111 0 00
Q ss_pred HHHHccccCCCCCCc------------------cc----HHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCC
Q 023731 93 ELARVHEYNFDHPDA------------------FD----TEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~------------------~d----~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~ 148 (278)
.......+.++++.. .+ .+...+.++.+....... ...++.+..++....+..+.+
T Consensus 70 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred HHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111111111221110 01 112233344333222111 124555555555555667789
Q ss_pred CcEEEEcccccCCchHH
Q 023731 149 SDVILLEGILVFHDSRV 165 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~~ 165 (278)
++++++|+|++.+|+..
T Consensus 150 p~llllDEPt~~LD~~~ 166 (220)
T cd03265 150 PEVLFLDEPTIGLDPQT 166 (220)
T ss_pred CCEEEEcCCccCCCHHH
Confidence 99999999999998753
No 112
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.38 E-value=9.4e-13 Score=111.37 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=79.5
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC-------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------- 85 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~------- 85 (278)
+++|++ ..++++|| .+.++.+++|+|++|||||||++.|++.+.+ .|...++..+.
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 7 NAGYGKSQILFGVSL---------------TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71 (222)
T ss_pred EeecCCeeEeeeeeE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHH
Confidence 778887 46999999 9999999999999999999999999998754 23333333221
Q ss_pred ---------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh-cCC--CccccccCCcCCcCCCCCccccC
Q 023731 86 ---------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 86 ---------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~--~i~~~~~~~~~~~~~~~~~~~~~ 147 (278)
+..++..++..+...... .......+.+.++.+. ... ......++.+..++....+..+.
T Consensus 72 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred HHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 111222222111110000 0000112223333331 111 11112455555556555566778
Q ss_pred CCcEEEEcccccCCchHH
Q 023731 148 PSDVILLEGILVFHDSRV 165 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~~ 165 (278)
+++++++|+|++.+|+..
T Consensus 150 ~p~llllDEPt~~LD~~~ 167 (222)
T cd03224 150 RPKLLLLDEPSEGLAPKI 167 (222)
T ss_pred CCCEEEECCCcccCCHHH
Confidence 999999999999998753
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.38 E-value=4.7e-13 Score=113.74 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=84.7
Q ss_pred hhccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 8 DMIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
.||+.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVEL---------------VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 4677777 889975 27999999 9999999999999999999999999998753 233333
Q ss_pred cCCCCC-------------------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCC
Q 023731 81 NQDSFY-------------------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDF 133 (278)
Q Consensus 81 ~~D~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~ 133 (278)
+..+.. ...+..++..+.......+.....+...+.++.+....... ...++.
T Consensus 70 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 149 (228)
T PRK10584 70 VGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSG 149 (228)
T ss_pred CCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCH
Confidence 332211 11122111111100000000001122333344333222111 124555
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..++....+..+.+++++++|+|+..+|+.
T Consensus 150 Ge~qrl~la~al~~~p~llllDEPt~~LD~~ 180 (228)
T PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 5555655556677899999999999999874
No 114
>PRK00625 shikimate kinase; Provisional
Probab=99.38 E-value=2.3e-12 Score=104.71 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCC-Cc---ccHHHHHHHHHHhhcCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHP-DA---FDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~-~~---~d~~~~~~~l~~~~~~~~ 125 (278)
.|.|+|++||||||+++.|++.+ +..+++.|.+.... .+...+... +. ...+.+.+.=...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~id~D~~I~~~-------~g~~~~~~i~eif~~~Ge~~fr~~E~~~----- 66 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPFFDTDDLIVSN-------YHGALYSSPKEIYQAYGEEGFCREEFLA----- 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEhhHHHHHH-------hCCCCCCCHHHHHHHHCHHHHHHHHHHH-----
Confidence 58999999999999999999998 58899998765321 000000000 00 0000111100000
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhc---CeEEEEecChhhhhHHhhhccccccCCCHHHHH
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIATVL 202 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~---d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~ 202 (278)
...+.....+|..|.....+++..+.+ +.+||++++.++..+|+.+|.........+.+
T Consensus 67 -----------------l~~l~~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~- 128 (173)
T PRK00625 67 -----------------LTSLPVIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSL- 128 (173)
T ss_pred -----------------HHHhccCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHH-
Confidence 001111234555665555555544443 68999999999999999988643322223333
Q ss_pred HHHhhccccccccccccccccccEEeeCCC---CcHHHHHHHHHHHHH
Q 023731 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGG---DNHVAIDLIVQHIRT 247 (278)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~---~~~~~~~~l~~~I~~ 247 (278)
.+......|.| .+.||++|+.+. ++...+..+.+.+..
T Consensus 129 ~~ll~~R~~~Y-------~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~ 169 (173)
T PRK00625 129 EEILSQRIDRM-------RSIADYIFSLDHVAETSSESLMRACQSFCT 169 (173)
T ss_pred HHHHHHHHHHH-------HHHCCEEEeCCCcccCCCCCHHHHHHHHHH
Confidence 33333344444 467999887652 222345555555443
No 115
>PRK10908 cell division protein FtsE; Provisional
Probab=99.37 E-value=1e-12 Score=111.22 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=81.9
Q ss_pred hccCCc-eeee-CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHF-SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~-~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+..+ +++| ++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~ 65 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTF---------------HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHD 65 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 355566 8888 54 57999999 9999999999999999999999999998764 3444444322
Q ss_pred CCCCCCHHH---HHHccccCCCCCCc------------------ccHH----HHHHHHHHhhcCCCcc--ccccCCcCCc
Q 023731 85 FYHNLTEQE---LARVHEYNFDHPDA------------------FDTE----KLLSSMEKLRHGQAVD--IPNYDFKSYK 137 (278)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~~~~~~~------------------~d~~----~~~~~l~~~~~~~~i~--~~~~~~~~~~ 137 (278)
... ..... ......|.++++.. ++.+ ...+.++.+....... ...++.+..+
T Consensus 66 i~~-~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (222)
T PRK10908 66 ITR-LKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144 (222)
T ss_pred ccc-CChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH
Confidence 210 11000 01111122222111 1111 1222333322211111 1234444455
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+....+..+.+++++++|+|++.+|+.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~ 171 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDA 171 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHH
Confidence 555556667889999999999999875
No 116
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.37 E-value=2.8e-12 Score=125.76 Aligned_cols=190 Identities=16% Similarity=0.217 Sum_probs=116.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
.+|+|.||+||||||+|+.|++.| ++.+++...+|+......... ...++ ....|.+.+.+.+..+..+..+..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l---~~~~~~~g~~~r~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL---GYAYLDTGAMYRACAWWCLKQ--GIDLD-AELVDEQVVTEAVGEFFTGLHFDI 75 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCcEeecCcEeHHHHHHHHhc--CCCcc-hhhhhhhhhHHHHHHHHhCCcEEE
Confidence 489999999999999999999999 589999999886543221111 11111 111233334444433322211100
Q ss_pred -----------------------------------cccCCcCCcCCCCCcccc-CCC--------cEEEEcccccCCchH
Q 023731 129 -----------------------------------PNYDFKSYKNNVFPARRV-NPS--------DVILLEGILVFHDSR 164 (278)
Q Consensus 129 -----------------------------------~~~~~~~~~~~~~~~~~~-~~~--------~iiiidg~~~~~d~~ 164 (278)
|..+...... ++... ..+ .-+|+||.-.++ -
T Consensus 76 ~~~~~~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~---qr~~~~~~~~~~~~~~~~~~v~eGRdigt--v 150 (712)
T PRK09518 76 SVDPDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAA---QRAYIAREASADSFSGGLGIVAEGRDITT--V 150 (712)
T ss_pred ecCCCCcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHH---HHHHHhhcCccccccccCcEEEecCccce--E
Confidence 0000000000 01111 111 269999987764 3
Q ss_pred HhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccccccccc-EEeeCCCCcH-HHHHHHH
Q 023731 165 VRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNH-VAIDLIV 242 (278)
Q Consensus 165 ~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~-~~~~~l~ 242 (278)
+.+..|++|||+++.++|.+|+.++... .+.+++.+....+..... +.+.|.....| ++|+++..+. +.++.+.
T Consensus 151 v~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~ 226 (712)
T PRK09518 151 VAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLI 226 (712)
T ss_pred EecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 4556789999999999999999998643 567777777766666666 88888655555 7888877654 5556777
Q ss_pred HHHHHhhccCc
Q 023731 243 QHIRTKLGQHD 253 (278)
Q Consensus 243 ~~I~~~l~~~~ 253 (278)
+.|++.+..++
T Consensus 227 ~~i~~~~~~~~ 237 (712)
T PRK09518 227 GLVEDAIEEQE 237 (712)
T ss_pred HHHHhhhhhhh
Confidence 77766655443
No 117
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.37 E-value=1.3e-12 Score=117.85 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=98.9
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC----------
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR---------- 76 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~---------- 76 (278)
|+-.+ ++.|++ ..|++||| .+.++.+++|.||||||||||++.|++.+++ .|
T Consensus 3 L~i~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISL---------------DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 44445 889988 46999999 9999999999999999999999999998754 22
Q ss_pred --------EEEEcCCC-CCCCCCHHHHHHccccCCCCCCccc----HHHHHHHHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 77 --------VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 77 --------~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
+.++.++. ++..++..++..++...+......+ .+...+.++.+...... ....++.+..++...
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 33344432 2333444444333211110000111 12334445544332211 112555566666666
Q ss_pred CccccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhhh
Q 023731 142 PARRVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVRL 183 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~~ 183 (278)
.+..+.+++++++|+|++.+|+..+..+ . ..|++..+.+...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~ 201 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM 201 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 6777889999999999999997543221 2 4677777766544
No 118
>PRK13946 shikimate kinase; Provisional
Probab=99.37 E-value=5.8e-12 Score=103.63 Aligned_cols=163 Identities=19% Similarity=0.275 Sum_probs=90.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 126 (278)
.+..|+++|++||||||+++.|++.| ++.+++.|.............+ |. .+..+.+.+.-..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D~~~~~~~g~~~~e~----~~---~~ge~~~~~~e~~~l----- 73 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML---GLPFLDADTEIERAARMTIAEI----FA---AYGEPEFRDLERRVI----- 73 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCeECcCHHHHHHhCCCHHHH----HH---HHCHHHHHHHHHHHH-----
Confidence 44579999999999999999999998 5888888863321110000000 00 000111110000000
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh---cCeEEEEecChhhhhHHhhhccccc--cCCCHHHH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVE--KGRDIATV 201 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~---~d~~I~l~~~~e~~~~R~~~R~~~~--~~~~~~~~ 201 (278)
.........+|..|...+..+..+.. .++.|||++|.+.+.+|+.+|.+.. .+......
T Consensus 74 ----------------~~l~~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~ 137 (184)
T PRK13946 74 ----------------ARLLKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKET 137 (184)
T ss_pred ----------------HHHHhcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHH
Confidence 01122334567776655555544332 4689999999999999998886432 11223333
Q ss_pred HHHHhhccccccccccccccccccEEeeCCCCcH-HHHHHHHHHHHHh
Q 023731 202 LDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIRTK 248 (278)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~-~~~~~l~~~I~~~ 248 (278)
.........+.| ..+|++|+++.-+. ..++.++..|...
T Consensus 138 i~~~~~~R~~~y--------~~~dl~i~~~~~~~~~~~~~i~~~i~~~ 177 (184)
T PRK13946 138 LARLMEERYPVY--------AEADLTVASRDVPKEVMADEVIEALAAY 177 (184)
T ss_pred HHHHHHHHHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 333333233332 34899997665544 4455666655543
No 119
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=7.2e-13 Score=113.03 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=82.7
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
|++..+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 69 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSF---------------SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 466666 888864 46999999 9999999999999999999999999998753 3333333
Q ss_pred CCCC-------------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCc
Q 023731 82 QDSF-------------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFK 134 (278)
Q Consensus 82 ~D~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~ 134 (278)
..+. +..++..++..+..........-..+...+.++.+........ ..++.+
T Consensus 70 g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 149 (233)
T PRK11629 70 GQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGG 149 (233)
T ss_pred CEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHH
Confidence 3221 1112222222111000000000001122333443332221111 234444
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++...++..+.+++++++|+|++.+|+.
T Consensus 150 ~~qrl~la~al~~~p~lllLDEPt~~LD~~ 179 (233)
T PRK11629 150 ERQRVAIARALVNNPRLVLADEPTGNLDAR 179 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 455555556667899999999999999875
No 120
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=4.1e-13 Score=117.58 Aligned_cols=143 Identities=13% Similarity=0.220 Sum_probs=86.4
Q ss_pred hhhhccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEE
Q 023731 6 VVDMIEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVL 79 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~ 79 (278)
|..||+..+ .++|++ ..|+|||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 1 MSNIIEVKNLTFKYKEDQEKYTLNDVSF---------------HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred CCceEEEEeEEEEcCCCCcCeeeeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 344677777 899963 37999999 9999999999999999999999999998754 34444
Q ss_pred EcCCCCCCCCCHHHHHHccccCCCCCC-------------------cccH----HHHHHHHHHhhcCCCccc--cccCCc
Q 023731 80 VNQDSFYHNLTEQELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAVDI--PNYDFK 134 (278)
Q Consensus 80 i~~D~~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~----~~~~~~l~~~~~~~~i~~--~~~~~~ 134 (278)
++..+.. ............+.|+++. .++. +...+.++.+........ ..++.+
T Consensus 66 ~~g~~i~-~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgG 144 (279)
T PRK13650 66 IDGDLLT-EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGG 144 (279)
T ss_pred ECCEECC-cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHH
Confidence 4442221 1111111111112222210 0111 122333333332221111 244444
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++...++..+.+++++++|+|++.+|+.
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~ 174 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPE 174 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 555555566677899999999999999974
No 121
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.36 E-value=9.9e-13 Score=114.91 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=84.8
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+-++ ++.|+ + .+|+|||| .+.+|.+++|.|++|||||||++.|++.+.+ .|-..++..+
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 68 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSL---------------SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE 68 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEE
Confidence 566667 88995 4 57999999 9999999999999999999999999998764 3444444322
Q ss_pred CCCCCCHHHHHHccccCCCCCC-------------------cccH----HHHHHHHHHhhcCCCc--cccccCCcCCcCC
Q 023731 85 FYHNLTEQELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 139 (278)
.- ............+.++++. .++. ..+.+.++.+...... ....++.+..++.
T Consensus 69 ~~-~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv 147 (274)
T PRK13647 69 VN-AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRV 147 (274)
T ss_pred CC-CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHH
Confidence 11 1111111111122222210 0111 1122233332222111 1124555555565
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++..+.+++++++|+|.+.+|+.
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~ 172 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPR 172 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHH
Confidence 5666778899999999999999974
No 122
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.36 E-value=8.2e-13 Score=112.90 Aligned_cols=140 Identities=13% Similarity=0.177 Sum_probs=81.3
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY 86 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~ 86 (278)
|+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..+..
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSF---------------TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcc
Confidence 44445 788876 57999999 9999999999999999999999999998754 233333332211
Q ss_pred --------------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023731 87 --------------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 87 --------------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
...+..++..+.....+.......+...+.++.+...... ....++.+..++...++.
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHH
Confidence 1112211111100000000000011222333333221111 112445555555555566
Q ss_pred ccCCCcEEEEcccccCCchH
Q 023731 145 RVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.+++++++|+|++.+|+.
T Consensus 147 l~~~p~llllDEP~~~LD~~ 166 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPA 166 (236)
T ss_pred HhcCCCEEEEcCCccCCCHH
Confidence 77899999999999999875
No 123
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.36 E-value=7.7e-12 Score=103.03 Aligned_cols=171 Identities=10% Similarity=0.086 Sum_probs=87.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV 126 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 126 (278)
++.+++|+||||||||||++.|++.+.+ .++..+........... ..+.+ +..+.+.+.+ ..+...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~---~~~~~~ 66 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGS---ENHIA-----LSEQEFFTRA---GQNLFA 66 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhH---Hhhee-----EcHHHHHHHH---HCCchh
Confidence 3568999999999999999999998742 33444443322111111 11111 1112211111 111110
Q ss_pred cc---cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhc---CeEEEEecChhhhhHHhhhccccccCCCHHH
Q 023731 127 DI---PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELM---NMKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 127 ~~---~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~---d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~ 200 (278)
.. ...-+++... ....+..+..+|++|..... ..+...+ -.+|||++|.++..+|+.+|+.. ..+.
T Consensus 67 ~~~~~~g~~yg~~~~---~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~----~~~~ 138 (186)
T PRK10078 67 LSWHANGLYYGVGIE---IDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGRE----NASE 138 (186)
T ss_pred hHHHHhCCccCCcHH---HHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC----CHHH
Confidence 00 0011122211 11223344556677765443 2333332 36799999999999999888532 2344
Q ss_pred HHHHHhhcccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHhhccCc
Q 023731 201 VLDQYSKFVKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKLGQHD 253 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~l~~~I~~~l~~~~ 253 (278)
+..++... +. ...+| ++|+|++ +++++++.|...+....
T Consensus 139 i~~rl~r~--~~--------~~~ad~~vi~~~~----s~ee~~~~i~~~l~~~~ 178 (186)
T PRK10078 139 INARLARA--AR--------YQPQDCHTLNNDG----SLRQSVDTLLTLLHLSQ 178 (186)
T ss_pred HHHHHHHh--hh--------hccCCEEEEeCCC----CHHHHHHHHHHHHhhcC
Confidence 44444221 11 22467 6777654 35677777776665443
No 124
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.36 E-value=1.5e-12 Score=117.57 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=91.3
Q ss_pred eeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHH
Q 023731 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQE 93 (278)
Q Consensus 16 ~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~ 93 (278)
|+|++ .+|+|+|| .+.++.+++|.|+||||||||.++|++.+.+ .|-..++..++.. .....
T Consensus 1 ~~~~~~~~l~~vs~---------------~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~-~~~~~ 64 (363)
T TIGR01186 1 KKTGGKKGVNDADL---------------AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-QSPVE 64 (363)
T ss_pred CccCCceeEEeeEE---------------EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCc-CCHHH
Confidence 46777 57999999 9999999999999999999999999998864 3334444433221 11111
Q ss_pred H----HHccccCCCCCCc------------------ccH----HHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccc
Q 023731 94 L----ARVHEYNFDHPDA------------------FDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 94 ~----~~~~~~~~~~~~~------------------~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~ 145 (278)
. .....|.|+.+.- +.. +...+.++.+...... ....++.+..++...++..
T Consensus 65 ~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL 144 (363)
T TIGR01186 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARAL 144 (363)
T ss_pred HHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 1111222222111 111 2223334333222211 1125555666666666777
Q ss_pred cCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023731 146 VNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
+.+++++++|+|++.+|+..+.. .+ .+||+..+.+..
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea 193 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA 193 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 88999999999999999853321 13 466777766654
No 125
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.36 E-value=1.5e-12 Score=110.43 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred cCCceeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC-----
Q 023731 11 EASSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD----- 83 (278)
Q Consensus 11 ~~~~~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D----- 83 (278)
.....++|++. .|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|...++..
T Consensus 25 ~~~~~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~ 89 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSF---------------EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL 89 (224)
T ss_pred hhhhhhhcCCeEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh
Confidence 33448899994 6999999 9999999999999999999999999998754 333333321
Q ss_pred ----CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEccc
Q 023731 84 ----SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGI 157 (278)
Q Consensus 84 ----~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~ 157 (278)
.++...+..++..+....+........+...+.++.+...... ....++.+..++....+..+.+++++++|+|
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1222334433332221111100000111223333332222211 1124444555555555667789999999999
Q ss_pred ccCCchH
Q 023731 158 LVFHDSR 164 (278)
Q Consensus 158 ~~~~d~~ 164 (278)
+..+|+.
T Consensus 170 ~~gLD~~ 176 (224)
T cd03220 170 LAVGDAA 176 (224)
T ss_pred cccCCHH
Confidence 9999874
No 126
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.36 E-value=2.2e-12 Score=110.18 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=79.8
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC-------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------- 85 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~------- 85 (278)
++.|++ ..|+++|| ++.++.+++|.|++|||||||++.|++.+++ .|...++..+.
T Consensus 7 ~~~~~~~~~l~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 7 TKRFGGLVALDDVSF---------------SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE 71 (236)
T ss_pred EEEECCEEEecCceE---------------EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHH
Confidence 788877 47999999 9999999999999999999999999998754 33333333221
Q ss_pred ---------------CCCCCHHHHHHccccCCCCCC----------cccHHHHHHHHHHhhcCCCcc--ccccCCcCCcC
Q 023731 86 ---------------YHNLTEQELARVHEYNFDHPD----------AFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKN 138 (278)
Q Consensus 86 ---------------~~~~~~~~~~~~~~~~~~~~~----------~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~ 138 (278)
+..++..++..+......... .-......+.++.+....... ...++.+..++
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 151 (236)
T cd03219 72 IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR 151 (236)
T ss_pred HHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH
Confidence 112222222211110000000 000112233333333222111 12444455555
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
...++..+.+++++++|+|++.+|+.
T Consensus 152 v~la~al~~~p~llllDEPt~~LD~~ 177 (236)
T cd03219 152 LEIARALATDPKLLLLDEPAAGLNPE 177 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 55556677899999999999999875
No 127
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2.8e-12 Score=118.25 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=110.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------ 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------------ 74 (278)
+++.++ .|+|++ .+|++||| ...++.+.+++|.+|||||||.|.|++.+.+
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l---------------~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSL---------------TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcCCceeecccee---------------EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc
Confidence 577777 999999 56999999 9999999999999999999999999998865
Q ss_pred ----------CCEEEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC----Ccccc--ccCCcCCc
Q 023731 75 ----------QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ----AVDIP--NYDFKSYK 137 (278)
Q Consensus 75 ----------~~~~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~----~i~~~--~~~~~~~~ 137 (278)
.|+.+++++ ....+++..++..++.........+|+..+.+.-..+...- ....+ .++....+
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ 152 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQ 152 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHH
Confidence 477888887 55577888888877766544345678877775544433311 12222 22222233
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH-HhhhcC----------eEEEEecChhhhh
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSR-VRELMN----------MKIFVDTDADVRL 183 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~-~~~~~d----------~~I~l~~~~e~~~ 183 (278)
.+..++....+.+++|+|+|++.+... ....|+ -+|||.+..++.+
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 333334455678899999999987642 222221 4667666555433
No 128
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.35 E-value=1.9e-12 Score=111.01 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=83.6
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+.++ ++.|+ + ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 65 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINL---------------NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65 (243)
T ss_pred CeEEEeeeeecCCCcceeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEE
Confidence 355556 88887 5 57999999 9999999999999999999999999998754 3434443322
Q ss_pred C------------------------CCCCCHHHHHHccccCC--------CCCCcccHHHHHHHHHHhhcCCCc--cccc
Q 023731 85 F------------------------YHNLTEQELARVHEYNF--------DHPDAFDTEKLLSSMEKLRHGQAV--DIPN 130 (278)
Q Consensus 85 ~------------------------~~~~~~~~~~~~~~~~~--------~~~~~~d~~~~~~~l~~~~~~~~i--~~~~ 130 (278)
. +..++..++..+..... ......+.+...+.++.+...... ....
T Consensus 66 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 66 ITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred hhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 1 11122222111110000 000000111223333333222111 1124
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 179 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 5555555666666777899999999999999875
No 129
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.35 E-value=1.3e-12 Score=109.88 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=78.8
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCH
Q 023731 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTE 91 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~ 91 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+.. ....
T Consensus 7 ~~~~~~~~~~l~~~sl---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~-~~~~ 70 (214)
T cd03292 7 TKTYPNGTAALDGINI---------------SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS-DLRG 70 (214)
T ss_pred EEEeCCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcc-cCCH
Confidence 788863 57999999 9999999999999999999999999998754 333444332211 1111
Q ss_pred H---HHHHccccCCCCCCcc------------------cHH----HHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcc
Q 023731 92 Q---ELARVHEYNFDHPDAF------------------DTE----KLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 92 ~---~~~~~~~~~~~~~~~~------------------d~~----~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~ 144 (278)
. .......+.++.+..+ ..+ .+.+.++.+...... ....++.+..++....+.
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 71 RAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred HHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHH
Confidence 0 0111111112211111 111 122223332221111 112444455555555566
Q ss_pred ccCCCcEEEEcccccCCchHH
Q 023731 145 RVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+.+++++++|+|++.+|+..
T Consensus 151 l~~~p~llllDEPt~~LD~~~ 171 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDT 171 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHH
Confidence 778999999999999998753
No 130
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=2.1e-12 Score=110.25 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=80.1
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCH-
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTE- 91 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~- 91 (278)
++.|++ .+|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++..+... ...
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-~~~~ 70 (235)
T cd03261 7 TKSFGGRTVLKGVDL---------------DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISG-LSEA 70 (235)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-cChh
Confidence 788876 57999999 9999999999999999999999999998764 3444443322110 000
Q ss_pred --HHHHHccccCCCCCCc-------------------ccH----HHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCcc
Q 023731 92 --QELARVHEYNFDHPDA-------------------FDT----EKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPAR 144 (278)
Q Consensus 92 --~~~~~~~~~~~~~~~~-------------------~d~----~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~ 144 (278)
........+.++.+.. ... +...+.++.+........ ..++.+..+++..++.
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 0001111111111111 111 122233333332221111 2445555556555666
Q ss_pred ccCCCcEEEEcccccCCchH
Q 023731 145 RVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.+++++++|+|++.+|+.
T Consensus 151 l~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred HhcCCCEEEecCCcccCCHH
Confidence 77899999999999999874
No 131
>PRK04040 adenylate kinase; Provisional
Probab=99.35 E-value=3.8e-12 Score=104.92 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=86.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
+++|+|+|++||||||+++.|++.++ .++.+++.++++..... ..+ + . .+.+.+. .+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~~~a~----~~g-~-~-----~~~d~~r----~l~------ 59 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVMLEVAK----EEG-L-V-----EHRDEMR----KLP------ 59 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHHHHHH----HcC-C-C-----CCHHHHh----hCC------
Confidence 67999999999999999999999984 24777777776522110 000 0 0 0001110 000
Q ss_pred ccccCCcCCc-CCCCCccccCCCcEEEEcccccC------C---chHHh-h-hcCeEEEEecChhhhhHHhhhccccccC
Q 023731 128 IPNYDFKSYK-NNVFPARRVNPSDVILLEGILVF------H---DSRVR-E-LMNMKIFVDTDADVRLARRIRRDTVEKG 195 (278)
Q Consensus 128 ~~~~~~~~~~-~~~~~~~~~~~~~iiiidg~~~~------~---d~~~~-~-~~d~~I~l~~~~e~~~~R~~~R~~~~~~ 195 (278)
.......+ ..............+++|+.+.. + ..... + ..|..|++.++++..++|+++.....++
T Consensus 60 --~~~~~~~~~~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~ 137 (188)
T PRK04040 60 --PEEQKELQREAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRD 137 (188)
T ss_pred --hhhhHHHHHHHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCC
Confidence 00000000 00000111223444677775431 1 11111 1 2489999999999999999852111122
Q ss_pred CCHHHHHHHHhhccccccccccccccccccEEeeCCCC-cHHHHHHHHHH
Q 023731 196 RDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGD-NHVAIDLIVQH 244 (278)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~-~~~~~~~l~~~ 244 (278)
....+.+..++. ....|..++..+...++++|.|+.. .+.+++++++.
T Consensus 138 ~es~e~I~~~~~-~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~i 186 (188)
T PRK04040 138 VETEEDIEEHQE-MNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEV 186 (188)
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 222232332222 2223334444456678988887742 33555555544
No 132
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.35 E-value=2e-12 Score=112.62 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=85.4
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
...||+.++ ++.|++ ..|++||| .+.++.+++|.|++|||||||++.|++.+.+ .|...++.
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 68 (269)
T PRK11831 4 VANLVDMRGVSFTRGNRCIFDNISL---------------TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDG 68 (269)
T ss_pred ccceEEEeCeEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 345788877 899987 57999999 9999999999999999999999999998754 34344433
Q ss_pred CCCCCCCCHH---HHHHccccCCCCCCcc-------------------cH----HHHHHHHHHhhcCCCc--cccccCCc
Q 023731 83 DSFYHNLTEQ---ELARVHEYNFDHPDAF-------------------DT----EKLLSSMEKLRHGQAV--DIPNYDFK 134 (278)
Q Consensus 83 D~~~~~~~~~---~~~~~~~~~~~~~~~~-------------------d~----~~~~~~l~~~~~~~~i--~~~~~~~~ 134 (278)
.+... .... .......+.++.+..+ +. ....+.+..+...... ....++.+
T Consensus 69 ~~i~~-~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG 147 (269)
T PRK11831 69 ENIPA-MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGG 147 (269)
T ss_pred EEccc-cChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 22110 0000 0000011112211111 11 1122223332222111 11244444
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..++...++..+.+++++++|+|++.+|+..
T Consensus 148 q~qrv~laral~~~p~lllLDEPt~~LD~~~ 178 (269)
T PRK11831 148 MARRAALARAIALEPDLIMFDEPFVGQDPIT 178 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 4555555566778899999999999998753
No 133
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.35 E-value=2.3e-12 Score=108.32 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=82.9
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------------E
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR---------------V 77 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~---------------~ 77 (278)
++.|++ ..+++||| .+.++.+++|+|++|||||||++.|++.+.+ .| +
T Consensus 6 ~~~~~~~~~l~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i 70 (213)
T cd03235 6 TVSYGGHPVLEDVSF---------------EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70 (213)
T ss_pred eeEECCEEeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhhe
Confidence 778877 46999999 9999999999999999999999999998754 23 3
Q ss_pred EEEcCCCCC---CCCCHHHHHHccccCC----CCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCC
Q 023731 78 VLVNQDSFY---HNLTEQELARVHEYNF----DHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 78 ~~i~~D~~~---~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~ 148 (278)
.++.++... ...+..++..+..... ........+.+.+.++.+....... ...++.+..++...++..+.+
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 344444322 1123333332211100 0000111123334444433221111 124455555555555667789
Q ss_pred CcEEEEcccccCCchHH
Q 023731 149 SDVILLEGILVFHDSRV 165 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~~ 165 (278)
++++++|+|++.+|+..
T Consensus 151 p~llllDEPt~~LD~~~ 167 (213)
T cd03235 151 PDLLLLDEPFAGVDPKT 167 (213)
T ss_pred CCEEEEeCCcccCCHHH
Confidence 99999999999998753
No 134
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.35 E-value=2.6e-12 Score=111.26 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC---
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ--- 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~--- 82 (278)
||+.++ ++.|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSL---------------TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 466666 889987 57999999 9999999999999999999999999998754 33333333
Q ss_pred -----------------CCC-CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCC
Q 023731 83 -----------------DSF-YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFP 142 (278)
Q Consensus 83 -----------------D~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~ 142 (278)
+.. +...+..++..+.................+.++.+...... ....++.+..++....
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la 146 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLA 146 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 211 12222222221111000000000111223333333222111 1224455555555554
Q ss_pred cccc------CCCcEEEEcccccCCchH
Q 023731 143 ARRV------NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 143 ~~~~------~~~~iiiidg~~~~~d~~ 164 (278)
+..+ .+++++++|+|++.+|+.
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~ 174 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLA 174 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHH
Confidence 5555 478999999999999875
No 135
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.35 E-value=1.9e-12 Score=108.89 Aligned_cols=131 Identities=16% Similarity=0.116 Sum_probs=79.5
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE------------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV------------ 80 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i------------ 80 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 7 ~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 7 TKRFGNVTALDDLNL---------------DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred EEEECCeeeeeceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccc
Confidence 778887 56999999 9999999999999999999999999998754 233333
Q ss_pred ------cCCCC-CCCCCHHHHHHccccCCCCCCcccHH----HHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccC
Q 023731 81 ------NQDSF-YHNLTEQELARVHEYNFDHPDAFDTE----KLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ------~~D~~-~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~ 147 (278)
.++.. +...+..++..+..... .+..+ ...+.+..+....... ...++.+..++....+..+.
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLR----KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 32221 11223222222111000 01111 2223333332221111 12455555555555566778
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|+|+..+|+.
T Consensus 148 ~p~llllDEPt~~LD~~ 164 (213)
T cd03301 148 EPKVFLMDEPLSNLDAK 164 (213)
T ss_pred CCCEEEEcCCcccCCHH
Confidence 99999999999999875
No 136
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.35 E-value=2.2e-12 Score=105.86 Aligned_cols=130 Identities=10% Similarity=0.078 Sum_probs=84.2
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 023731 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY 86 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~ 86 (278)
||+..+ ++.| .++++|| .+.++.+++|.|++|||||||++.|++.+++ .|-..++..+..
T Consensus 4 ~l~~~~l~~~~---~l~~vs~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 65 (182)
T cd03215 4 VLEVRGLSVKG---AVRDVSF---------------EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65 (182)
T ss_pred EEEEeccEEEe---eecceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 466666 7777 8999999 9999999999999999999999999999864 455555553322
Q ss_pred CCCC-HHHHHHccccCCCCCC---cccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc
Q 023731 87 HNLT-EQELARVHEYNFDHPD---AFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (278)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~---~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d 162 (278)
. .. .........+.++++. .+......+.+.... .++.+..++....+..+.+++++++|+|++.+|
T Consensus 66 ~-~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~--------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD 136 (182)
T cd03215 66 R-RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS--------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVD 136 (182)
T ss_pred c-cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh--------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCC
Confidence 1 11 1111222334444321 121112223332110 155566666656666778999999999999998
Q ss_pred hHH
Q 023731 163 SRV 165 (278)
Q Consensus 163 ~~~ 165 (278)
+..
T Consensus 137 ~~~ 139 (182)
T cd03215 137 VGA 139 (182)
T ss_pred HHH
Confidence 753
No 137
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.6e-12 Score=114.16 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=86.6
Q ss_pred hhccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 8 DMIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 8 ~~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
.||+.++ ++.|+ + .+|++||| .+.+|.+++|.|++|||||||++.|++.+++ .|-..++..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~ 68 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGINI---------------NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGK 68 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCE
Confidence 3677777 99996 4 57999999 9999999999999999999999999998754 344444443
Q ss_pred CCC-CCCCHHHHHHccccCCCCCC--c-----------------cc----HHHHHHHHHHhhcCCCc--cccccCCcCCc
Q 023731 84 SFY-HNLTEQELARVHEYNFDHPD--A-----------------FD----TEKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (278)
Q Consensus 84 ~~~-~~~~~~~~~~~~~~~~~~~~--~-----------------~d----~~~~~~~l~~~~~~~~i--~~~~~~~~~~~ 137 (278)
+.. .............|.++++. . +. .....+.++.+...... ....++.+..+
T Consensus 69 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~q 148 (283)
T PRK13636 69 PIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKK 148 (283)
T ss_pred ECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHH
Confidence 321 11111111111222222221 0 00 11222233333222111 11244445555
Q ss_pred CCCCCccccCCCcEEEEcccccCCchHH
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+....+..+.+++++++|+|+..+|+..
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~ 176 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMG 176 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 5555566778999999999999999743
No 138
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4e-12 Score=102.87 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=98.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+-+| +++|++ ..++++|+ .++++.+-+|+||+|||||||....++.++. .|...+++-+.
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl---------------~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~ 65 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSL---------------DIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL 65 (252)
T ss_pred CeeehhhhHhhCCEEeecccee---------------eecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeec
Confidence 677778 999999 56999999 9999999999999999999999999998863 34455554222
Q ss_pred C---------------------CCCCHHHHHHccccCCC--CCCcccHHHHHHHHHHhhcCCC--ccccccCCcCCcCCC
Q 023731 86 Y---------------------HNLTEQELARVHEYNFD--HPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNV 140 (278)
Q Consensus 86 ~---------------------~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~ 140 (278)
. -.++.++...|+++.+. .+..-|+....++++-+....- -.....+.+..+|.-
T Consensus 66 ~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAf 145 (252)
T COG4604 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAF 145 (252)
T ss_pred ccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhh
Confidence 1 22334445567776654 3455677777777776655431 122344555555543
Q ss_pred CCccccCCCcEEEEcccccCCch
Q 023731 141 FPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
.+.....+.+++++|+|+..+|-
T Consensus 146 IAMVlaQdTdyvlLDEPLNNLDm 168 (252)
T COG4604 146 IAMVLAQDTDYVLLDEPLNNLDM 168 (252)
T ss_pred hheeeeccCcEEEecCcccccch
Confidence 44455678999999999988763
No 139
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=1.7e-12 Score=109.01 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=77.5
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..++++|| .+.++ +++|.|++|||||||++.|++.+.+ .|-..++..+... .. .
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~-~ 68 (211)
T cd03264 7 TKRYGKKRALDGVSL---------------TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLK-QP-Q 68 (211)
T ss_pred EEEECCEEEEcceeE---------------EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcccc-ch-H
Confidence 778877 57999999 89999 9999999999999999999998754 3334444322211 11 1
Q ss_pred HHHHccccCCCCCCccc----------------------HHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCC
Q 023731 93 ELARVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d----------------------~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~ 148 (278)
.......+.++++..+. .+.+.+.++.+...... ....++.+..++....+..+.+
T Consensus 69 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 69 KLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred HHHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 11111122222221111 11122223322211111 1123444445555555667789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|++.+|+.
T Consensus 149 p~llllDEPt~~LD~~ 164 (211)
T cd03264 149 PSILIVDEPTAGLDPE 164 (211)
T ss_pred CCEEEEcCCcccCCHH
Confidence 9999999999999875
No 140
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.5e-12 Score=111.86 Aligned_cols=142 Identities=16% Similarity=0.156 Sum_probs=86.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE-------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV------- 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~------- 78 (278)
||+.++ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|..
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSL---------------TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeee---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh
Confidence 466666 888977 67999999 9999999999999999999999999998753 2333
Q ss_pred -------------EEcCC-CCCCCCCHHHHHHccccCCC----CCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 79 -------------LVNQD-SFYHNLTEQELARVHEYNFD----HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 79 -------------~i~~D-~~~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
++.++ .++..++..++..+...... .......+...+.+..+...... ....++.+..++
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 155 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQR 155 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHH
Confidence 33333 22222333333222111000 00001112233344443222111 112455555556
Q ss_pred CCCCccccCCCcEEEEcccccCCchHH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
...++..+.+++++++|+|++.+|+..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 555666778999999999999998753
No 141
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.34 E-value=1.8e-12 Score=109.99 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=84.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC---
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ--- 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~--- 82 (278)
||+.++ ++.|++ ..++++|| .+.++.+++|+|++|||||||++.|++.+.+ .|-..++.
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISF---------------SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeCCceeeeccEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEc
Confidence 577777 889977 57999999 9999999999999999999999999998753 33333333
Q ss_pred -----------------CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC-Cc--cccccCCcCCcCCCCC
Q 023731 83 -----------------DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFP 142 (278)
Q Consensus 83 -----------------D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~i--~~~~~~~~~~~~~~~~ 142 (278)
+..+...+..++..+...... ...+...+.+.+..+.... .. ....++.+..++....
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred CcCCHHHHHhccEEEecccccccccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 221111122222111100000 0011122334444433221 11 1124444445555555
Q ss_pred ccccCCCcEEEEcccccCCchH
Q 023731 143 ARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 143 ~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+.+++++++|+|++.+|+.
T Consensus 150 ral~~~p~llllDEPt~~LD~~ 171 (225)
T PRK10247 150 RNLQFMPKVLLLDEITSALDES 171 (225)
T ss_pred HHHhcCCCEEEEeCCcccCCHH
Confidence 6677899999999999999874
No 142
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.34 E-value=4.6e-12 Score=119.84 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=89.7
Q ss_pred hhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 8 DMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
.||+..+ +++|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++..+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~ 67 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAAL---------------NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE 67 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 4678877 999988 46999999 9999999999999999999999999998754 3444443322
Q ss_pred C----------------------CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCcc--ccccCCcCC
Q 023731 85 F----------------------YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAVD--IPNYDFKSY 136 (278)
Q Consensus 85 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i~--~~~~~~~~~ 136 (278)
+ +..++..++..++.........++. ....+.++.+....... ...++.+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 147 (501)
T PRK10762 68 VTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQ 147 (501)
T ss_pred CCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHH
Confidence 1 1122222222211100000011122 22334455444332222 225555666
Q ss_pred cCCCCCccccCCCcEEEEcccccCCchH
Q 023731 137 KNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 137 ~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++...++..+.+++++++|+|++.+|+.
T Consensus 148 qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 148 QMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 6666666778899999999999999974
No 143
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.7e-12 Score=110.02 Aligned_cols=139 Identities=12% Similarity=0.141 Sum_probs=84.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
|++.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSL---------------TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence 677777 899987 57999999 9999999999999999999999999998754 33333333221
Q ss_pred ----------------------CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCc--cccccCCcCCc
Q 023731 86 ----------------------YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYK 137 (278)
Q Consensus 86 ----------------------~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~ 137 (278)
+...+..++..+...... ..+. ....+.++.+...... ....++.+..+
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD---DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERR 144 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc---ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHH
Confidence 111122221111000000 0111 1222333332221111 11244555555
Q ss_pred CCCCCccccCCCcEEEEcccccCCchHH
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+....+..+.+++++++|+|++.+|+..
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 145 RVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 5555566778999999999999998753
No 144
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.33 E-value=1.3e-12 Score=110.50 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=80.0
Q ss_pred ccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 10 IEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 10 ~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
|+..+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl---------------~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 66 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSL---------------SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG 66 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 33445 778863 47999999 9999999999999999999999999998753 23333332
Q ss_pred CCC-------------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcC
Q 023731 83 DSF-------------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKS 135 (278)
Q Consensus 83 D~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~ 135 (278)
.+. +...+..++..+..........-..+...+.++.+....... ...++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 146 (221)
T TIGR02211 67 QSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGE 146 (221)
T ss_pred EEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence 211 111222222111000000000000112223333332221111 12444555
Q ss_pred CcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 136 ~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++....+..+.+++++++|+|++.+|+.
T Consensus 147 ~qrv~laral~~~p~illlDEPt~~LD~~ 175 (221)
T TIGR02211 147 RQRVAIARALVNQPSLVLADEPTGNLDNN 175 (221)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCcCCHH
Confidence 55555556677899999999999999864
No 145
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.33 E-value=4.5e-12 Score=101.32 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=79.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCC-CHHHHH-------H------ccccCCC-CC--
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNL-TEQELA-------R------VHEYNFD-HP-- 105 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~-~~~~~~-------~------~~~~~~~-~~-- 105 (278)
.+..+.+++|.||||||||||.+.+++...| .|...|+..+....- +.++.. - ..+..++ +|
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 6689999999999999999999999998765 455666664433111 011100 0 0011111 11
Q ss_pred --CcccHHHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhh
Q 023731 106 --DAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE 167 (278)
Q Consensus 106 --~~~d~~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~ 167 (278)
.+.+.+++...+.....++.. ..| ..+.+..+|...++..+.+.+++++|+|++.+||.++.
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 123334444555544443322 234 67777788887888889999999999999999997663
No 146
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.33 E-value=3e-12 Score=115.77 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=96.3
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---CEEEEcCCC
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---RVVLVNQDS 84 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---~~~~i~~D~ 84 (278)
|+-++ ++.|++ .+|++||| .+.++.+++|.||||||||||.++|++.+.+. |...++..+
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl---------------~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~ 70 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSL---------------EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD 70 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEE
Confidence 34445 889988 46999999 99999999999999999999999999987653 444443322
Q ss_pred -------------------CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 85 -------------------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 85 -------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
++..++..++..++......+.........+.++.+...... ....++.+..+++...+
T Consensus 71 ~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred CCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHH
Confidence 222223333322211100000000011233334443332211 22255666666666667
Q ss_pred cccCCCcEEEEcccccCCchHHh-----------hhc-C-eEEEEecChhhh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVR-----------ELM-N-MKIFVDTDADVR 182 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~-----------~~~-d-~~I~l~~~~e~~ 182 (278)
..+.+++++++|+|++.+|+..+ +.. + ..||++.+.+..
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea 202 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA 202 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 77889999999999999997433 222 2 467777776654
No 147
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.33 E-value=2.7e-11 Score=98.84 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=34.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSF 85 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~~ 85 (278)
..++|.+|+|+|++||||||+++.|++.+.. .+..+++.|.+
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 4578899999999999999999999998852 34667766654
No 148
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.33 E-value=3.5e-12 Score=106.87 Aligned_cols=132 Identities=13% Similarity=0.187 Sum_probs=80.1
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY------ 86 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~------ 86 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+..
T Consensus 7 ~~~~~~~~~l~~~~~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 7 TKTYGKKRVLDDISL---------------HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71 (208)
T ss_pred EEEECCeEeEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHH
Confidence 778876 57999999 9999999999999999999999999998753 333334332221
Q ss_pred -------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcE
Q 023731 87 -------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 87 -------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
...+..++..+....+. .+.+...+.++.+...... ....++.+..++....+..+.++++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11222221111100000 1122333334433222111 1124455555555555667788999
Q ss_pred EEEcccccCCchHH
Q 023731 152 ILLEGILVFHDSRV 165 (278)
Q Consensus 152 iiidg~~~~~d~~~ 165 (278)
+++|+|++.+|+..
T Consensus 148 lllDEPt~~LD~~~ 161 (208)
T cd03268 148 LILDEPTNGLDPDG 161 (208)
T ss_pred EEECCCcccCCHHH
Confidence 99999999998753
No 149
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.33 E-value=2.8e-12 Score=109.87 Aligned_cols=142 Identities=14% Similarity=0.102 Sum_probs=82.2
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+.++ +++|++ ..++++|| ++.++.+++|+|++|||||||++.|++.+.+ .|...++..+.
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 65 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDL---------------NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV 65 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 345555 888987 57999999 9999999999999999999999999998754 34344443222
Q ss_pred C-----------------------CCCCHHHHHHccccCC-CCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCC
Q 023731 86 Y-----------------------HNLTEQELARVHEYNF-DHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNN 139 (278)
Q Consensus 86 ~-----------------------~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~ 139 (278)
. ...+..++..+..... ............+.++.+........ ..++.+..++.
T Consensus 66 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 145 (240)
T PRK09493 66 NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRV 145 (240)
T ss_pred CcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHH
Confidence 1 1111111111100000 00000001122233333322111111 23444445555
Q ss_pred CCCccccCCCcEEEEcccccCCchHH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
...+..+.+++++++|+|++.+|+..
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 55566678899999999999998753
No 150
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=1.6e-12 Score=108.61 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=83.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+.++ +++|++ ..|++||| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~ 65 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSF---------------TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI 65 (204)
T ss_pred CeEEEEEEEEECCEEEEecceE---------------EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence 455566 889988 46999999 9999999999999999999999999998764 33344433221
Q ss_pred --------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 86 --------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 86 --------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
+..++..++..+...... ..+.+...+.++.+...... ....++.+..++....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~ 142 (204)
T PRK13538 66 RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALAR 142 (204)
T ss_pred ccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHH
Confidence 111222222111110000 01122333344433222111 11244444455555556
Q ss_pred cccCCCcEEEEcccccCCchH
Q 023731 144 RRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+.+++++++|+|...+|+.
T Consensus 143 al~~~p~llllDEPt~~LD~~ 163 (204)
T PRK13538 143 LWLTRAPLWILDEPFTAIDKQ 163 (204)
T ss_pred HHhcCCCEEEEeCCCccCCHH
Confidence 677899999999999998864
No 151
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.33 E-value=3.3e-12 Score=108.71 Aligned_cols=134 Identities=13% Similarity=0.075 Sum_probs=78.2
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|-..++..+... ....
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~ 70 (230)
T TIGR03410 7 NVYYGQSHILRGVSL---------------EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITK-LPPH 70 (230)
T ss_pred EEEeCCeEEecceee---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC-CCHH
Confidence 788876 67999999 9999999999999999999999999998764 3444443322110 1111
Q ss_pred H-HHHccccCCCCCCccc-------------------HHHHHHHHHHhh-cCC--CccccccCCcCCcCCCCCccccCCC
Q 023731 93 E-LARVHEYNFDHPDAFD-------------------TEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNVFPARRVNPS 149 (278)
Q Consensus 93 ~-~~~~~~~~~~~~~~~d-------------------~~~~~~~l~~~~-~~~--~i~~~~~~~~~~~~~~~~~~~~~~~ 149 (278)
. ......+.++++..+. .+...+.+..+. .+. ......++.+..++....+..+.++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0 0011111122211111 111122222221 011 1111234445555555556677899
Q ss_pred cEEEEcccccCCchH
Q 023731 150 DVILLEGILVFHDSR 164 (278)
Q Consensus 150 ~iiiidg~~~~~d~~ 164 (278)
+++++|+|+..+|+.
T Consensus 151 ~illlDEPt~~LD~~ 165 (230)
T TIGR03410 151 KLLLLDEPTEGIQPS 165 (230)
T ss_pred CEEEecCCcccCCHH
Confidence 999999999999875
No 152
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.33 E-value=4.2e-12 Score=109.40 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=48.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+.++ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDL---------------EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63 (250)
T ss_pred cEEEeceEEEECCeeeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 577777 899987 57999999 9999999999999999999999999998754 3434443
No 153
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=114.84 Aligned_cols=140 Identities=14% Similarity=0.202 Sum_probs=84.7
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
|++.++ .+.|++ .+|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|-..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~ 69 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSF---------------SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGM 69 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCE
Confidence 677777 889974 47999999 9999999999999999999999999998764 343444442
Q ss_pred CCCCCCCHHHHHHccccCCCCCC-------------------cccH----HHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 84 SFYHNLTEQELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
++-. ...........|.++.+. .+.. +.+.+.+..+...... ....++.+..++
T Consensus 70 ~i~~-~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 148 (279)
T PRK13635 70 VLSE-ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR 148 (279)
T ss_pred ECCc-CcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence 2211 111111111111111110 0111 1122233332222111 112445555555
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|++.+|+.
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~ 174 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPR 174 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 55566778899999999999999974
No 154
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=4.1e-12 Score=120.30 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=89.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEcCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---~~~~~i~~D 83 (278)
||+..+ +++|++ .+|++||| .+.+|.+++|+|+||||||||++.|++.+++ .|...++..
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~ 69 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSL---------------KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGE 69 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeE---------------EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCE
Confidence 688888 999988 57999999 9999999999999999999999999998874 455545442
Q ss_pred CCC----------------------CCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCc--cccccCCcC
Q 023731 84 SFY----------------------HNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAV--DIPNYDFKS 135 (278)
Q Consensus 84 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~ 135 (278)
++. ..++..++..+...... ...++. +.+.+.++.+...... ....++.+.
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 148 (506)
T PRK13549 70 ELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP-GGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQ 148 (506)
T ss_pred ECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc-cCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHH
Confidence 221 11222222111110000 000111 2334445554433222 223556666
Q ss_pred CcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 136 ~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++...++..+.+++++++|+|++.+|+.
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~ 177 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTES 177 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 66666666778899999999999999974
No 155
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=4e-12 Score=108.87 Aligned_cols=135 Identities=10% Similarity=0.112 Sum_probs=79.8
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC------
Q 023731 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------ 85 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~------ 85 (278)
++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++..+.
T Consensus 7 ~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 7 SKTYPNGKKALKDVSL---------------SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred EEecCCccEEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh
Confidence 788875 57999999 9999999999999999999999999998754 34344433221
Q ss_pred ------------------CCCCCHHHHHHccccC--------CCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCc
Q 023731 86 ------------------YHNLTEQELARVHEYN--------FDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYK 137 (278)
Q Consensus 86 ------------------~~~~~~~~~~~~~~~~--------~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~ 137 (278)
+...+..++..+.... +........+...+.+..+....... ...++.+..+
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 1112222221111000 00000011122233343332221111 1244445555
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+...++..+.+++++++|+|++.+|+.
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~ 178 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPA 178 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 555556677899999999999999875
No 156
>PRK13947 shikimate kinase; Provisional
Probab=99.33 E-value=1.7e-11 Score=99.34 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=81.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCc-ccHHHHHHHHHHhhcCCCccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDA-FDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~l~~~~~~~~i~~ 128 (278)
-|.|+|++||||||+++.|++.| +..+++.|.+............ |...+. +-.+.-.+.+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d~~~~~~~g~~~~~~----~~~~ge~~~~~~e~~~~~~l~------- 68 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTDKEIEKMTGMTVAEI----FEKDGEVRFRSEEKLLVKKLA------- 68 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECchhhhhhcCCcHHHH----HHHhChHHHHHHHHHHHHHHh-------
Confidence 48999999999999999999998 5888999986644321111110 110000 00000011111111
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh---hhcCeEEEEecChhhhhHHhhhccccc--cCCCHHHHHH
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR---ELMNMKIFVDTDADVRLARRIRRDTVE--KGRDIATVLD 203 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~---~~~d~~I~l~~~~e~~~~R~~~R~~~~--~~~~~~~~~~ 203 (278)
.....++-.|.....++... ...+++|||+++.+.+.+|+..|.... ..........
T Consensus 69 ------------------~~~~~vi~~g~g~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~ 130 (171)
T PRK13947 69 ------------------RLKNLVIATGGGVVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIK 130 (171)
T ss_pred ------------------hcCCeEEECCCCCcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHH
Confidence 11223333333222333222 234689999999999999987764321 1112222222
Q ss_pred HHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHH
Q 023731 204 QYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRT 247 (278)
Q Consensus 204 ~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~ 247 (278)
+......+. ...||++|++++.+ ++++.+.|.+
T Consensus 131 ~~~~~r~~~--------y~~ad~~Idt~~~~---~~~i~~~I~~ 163 (171)
T PRK13947 131 ELLKEREPF--------YDFADYTIDTGDMT---IDEVAEEIIK 163 (171)
T ss_pred HHHHHHHHH--------HHhcCEEEECCCCC---HHHHHHHHHH
Confidence 222222222 23589999876543 5666666665
No 157
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.32 E-value=4.2e-12 Score=110.23 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=47.5
Q ss_pred hhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 7 VDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
-.||+..+ ++.|++ .+|+++|| .+.++.+++|+|++|||||||++.|++.+.+
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDL---------------NIHHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceE---------------EEcCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 34777777 999987 57999999 9999999999999999999999999999864
No 158
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=2.2e-12 Score=112.59 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+.++ ++.|++ ..|+++|| .+.+|.+++|.|+||||||||++.|++.+.+ .|...++..+.
T Consensus 1 ml~~~~l~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i 65 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNL---------------DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65 (271)
T ss_pred CeEEEEEEEEcCCcccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence 456666 889987 57999999 9999999999999999999999999998864 34455544332
Q ss_pred C-CCCCHHHHHHccccCCCCCC-------------------cccHH----HHHHHHHHhhcCCCc--cccccCCcCCcCC
Q 023731 86 Y-HNLTEQELARVHEYNFDHPD-------------------AFDTE----KLLSSMEKLRHGQAV--DIPNYDFKSYKNN 139 (278)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~~~-------------------~~d~~----~~~~~l~~~~~~~~i--~~~~~~~~~~~~~ 139 (278)
. .............+.++++. ..+.. .+.+.++.+...... ....++.+..++.
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl 145 (271)
T PRK13638 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRV 145 (271)
T ss_pred ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHH
Confidence 1 01111111111112222111 00111 111222222211111 1124445555555
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
...+..+.+++++++|+|++.+|+.
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~ 170 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPA 170 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHH
Confidence 5556677899999999999999974
No 159
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=3.5e-12 Score=116.58 Aligned_cols=129 Identities=11% Similarity=0.069 Sum_probs=77.3
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC--------------
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY-------------- 86 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~-------------- 86 (278)
.|+++|| .+.++.+++|.|+||||||||++.|++.+.+ .|...++..+..
T Consensus 43 ~L~~isl---------------~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 43 GVKDASL---------------AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred EEEeEEE---------------EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 5999999 9999999999999999999999999998764 344444432221
Q ss_pred -----------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEE
Q 023731 87 -----------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 87 -----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
..++..++..+.....+.+.....+...+.++.+...... ....++.+..++...++..+.++++++
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1122222222110000000000012233344443332211 112455555666666667788999999
Q ss_pred EcccccCCchHH
Q 023731 154 LEGILVFHDSRV 165 (278)
Q Consensus 154 idg~~~~~d~~~ 165 (278)
+|+|++.+|+..
T Consensus 188 LDEPts~LD~~~ 199 (400)
T PRK10070 188 MDEAFSALDPLI 199 (400)
T ss_pred EECCCccCCHHH
Confidence 999999999743
No 160
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=3.3e-12 Score=109.58 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=79.7
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC-----
Q 023731 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY----- 86 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~----- 86 (278)
++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+++ .|...++..+..
T Consensus 7 ~~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 71 (242)
T cd03295 7 TKRYGGGKKAVNNLNL---------------EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPV 71 (242)
T ss_pred EEEeCCcceEeeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChH
Confidence 677876 46999999 9999999999999999999999999998754 233444432211
Q ss_pred ----------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC--Cc--cccccCCcCCcCCCCCcccc
Q 023731 87 ----------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ--AV--DIPNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 87 ----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~--~i--~~~~~~~~~~~~~~~~~~~~ 146 (278)
...+..++..+.............+...+.++.+.... .. ....++.+..++...++..+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 72 ELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred HhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 11222222111100000000000112333444433321 11 11234445555555556677
Q ss_pred CCCcEEEEcccccCCchH
Q 023731 147 NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~ 164 (278)
.+++++++|+|++.+|+.
T Consensus 152 ~~p~llllDEPt~~LD~~ 169 (242)
T cd03295 152 ADPPLLLMDEPFGALDPI 169 (242)
T ss_pred cCCCEEEecCCcccCCHH
Confidence 899999999999999875
No 161
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.32 E-value=3.8e-12 Score=109.50 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=83.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
||+.++ ++.|++ ..++++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|-..+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINL---------------DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred CEEEEEEEEEECCeeeecceeE---------------EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 455556 888987 56999999 9999999999999999999999999999864 355555
Q ss_pred cCCCCCCC-CCHHHHHHccccCCCCCCccc------------------H----HHHHHHHHHhhcC----CCc--ccccc
Q 023731 81 NQDSFYHN-LTEQELARVHEYNFDHPDAFD------------------T----EKLLSSMEKLRHG----QAV--DIPNY 131 (278)
Q Consensus 81 ~~D~~~~~-~~~~~~~~~~~~~~~~~~~~d------------------~----~~~~~~l~~~~~~----~~i--~~~~~ 131 (278)
+..+.... ...........+.++++..+. . +...+.++.+... ... ....+
T Consensus 66 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 145 (247)
T TIGR00972 66 DGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGL 145 (247)
T ss_pred CCEEccccccchHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccC
Confidence 44332110 001111111112222211111 1 1122223332222 111 11234
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+.+..++...++..+.+++++++|+|++.+|+.
T Consensus 146 SgG~~qrv~laral~~~p~llllDEPt~~LD~~ 178 (247)
T TIGR00972 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPI 178 (247)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 444445555556667889999999999999875
No 162
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=3.3e-12 Score=112.29 Aligned_cols=140 Identities=11% Similarity=0.166 Sum_probs=83.9
Q ss_pred ccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 10 IEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
|+.++ .+.|++ .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|-..++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~ 67 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNI---------------EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIID 67 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEEC
Confidence 55666 888864 37999999 9999999999999999999999999998764 3444444
Q ss_pred CCCCCCC-CCHHHHHHccccCCCCCC-------------------cccHH----HHHHHHHHhhcC--CCcc--ccccCC
Q 023731 82 QDSFYHN-LTEQELARVHEYNFDHPD-------------------AFDTE----KLLSSMEKLRHG--QAVD--IPNYDF 133 (278)
Q Consensus 82 ~D~~~~~-~~~~~~~~~~~~~~~~~~-------------------~~d~~----~~~~~l~~~~~~--~~i~--~~~~~~ 133 (278)
..+.... ...........|.|+++. .++.. ...+.++.+... .... ...++.
T Consensus 68 g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSg 147 (287)
T PRK13637 68 GVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSG 147 (287)
T ss_pred CEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCH
Confidence 4222110 000111111122222221 01111 122333333222 1111 124455
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..++...++..+.+++++++|+|++.+|+.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~ 178 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHH
Confidence 5555655566677899999999999999974
No 163
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=3.9e-12 Score=107.05 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=81.9
Q ss_pred hccCCceeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 023731 9 MIEASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH 87 (278)
Q Consensus 9 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~ 87 (278)
|++...+++|++..+ |||| .+.+ .+++|.|++|||||||++.|++.+.+ .|...++..+...
T Consensus 1 ~~~~~l~~~~~~~~~-~vsl---------------~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 63 (214)
T cd03297 1 MLCVDIEKRLPDFTL-KIDF---------------DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFD 63 (214)
T ss_pred CceeeeeEecCCeee-CceE---------------EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccc
Confidence 466766999999777 9999 9999 99999999999999999999998764 3333343322110
Q ss_pred CC---CHHHHHHccccCCCCCCcc--------------------cHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCC
Q 023731 88 NL---TEQELARVHEYNFDHPDAF--------------------DTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFP 142 (278)
Q Consensus 88 ~~---~~~~~~~~~~~~~~~~~~~--------------------d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~ 142 (278)
.. ..........+.++.+..+ +.+...+.++.+........ ..++.+..++....
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 64 SRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred ccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHH
Confidence 00 0000001111111111100 11122333333322211111 23444444555555
Q ss_pred ccccCCCcEEEEcccccCCchHH
Q 023731 143 ARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 143 ~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+..+.+++++++|+|++.+|+..
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~ 166 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRAL 166 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH
Confidence 66778999999999999998753
No 164
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=4.5e-12 Score=107.63 Aligned_cols=141 Identities=19% Similarity=0.232 Sum_probs=93.0
Q ss_pred hccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCC
Q 023731 9 MIEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~D~ 84 (278)
|+++++ ..+|.+ .+|+++|+ .+.++..++|.|++|||||||++.|++.+.|. |...++.-+
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~---------------~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~ 67 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSL---------------EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCee
Confidence 677777 788866 46999999 99999999999999999999999999998764 445554433
Q ss_pred CCCCCCHHHHHHccccCCCCCCc-------------------ccH----HHHHHHHHHhhcCCCcccc--ccCCcCCcCC
Q 023731 85 FYHNLTEQELARVHEYNFDHPDA-------------------FDT----EKLLSSMEKLRHGQAVDIP--NYDFKSYKNN 139 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~----~~~~~~l~~~~~~~~i~~~--~~~~~~~~~~ 139 (278)
...............+.|++|+. ... .+..+.++..........+ ..+.+..+|+
T Consensus 68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRv 147 (235)
T COG1122 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRV 147 (235)
T ss_pred ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeH
Confidence 22112223333333444554432 112 2233444444443333334 4444555566
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+...+..++++++|+|++.+|+.
T Consensus 148 aIA~vLa~~P~iliLDEPta~LD~~ 172 (235)
T COG1122 148 AIAGVLAMGPEILLLDEPTAGLDPK 172 (235)
T ss_pred HhhHHHHcCCCEEEEcCCCCCCCHH
Confidence 6656667889999999999999875
No 165
>PRK08356 hypothetical protein; Provisional
Probab=99.32 E-value=1.2e-11 Score=102.71 Aligned_cols=180 Identities=18% Similarity=0.291 Sum_probs=87.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCccc----HHHHHHHHHHhhc
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRH 122 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~l~~~~~ 122 (278)
+.++|+|+||+||||||+|+.|++ + ++.+++..+.++...... ...+.|.....+. .+.+.+.=..+.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~~is~~~~~~~~~~~~---~~~~~f~~~~~~~~~~~~~~~~e~g~~~~- 75 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFCRVSCSDPLIDLLTHN---VSDYSWVPEVPFKGEPTRENLIELGRYLK- 75 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C---CCcEEeCCCccccccccc---ccccccccHHHHhhccccccHHHHHHHHH-
Confidence 347899999999999999999965 4 577888876553321111 1112221110000 001111100000
Q ss_pred CCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch-HHhhhcCeEEEEecChhhhhHHhhhccccccC--CCHH
Q 023731 123 GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS-RVRELMNMKIFVDTDADVRLARRIRRDTVEKG--RDIA 199 (278)
Q Consensus 123 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~-~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~--~~~~ 199 (278)
..|........ ....+.....+++||.-..... .+......+|||+++.+++.+|+..|+...+. .+.+
T Consensus 76 ------~~yG~~~~~~~--~~~~~~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e 147 (195)
T PRK08356 76 ------EKYGEDILIRL--AVDKKRNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFE 147 (195)
T ss_pred ------HhcCcHHHHHH--HHHHhccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHH
Confidence 01110000000 0001112235899988433211 12333468999999999999999888643221 1233
Q ss_pred HHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
++...+.. ....|. .......||++|.|+++ ++++.+.|.+++
T Consensus 148 ~~~~~~~~-~~~l~~--~~~~~~~aD~vI~N~~~----~e~~~~~i~~~~ 190 (195)
T PRK08356 148 DFLKFDEW-EEKLYH--TTKLKDKADFVIVNEGT----LEELRKKVEEIL 190 (195)
T ss_pred HHHHHHHH-HHHhhh--hhhHHHhCcEEEECCCC----HHHHHHHHHHHH
Confidence 32221111 111111 11234689999988643 455555555544
No 166
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.32 E-value=4.8e-12 Score=107.45 Aligned_cols=136 Identities=12% Similarity=0.059 Sum_probs=79.6
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh-----CC-CCEEEEcCCCCC-
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL-----HD-QRVVLVNQDSFY- 86 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l-----~~-~~~~~i~~D~~~- 86 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+ .+ .|...++..+..
T Consensus 7 ~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 71 (227)
T cd03260 7 NVYYGDKHALKDISL---------------DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71 (227)
T ss_pred EEEcCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhh
Confidence 788877 57999999 99999999999999999999999999998 53 343444332211
Q ss_pred ---------------------CCCCHHHHHHccccCCCCCCcc-cHHHHHHHHHHhhcCCCc--c--ccccCCcCCcCCC
Q 023731 87 ---------------------HNLTEQELARVHEYNFDHPDAF-DTEKLLSSMEKLRHGQAV--D--IPNYDFKSYKNNV 140 (278)
Q Consensus 87 ---------------------~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~l~~~~~~~~i--~--~~~~~~~~~~~~~ 140 (278)
...+..++..+....+...... ......+.++.+...... . ...++.+..++..
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 72 LDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred cchHHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHH
Confidence 0112211111110000000000 011223333333222111 1 1244445555555
Q ss_pred CCccccCCCcEEEEcccccCCchHH
Q 023731 141 FPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..+..+.+++++++|+|++.+|+..
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~ 176 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPIS 176 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHH
Confidence 5566778999999999999998753
No 167
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.32 E-value=4.8e-12 Score=107.44 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=43.2
Q ss_pred ccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 10 IEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 10 ~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
|+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSF---------------SIKKGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCcee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 44455 778865 46999999 9999999999999999999999999998753
No 168
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.32 E-value=2.1e-12 Score=107.98 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=79.3
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC--CCCC
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY--HNLT 90 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~--~~~~ 90 (278)
++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|-..++..+.. ....
T Consensus 5 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 5 SKKFGDKIILDDLNL---------------TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred EEEECCEEEEeceEE---------------EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhh
Confidence 778876 57999999 9999999999999999999999999998764 343444332211 0000
Q ss_pred HH-HHHHccccCCCCCCcc----------------------cHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccc
Q 023731 91 EQ-ELARVHEYNFDHPDAF----------------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 91 ~~-~~~~~~~~~~~~~~~~----------------------d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~ 145 (278)
.. .......+.++.+..+ ..+.+.+.++.+...... ....++.+..++....+..
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred HHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence 00 0011111112211111 011222333333222111 1124444555555555667
Q ss_pred cCCCcEEEEcccccCCchH
Q 023731 146 VNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~ 164 (278)
+.+++++++|+|.+.+|+.
T Consensus 150 ~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPK 168 (206)
T ss_pred HcCCCEEEEeCCcCCCCHH
Confidence 7899999999999999864
No 169
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.32 E-value=6.8e-12 Score=108.42 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=84.1
Q ss_pred hhccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----CCEEEEc
Q 023731 8 DMIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVN 81 (278)
Q Consensus 8 ~~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-----~~~~~i~ 81 (278)
.+|+.++ ++.|+...|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 3 ~~l~~~~l~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~ 67 (254)
T PRK10418 3 QQIELRNIALQAAQPLVHGVSL---------------TLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLD 67 (254)
T ss_pred cEEEEeCeEEEeccceecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEEC
Confidence 4567777 88885567999999 9999999999999999999999999998754 3444444
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCC----------------------cccHHHHHHHHHHhhcCCC---c--cccccCCc
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPD----------------------AFDTEKLLSSMEKLRHGQA---V--DIPNYDFK 134 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~----------------------~~d~~~~~~~l~~~~~~~~---i--~~~~~~~~ 134 (278)
..+.-. ... ......|.++++. ....+.+.+.++.+..... . ....++.+
T Consensus 68 g~~i~~-~~~--~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G 144 (254)
T PRK10418 68 GKPVAP-CAL--RGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGG 144 (254)
T ss_pred Ceeccc-ccc--ccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHH
Confidence 322110 000 0000111111110 0111223334444332210 1 11244555
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++....+..+.+++++++|+|++.+|+.
T Consensus 145 q~qrv~laral~~~p~lLlLDEPt~~LD~~ 174 (254)
T PRK10418 145 MLQRMMIALALLCEAPFIIADEPTTDLDVV 174 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 555555556677899999999999999875
No 170
>PRK07261 topology modulation protein; Provisional
Probab=99.32 E-value=2.8e-12 Score=104.21 Aligned_cols=104 Identities=17% Similarity=0.287 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~ 129 (278)
.|+|+|++||||||||+.|++.+ +..+++.|.++..- .+. ..+.+.+...+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~---~~~~i~~D~~~~~~-----------~~~---~~~~~~~~~~~~~~--------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY---NCPVLHLDTLHFQP-----------NWQ---ERDDDDMIADISNF--------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeEecCCEEecc-----------ccc---cCCHHHHHHHHHHH---------
Confidence 58999999999999999999987 46778888765210 011 11222222222211
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccC-CchHHhhhcCeEEEEecChhhhhHHhhhccccccCC
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVF-HDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGR 196 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~-~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~ 196 (278)
+.... +|+||.+.. .-+...+.+|.+||++.|...++.|+++|....++.
T Consensus 56 ----------------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~ 106 (171)
T PRK07261 56 ----------------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGK 106 (171)
T ss_pred ----------------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 22233 899998865 224455689999999999999999999997544443
No 171
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.31 E-value=5.6e-12 Score=108.74 Aligned_cols=136 Identities=14% Similarity=0.279 Sum_probs=87.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----------C
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----------R 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~----------~ 76 (278)
||+..+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+. .
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~---------------~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~ 68 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSL---------------ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLR 68 (251)
T ss_pred EEEEeceEEEECCceEEEeEEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccC
Confidence 567677 899987 57999999 99999999999999999999999999987541 2
Q ss_pred EEEEcCCCCC-CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCCCcEEE
Q 023731 77 VVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 77 ~~~i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
+.++.++..+ ..++.. ...... +. + ....+.+.+.++.+....... ...++.+..++...++..+.++++++
T Consensus 69 i~~v~q~~~~~~~l~~~-~~~~~~--~~-~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 143 (251)
T PRK09544 69 IGYVPQKLYLDTTLPLT-VNRFLR--LR-P-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV 143 (251)
T ss_pred EEEeccccccccccChh-HHHHHh--cc-c-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4555555322 111111 111100 11 1 122234445555544332222 12455555556555566778999999
Q ss_pred EcccccCCchH
Q 023731 154 LEGILVFHDSR 164 (278)
Q Consensus 154 idg~~~~~d~~ 164 (278)
+|+|++.+|+.
T Consensus 144 LDEPt~~LD~~ 154 (251)
T PRK09544 144 LDEPTQGVDVN 154 (251)
T ss_pred EeCCCcCCCHH
Confidence 99999999874
No 172
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.31 E-value=5.9e-12 Score=108.92 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=85.9
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV-------- 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~-------- 77 (278)
+|+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|.
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl---------------~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDL---------------HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH
Confidence 356666 888987 57999999 9999999999999999999999999998754 232
Q ss_pred -------EEEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccC
Q 023731 78 -------VLVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 78 -------~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~ 147 (278)
.++.++. ++...+..++..+.. ... ......+.++.+........ ..++.+..++....+..+.
T Consensus 77 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~-----~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 77 AEAREDTRLMFQDARLLPWKKVIDNVGLGL-----KGQ-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred HHhhCceEEEecCccCCCCCcHHHHHHhcc-----cch-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 2333332 222233333222210 000 11233344444433221111 2445555555555566778
Q ss_pred CCcEEEEcccccCCchHH
Q 023731 148 PSDVILLEGILVFHDSRV 165 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~~ 165 (278)
+++++++|+|++.+|+..
T Consensus 151 ~p~lllLDEPt~~LD~~~ 168 (257)
T PRK11247 151 RPGLLLLDEPLGALDALT 168 (257)
T ss_pred CCCEEEEeCCCCCCCHHH
Confidence 999999999999999753
No 173
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=5.5e-12 Score=108.87 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=52.5
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCE
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRV 77 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~ 77 (278)
|.-||+..+ ++.|++ ..|+++|| .+.+|.+++|.|+||||||||++.|++.+.+ .|.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~ 65 (253)
T PRK14267 1 MKFAIETVNLRVYYGSNHVIKGVDL---------------KIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGE 65 (253)
T ss_pred CcceEEEEeEEEEeCCeeeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceE
Confidence 344677777 899987 57999999 9999999999999999999999999999864 455
Q ss_pred EEEcCC
Q 023731 78 VLVNQD 83 (278)
Q Consensus 78 ~~i~~D 83 (278)
..++..
T Consensus 66 i~~~g~ 71 (253)
T PRK14267 66 VRLFGR 71 (253)
T ss_pred EEECCE
Confidence 555543
No 174
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.31 E-value=2.5e-12 Score=124.68 Aligned_cols=138 Identities=16% Similarity=0.241 Sum_probs=94.1
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEE
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVL 79 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~ 79 (278)
..++||+|++...+.|....-.-++++|..|+|+|.||||||||+|.|.+.+.| +.+.+
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence 347777777777766666666669999999999999999999999999999876 35788
Q ss_pred EcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHH---------HhhcCCCccc----cccCCcCCcCCCCCcccc
Q 023731 80 VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 80 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~---------~~~~~~~i~~----~~~~~~~~~~~~~~~~~~ 146 (278)
+.+|++...-+..++-.++. |+.- .+.+.+++. ....|=...+ ...+.+..++...++..+
T Consensus 552 V~Q~~~Lf~gSI~eNi~l~~-----p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 552 VLQDPFLFSGSIRENIALGN-----PEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred EcccchhhcCcHHHHHhcCC-----CCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 88888886666666655433 3322 222222222 2222111111 123444445555667778
Q ss_pred CCCcEEEEcccccCCchH
Q 023731 147 NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~ 164 (278)
.+|+++++|++++.+|++
T Consensus 626 ~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 626 SKPKILLLDEATSALDPE 643 (709)
T ss_pred cCCCEEEEeCcccccCHh
Confidence 999999999999998875
No 175
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=3.3e-12 Score=103.97 Aligned_cols=122 Identities=13% Similarity=0.199 Sum_probs=81.1
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..|+++|| ...++.+++|+|++|||||||++.|++.+++ .|...++..+.- ... .
T Consensus 7 ~~~~~~~~~l~~~~~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~-~ 69 (173)
T cd03230 7 SKRYGKKTALDDISL---------------TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK-KEP-E 69 (173)
T ss_pred EEEECCeeeeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc-cch-H
Confidence 677876 56999999 9999999999999999999999999998754 444555443221 111 1
Q ss_pred HHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.......+.++++..+......+.+. ++.+..++....+..+.+++++++|+|++.+|+..
T Consensus 70 ~~~~~i~~~~q~~~~~~~~tv~~~~~------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 130 (173)
T cd03230 70 EVKRRIGYLPEEPSLYENLTVRENLK------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPES 130 (173)
T ss_pred hhhccEEEEecCCccccCCcHHHHhh------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 12222334455443332212222221 44555556555667788999999999999998753
No 176
>COG4240 Predicted kinase [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=101.43 Aligned_cols=118 Identities=22% Similarity=0.375 Sum_probs=89.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEcCCCCCCCCCHHHHHHcccc------CCCCCCcccHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSFYHNLTEQELARVHEY------NFDHPDAFDTEKLL 114 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---~~~~~i~~D~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~~~ 114 (278)
...+|.+++|+||.||||||++-.|...|.. .....++.|+||. +......+.+. .-+.|+..|.....
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl--thadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL--THADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc--chHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 4567999999999999999999999888753 3468899999994 44333322211 24568899999999
Q ss_pred HHHHHhhcCC-CccccccCC----cCCcCCCCCccccCCCcEEEEcccccCCch
Q 023731 115 SSMEKLRHGQ-AVDIPNYDF----KSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 115 ~~l~~~~~~~-~i~~~~~~~----~~~~~~~~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
+.|+.+..++ .+.+|.|+. +.++|.....+...+.+++|+||++.+..|
T Consensus 124 nVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 124 NVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred HHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 9999999877 458899998 555564444455556899999999987765
No 177
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.8e-12 Score=113.68 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=87.6
Q ss_pred hhhhccCCc-eeeeCC-------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC
Q 023731 6 VVDMIEASS-GVHFSG-------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR 76 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~ 76 (278)
|..|++.++ +++|++ ..|++||| .+.+|.+++|+|++|||||||.+.|++.+.+ .|
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 65 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNL---------------EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG 65 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 445788777 999963 58999999 9999999999999999999999999999764 35
Q ss_pred EEEEcCCCCCCCCCHHHHHHccccCCCCCC-------------------cccH----HHHHHHHHHhhcCCCc--ccccc
Q 023731 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNY 131 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~----~~~~~~l~~~~~~~~i--~~~~~ 131 (278)
...++..+...............+.++.+. .... +...+.++.+...... ....+
T Consensus 66 ~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 145 (280)
T PRK13633 66 KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLL 145 (280)
T ss_pred eEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 455554332110000111111122222211 0011 1122223332222111 11244
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+.+..++....+..+.+++++++|+|++.+|+..
T Consensus 146 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~ 179 (280)
T PRK13633 146 SGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179 (280)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 5555555555566778999999999999999743
No 178
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.3e-12 Score=108.66 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=85.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE-------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV------- 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~------- 78 (278)
||+.++ ++.|++ ..|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|..
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~ 66 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSL---------------SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI 66 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeee---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh
Confidence 456666 888987 56999999 9999999999999999999999999998753 2322
Q ss_pred -------------EEcCCCC-CCCCCHHHHHHccccC----CCCCCcccHHHHHHHHHHhhcCCC--ccccccCCcCCcC
Q 023731 79 -------------LVNQDSF-YHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKN 138 (278)
Q Consensus 79 -------------~i~~D~~-~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~ 138 (278)
++.++.. +..++..++..++... +......+...+.+.+..+..... .....++.+..++
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 146 (255)
T PRK11231 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQR 146 (255)
T ss_pred HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHH
Confidence 3333321 1222333322221100 110000011223333333322211 1112455555556
Q ss_pred CCCCccccCCCcEEEEcccccCCchHHh
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
...++..+.+++++++|+|+..+|+...
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 5555667789999999999999987533
No 179
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=3.8e-12 Score=111.97 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=84.3
Q ss_pred hccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 9 MIEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
||+..+ .+.|++ .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl---------------~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDL---------------EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTV 65 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEE---------------EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 455566 788863 37999999 9999999999999999999999999998764 344545
Q ss_pred cCCCCCC---CCCHHHHHHccccCCCCCC--cc-----------------cHH----HHHHHHHHhhcCC-Cccc--ccc
Q 023731 81 NQDSFYH---NLTEQELARVHEYNFDHPD--AF-----------------DTE----KLLSSMEKLRHGQ-AVDI--PNY 131 (278)
Q Consensus 81 ~~D~~~~---~~~~~~~~~~~~~~~~~~~--~~-----------------d~~----~~~~~l~~~~~~~-~i~~--~~~ 131 (278)
+..+... ............+.|+++. .+ ... ...+.+..+.... .... ..+
T Consensus 66 ~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 145 (288)
T PRK13643 66 GDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL 145 (288)
T ss_pred CCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccC
Confidence 4432210 0111111222233333321 01 011 1222333322211 1111 234
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+.+..++...++..+.+++++++|+|++.+|+..
T Consensus 146 SgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 4444455555566778999999999999999743
No 180
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.31 E-value=2.1e-12 Score=106.73 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=74.1
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCC-CCCHHHHHHcc
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH-NLTEQELARVH 98 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~-~~~~~~~~~~~ 98 (278)
..|++||| ++.++.+++|.|++|||||||++.|++.+.+ .|...++..+... ...........
T Consensus 6 ~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 70 (190)
T TIGR01166 6 EVLKGLNF---------------AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRV 70 (190)
T ss_pred ceecceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhE
Confidence 57999999 9999999999999999999999999998764 3444444322210 00000111111
Q ss_pred ccCCCCCC--c-----------------ccHH----HHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEE
Q 023731 99 EYNFDHPD--A-----------------FDTE----KLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 99 ~~~~~~~~--~-----------------~d~~----~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
.+.++++. . .+.+ ...+.++.+...... ....++.+..++....+..+.++++++
T Consensus 71 ~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred EEEecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11122110 0 1111 122223322221111 112444455555555566778999999
Q ss_pred EcccccCCchH
Q 023731 154 LEGILVFHDSR 164 (278)
Q Consensus 154 idg~~~~~d~~ 164 (278)
+|+|++.+|+.
T Consensus 151 lDEPt~~LD~~ 161 (190)
T TIGR01166 151 LDEPTAGLDPA 161 (190)
T ss_pred EcCCcccCCHH
Confidence 99999999875
No 181
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.31 E-value=4.2e-12 Score=106.69 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=79.1
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCC-CCCH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH-NLTE 91 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~-~~~~ 91 (278)
++.|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+++ .|-..++..+... ....
T Consensus 7 ~~~~~~~~~l~~~s~---------------~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 7 HKSFGDFHVLKGIDL---------------TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred EEEECCeEeecCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhH
Confidence 788877 57999999 9999999999999999999999999998754 3434444322210 0000
Q ss_pred HHHHHccccCCCCCCc-------------------ccH----HHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCcccc
Q 023731 92 QELARVHEYNFDHPDA-------------------FDT----EKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 92 ~~~~~~~~~~~~~~~~-------------------~d~----~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~ 146 (278)
........+.++++.. ++. +...+.+..+........ ..++.+..++....+..+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred HHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 0111111111111110 111 112223333222111111 244445555555556677
Q ss_pred CCCcEEEEcccccCCchHH
Q 023731 147 NPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~~ 165 (278)
.+++++++|+|++.+|+..
T Consensus 152 ~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 152 MNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred cCCCEEEEeCCccCCCHHH
Confidence 8899999999999998753
No 182
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.30 E-value=6.8e-12 Score=107.55 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=84.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC-
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~- 84 (278)
||+..+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||.+.|++.+.+ .|...++..+
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSL---------------YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence 566666 889987 46999999 9999999999999999999999999998753 2333333321
Q ss_pred ---------------------CCCCCCHHHHHHccccCCC--------CCCcccHHHHHHHHHHhhcCCCc--cccccCC
Q 023731 85 ---------------------FYHNLTEQELARVHEYNFD--------HPDAFDTEKLLSSMEKLRHGQAV--DIPNYDF 133 (278)
Q Consensus 85 ---------------------~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~ 133 (278)
++..++..++..+...... ....-+...+.+.++.+...... ....++.
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSH 146 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCH
Confidence 1112222222221110000 00000111233334433322211 1124445
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+..++...++..+.+++++++|+|++.+|+..
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~ 178 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEE 178 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHH
Confidence 55555555566778899999999999998753
No 183
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=4e-12 Score=111.28 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=82.9
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
|++.++ .+.|+ + .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..+
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINF---------------IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 466666 89995 3 57999999 9999999999999999999999999998764 2334443322
Q ss_pred CCCCCCHHHHHHccccCCCCCC-------------------cccHH----HHHHHHHHhhcCCCcc--ccccCCcCCcCC
Q 023731 85 FYHNLTEQELARVHEYNFDHPD-------------------AFDTE----KLLSSMEKLRHGQAVD--IPNYDFKSYKNN 139 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~~----~~~~~l~~~~~~~~i~--~~~~~~~~~~~~ 139 (278)
... ...........+.++++. .++.+ ...+.++.+....... ...++.+..++.
T Consensus 68 ~~~-~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl 146 (277)
T PRK13652 68 ITK-ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRV 146 (277)
T ss_pred CCc-CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHH
Confidence 111 111111111112222211 11111 1222333322221111 124444445555
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
...+..+.+++++++|+|+..+|+.
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~ 171 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQ 171 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHH
Confidence 5556677899999999999999964
No 184
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.6e-12 Score=113.41 Aligned_cols=137 Identities=10% Similarity=0.133 Sum_probs=83.5
Q ss_pred hccCCc-eeeeC--C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 9 MIEASS-GVHFS--G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~--~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
|++..+ ++.|+ + ..|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 71 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSF---------------EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGI 71 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 566777 88995 3 57999999 9999999999999999999999999999764 333444332
Q ss_pred CC----------------------CCCCCHHHHHHccccCCCCCCcccHH----HHHHHHHHhhcCCCc--cccccCCcC
Q 023731 84 SF----------------------YHNLTEQELARVHEYNFDHPDAFDTE----KLLSSMEKLRHGQAV--DIPNYDFKS 135 (278)
Q Consensus 84 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~l~~~~~~~~i--~~~~~~~~~ 135 (278)
+. +...+..++..+.... ..++.. ...+.++.+...... ....++.+.
T Consensus 72 ~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 147 (271)
T PRK13632 72 TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLEN----KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQ 147 (271)
T ss_pred ecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHH----cCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHH
Confidence 21 1111222211111000 001111 122333333222111 112455555
Q ss_pred CcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 136 ~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++....+..+.+++++++|+|+..+|+.
T Consensus 148 ~qrl~laral~~~p~lllLDEP~~gLD~~ 176 (271)
T PRK13632 148 KQRVAIASVLALNPEIIIFDESTSMLDPK 176 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 55655556677899999999999999874
No 185
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=2.1e-12 Score=104.97 Aligned_cols=120 Identities=12% Similarity=0.214 Sum_probs=81.0
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLT 90 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~ 90 (278)
+++|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+.. ...
T Consensus 7 ~~~~~~~~~~~l~~i~~---------------~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~-~~~ 70 (171)
T cd03228 7 SFSYPGRPKPVLKDVSL---------------TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR-DLD 70 (171)
T ss_pred EEEcCCCCcccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh-hcC
Confidence 677876 57999999 9999999999999999999999999999864 354555543321 112
Q ss_pred HHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.........+.++.+..++. ...+.+ ++.+..++....+..+.+++++++|+|++.+|+.
T Consensus 71 ~~~~~~~i~~~~~~~~~~~~-t~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~ 130 (171)
T cd03228 71 LESLRKNIAYVPQDPFLFSG-TIRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130 (171)
T ss_pred HHHHHhhEEEEcCCchhccc-hHHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 22222223444555433321 222222 4455555555556677899999999999999864
No 186
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.30 E-value=7.2e-12 Score=103.09 Aligned_cols=175 Identities=13% Similarity=0.156 Sum_probs=88.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHc-cccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARV-HEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
.++++|.|+||||||||||++.|.+.++ .+ ......-- ...++.+.- ..|.|- ..+.| ...+..+.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~--~~-~~~v~~TT--R~~r~gE~~G~dY~fv-----s~~~F---~~~i~~~~ 68 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP--DF-LFSISCTT--RAPRPGDEEGKTYFFL-----TIEEF---KKGIADGE 68 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC--cc-ccccCccC--CCCCCCCCCCceeEeC-----CHHHH---HHHHHcCC
Confidence 3678999999999999999999998763 21 11110000 000000000 112222 22222 23334455
Q ss_pred CccccccCCcCCcCCC-CCccccCCCcEEEEcccccCCchHHhhhc-C--eEEEEecC-hhhhhHHhhhccccccCCCHH
Q 023731 125 AVDIPNYDFKSYKNNV-FPARRVNPSDVILLEGILVFHDSRVRELM-N--MKIFVDTD-ADVRLARRIRRDTVEKGRDIA 199 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~-~~~~~~~~~~iiiidg~~~~~d~~~~~~~-d--~~I~l~~~-~e~~~~R~~~R~~~~~~~~~~ 199 (278)
.+....|......-.. .....+..+.++|+|.-..+. ..+...+ + ..|||.+| .+.+.+|+.+|+.... ..++
T Consensus 69 f~e~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~-e~i~ 146 (186)
T PRK14737 69 FLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSE-ESIE 146 (186)
T ss_pred eEEEEEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCH-HHHH
Confidence 5544433322211111 112234567788887654443 3344443 3 68999985 5777888888863221 1233
Q ss_pred HHHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 200 TVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 200 ~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
..++....+. .....+|++|.|+ +. +.+..+++..+
T Consensus 147 ~Rl~~~~~e~---------~~~~~~D~vI~N~-dl----e~a~~ql~~ii 182 (186)
T PRK14737 147 KRIENGIIEL---------DEANEFDYKIIND-DL----EDAIADLEAII 182 (186)
T ss_pred HHHHHHHHHH---------hhhccCCEEEECc-CH----HHHHHHHHHHH
Confidence 3332211111 1257899999998 43 44444444443
No 187
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=8.5e-12 Score=104.74 Aligned_cols=135 Identities=14% Similarity=0.091 Sum_probs=80.4
Q ss_pred eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE---------------
Q 023731 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV--------------- 78 (278)
Q Consensus 15 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~--------------- 78 (278)
++.|++... ++|| .+.++.+++|.|++|||||||++.|++.+++ .|..
T Consensus 7 ~~~~~~~~~-~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 7 RFSYGEQPM-HFDL---------------TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADR 70 (211)
T ss_pred EEEeCCEec-ceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHc
Confidence 778877444 9999 9999999999999999999999999998764 2333
Q ss_pred ---EEcCCCCC-CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEE
Q 023731 79 ---LVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVI 152 (278)
Q Consensus 79 ---~i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~ii 152 (278)
++.++... ...+..++..+.............+.+.+.++.+...... ....++.+..++...++..+.+++++
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ll 150 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 33333221 2223333322211100000001122333444443322211 11245555555655556677899999
Q ss_pred EEcccccCCchHH
Q 023731 153 LLEGILVFHDSRV 165 (278)
Q Consensus 153 iidg~~~~~d~~~ 165 (278)
++|+|++.+|+..
T Consensus 151 llDEP~~~LD~~~ 163 (211)
T cd03298 151 LLDEPFAALDPAL 163 (211)
T ss_pred EEcCCcccCCHHH
Confidence 9999999998753
No 188
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=4.2e-12 Score=108.56 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=83.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++..+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSL---------------HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEec
Confidence 566666 888976 57999999 9999999999999999999999999998754 23333333221
Q ss_pred ----------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh-cCC--CccccccCCcCCcCCC
Q 023731 86 ----------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR-HGQ--AVDIPNYDFKSYKNNV 140 (278)
Q Consensus 86 ----------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~--~i~~~~~~~~~~~~~~ 140 (278)
+...+..++..+... +..... ....+.+.+..+. ... ......++.+..++..
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~ 147 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGF-FAERDQ-FQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLA 147 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhh-ccChhH-HHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHH
Confidence 111222222211110 000000 0111222222221 110 1111245555555655
Q ss_pred CCccccCCCcEEEEcccccCCchHH
Q 023731 141 FPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..+..+.+++++++|+|+..+|+..
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~ 172 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPII 172 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHH
Confidence 5566778999999999999998753
No 189
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.30 E-value=7.6e-12 Score=107.82 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=45.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+|+.++ ++.|++ ..+++||| .+.+|.+++|+|++|||||||++.|++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNL---------------EIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eEEEEeeEEEECCeeeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 466666 889987 56999999 999999999999999999999999999875
No 190
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=5.9e-12 Score=108.00 Aligned_cols=142 Identities=12% Similarity=0.115 Sum_probs=83.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+.++ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITL---------------DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence 456666 889987 57999999 9999999999999999999999999998754 34444444332
Q ss_pred C--CCC---CHHHHHHccccCCCCCCccc-----------------------HHHHHHHHHHhhcCCCccc--cccCCcC
Q 023731 86 Y--HNL---TEQELARVHEYNFDHPDAFD-----------------------TEKLLSSMEKLRHGQAVDI--PNYDFKS 135 (278)
Q Consensus 86 ~--~~~---~~~~~~~~~~~~~~~~~~~d-----------------------~~~~~~~l~~~~~~~~i~~--~~~~~~~ 135 (278)
. ... ..........+.++.+..+. .....+.++.+........ ..++.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 146 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQ 146 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHH
Confidence 1 000 00011111111122111110 0112222333222211111 2344444
Q ss_pred CcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 136 YKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 136 ~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.++....+..+.+++++++|+|++.+|+..
T Consensus 147 ~qrv~laral~~~p~llilDEPt~~LD~~~ 176 (242)
T PRK11124 147 QQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCHHH
Confidence 555555566778999999999999998753
No 191
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.30 E-value=7.1e-11 Score=93.94 Aligned_cols=171 Identities=18% Similarity=0.280 Sum_probs=96.4
Q ss_pred CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHH
Q 023731 36 PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL 113 (278)
Q Consensus 36 ~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 113 (278)
..+........++.+|+++|.|||||||+|++|.+.|.. ..+.++++|+.-+.+. .+..|+. +.=
T Consensus 11 ~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-------~dLgFs~------edR 77 (197)
T COG0529 11 TKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-------RDLGFSR------EDR 77 (197)
T ss_pred CHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-------CCCCCCh------HHH
Confidence 444555557788999999999999999999999999864 3468889988665542 1223332 222
Q ss_pred HHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc---hHHhhhcC----eEEEEecChhhhhHHh
Q 023731 114 LSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELMN----MKIFVDTDADVRLARR 186 (278)
Q Consensus 114 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d---~~~~~~~d----~~I~l~~~~e~~~~R~ 186 (278)
.+.++.+.+ ....+.+..++++....+-+. ...++.+. +-|||++|.++|.+|-
T Consensus 78 ~eniRRvae-------------------vAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 78 IENIRRVAE-------------------VAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHHHHHHH-------------------HHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence 233332221 122344455555555443322 22333332 7899999999998872
Q ss_pred hhccccccCCCHHHHHHHHhhcccccccccccc--ccccccEEeeCCCCcHHHHHHHHHHHHHhhccC
Q 023731 187 IRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP--TKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQH 252 (278)
Q Consensus 187 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~~~ 252 (278)
-| ..-++-....-+.+.-.=.| ....+|++++++..+ +++.+++|...|.++
T Consensus 139 pK-----------GLYkKAr~GeI~~fTGid~pYE~P~~Pel~l~t~~~~---vee~v~~i~~~l~~~ 192 (197)
T COG0529 139 PK-----------GLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRNS---VEECVEQILDLLKER 192 (197)
T ss_pred ch-----------HHHHHHHcCCCCCCcCCCCCCCCCCCCeeEeccccCC---HHHHHHHHHHHHHhc
Confidence 21 11111111111221111112 257899999877554 455555555555433
No 192
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.30 E-value=6.2e-12 Score=107.56 Aligned_cols=135 Identities=16% Similarity=0.146 Sum_probs=80.0
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc-----------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN----------- 81 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~----------- 81 (278)
++.|++ ..|+++|| ++.++.+++|.|++|||||||.+.|++.+.+ .|...++
T Consensus 7 ~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 7 SKRFGSFQALDDVNL---------------EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD 71 (237)
T ss_pred EEEECCeeeeeeEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhh
Confidence 778877 46999999 9999999999999999999999999998754 2323333
Q ss_pred -------CCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcE
Q 023731 82 -------QDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 82 -------~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
++. ++...+..++..+.............+.+.+.+..+........ ..++.+..++....+..+.++++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 221 11222222222211110000001111223334444332211111 24455555555555666789999
Q ss_pred EEEcccccCCchH
Q 023731 152 ILLEGILVFHDSR 164 (278)
Q Consensus 152 iiidg~~~~~d~~ 164 (278)
+++|+|...+|+.
T Consensus 152 lllDEP~~~LD~~ 164 (237)
T TIGR00968 152 LLLDEPFGALDAK 164 (237)
T ss_pred EEEcCCcccCCHH
Confidence 9999999999874
No 193
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=4.3e-12 Score=111.77 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=83.8
Q ss_pred ccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 10 IEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
++.++ ++.|++ .+|+|||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 67 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNV---------------SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIG 67 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 55566 888863 47999999 9999999999999999999999999998764 3444443
Q ss_pred CCCCCC---CCCHHHHHHccccCCCCCC--c-----------------ccH----HHHHHHHHHhhcCCCc---cccccC
Q 023731 82 QDSFYH---NLTEQELARVHEYNFDHPD--A-----------------FDT----EKLLSSMEKLRHGQAV---DIPNYD 132 (278)
Q Consensus 82 ~D~~~~---~~~~~~~~~~~~~~~~~~~--~-----------------~d~----~~~~~~l~~~~~~~~i---~~~~~~ 132 (278)
..+... ............|.|+++. . .+. +...+.++.+...... ....++
T Consensus 68 g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (290)
T PRK13634 68 ERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147 (290)
T ss_pred CEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence 322110 0001111111222233221 0 111 1222333333322111 112445
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+..+++..++..+.+++++++|+|++.+|+..
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 555555555666778999999999999999743
No 194
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.30 E-value=5.9e-12 Score=109.61 Aligned_cols=143 Identities=12% Similarity=0.148 Sum_probs=85.3
Q ss_pred hhhccCCc-eeeeCC----------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-
Q 023731 7 VDMIEASS-GVHFSG----------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD- 74 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~----------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~- 74 (278)
..||+.++ +++|++ .+|++||| .+.++.+++|+|+||||||||++.|++.+.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 66 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSF---------------TLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeE---------------EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 45778887 899962 47999999 9999999999999999999999999999864
Q ss_pred CCEEEEcCCCCCCCCCHHHHHHccccCCCCCC---------------------cccH----HHHHHHHHHhhcC-CCc--
Q 023731 75 QRVVLVNQDSFYHNLTEQELARVHEYNFDHPD---------------------AFDT----EKLLSSMEKLRHG-QAV-- 126 (278)
Q Consensus 75 ~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---------------------~~d~----~~~~~~l~~~~~~-~~i-- 126 (278)
.|...++..+... ...........+.++++. .+.. +...+.++.+... ...
T Consensus 67 ~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (267)
T PRK15112 67 SGELLIDDHPLHF-GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145 (267)
T ss_pred CCEEEECCEECCC-CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc
Confidence 3444444322210 000000000111111110 0111 1223334433321 111
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
....++.+..+++..++..+.+++++++|+|++.+|+..
T Consensus 146 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred CchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 112455555555555566778999999999999998753
No 195
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=7.1e-12 Score=106.82 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=82.8
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE--------
Q 023731 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV-------- 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~-------- 78 (278)
||+.++ ++.|++.. .+||| .+.++.+++|+|++|||||||++.|++.+.+ .|..
T Consensus 1 ~l~~~~l~~~~~~~~-~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 1 MLKLTDITWLYHHLP-MRFDL---------------TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHT 64 (232)
T ss_pred CeEEEEEEEEECCcc-ceeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecC
Confidence 355556 88898743 48999 9999999999999999999999999998754 2323
Q ss_pred ----------EEcCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccc
Q 023731 79 ----------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARR 145 (278)
Q Consensus 79 ----------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~ 145 (278)
++.++. ++..++..++..+...........+.....+.++.+........ ..++.+..++....+..
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 333332 22223333322211100000001112233344444332221111 24555555555555667
Q ss_pred cCCCcEEEEcccccCCchH
Q 023731 146 VNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~ 164 (278)
+.+++++++|+|++.+|+.
T Consensus 145 ~~~p~lllLDEP~~gLD~~ 163 (232)
T PRK10771 145 VREQPILLLDEPFSALDPA 163 (232)
T ss_pred hcCCCEEEEeCCcccCCHH
Confidence 7899999999999999874
No 196
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=8.3e-12 Score=107.03 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=82.1
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY 86 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~ 86 (278)
++..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..+..
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISV---------------KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhh
Confidence 55556 888976 57999999 9999999999999999999999999998754 343444332211
Q ss_pred CCCCHHHHHHccccCCCCCCc-----------------ccHHHHHHHHHHhhcCC-C--ccccccCCcCCcCCCCCcccc
Q 023731 87 HNLTEQELARVHEYNFDHPDA-----------------FDTEKLLSSMEKLRHGQ-A--VDIPNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~~l~~~~~~~-~--i~~~~~~~~~~~~~~~~~~~~ 146 (278)
. ...........+.++++.. .......+.+..+.... . .....++.+..++....+..+
T Consensus 69 ~-~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~ 147 (241)
T PRK14250 69 T-IDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA 147 (241)
T ss_pred h-cChHHhhhcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 0 0000000001111111111 11122333344332211 0 111244445555555556667
Q ss_pred CCCcEEEEcccccCCchH
Q 023731 147 NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~ 164 (278)
.+++++++|+|++.+|+.
T Consensus 148 ~~p~llllDEPt~~LD~~ 165 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPT 165 (241)
T ss_pred cCCCEEEEeCCcccCCHH
Confidence 899999999999999874
No 197
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.29 E-value=5.5e-12 Score=119.48 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=89.4
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
|..||+.++ ++.|++ .+|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g 72 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDF---------------TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGG 72 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 555788888 999988 56999999 9999999999999999999999999998754 34444443
Q ss_pred CCCCCCCCHHHHHH-ccccCCCCCCcc------------------cHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 83 DSFYHNLTEQELAR-VHEYNFDHPDAF------------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 83 D~~~~~~~~~~~~~-~~~~~~~~~~~~------------------d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
.+.. ......... ...+.++++..+ ..+...+.+..+...... ....++.+..+++..
T Consensus 73 ~~~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 151 (510)
T PRK15439 73 NPCA-RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEI 151 (510)
T ss_pred EECC-CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHH
Confidence 2221 111111100 011112211100 112333444444332211 112455555566666
Q ss_pred CccccCCCcEEEEcccccCCchH
Q 023731 142 PARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++..+.+++++++|+|++.+|+.
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~ 174 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPA 174 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHH
Confidence 66677899999999999999974
No 198
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2.6e-12 Score=111.92 Aligned_cols=140 Identities=13% Similarity=0.181 Sum_probs=83.6
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
||+..+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl---------------~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~ 71 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSF---------------NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQ 71 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE
Confidence 466666 888975 37999999 9999999999999999999999999998764 344444442
Q ss_pred CCCCCCCHHHHHHccccCCCCCC-------------------cccH----HHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 84 SFYHNLTEQELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
+.- ............+.++++. .... +.+.+.++.+...... ....++.+..++
T Consensus 72 ~~~-~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 150 (269)
T PRK13648 72 AIT-DDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQR 150 (269)
T ss_pred ECC-cCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHH
Confidence 221 1111111111111121110 0111 1222333333222111 112444455555
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|++.+|+.
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~ 176 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPD 176 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 55556677899999999999999874
No 199
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=5e-12 Score=110.55 Aligned_cols=141 Identities=13% Similarity=0.165 Sum_probs=81.8
Q ss_pred hccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+.++ ++.|++ ..+++||| .+.+|.+++|.|++|||||||++.|++.+++ .|-..++..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~ 65 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINF---------------KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEE
Confidence 345555 888863 47999999 9999999999999999999999999998754 3434443322
Q ss_pred CCC-CCCHHHHHHccccCCCCCC--cc-----------------cH----HHHHHHHHHhhcCCCccc--cccCCcCCcC
Q 023731 85 FYH-NLTEQELARVHEYNFDHPD--AF-----------------DT----EKLLSSMEKLRHGQAVDI--PNYDFKSYKN 138 (278)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~--~~-----------------d~----~~~~~~l~~~~~~~~i~~--~~~~~~~~~~ 138 (278)
... ............|.++++. .+ .. +...+.++.+........ ..++.+..++
T Consensus 66 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qr 145 (275)
T PRK13639 66 IKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKR 145 (275)
T ss_pred CccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHH
Confidence 210 0000111111122222210 00 00 112223333222111111 2344444455
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|++.+|+.
T Consensus 146 v~laral~~~p~llllDEPt~gLD~~ 171 (275)
T PRK13639 146 VAIAGILAMKPEIIVLDEPTSGLDPM 171 (275)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 55556677899999999999999974
No 200
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.29 E-value=9.6e-12 Score=100.04 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=92.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHcc-ccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
+|.++.|+||||+|||||.++|-+..+ -...++... ...++-+.-| .|+|-. .+ +....+..+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~--l~~SVS~TT----R~pR~gEv~G~dY~Fvs-----~~---EF~~~i~~~~f 68 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSATT----RKPRPGEVDGVDYFFVT-----EE---EFEELIERDEF 68 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC--eEEEEEecc----CCCCCCCcCCceeEeCC-----HH---HHHHHHhcCCc
Confidence 789999999999999999999999762 224444422 1111111111 223322 12 22333444555
Q ss_pred ccccccCCcCCcC-CCCCccccCCCcEEEEcccccCCchHHhhhc-C-eEEEEecChhhhhHHhhhccccccCCCHHHHH
Q 023731 126 VDIPNYDFKSYKN-NVFPARRVNPSDVILLEGILVFHDSRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVL 202 (278)
Q Consensus 126 i~~~~~~~~~~~~-~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~-d-~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~ 202 (278)
+.+..|...-+.- .......+..+..+++|--+.+. ..+++.+ + ..|||.+|....++|++++++.+....+...+
T Consensus 69 LE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa-~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl 147 (191)
T COG0194 69 LEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGA-LQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRL 147 (191)
T ss_pred EEEEEEcCCcccCcHHHHHHHHhcCCeEEEEEehHHH-HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHH
Confidence 5555443322211 11112233445556666555442 3444444 3 78999999999888888887554333333333
Q ss_pred HHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHH
Q 023731 203 DQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~ 246 (278)
.....+.. .....|++|.|+ +.+.+++++...|.
T Consensus 148 ~~a~~Ei~---------~~~~fdyvivNd-d~e~a~~~l~~ii~ 181 (191)
T COG0194 148 ENAKKEIS---------HADEFDYVIVND-DLEKALEELKSIIL 181 (191)
T ss_pred HHHHHHHH---------HHHhCCEEEECc-cHHHHHHHHHHHHH
Confidence 22222111 134589999887 44444444444433
No 201
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.29 E-value=3.2e-12 Score=104.09 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=81.4
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLT 90 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~ 90 (278)
+++|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+.. ...
T Consensus 7 ~~~~~~~~~~~l~~~~~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~ 70 (173)
T cd03246 7 SFRYPGAEPPVLRNVSF---------------SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS-QWD 70 (173)
T ss_pred EEEcCCCCCcceeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc-cCC
Confidence 778864 47999999 9999999999999999999999999998764 344555443321 122
Q ss_pred HHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.........+.++++..+.. ...+.+ ++.+..++....+..+.+++++++|+|++.+|+..
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~-tv~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 71 PNELGDHVGYLPQDDELFSG-SIAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred HHHHHhheEEECCCCccccC-cHHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 22222223444554433321 122211 45555566666667788999999999999998753
No 202
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=1e-11 Score=104.61 Aligned_cols=139 Identities=13% Similarity=0.058 Sum_probs=83.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+..+ ++.|++ ..++++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++....
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDF---------------HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecCCceeeecceE---------------EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc
Confidence 567777 888977 57999999 9999999999999999999999999998754 23333332211
Q ss_pred ------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccc
Q 023731 86 ------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 86 ------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~ 145 (278)
+..++..++..+... +. .....+...+.+..+...... ....++.+..++....+..
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~-~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCG-LH--GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLW 152 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHH-hc--CCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHH
Confidence 111122221111000 00 000111222333333222111 1124444555555555667
Q ss_pred cCCCcEEEEcccccCCchHH
Q 023731 146 VNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~ 165 (278)
+.+++++++|+|...+|+..
T Consensus 153 ~~~p~llllDEPt~~LD~~~ 172 (214)
T PRK13543 153 LSPAPLWLLDEPYANLDLEG 172 (214)
T ss_pred hcCCCEEEEeCCcccCCHHH
Confidence 78999999999999998753
No 203
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=6.5e-12 Score=109.48 Aligned_cols=137 Identities=13% Similarity=0.035 Sum_probs=81.3
Q ss_pred CceeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC-----
Q 023731 13 SSGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF----- 85 (278)
Q Consensus 13 ~~~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~----- 85 (278)
...+.|++. .|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 29 ~~~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~ 93 (269)
T cd03294 29 EILKKTGQTVGVNDVSL---------------DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR 93 (269)
T ss_pred hhhhhcCCceEeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccCh
Confidence 347888885 5999999 9999999999999999999999999998864 34344433221
Q ss_pred --------------------CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 86 --------------------YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 86 --------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
+...+..++..+.............+...+.++.+...... ....++.+..++...++
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAr 173 (269)
T cd03294 94 KELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLAR 173 (269)
T ss_pred hhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 11112221111110000000000011223333333222111 11245555555655666
Q ss_pred cccCCCcEEEEcccccCCchH
Q 023731 144 RRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+.+++++++|+|++.+|+.
T Consensus 174 al~~~p~illLDEPt~~LD~~ 194 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPL 194 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHH
Confidence 677899999999999999875
No 204
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.29 E-value=6.1e-12 Score=104.90 Aligned_cols=133 Identities=15% Similarity=0.139 Sum_probs=80.6
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||.+.|++.+++ .|...++..+.... . .
T Consensus 7 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~-~ 69 (201)
T cd03231 7 TCERDGRALFSGLSF---------------TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-R-D 69 (201)
T ss_pred EEEeCCceeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-c-H
Confidence 788877 56999999 9999999999999999999999999998754 34344443222110 0 0
Q ss_pred HHHHccccCCCCCC----------------cccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEE
Q 023731 93 ELARVHEYNFDHPD----------------AFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILL 154 (278)
Q Consensus 93 ~~~~~~~~~~~~~~----------------~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiii 154 (278)
.......+.++.+. ....+.+.+.++.+...... ....++.+..++...++..+.+++++++
T Consensus 70 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 149 (201)
T cd03231 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWIL 149 (201)
T ss_pred HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00000011111100 01223344444444332211 1124444555555555667789999999
Q ss_pred cccccCCchH
Q 023731 155 EGILVFHDSR 164 (278)
Q Consensus 155 dg~~~~~d~~ 164 (278)
|+|...+|+.
T Consensus 150 DEPt~~LD~~ 159 (201)
T cd03231 150 DEPTTALDKA 159 (201)
T ss_pred eCCCCCCCHH
Confidence 9999999874
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.1e-11 Score=106.64 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=44.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
||+..+ ++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINM---------------QIEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456666 899987 57999999 99999999999999999999999999986
No 206
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=4.6e-12 Score=111.41 Aligned_cols=142 Identities=13% Similarity=0.149 Sum_probs=83.6
Q ss_pred hccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 9 MIEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
+|+.++ .+.|++ .+|+|||| .+.+|.+++|.|++|||||||.+.|++.+.+ .|...+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~ 66 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISF---------------ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITI 66 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 355556 888973 37999999 9999999999999999999999999998764 344444
Q ss_pred cCCCCCCCC---CHHHHHHccccCCCCCC--c-----------------ccH----HHHHHHHHHhhcC-CCc--ccccc
Q 023731 81 NQDSFYHNL---TEQELARVHEYNFDHPD--A-----------------FDT----EKLLSSMEKLRHG-QAV--DIPNY 131 (278)
Q Consensus 81 ~~D~~~~~~---~~~~~~~~~~~~~~~~~--~-----------------~d~----~~~~~~l~~~~~~-~~i--~~~~~ 131 (278)
+..+..... ..........+.++.+. . ... ....+.+..+... ... ....+
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 146 (287)
T PRK13641 67 AGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146 (287)
T ss_pred CCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccC
Confidence 443221100 00111111112222110 0 010 1122333333221 111 11244
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+.+..++....+..+.+++++++|+|++.+|+..
T Consensus 147 SgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 5555555555566778999999999999999743
No 207
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=7.9e-12 Score=106.78 Aligned_cols=135 Identities=13% Similarity=0.121 Sum_probs=80.6
Q ss_pred eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC-----------
Q 023731 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ----------- 82 (278)
Q Consensus 15 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~----------- 82 (278)
++.|++..|++++| .+.++.+++|.|++|||||||++.|++.+.+ .|..+++.
T Consensus 7 ~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 7 SKDWKEFKLKNVSL---------------EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71 (235)
T ss_pred EEEeCCceeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHc
Confidence 78888778999999 9999999999999999999999999998764 23333333
Q ss_pred -------CC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcEE
Q 023731 83 -------DS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDVI 152 (278)
Q Consensus 83 -------D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~ii 152 (278)
+. ++...+..++..+.............+.+.+.++.+........ ..++.+..+++...+..+..++++
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 151 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKIL 151 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 22 22222332222211100000000001122333443332222211 234445555555556677899999
Q ss_pred EEcccccCCchH
Q 023731 153 LLEGILVFHDSR 164 (278)
Q Consensus 153 iidg~~~~~d~~ 164 (278)
++|+|+..+|+.
T Consensus 152 llDEPt~gLD~~ 163 (235)
T cd03299 152 LLDEPFSALDVR 163 (235)
T ss_pred EECCCcccCCHH
Confidence 999999999874
No 208
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.28 E-value=5.8e-12 Score=104.94 Aligned_cols=139 Identities=12% Similarity=0.123 Sum_probs=83.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||...+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~ 65 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISF---------------HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc
Confidence 344555 888887 57999999 9999999999999999999999999998754 34455544332
Q ss_pred CCCCCHHHHHHccccCCCCCCc-----------------ccHHHHHHHHHHhhcCCCcccc--ccCCcCCcCCCCCcccc
Q 023731 86 YHNLTEQELARVHEYNFDHPDA-----------------FDTEKLLSSMEKLRHGQAVDIP--NYDFKSYKNNVFPARRV 146 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~~l~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~ 146 (278)
... .........+.++.+.. .+...+.+.+..+........+ .++.+..++....+..+
T Consensus 66 ~~~--~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 66 KKD--LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred ccC--HHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHh
Confidence 210 01111111111111000 0111233344433322212222 34444445555556677
Q ss_pred CCCcEEEEcccccCCchH
Q 023731 147 NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~ 164 (278)
.+++++++|+|+..+|+.
T Consensus 144 ~~p~~lilDEP~~~LD~~ 161 (200)
T PRK13540 144 SKAKLWLLDEPLVALDEL 161 (200)
T ss_pred cCCCEEEEeCCCcccCHH
Confidence 899999999999998864
No 209
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.1e-11 Score=106.95 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=43.2
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
|+.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+
T Consensus 7 l~~~~l~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 7 MEARGLSFFYGDFQALHDISL---------------EFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EEEeeeEEEECCeeeecceeE---------------EEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55566 888987 57999999 99999999999999999999999999975
No 210
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.3e-11 Score=99.73 Aligned_cols=143 Identities=15% Similarity=0.066 Sum_probs=91.7
Q ss_pred hccCCc-eeeeCC-c--cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CE------
Q 023731 9 MIEASS-GVHFSG-F--HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RV------ 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~--~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~------ 77 (278)
|+..++ ..+|.| . +|.|+|+ .+..+..+++.||||||||||.+.+++...|. |.
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL---------------~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r 67 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSL---------------TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67 (259)
T ss_pred eeehhheEEecCCcchhhhhccce---------------eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE
Confidence 455555 888998 3 6999999 99999999999999999999999999987651 11
Q ss_pred ---------EEEcC-CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccc
Q 023731 78 ---------VLVNQ-DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 78 ---------~~i~~-D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~ 145 (278)
.++-+ +.....++...+..++...-+-+...-.+...+.+.....++.- .+-..+.+..++...++..
T Consensus 68 ~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARAL 147 (259)
T COG4525 68 RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARAL 147 (259)
T ss_pred eccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHh
Confidence 22222 33334344444444443322222222223333444444333321 2235566666776666777
Q ss_pred cCCCcEEEEcccccCCchHHh
Q 023731 146 VNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~ 166 (278)
..++..+++|+|+..+|.-.+
T Consensus 148 a~eP~~LlLDEPfgAlDa~tR 168 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTR 168 (259)
T ss_pred hcCcceEeecCchhhHHHHHH
Confidence 789999999999998886443
No 211
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=2e-12 Score=105.73 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCC--
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLT-- 90 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~-- 90 (278)
.+.|++ ..++++|| ++.++.+++|.|++|||||||++.|++.+++ .|-..++..+.. ...
T Consensus 7 ~~~~~~~~~l~~i~~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~ 70 (178)
T cd03229 7 SKRYGQKTVLNDVSL---------------NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT-DLEDE 70 (178)
T ss_pred EEEECCeEEEeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-ccchh
Confidence 677876 46999999 9999999999999999999999999998764 455555553322 111
Q ss_pred HHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.........+.++.+..+......+.+.. .++.+..++....+..+.+++++++|+|++.+|+.
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~ 134 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIAL----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPI 134 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheee----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence 11222223344444432221111221110 05555556655566777899999999999999875
No 212
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=9.5e-12 Score=107.50 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=46.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNL---------------EVREQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeee---------------EEcCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 577777 899987 57999999 9999999999999999999999999998754
No 213
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.28 E-value=4.7e-12 Score=102.10 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=74.4
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..+++++| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+... ....
T Consensus 7 ~~~~~~~~vl~~i~~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~ 70 (163)
T cd03216 7 TKRFGGVKALDGVSL---------------SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSF-ASPR 70 (163)
T ss_pred EEEECCeEEEeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCc-CCHH
Confidence 788887 57999999 9999999999999999999999999998764 3444444322110 1000
Q ss_pred H-HHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 93 E-LARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 93 ~-~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
. ...... ..+.++.+..++....+..+.+++++++|+|+..+|+..
T Consensus 71 ~~~~~~i~---------------------------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 71 DARRAGIA---------------------------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred HHHhcCeE---------------------------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 0 000000 112255555566555566778999999999999998753
No 214
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=2.6e-12 Score=112.21 Aligned_cols=140 Identities=12% Similarity=0.187 Sum_probs=83.3
Q ss_pred hccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 9 MIEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
||+..+ ++.|++ ..|++||| ++.+|.+++|.|++|||||||.+.|++.+.+ .|-..++..+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINL---------------VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGID 65 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 455556 888953 47999999 9999999999999999999999999998764 3444444432
Q ss_pred CCCCCC-HHHHHHccccCCCCCC-------------------cccH----HHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 85 FYHNLT-EQELARVHEYNFDHPD-------------------AFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~-------------------~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
... .. .........+.++.+. ..+. +...+.++.+...... ....++.+..++
T Consensus 66 ~~~-~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 144 (274)
T PRK13644 66 TGD-FSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQC 144 (274)
T ss_pred CCc-cccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHH
Confidence 211 10 0111111111111111 0111 1122223333222111 112455555556
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|++.+|+.
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~ 170 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPD 170 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 55566677899999999999999974
No 215
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.27 E-value=1.2e-11 Score=104.80 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=47.6
Q ss_pred hccCCc-eeeeCC--------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEE
Q 023731 9 MIEASS-GVHFSG--------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVV 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~--------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~ 78 (278)
||+-.+ .+.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|..
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 65 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSL---------------TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 355555 888852 47999999 9999999999999999999999999998864 3555
Q ss_pred EEc
Q 023731 79 LVN 81 (278)
Q Consensus 79 ~i~ 81 (278)
.++
T Consensus 66 ~~~ 68 (224)
T TIGR02324 66 LVR 68 (224)
T ss_pred EEe
Confidence 554
No 216
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.27 E-value=5.6e-12 Score=105.63 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=83.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+.++ +++|++ .+|+++|| .++++.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSF---------------TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC
Confidence 567777 899987 57999999 9999999999999999999999999998753 34444443221
Q ss_pred C------------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccc
Q 023731 86 Y------------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARR 145 (278)
Q Consensus 86 ~------------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~ 145 (278)
. ...+..++..+... +. . .......+.++.+........ ..++.+..++....+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~-~~--~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAA-FL--G-GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLL 142 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHH-hc--C-CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHH
Confidence 1 11111111110000 00 0 011223333433322211111 24444555555555666
Q ss_pred cCCCcEEEEcccccCCchH
Q 023731 146 VNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~ 164 (278)
+.+++++++|+|++.+|+.
T Consensus 143 ~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAA 161 (207)
T ss_pred hcCCCEEEEeCCcccCCHH
Confidence 7889999999999999864
No 217
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.27 E-value=6.2e-12 Score=104.57 Aligned_cols=131 Identities=12% Similarity=0.082 Sum_probs=77.9
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY------ 86 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~------ 86 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+..
T Consensus 7 ~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 7 ACSRGERMLFEGLSF---------------TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71 (198)
T ss_pred EEEECCEEEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHh
Confidence 788887 56999999 9999999999999999999999999998754 233333332211
Q ss_pred --------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCc
Q 023731 87 --------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 87 --------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
...+..++..+...... .+.....+.++.+........ ..++.+..++....+..+.+++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 72 HRNILYLGHLPGLKPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred hhheEEeccCcccccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 11111111111000000 011123333333322211111 2344444455555566678999
Q ss_pred EEEEcccccCCchH
Q 023731 151 VILLEGILVFHDSR 164 (278)
Q Consensus 151 iiiidg~~~~~d~~ 164 (278)
++++|+|.+.+|+.
T Consensus 148 llllDEPt~~LD~~ 161 (198)
T TIGR01189 148 LWILDEPTTALDKA 161 (198)
T ss_pred EEEEeCCCcCCCHH
Confidence 99999999998864
No 218
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.27 E-value=1.5e-11 Score=104.19 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=81.0
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE------------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV------------ 80 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i------------ 80 (278)
++.|++ ..|++++| .+.++.+++|.|++|||||||++.|++.+++ .|...+
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 7 SKRFGKQTAVNNISL---------------TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred EEEECCEEEEeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccc
Confidence 678877 56999999 9999999999999999999999999998754 232222
Q ss_pred ----cCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcEEE
Q 023731 81 ----NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 81 ----~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
.++. ++...+..++..+....+. .+.....+.++.+........ ..++.+..++....+..+.++++++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~lll 147 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2221 1222233222221111111 122233344444333221111 2445555555555566778999999
Q ss_pred EcccccCCchHH
Q 023731 154 LEGILVFHDSRV 165 (278)
Q Consensus 154 idg~~~~~d~~~ 165 (278)
+|+|+..+|+..
T Consensus 148 lDEP~~~LD~~~ 159 (223)
T TIGR03740 148 LDEPTNGLDPIG 159 (223)
T ss_pred ECCCccCCCHHH
Confidence 999999998753
No 219
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=9.3e-12 Score=107.82 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=83.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
||+..+ +++|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~ 76 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSM---------------QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSI 76 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEE
Confidence 577677 888977 57999999 9999999999999999999999999998752 454444
Q ss_pred cCCCCCCC-CCHHHHHHccccCCCCCCccc-----------------HH----HHHHHHHHhhcCC------CccccccC
Q 023731 81 NQDSFYHN-LTEQELARVHEYNFDHPDAFD-----------------TE----KLLSSMEKLRHGQ------AVDIPNYD 132 (278)
Q Consensus 81 ~~D~~~~~-~~~~~~~~~~~~~~~~~~~~d-----------------~~----~~~~~l~~~~~~~------~i~~~~~~ 132 (278)
+..+.... ...........|.++.+..+. .. ...+.++.+.... ......++
T Consensus 77 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 156 (258)
T PRK14268 77 EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLS 156 (258)
T ss_pred CCEEcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCC
Confidence 44322110 000111111222222222111 00 1122222221100 00112344
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+..+++..++..+.+++++++|+|+..+|+..
T Consensus 157 gG~~qrv~laral~~~p~llllDEPt~~LD~~~ 189 (258)
T PRK14268 157 GGQQQRLCIARTLAVKPKIILFDEPTSALDPIS 189 (258)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHH
Confidence 444455555566678899999999999998753
No 220
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=1e-11 Score=105.69 Aligned_cols=125 Identities=15% Similarity=0.197 Sum_probs=88.1
Q ss_pred hccCCc-eeeeCC----------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC
Q 023731 9 MIEASS-GVHFSG----------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~----------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~ 76 (278)
|++..+ +++|.. .+++|||| .+.++.+++|+|.|||||||+++.|.+.+.+ .|
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf---------------~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSF---------------SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeE---------------EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 556666 777743 46999999 9999999999999999999999999999874 45
Q ss_pred EEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--ccc-ccCCcCCcCCCCCccccCCCcEEE
Q 023731 77 VVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~-~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
..++.+.+... +. ..-..+...+.|......... .+| .++.+..+|...++.....+++++
T Consensus 69 ~i~f~g~~i~~-~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV 132 (268)
T COG4608 69 EILFEGKDITK-LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIV 132 (268)
T ss_pred eEEEcCcchhh-cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEE
Confidence 56666655331 11 001112344455544433221 334 667777777777777888999999
Q ss_pred EcccccCCchH
Q 023731 154 LEGILVFHDSR 164 (278)
Q Consensus 154 idg~~~~~d~~ 164 (278)
.|++.+.+|..
T Consensus 133 ~DEpvSaLDvS 143 (268)
T COG4608 133 ADEPVSALDVS 143 (268)
T ss_pred ecCchhhcchh
Confidence 99999988864
No 221
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=107.11 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=46.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
||+..+ ++.|++ ..|++||| .+.+|.+++|.|++|||||||++.|++.+.+
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINI---------------KILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred eEEEeeeEEEeCCceeecceee---------------EEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 677777 889987 46999999 9999999999999999999999999998864
No 222
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.27 E-value=2.1e-11 Score=100.16 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=65.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCH--HHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE--QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 125 (278)
..+|+|.|++||||||+++.|++.+ ++.+++.+++++.... ..........+........+.+.+.+....
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 75 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY---GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAM---- 75 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Confidence 4689999999999999999999987 5777777654422100 000000000011111111111111111100
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHH---hhhcCeEEEEecChhhhhHHhhhccc
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRV---RELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~---~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
.........+|+||...... ..+ ...+|..||++++.+.+.+|+.+|..
T Consensus 76 -----------------~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 76 -----------------VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred -----------------HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 01123345678888532211 011 12468999999999999999998863
No 223
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.27 E-value=3e-12 Score=126.13 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=66.2
Q ss_pred cEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccccccccc-EEe
Q 023731 150 DVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD-III 228 (278)
Q Consensus 150 ~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD-~iI 228 (278)
.-+|+||.-.+ .-+.+..+++|||++++++|.+|+.+... ...+.+++......+......+-+.|.+...| ++|
T Consensus 190 ~~~V~eGRDig--TvVfPdA~~KifL~As~e~RA~RR~~e~~--~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~i 265 (863)
T PRK12269 190 ARVVCEGRDLT--TVVFVDADLKCYLDASIEARVARRWAQGT--SRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYV 265 (863)
T ss_pred CCEEEECCCCc--cEECCCCCEEEEEECCHHHHHHHHHHhhh--ccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEE
Confidence 45899997554 24556678999999999999999976643 23567787777777666667778888888888 677
Q ss_pred eCCCCcHHHHHHHHHHHHHhh
Q 023731 229 PRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 229 ~n~~~~~~~~~~l~~~I~~~l 249 (278)
+++..+ ++++++.|.+.+
T Consensus 266 Dts~l~---ieevv~~i~~~~ 283 (863)
T PRK12269 266 DTSCLT---IEEVCERIAREA 283 (863)
T ss_pred ECCCCC---HHHHHHHHHHHH
Confidence 777644 444444444444
No 224
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.6e-11 Score=116.44 Aligned_cols=142 Identities=11% Similarity=0.107 Sum_probs=88.0
Q ss_pred hhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC
Q 023731 8 DMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS 84 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~ 84 (278)
-||+.++ ++.|++ ..|+|||| .+.+|.+++|+|+||||||||++.|++.+.+ .|...++..+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~---------------~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~ 68 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNL---------------TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNIN 68 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEE
Confidence 4677777 999987 46999999 9999999999999999999999999998754 3434443322
Q ss_pred C----------------------CCCCCHHHHHHccccCCC---CCCcccH----HHHHHHHHHhhcCCCccc--cccCC
Q 023731 85 F----------------------YHNLTEQELARVHEYNFD---HPDAFDT----EKLLSSMEKLRHGQAVDI--PNYDF 133 (278)
Q Consensus 85 ~----------------------~~~~~~~~~~~~~~~~~~---~~~~~d~----~~~~~~l~~~~~~~~i~~--~~~~~ 133 (278)
+ +..++..++..++...+. .....+. +...+.+..+........ ..++.
T Consensus 69 i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 148 (510)
T PRK09700 69 YNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSI 148 (510)
T ss_pred CCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCH
Confidence 1 111222222211110000 0000111 223344444433322221 25555
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+++..++..+.+++++++|+|++.+|+.
T Consensus 149 G~~qrv~ia~al~~~p~lllLDEPt~~LD~~ 179 (510)
T PRK09700 149 SHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 5666666666778899999999999999974
No 225
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.27 E-value=4.7e-11 Score=96.90 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=84.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI 128 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~ 128 (278)
..|.|+|++||||||+++.|++.+ +..+++.|.+...........+ +. .+.++.+.+.-..+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l---g~~~~d~D~~~~~~~g~~~~~~----~~---~~g~~~~~~~e~~~~~------ 66 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL---GYRFVDTDQWLQSTSNMTVAEI----VE---REGWAGFRARESAALE------ 66 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh---CCCEEEccHHHHHHhCCCHHHH----HH---HHCHHHHHHHHHHHHH------
Confidence 468899999999999999999998 5788898876532211110000 00 0111222111111100
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH---HhhhcCeEEEEecChhhhhHHhhhccccc-----cCCCHHH
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR---VRELMNMKIFVDTDADVRLARRIRRDTVE-----KGRDIAT 200 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~---~~~~~d~~I~l~~~~e~~~~R~~~R~~~~-----~~~~~~~ 200 (278)
.+.....++..|........ +....+++|||+++.+.+++|+..|.... .+....+
T Consensus 67 ----------------~~~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~ 130 (171)
T PRK03731 67 ----------------AVTAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISE 130 (171)
T ss_pred ----------------HhcCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHH
Confidence 11123344544433332332 22346799999999999999998764211 1222222
Q ss_pred HHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
..........+.| ...++++|+++. .++.+.+.|...+.
T Consensus 131 ~~~~~~~~r~~~y-------~~~a~~~Id~~~----~~e~v~~~i~~~l~ 169 (171)
T PRK03731 131 EVAEVLAEREALY-------REVAHHIIDATQ----PPSQVVSEILSALA 169 (171)
T ss_pred HHHHHHHHHHHHH-------HHhCCEEEcCCC----CHHHHHHHHHHHHh
Confidence 2222222233333 345778997663 35666666665553
No 226
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.5e-11 Score=106.55 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=49.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
+|+.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~ 68 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNL---------------NIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEE
Confidence 567777 899987 56999999 9999999999999999999999999998752 455555
Q ss_pred cC
Q 023731 81 NQ 82 (278)
Q Consensus 81 ~~ 82 (278)
+.
T Consensus 69 ~g 70 (258)
T PRK14241 69 DG 70 (258)
T ss_pred CC
Confidence 44
No 227
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.3e-11 Score=107.00 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=44.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+|+.++ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINL---------------DIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 356666 888987 46999999 999999999999999999999999999874
No 228
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.4e-11 Score=111.24 Aligned_cols=158 Identities=12% Similarity=0.142 Sum_probs=94.7
Q ss_pred hccCCceeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCC
Q 023731 9 MIEASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYH 87 (278)
Q Consensus 9 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~ 87 (278)
||+-..+++|+++.+ ++|| .+.++.+++|.|+||||||||++.|++.+.+ .|...++..++..
T Consensus 1 ~l~~~l~k~~~~~~~-~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~ 64 (352)
T PRK11144 1 MLELNFKQQLGDLCL-TVNL---------------TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFD 64 (352)
T ss_pred CeEEEEEEEeCCEEE-EEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 466655899998666 8999 9999999999999999999999999998764 3444444433211
Q ss_pred C---CCHHHHHHccccCCCCCCcc----------------cHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCcccc
Q 023731 88 N---LTEQELARVHEYNFDHPDAF----------------DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 88 ~---~~~~~~~~~~~~~~~~~~~~----------------d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~ 146 (278)
. ...........+.|+++..| ..+...+.++.+...... ....++.+..++....+..+
T Consensus 65 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 65 AEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred cccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 0 00001111112223322111 112233344443332211 11245555556666666777
Q ss_pred CCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023731 147 NPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
.+++++++|+|++.+|+..+.. .+ .+|++..+.+..
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 8999999999999999743321 12 466777766543
No 229
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=106.39 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=45.7
Q ss_pred hhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 8 DMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
.||+..+ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISL---------------DFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 4667777 889987 56999999 999999999999999999999999999874
No 230
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.5e-11 Score=106.07 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=45.4
Q ss_pred hhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 8 DMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
-||+..+ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINL---------------PIYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3566667 889987 56999999 999999999999999999999999999864
No 231
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.9e-11 Score=106.55 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=45.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
||+..+ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.
T Consensus 13 ~l~i~nl~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNVFC---------------DIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred eEEEEeEEEEECCEEEEcceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 566667 899987 57999999 999999999999999999999999999864
No 232
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=9.4e-12 Score=109.08 Aligned_cols=141 Identities=10% Similarity=0.087 Sum_probs=80.9
Q ss_pred ccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 10 IEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
|+..+ ++.|++ ..|++||| .+.++.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~ 67 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNL---------------TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD 67 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 44455 788864 37999999 9999999999999999999999999998754 2334443
Q ss_pred CCCCCCC---CCHHHHHHccccCCCCCC-------------------cccHH----HHHHHHHHhhcCC-Cc--cccccC
Q 023731 82 QDSFYHN---LTEQELARVHEYNFDHPD-------------------AFDTE----KLLSSMEKLRHGQ-AV--DIPNYD 132 (278)
Q Consensus 82 ~D~~~~~---~~~~~~~~~~~~~~~~~~-------------------~~d~~----~~~~~l~~~~~~~-~i--~~~~~~ 132 (278)
..+.... ...........|.++.+. .++.+ ...+.++.+.... .. ....++
T Consensus 68 g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 147 (280)
T PRK13649 68 DTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELS 147 (280)
T ss_pred CEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 3221100 000011111111111110 01111 1222233322221 11 112445
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+..++...++..+.+++++++|+|++.+|+..
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 555555555566778999999999999999753
No 233
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1e-11 Score=102.82 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=83.1
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC---CCCEEE
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---DQRVVL 79 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~---~~~~~~ 79 (278)
+|+.++ .+.|++ ..++++|| .+.++.+++|+|++|||||||++.|++.+. ..|...
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~ 67 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISG---------------YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEIL 67 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEE
Confidence 345555 778863 46999999 999999999999999999999999998642 245455
Q ss_pred EcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEccccc
Q 023731 80 VNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (278)
Q Consensus 80 i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~ 159 (278)
++..+.. ........+.++.+..+......+.+..... . ..++.+..++....+..+.+++++++|+|++
T Consensus 68 ~~g~~~~-----~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~---~--~~LSgGe~qrv~la~al~~~p~vlllDEP~~ 137 (192)
T cd03232 68 INGRPLD-----KNFQRSTGYVEQQDVHSPNLTVREALRFSAL---L--RGLSVEQRKRLTIGVELAAKPSILFLDEPTS 137 (192)
T ss_pred ECCEehH-----HHhhhceEEecccCccccCCcHHHHHHHHHH---H--hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCc
Confidence 5443321 1111222333444333322122233221100 0 1455555666656667778999999999999
Q ss_pred CCchH
Q 023731 160 FHDSR 164 (278)
Q Consensus 160 ~~d~~ 164 (278)
.+|+.
T Consensus 138 ~LD~~ 142 (192)
T cd03232 138 GLDSQ 142 (192)
T ss_pred CCCHH
Confidence 99875
No 234
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.9e-11 Score=105.52 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=47.0
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
|..||+.++ ++.|++ ..|+|+|| .+.+|.+++|.|++|||||||++.|++.+.
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDITI---------------SIPKNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeeeEE---------------EECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 445777777 899987 57999999 999999999999999999999999998753
No 235
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.26 E-value=1.4e-11 Score=106.54 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=81.6
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC----------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ---------- 82 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~---------- 82 (278)
+++|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+++ .|...++.
T Consensus 8 ~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 8 SWSAGGRLIVDGVDV---------------TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred EEEECCEEEEeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHH
Confidence 788887 57999999 9999999999999999999999999998753 23333332
Q ss_pred ----------CC-CCCCCCHHHHHHccccC----CCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccc
Q 023731 83 ----------DS-FYHNLTEQELARVHEYN----FDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARR 145 (278)
Q Consensus 83 ----------D~-~~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~ 145 (278)
+. ++...+..++..+.... +..+...+.+.+.+.+..+....... ...++.+..++....+..
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (256)
T TIGR03873 73 RARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARAL 152 (256)
T ss_pred HhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 21 12222322222211100 00000001122334444433222111 124455555555555667
Q ss_pred cCCCcEEEEcccccCCchHHh
Q 023731 146 VNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~ 166 (278)
+.+++++++|+|++.+|+...
T Consensus 153 ~~~p~llllDEPt~~LD~~~~ 173 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQ 173 (256)
T ss_pred hcCCCEEEEcCccccCCHHHH
Confidence 788999999999999987533
No 236
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.26 E-value=9.9e-12 Score=111.26 Aligned_cols=140 Identities=16% Similarity=0.227 Sum_probs=84.8
Q ss_pred hccCCc-eeeeCC--------------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG--------------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~--------------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
||+..+ ++.|+. .+++|||| .+.++.+++|.|+||||||||++.|++.+.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTL---------------RLYEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 567777 888851 36999999 999999999999999999999999999886
Q ss_pred C-CCEEEEcCCCCCCCCCHHH---HHHccccCCCCCC-c---------------------ccHH----HHHHHHHHhhcC
Q 023731 74 D-QRVVLVNQDSFYHNLTEQE---LARVHEYNFDHPD-A---------------------FDTE----KLLSSMEKLRHG 123 (278)
Q Consensus 74 ~-~~~~~i~~D~~~~~~~~~~---~~~~~~~~~~~~~-~---------------------~d~~----~~~~~l~~~~~~ 123 (278)
+ .|...++..+.. .+.... ......+.|+++. . +..+ ...+.++.+...
T Consensus 73 p~~G~I~~~G~~i~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~ 151 (331)
T PRK15079 73 ATDGEVAWLGKDLL-GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL 151 (331)
T ss_pred CCCcEEEECCEECC-cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 4 344444443322 111111 1111222333321 0 1111 112223322221
Q ss_pred CCc--ccc-ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 124 QAV--DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 124 ~~i--~~~-~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
... .+| .++.+..+++..++..+.+++++|+|+|++.+|..
T Consensus 152 ~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~ 195 (331)
T PRK15079 152 PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195 (331)
T ss_pred hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 111 112 45555556665666677899999999999999964
No 237
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.1e-11 Score=106.16 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=84.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
+|+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+++ .|...+
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~ 83 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDL---------------DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEE
Confidence 566677 899987 46999999 9999999999999999999999999998753 454555
Q ss_pred cCCCCCC-CCCHHHHHHccccCCCCCCccc-----------------------HHHHHHHHHHhhcCC----Cc--cccc
Q 023731 81 NQDSFYH-NLTEQELARVHEYNFDHPDAFD-----------------------TEKLLSSMEKLRHGQ----AV--DIPN 130 (278)
Q Consensus 81 ~~D~~~~-~~~~~~~~~~~~~~~~~~~~~d-----------------------~~~~~~~l~~~~~~~----~i--~~~~ 130 (278)
+..+... ............+.++++..+. .+...+.++.+.... .. ....
T Consensus 84 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 163 (267)
T PRK14235 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG 163 (267)
T ss_pred CCEECcccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc
Confidence 4422210 0011111111122222221111 011122222222111 00 1123
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
++.+..++....+..+.+++++++|+|+..+|+..
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 198 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIA 198 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH
Confidence 44445555555566778999999999999998753
No 238
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.26 E-value=1.3e-11 Score=107.41 Aligned_cols=140 Identities=11% Similarity=0.181 Sum_probs=81.9
Q ss_pred hccCCc-eeeeC----------CccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC
Q 023731 9 MIEASS-GVHFS----------GFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR 76 (278)
Q Consensus 9 ~~~~~~-~~~~~----------~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~ 76 (278)
||+..+ ++.|+ ..+|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 66 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSL---------------SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCcee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 455556 78885 257999999 9999999999999999999999999998764 23
Q ss_pred EEEEcCCCCCCCCCHHH---HHHccccCCCCCC---------------------ccc----HHHHHHHHHHhhcCCC-c-
Q 023731 77 VVLVNQDSFYHNLTEQE---LARVHEYNFDHPD---------------------AFD----TEKLLSSMEKLRHGQA-V- 126 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~~---~~~~~~~~~~~~~---------------------~~d----~~~~~~~l~~~~~~~~-i- 126 (278)
...++..+... ..... ......+.++.+. .++ .+...+.++.+..... .
T Consensus 67 ~i~~~g~~i~~-~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 67 TVSFRGQDLYQ-LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred EEEECCEEccc-cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 34443322110 11100 0001111111110 011 1122333443322111 1
Q ss_pred -cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 127 -DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 146 ~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~ 184 (265)
T TIGR02769 146 KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184 (265)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11244445555555556677899999999999999875
No 239
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.26 E-value=1.6e-11 Score=107.11 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=45.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSL---------------RIEPGRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred CeEEEEEEEEECCEeEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456666 888987 46999999 9999999999999999999999999998865
No 240
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=2.1e-11 Score=105.66 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=45.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
||+.++ .+.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.
T Consensus 12 ~l~i~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 12 VYQINGMNLWYGQHHALKNINL---------------SIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eEEEeeEEEEECCeeeEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 577777 889987 57999999 999999999999999999999999999875
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.26 E-value=5.7e-12 Score=96.20 Aligned_cols=109 Identities=19% Similarity=0.279 Sum_probs=64.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCc----ccHHHHHHHHHHhhcCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDA----FDTEKLLSSMEKLRHGQA 125 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~l~~~~~~~~ 125 (278)
+|+|+|++||||||+|+.|++.+ ++.+++.|+++...... .+..+.. .+.+.+.+.+..+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i~~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~---- 65 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVISMDDLIREPGWI--------ERDDDEREYIDADIDLLDDILEQLQ---- 65 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEEEEHHHHCCGTHC--------HGCTTCCHHHHHHHHHHHHHHHHHH----
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEEEecceEEecccc--------ccCcchhhHHHHHHHHHHHHHHhhh----
Confidence 68999999999999999999998 58889998842211111 0111110 11112222222211
Q ss_pred ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH-HhhhcCeEEEEecChhhhhHHhhhccccc
Q 023731 126 VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR-VRELMNMKIFVDTDADVRLARRIRRDTVE 193 (278)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~-~~~~~d~~I~l~~~~e~~~~R~~~R~~~~ 193 (278)
.......+++||.+. .... .....+..||++++.+.+..|+++|....
T Consensus 66 -------------------~~~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~ 114 (121)
T PF13207_consen 66 -------------------NKPDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRR 114 (121)
T ss_dssp -------------------ETTT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred -------------------ccCCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHH
Confidence 133556789999654 2222 22345789999999987777777765433
No 242
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=4.7e-12 Score=111.09 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=84.7
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----CEEEE
Q 023731 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----RVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~----~~~~i 80 (278)
||+.++ ++.|++ ..+++||| .+.++.+++|.|++|||||||++.|++.+.+. |...+
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l---------------~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i 69 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISF---------------SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV 69 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEE
Confidence 466666 888864 37999999 99999999999999999999999999998653 45555
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCC-------------------cccHH----HHHHHHHHhhcCCCcc--ccccCCcC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPD-------------------AFDTE----KLLSSMEKLRHGQAVD--IPNYDFKS 135 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~-------------------~~d~~----~~~~~l~~~~~~~~i~--~~~~~~~~ 135 (278)
+..++-. ...........+.++++. .+..+ ...+.++.+....... ...++.+.
T Consensus 70 ~g~~~~~-~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~ 148 (282)
T PRK13640 70 DGITLTA-KTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQ 148 (282)
T ss_pred CCEECCc-CCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHH
Confidence 5533221 111111111122222211 01111 1222333332221111 12444445
Q ss_pred CcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 136 ~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++....+..+.+++++++|+|+..+|+.
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~ 177 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPA 177 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 55555556677899999999999999974
No 243
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.25 E-value=3.7e-12 Score=104.20 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=81.2
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLT 90 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~ 90 (278)
+++|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+... .
T Consensus 7 ~~~~~~~~~~~l~~i~~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~- 69 (178)
T cd03247 7 SFSYPEQEQQVLKNLSL---------------ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD-L- 69 (178)
T ss_pred EEEeCCCCccceEEEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHH-H-
Confidence 677865 47999999 9999999999999999999999999998764 4445554432110 1
Q ss_pred HHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 91 EQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.........+.++++..+.. ...+.+ ...++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~-tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~ 132 (178)
T cd03247 70 EKALSSLISVLNQRPYLFDT-TLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPI 132 (178)
T ss_pred HHHHHhhEEEEccCCeeecc-cHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 11122223444554433321 222222 1345555566665666778899999999999998864
No 244
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.25 E-value=8.7e-12 Score=104.04 Aligned_cols=159 Identities=15% Similarity=0.201 Sum_probs=93.0
Q ss_pred ccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC---
Q 023731 10 IEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD--- 83 (278)
Q Consensus 10 ~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D--- 83 (278)
++-.+ +++||.+ +++|||| .++++.+.|+.|++||||||.-|+|.+.+.+ .|-..+...
T Consensus 3 L~ie~vtK~Fg~k~av~~isf---------------~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~ 67 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISF---------------EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS 67 (300)
T ss_pred eEEecchhccCceeeecceee---------------eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh
Confidence 33344 8999997 5999999 9999999999999999999999999999875 333333331
Q ss_pred --------------CCCCCCCHHHHHHccccCCCCCCcccHHHHHH----HHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 84 --------------SFYHNLTEQELARVHEYNFDHPDAFDTEKLLS----SMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 84 --------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
..|+.++..+...+ |..-.........+ .|+.+.....- .+...+.+..+......
T Consensus 68 ~~~~~rIGyLPEERGLy~k~tv~dql~y----la~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfis 143 (300)
T COG4152 68 QEIKNRIGYLPEERGLYPKMTVEDQLKY----LAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFIS 143 (300)
T ss_pred hhhhhhcccChhhhccCccCcHHHHHHH----HHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHH
Confidence 23333333222111 11111222233333 33333332211 22234444444433333
Q ss_pred cccCCCcEEEEcccccCCchHHhhhc----------CeEEEEecChhhhhHHhh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVRELM----------NMKIFVDTDADVRLARRI 187 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~~~----------d~~I~l~~~~e~~~~R~~ 187 (278)
..+-.|+++|+|+|++++||-..+.+ +..|-+..+...-.+++.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLC 197 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC 197 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHh
Confidence 44578999999999999997322111 345555665555555543
No 245
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=9.2e-12 Score=110.32 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=47.6
Q ss_pred ccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 10 IEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
|+.++ .+.|++ .+|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl---------------~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSV---------------EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEE---------------EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEe
Confidence 56666 888974 37999999 9999999999999999999999999999864 3444443
No 246
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.6e-11 Score=105.97 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=46.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
||+.++ ++.|++ ..+++||| .+.+|.+++|.|++|||||||++.|++.+.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNL---------------DVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EEEEeeeEEEECCEEeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 677777 899987 67999999 9999999999999999999999999998753
No 247
>PRK03839 putative kinase; Provisional
Probab=99.25 E-value=8.1e-11 Score=96.35 Aligned_cols=100 Identities=22% Similarity=0.310 Sum_probs=63.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP 129 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~ 129 (278)
.|.|+|++||||||+++.|++.+ ++.+++.|+++.... ... .+.......+..+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~---~~~~id~d~~~~~~~------~~~-~~~~~~~~~~~~l~~~~~~---------- 61 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL---GYEYVDLTEFALKKG------IGE-EKDDEMEIDFDKLAYFIEE---------- 61 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEehhhhhhhcC------Ccc-cCChhhhcCHHHHHHHHHH----------
Confidence 58999999999999999999998 588999998763211 111 1111111111222121111
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhcc
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
... ...+|+||....+ ...|.+|||+++.+++.+|+..|.
T Consensus 62 ---------------~~~-~~~vIidG~~~~l-----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 62 ---------------EFK-EKNVVLDGHLSHL-----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---------------hcc-CCCEEEEeccccc-----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 001 1225777754332 236899999999999999998775
No 248
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.8e-11 Score=104.41 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=79.5
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY------ 86 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~------ 86 (278)
+++|++ ..++++|| .+.+|.+++|+|++|||||||.+.|++.+++ .|...++..+..
T Consensus 7 ~~~~~~~~il~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 7 SKFYGGFVALDGVSL---------------DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK 71 (232)
T ss_pred EEEeCCeeeeccceE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhh
Confidence 788877 56999999 9999999999999999999999999999865 344444432211
Q ss_pred -------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCCCcE
Q 023731 87 -------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 87 -------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
..++..++..+...............+.+.++.+....... ...++.+..++....+..+.++++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 11121111111000000000000111222233222221111 124444445555555667789999
Q ss_pred EEEcccccCCchHHh
Q 023731 152 ILLEGILVFHDSRVR 166 (278)
Q Consensus 152 iiidg~~~~~d~~~~ 166 (278)
+++|+|+..+|+...
T Consensus 152 lllDEP~~gLD~~~~ 166 (232)
T cd03300 152 LLLDEPLGALDLKLR 166 (232)
T ss_pred EEEcCCcccCCHHHH
Confidence 999999999987533
No 249
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2e-11 Score=106.84 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=47.4
Q ss_pred hhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 7 VDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
.-+|+.++ +++|++ ..|++||| .+.++.+++|+|++|||||||++.|++.+.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~---------------~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSM---------------GFPARAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 44677777 999987 57999999 9999999999999999999999999998763
No 250
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.25 E-value=7.9e-12 Score=101.10 Aligned_cols=116 Identities=9% Similarity=-0.011 Sum_probs=75.1
Q ss_pred eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCH
Q 023731 15 GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTE 91 (278)
Q Consensus 15 ~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~ 91 (278)
+++|+ + ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..
T Consensus 7 ~~~~~~~~~~l~~i~l---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-------- 63 (166)
T cd03223 7 SLATPDGRVLLKDLSF---------------EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-------- 63 (166)
T ss_pred EEEcCCCCeeeecCeE---------------EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--------
Confidence 67784 3 57999999 9999999999999999999999999998764 233333221
Q ss_pred HHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 92 QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+.++++..+. ....+.+... ....++.+..++....+..+.+++++++|+|++.+|+.
T Consensus 64 ----~~i~~~~q~~~~~~-~tv~~nl~~~------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~ 125 (166)
T cd03223 64 ----EDLLFLPQRPYLPL-GTLREQLIYP------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE 125 (166)
T ss_pred ----ceEEEECCCCcccc-ccHHHHhhcc------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence 01112222221111 1122222110 11345555566666666778899999999999998864
No 251
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.9e-12 Score=110.69 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=81.7
Q ss_pred hccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 9 MIEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
||+.++ ++.|++ ..|++||| .+.+|.+++|.|++|||||||++.|++.+++ .|-..++.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l---------------~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 68 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSF---------------SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 566667 888974 26999999 9999999999999999999999999998764 23333332
Q ss_pred --------------------CC--CCCCCCHHHHHHccccCCCCCCcccHH----HHHHHHHHhhcCCCcc--ccccCCc
Q 023731 83 --------------------DS--FYHNLTEQELARVHEYNFDHPDAFDTE----KLLSSMEKLRHGQAVD--IPNYDFK 134 (278)
Q Consensus 83 --------------------D~--~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~l~~~~~~~~i~--~~~~~~~ 134 (278)
+. ++...+..++..+..... ..... ...+.++.+....... ...++.+
T Consensus 69 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 144 (277)
T PRK13642 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ----GIPREEMIKRVDEALLAVNMLDFKTREPARLSGG 144 (277)
T ss_pred EECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc----CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHH
Confidence 21 111122222111110000 01111 1122222221111111 1244445
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++...++..+.+++++++|+|+..+|+.
T Consensus 145 ~~qrv~lAraL~~~p~llllDEPt~~LD~~ 174 (277)
T PRK13642 145 QKQRVAVAGIIALRPEIIILDESTSMLDPT 174 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 555555556677899999999999999974
No 252
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.25 E-value=5.1e-11 Score=105.75 Aligned_cols=160 Identities=14% Similarity=0.242 Sum_probs=86.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH----HHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEK 119 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~ 119 (278)
..+++..|+|+|++||||||+++.|++.+ ++.+++.|.............+ |. .+..+.+. +.+..
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D~~i~~~~G~~i~ei----~~---~~G~~~fr~~e~~~l~~ 198 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELNREIEREAGLSVSEI----FA---LYGQEGYRRLERRALER 198 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHHHHHHHHhCCCHHHH----HH---HHCHHHHHHHHHHHHHH
Confidence 56888899999999999999999999998 5777777754311110000000 00 00011111 11111
Q ss_pred hhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhh---hcCeEEEEecChhhhhHHhhhccccc---
Q 023731 120 LRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE---LMNMKIFVDTDADVRLARRIRRDTVE--- 193 (278)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~---~~d~~I~l~~~~e~~~~R~~~R~~~~--- 193 (278)
+ ....+.++|-.|.....++.... ...++|||+++.+.+.+|+.+|....
T Consensus 199 l------------------------l~~~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~ 254 (309)
T PRK08154 199 L------------------------IAEHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMA 254 (309)
T ss_pred H------------------------HhhCCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCC
Confidence 1 11122345555554443332211 12479999999999999998875321
Q ss_pred cCCC-HHHHHHHHhhccccccccccccccccccEEeeCCCCcH-HHHHHHHHHHH
Q 023731 194 KGRD-IATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIR 246 (278)
Q Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~-~~~~~l~~~I~ 246 (278)
.... .+.+.. ......+.| +.+|++|++++.+. ...+.+.+.+.
T Consensus 255 ~~~~~~e~i~~-~~~~R~~~y--------~~ad~~I~t~~~s~ee~~~~I~~~l~ 300 (309)
T PRK08154 255 DNREAMEDLRR-ILASREPLY--------ARADAVVDTSGLTVAQSLARLRELVR 300 (309)
T ss_pred CCCChHHHHHH-HHHHHHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1122 233333 333334444 34999999887543 33344444443
No 253
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=107.10 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=84.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc----
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN---- 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~---- 81 (278)
+|..++ ++.|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.+++ .|...++
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTV---------------EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEECCEEEeeecce---------------EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh
Confidence 566666 889987 57999999 9999999999999999999999999998754 2333333
Q ss_pred ----------------CCC-CCCCCCHHHHHHccccCC----CCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 82 ----------------QDS-FYHNLTEQELARVHEYNF----DHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 82 ----------------~D~-~~~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
++. ++...+..++..+..... ......+...+.+.++.+...... ....++.+..++
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHH
Confidence 221 111222222222111000 000000111233334333222111 112445555555
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|+..+|+.
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHH
Confidence 55556677899999999999999875
No 254
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.25 E-value=2.1e-11 Score=105.59 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=49.2
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
+|+.++ .++|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.+++ .|...++.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 66 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSL---------------QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG 66 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 466666 889987 56999999 9999999999999999999999999998764 34444444
No 255
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.2e-11 Score=104.92 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=45.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
||+..+ .+.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINL---------------PIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred eEEEeccEEEECCeeeeecceE---------------EecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 466666 889987 57999999 9999999999999999999999999998763
No 256
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=1.5e-11 Score=109.63 Aligned_cols=59 Identities=12% Similarity=0.216 Sum_probs=49.0
Q ss_pred hccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 9 MIEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
||+.++ ++.|++ .+|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|-..+
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl---------------~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i 85 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISY---------------TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV 85 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 467777 888864 37999999 9999999999999999999999999998864 344555
Q ss_pred cC
Q 023731 81 NQ 82 (278)
Q Consensus 81 ~~ 82 (278)
+.
T Consensus 86 ~g 87 (320)
T PRK13631 86 GD 87 (320)
T ss_pred CC
Confidence 43
No 257
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.8e-11 Score=109.46 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=87.4
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----CCE
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRV 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-----~~~ 77 (278)
||+.++ ++.|++ .+|+|||| .+.+|.+++|.|+||||||||++.|++.+.+ .|.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~ 67 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISY---------------SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK 67 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEE---------------EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceE
Confidence 466666 899976 36999999 9999999999999999999999999998862 344
Q ss_pred EEEcCCCCCCCCCHHHHHH----ccccCCCCCC-ccc------------------------HHHHHHHHHHhhcCCC--c
Q 023731 78 VLVNQDSFYHNLTEQELAR----VHEYNFDHPD-AFD------------------------TEKLLSSMEKLRHGQA--V 126 (278)
Q Consensus 78 ~~i~~D~~~~~~~~~~~~~----~~~~~~~~~~-~~d------------------------~~~~~~~l~~~~~~~~--i 126 (278)
..++..+.. .++...... ...+.|+++. .++ .+...+.++.+..... .
T Consensus 68 i~~~G~~i~-~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 68 LEFNGQDLQ-RISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred EEECCEECC-cCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH
Confidence 555554332 122222211 1233343321 011 1112233333322210 0
Q ss_pred --ccc-ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 127 --DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 127 --~~~-~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+| .++.+..+++..++..+.+++++|+|+|+..+|..
T Consensus 147 l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~ 187 (326)
T PRK11022 147 LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187 (326)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 112 45555556665666677899999999999999974
No 258
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.24 E-value=2.4e-11 Score=102.22 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=79.3
Q ss_pred eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE-------------
Q 023731 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV------------- 80 (278)
Q Consensus 15 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i------------- 80 (278)
++.|++ .+.++|| .+.++.+++|.|++|||||||++.|++.+.+ .|-..+
T Consensus 7 ~~~~~~-~~~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 7 RYEYEH-LPMEFDL---------------NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeCC-cceeeEE---------------EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhcc
Confidence 677875 5679999 9999999999999999999999999998754 232333
Q ss_pred -----cCCC-CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccc--cccCCcCCcCCCCCccccCCCcEE
Q 023731 81 -----NQDS-FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDI--PNYDFKSYKNNVFPARRVNPSDVI 152 (278)
Q Consensus 81 -----~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~ii 152 (278)
.++. ++..++..++..+.................+.++.+........ ..++.+..++....+..+.+++++
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 150 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPIL 150 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3331 22223333322211000000000111223334444333221111 245555555655556677899999
Q ss_pred EEcccccCCchH
Q 023731 153 LLEGILVFHDSR 164 (278)
Q Consensus 153 iidg~~~~~d~~ 164 (278)
++|+|++.+|+.
T Consensus 151 llDEPt~~LD~~ 162 (213)
T TIGR01277 151 LLDEPFSALDPL 162 (213)
T ss_pred EEcCCCccCCHH
Confidence 999999999875
No 259
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.7e-11 Score=107.03 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=82.5
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc---
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN--- 81 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~--- 81 (278)
+|+.++ +++|+ + ..|+|+|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 70 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASF---------------TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP 70 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 356666 88995 3 57999999 9999999999999999999999999998754 2323332
Q ss_pred --------------CCCCC---CCCCHHHHHHcccc----CCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcC
Q 023731 82 --------------QDSFY---HNLTEQELARVHEY----NFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKN 138 (278)
Q Consensus 82 --------------~D~~~---~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~ 138 (278)
++... ......++..++.+ .+..+...+.+...+.++.+...... ....++.+..++
T Consensus 71 i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 71 TRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKR 150 (272)
T ss_pred hHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH
Confidence 22111 00011111100000 00000001112233344443332211 112445555555
Q ss_pred CCCCccccCCCcEEEEcccccCCchHH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
....+..+.+++++++|+|++.+|+..
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~ 177 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKT 177 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 555566778999999999999998753
No 260
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.24 E-value=7.8e-11 Score=98.02 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=44.8
Q ss_pred ccCCC-CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCC
Q 023731 31 KETGQ-PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFY 86 (278)
Q Consensus 31 ~~~~~-~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~~~ 86 (278)
|+++. ++...+....+++.+|+|+|++||||||+++.|++.+.. .+..+++.|++.
T Consensus 6 ~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 6 WHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred cccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 44444 777777777789999999999999999999999998753 346788887755
No 261
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=1.1e-11 Score=108.99 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=82.4
Q ss_pred ccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 10 IEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
++..+ ++.|++ .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~ 67 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNT---------------EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD 67 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 45555 888863 37999999 9999999999999999999999999998764 3444444
Q ss_pred CCCCCCC---CCHHHHHHccccCCCCCC-------------------cccHH----HHHHHHHHhhcC-CCc--cccccC
Q 023731 82 QDSFYHN---LTEQELARVHEYNFDHPD-------------------AFDTE----KLLSSMEKLRHG-QAV--DIPNYD 132 (278)
Q Consensus 82 ~D~~~~~---~~~~~~~~~~~~~~~~~~-------------------~~d~~----~~~~~l~~~~~~-~~i--~~~~~~ 132 (278)
..+.... ...........+.|+++. .++.. ...+.+..+... ... ....++
T Consensus 68 g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (286)
T PRK13646 68 DITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147 (286)
T ss_pred CEECccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 3222110 001111111222233221 01111 122233333221 111 112344
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..++...++..+.+++++++|+|++.+|+.
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 44445555556677899999999999999974
No 262
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-11 Score=106.88 Aligned_cols=146 Identities=18% Similarity=0.242 Sum_probs=100.2
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHHc----
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARV---- 97 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~---- 97 (278)
++|+|| .++.|.|..|.|.||||||||.++|.+...| .|-..++..+... ++......+
T Consensus 44 v~~~sl---------------~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~-~~~~~Lr~~Rr~~ 107 (386)
T COG4175 44 VNDASL---------------DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK-LSAAELRELRRKK 107 (386)
T ss_pred ecccee---------------eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc-CCHHHHHHHHhhh
Confidence 899999 9999999999999999999999999998865 4667777776553 333332211
Q ss_pred cccCCCCCCc------------------cc-H---HHHHHHHHHhhcCC-Ccccc-ccCCcCCcCCCCCccccCCCcEEE
Q 023731 98 HEYNFDHPDA------------------FD-T---EKLLSSMEKLRHGQ-AVDIP-NYDFKSYKNNVFPARRVNPSDVIL 153 (278)
Q Consensus 98 ~~~~~~~~~~------------------~d-~---~~~~~~l~~~~~~~-~i~~~-~~~~~~~~~~~~~~~~~~~~~iii 153 (278)
..+.|+...- .. . ++..+.|+.....+ .-.+| .++.+..+|+..++....++++++
T Consensus 108 ~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlL 187 (386)
T COG4175 108 ISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILL 187 (386)
T ss_pred hhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEE
Confidence 1222332110 11 1 22333333332222 12334 677788888887788889999999
Q ss_pred EcccccCCchHHhhhc------------CeEEEEecChhhhhH
Q 023731 154 LEGILVFHDSRVRELM------------NMKIFVDTDADVRLA 184 (278)
Q Consensus 154 idg~~~~~d~~~~~~~------------d~~I~l~~~~e~~~~ 184 (278)
+|++++.+||-++... -.+|||..+.+++++
T Consensus 188 MDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlr 230 (386)
T COG4175 188 MDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALR 230 (386)
T ss_pred ecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHh
Confidence 9999999998655332 479999999998765
No 263
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.8e-11 Score=105.05 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=46.2
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
+|+.++ ++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+++
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~---------------~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSM---------------EIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 467777 889987 57999999 9999999999999999999999999999875
No 264
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=3e-11 Score=104.18 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=51.0
Q ss_pred hhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC------CEE
Q 023731 7 VDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVV 78 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~------~~~ 78 (278)
.-+|+.++ ++.|++ .+|+++|| .+.+|.+++|.|++|||||||++.|++.+.+. |..
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINM---------------DFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV 66 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence 34566666 888987 57999999 99999999999999999999999999988753 555
Q ss_pred EEcCC
Q 023731 79 LVNQD 83 (278)
Q Consensus 79 ~i~~D 83 (278)
.++..
T Consensus 67 ~~~g~ 71 (251)
T PRK14249 67 LLDNE 71 (251)
T ss_pred EECCE
Confidence 55543
No 265
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.24 E-value=1.8e-11 Score=111.26 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=92.4
Q ss_pred eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC---CCCC
Q 023731 15 GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF---YHNL 89 (278)
Q Consensus 15 ~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~---~~~~ 89 (278)
.+.|+++ .|+|+|| .+.++.+++|.|+||||||||+++|++.+.+ .|..+++..+. ....
T Consensus 31 ~~~~g~~~~l~~vsf---------------~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~ 95 (382)
T TIGR03415 31 LDETGLVVGVANASL---------------DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC 95 (382)
T ss_pred HHhhCCEEEEEeeEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC
Confidence 5789885 5999999 9999999999999999999999999998864 45566654210 1111
Q ss_pred CHHHHH----HccccCCCCCCccc----------------------HHHHHHHHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 90 TEQELA----RVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 90 ~~~~~~----~~~~~~~~~~~~~d----------------------~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
...... ....+.|+++..+. .....+.++.+...... ....++.+..++...
T Consensus 96 ~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~L 175 (382)
T TIGR03415 96 DAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGL 175 (382)
T ss_pred CHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 111111 11223333322111 11122333333222211 112455555566556
Q ss_pred CccccCCCcEEEEcccccCCchHHhhhc-----------C-eEEEEecChhhh
Q 023731 142 PARRVNPSDVILLEGILVFHDSRVRELM-----------N-MKIFVDTDADVR 182 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~~~~~-----------d-~~I~l~~~~e~~ 182 (278)
.+..+.+++++++|+|++.+|+..+..+ . .+|++..+.+..
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~ 228 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEA 228 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 6667789999999999999998543221 2 466776666653
No 266
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.23 E-value=1.9e-11 Score=115.29 Aligned_cols=141 Identities=9% Similarity=0.085 Sum_probs=88.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|+|+||||||||++.|++.+.+ .|...++....
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSL---------------TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcCCeeecccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccc
Confidence 677777 999987 57999999 9999999999999999999999999998864 34444443222
Q ss_pred CCCCCHHHHHHccccCCCCCC--------------c---c-----cHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 86 YHNLTEQELARVHEYNFDHPD--------------A---F-----DTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~--------------~---~-----d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
.. ...........+.++.+. . + +.+...+.+..+...... ....++.+..++...
T Consensus 68 ~~-~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 68 TR-LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred cc-CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHH
Confidence 11 111111111111121110 0 0 112233444444332211 223555566666666
Q ss_pred CccccCCCcEEEEcccccCCchHH
Q 023731 142 PARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
++..+.+++++++|+|++.+|+..
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~ 170 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVAS 170 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHH
Confidence 667778999999999999999743
No 267
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=104.33 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=44.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+|+.++ ++.|++ .+|+|+|| .+.+|.+++|+|++|||||||++.|++.+.
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSM---------------DFPENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 466666 889976 57999999 999999999999999999999999999874
No 268
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.2e-11 Score=108.89 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=86.4
Q ss_pred hccCCc-eeeeC----------C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C
Q 023731 9 MIEASS-GVHFS----------G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q 75 (278)
Q Consensus 9 ~~~~~~-~~~~~----------~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~ 75 (278)
||+.++ .+.|+ . .+|++||| .+.+|.+++|+|+||||||||++.|++.+.+ .
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~ 69 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSF---------------TLERGKTLAVVGESGCGKSTLARLLTMIETPTG 69 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEE---------------EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Confidence 567777 88885 1 46999999 9999999999999999999999999998764 3
Q ss_pred CEEEEcCCCCCCCCCHHHH---HHccccCCCCCC-cc--------------------cH----HHHHHHHHHhhcCCC--
Q 023731 76 RVVLVNQDSFYHNLTEQEL---ARVHEYNFDHPD-AF--------------------DT----EKLLSSMEKLRHGQA-- 125 (278)
Q Consensus 76 ~~~~i~~D~~~~~~~~~~~---~~~~~~~~~~~~-~~--------------------d~----~~~~~~l~~~~~~~~-- 125 (278)
|...++..+.. .++.... .....+.|+++. .+ .. +...+.++.+.....
T Consensus 70 G~i~~~g~~l~-~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 148 (327)
T PRK11308 70 GELYYQGQDLL-KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY 148 (327)
T ss_pred cEEEECCEEcC-cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHh
Confidence 44555543322 1222111 111233343331 01 11 122233333322110
Q ss_pred -ccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 126 -VDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 126 -i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.....++.+..++...++..+.+++++|+|+|++.+|..
T Consensus 149 ~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred cCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 111244555556665666677899999999999999964
No 269
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.23 E-value=2.5e-11 Score=109.76 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=91.1
Q ss_pred CCceeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC----
Q 023731 12 ASSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY---- 86 (278)
Q Consensus 12 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~---- 86 (278)
.+.++.|+++.+ ++|| .+.++.+++|.|+||||||||++.|++.+.+ .|...++..++.
T Consensus 3 ~~l~~~~~~~~~-~isl---------------~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~ 66 (354)
T TIGR02142 3 ARFSKRLGDFSL-DADF---------------TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRK 66 (354)
T ss_pred EEEEEEECCEEE-EEEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCcc
Confidence 345889998778 9999 9999999999999999999999999998764 343444332221
Q ss_pred ---------------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCc
Q 023731 87 ---------------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPA 143 (278)
Q Consensus 87 ---------------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~ 143 (278)
..++..++..++.... ..........+.++.+...... ....++.+..++...++
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAr 144 (354)
T TIGR02142 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGR 144 (354)
T ss_pred ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 1122222221110000 0000011233344443332211 11245555556666666
Q ss_pred cccCCCcEEEEcccccCCchHHhh--------h---cC-eEEEEecChhhh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVRE--------L---MN-MKIFVDTDADVR 182 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~~--------~---~d-~~I~l~~~~e~~ 182 (278)
..+.+++++++|+|++.+|+.... . .+ .+|++..+.+..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~ 195 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV 195 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 777899999999999999975331 1 13 356666666543
No 270
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.7e-11 Score=104.35 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=44.7
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
||+-++ ++.|++ ..++++|| .+.+|.+++|.|++|||||||++.|++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTM---------------KIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeE---------------eecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 566666 888976 57999999 999999999999999999999999999765
No 271
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.3e-11 Score=106.27 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=83.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
||+.++ +++|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|...+
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~---------------~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHL---------------KIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLY 84 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeee---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEE
Confidence 677777 999987 57999999 9999999999999999999999999987642 344444
Q ss_pred cCCCCCC-CCCHHHHHHccccCCCCCCcccH--------------------HHHHHHHHHhhcC----C--CccccccCC
Q 023731 81 NQDSFYH-NLTEQELARVHEYNFDHPDAFDT--------------------EKLLSSMEKLRHG----Q--AVDIPNYDF 133 (278)
Q Consensus 81 ~~D~~~~-~~~~~~~~~~~~~~~~~~~~~d~--------------------~~~~~~l~~~~~~----~--~i~~~~~~~ 133 (278)
+..+... ............+.++++..+.. +.+.+.++.+... . ......++.
T Consensus 85 ~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 164 (274)
T PRK14265 85 RDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSG 164 (274)
T ss_pred CCEecccccchhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCH
Confidence 4433221 00011111111222222211110 1111122211110 0 001123444
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+..+++..++..+.+++++++|+|++.+|+..
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~ 196 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 44555555566678999999999999998753
No 272
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.23 E-value=2.1e-11 Score=104.23 Aligned_cols=135 Identities=15% Similarity=0.163 Sum_probs=76.5
Q ss_pred eeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC----------
Q 023731 16 VHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD---------- 83 (278)
Q Consensus 16 ~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D---------- 83 (278)
+.|+. ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|...++..
T Consensus 29 ~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 93 (236)
T cd03267 29 RKYREVEALKGISF---------------TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93 (236)
T ss_pred cccCCeeeeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhc
Confidence 55677 46999999 9999999999999999999999999998754 233333221
Q ss_pred -----------CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCc
Q 023731 84 -----------SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 84 -----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
.++..++..++..+.............+...+.++.+...... ....++.+..++....+..+.+++
T Consensus 94 ~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 173 (236)
T cd03267 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE 173 (236)
T ss_pred ccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1122222222211111000000000011122223322221111 112344455555555556678899
Q ss_pred EEEEcccccCCchHH
Q 023731 151 VILLEGILVFHDSRV 165 (278)
Q Consensus 151 iiiidg~~~~~d~~~ 165 (278)
++++|+|.+.+|+..
T Consensus 174 llllDEPt~~LD~~~ 188 (236)
T cd03267 174 ILFLDEPTIGLDVVA 188 (236)
T ss_pred EEEEcCCCCCCCHHH
Confidence 999999999998753
No 273
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.23 E-value=2.6e-11 Score=105.61 Aligned_cols=140 Identities=11% Similarity=0.179 Sum_probs=82.5
Q ss_pred hccCCc-eeeeC---------C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC
Q 023731 9 MIEASS-GVHFS---------G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR 76 (278)
Q Consensus 9 ~~~~~~-~~~~~---------~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~ 76 (278)
||+.++ ++.|+ + ..++|+|| .+.++.+++|+|++|||||||++.|++.+.+ .|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG 67 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSL---------------SLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 566777 88897 2 57999999 9999999999999999999999999998753 34
Q ss_pred EEEEcCCCCCCCCCHH---HHHHccccCCCCCC---------------------cccH----HHHHHHHHHhhcCC-Cc-
Q 023731 77 VVLVNQDSFYHNLTEQ---ELARVHEYNFDHPD---------------------AFDT----EKLLSSMEKLRHGQ-AV- 126 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~---~~~~~~~~~~~~~~---------------------~~d~----~~~~~~l~~~~~~~-~i- 126 (278)
...++..+... .... .......+.++++. .++. ..+.+.+..+.... ..
T Consensus 68 ~i~~~g~~~~~-~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 146 (268)
T PRK10419 68 NVSWRGEPLAK-LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146 (268)
T ss_pred EEEECCEeccc-cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 34443322110 1100 00111111111110 0011 12223333332211 11
Q ss_pred -cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 127 -DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 127 -~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....++.+..++....+..+.+++++++|+|++.+|+.
T Consensus 147 ~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~ 185 (268)
T PRK10419 147 KRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185 (268)
T ss_pred CCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 11234444445555556677899999999999999874
No 274
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.5e-11 Score=103.68 Aligned_cols=142 Identities=12% Similarity=0.191 Sum_probs=82.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh---CC---CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL---HD---QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l---~~---~~~~~i 80 (278)
||+.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.. ++ .|...+
T Consensus 3 ~l~~~~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~ 67 (250)
T PRK14245 3 KIDARDVNFWYGDFHALKGISM---------------EIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRI 67 (250)
T ss_pred EEEEEEEEEEECCEeEEeeeeE---------------EEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEE
Confidence 566666 888987 56999999 99999999999999999999999999862 22 355555
Q ss_pred cCCCCCCC-CCHHHHHHccccCCCCCCccc----------------------HHHHHHHHHHhhcCCC----c--ccccc
Q 023731 81 NQDSFYHN-LTEQELARVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQA----V--DIPNY 131 (278)
Q Consensus 81 ~~D~~~~~-~~~~~~~~~~~~~~~~~~~~d----------------------~~~~~~~l~~~~~~~~----i--~~~~~ 131 (278)
+..+.... ...........|.++++..+. .....+.++.+..... . ....+
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14245 68 DGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFAL 147 (250)
T ss_pred CCEecccccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccC
Confidence 44332210 000111111112222111110 0112222332221110 0 11234
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+.+..++...++..+.+++++++|+|++.+|+..
T Consensus 148 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 181 (250)
T PRK14245 148 SGGQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181 (250)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 4444555555566778999999999999998753
No 275
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.22 E-value=5.1e-12 Score=120.28 Aligned_cols=115 Identities=18% Similarity=0.238 Sum_probs=76.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--------------------CEEEEcCCCCCCCCCHHHHHHccccCCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVVLVNQDSFYHNLTEQELARVHEYNFD 103 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--------------------~~~~i~~D~~~~~~~~~~~~~~~~~~~~ 103 (278)
++++|..++|+|+||||||||++.|.+.+++. .+.++++|.+..+-+.+++..++.
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~---- 432 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGR---- 432 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccC----
Confidence 89999999999999999999999999998652 245666777665556666555432
Q ss_pred CCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 104 HPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 104 ~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+. .+.+.+.+.++. +..|-...+ ..++.+..+|...++..+.+++++++|++.+.+|++
T Consensus 433 -~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~ 504 (529)
T TIGR02868 433 -PD-ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAG 504 (529)
T ss_pred -CC-CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 21 233344444433 222212111 124444455555667778999999999999998864
No 276
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.22 E-value=1.9e-10 Score=93.79 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
++.+|.++|++||||||+|+.|++.+.. .+..++.|+|+.
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~ 40 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIE 40 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHH
Confidence 3578999999999999999999998742 234556777663
No 277
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.22 E-value=2.7e-11 Score=103.89 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=44.2
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh--C-CCCEEEEcC
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--H-DQRVVLVNQ 82 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l--~-~~~~~~i~~ 82 (278)
++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+ . ..|...++.
T Consensus 7 ~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 63 (243)
T TIGR01978 7 HVSVEDKEILKGVNL---------------TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG 63 (243)
T ss_pred EEEECCEEEEeccce---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECC
Confidence 788877 57999999 99999999999999999999999999984 2 234444444
No 278
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.22 E-value=3.4e-10 Score=92.49 Aligned_cols=86 Identities=16% Similarity=0.275 Sum_probs=49.2
Q ss_pred CCCcEEEEcccccCCchHHhhhc--CeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhccccccccccccccccc
Q 023731 147 NPSDVILLEGILVFHDSRVRELM--NMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYA 224 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~~~~~~--d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a 224 (278)
..+..+++++..... ..+...+ ...|||+++.+++.+|+..|... ..+.+...+.. .+.|. ...+
T Consensus 88 ~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~----~~~~~~~rl~~--~~~~~------~~~~ 154 (179)
T TIGR02322 88 EAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGRE----SREEIEERLAR--SARFA------AAPA 154 (179)
T ss_pred hcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCCC----CHHHHHHHHHH--Hhhcc------cccC
Confidence 455667888765432 3333333 37999999999999999988532 22333333322 11111 1456
Q ss_pred cEE-eeCCCCcHHHHHHHHHHHHHhh
Q 023731 225 DII-IPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 225 D~i-I~n~~~~~~~~~~l~~~I~~~l 249 (278)
|++ |+|+.+ +++++++|.+.+
T Consensus 155 ~~~vi~~~~~----~ee~~~~i~~~l 176 (179)
T TIGR02322 155 DVTTIDNSGS----LEVAGETLLRLL 176 (179)
T ss_pred CEEEEeCCCC----HHHHHHHHHHHH
Confidence 766 556543 566666666554
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.22 E-value=2.7e-11 Score=114.57 Aligned_cols=140 Identities=11% Similarity=0.117 Sum_probs=85.6
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEcCCC
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDS 84 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---~~~~~i~~D~ 84 (278)
|+.++ ++.|++ .+|++||| .+.+|.+++|+|++|||||||++.|++.+++ .|...++..+
T Consensus 2 l~i~~l~~~~~~~~il~~isl---------------~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~ 66 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDL---------------EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSP 66 (500)
T ss_pred EEEEeEEEEeCCeEeecceEE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 45555 888987 56999999 9999999999999999999999999998764 4544443322
Q ss_pred C----------------------CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCc---cccccCCcC
Q 023731 85 F----------------------YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAV---DIPNYDFKS 135 (278)
Q Consensus 85 ~----------------------~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i---~~~~~~~~~ 135 (278)
. +..++..++..+..........++. +...+.++.+...... ....++.+.
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 146 (500)
T TIGR02633 67 LKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQ 146 (500)
T ss_pred CCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHH
Confidence 1 1112222222111100000000111 1233344444332211 122455555
Q ss_pred CcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 136 YKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 136 ~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+++..++..+.+++++++|+|++.+|+.
T Consensus 147 ~qrv~iA~al~~~p~lllLDEPt~~LD~~ 175 (500)
T TIGR02633 147 QQLVEIAKALNKQARLLILDEPSSSLTEK 175 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 66666666677899999999999999974
No 280
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.3e-11 Score=104.96 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=44.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
||+.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+
T Consensus 21 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 21 ILEVKDLSIYYGEKRAVNDISM---------------DIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred eEEEEEEEEEeCCceeeeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 577777 889987 57999999 99999999999999999999999999965
No 281
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.22 E-value=1.7e-11 Score=114.24 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=84.1
Q ss_pred hccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 9 MIEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
|+...+ ++.|++ .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSf---------------sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G 85 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISF---------------EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEE---------------EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 344444 566665 36888888 9999999999999999999999999999864 34444433
Q ss_pred C--------CCCCCCCHHHHHHccccCCCCCCcccHHH----HHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCC
Q 023731 83 D--------SFYHNLTEQELARVHEYNFDHPDAFDTEK----LLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 83 D--------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~ 148 (278)
. .+...++..++..+...... ++.+. ..+.++.+....... ...++.+..++...++..+.+
T Consensus 86 ~~~~i~~~~~l~~~lTV~EnL~l~~~~~~----~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~ 161 (549)
T PRK13545 86 SAALIAISSGLNGQLTGIENIELKGLMMG----LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN 161 (549)
T ss_pred EeeeEEeccccCCCCcHHHHHHhhhhhcC----CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 2 12223344443322111111 11122 223333332222121 224555556666666677789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|++.+|+.
T Consensus 162 P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 162 PDILVIDEALSVGDQT 177 (549)
T ss_pred CCEEEEECCcccCCHH
Confidence 9999999999999975
No 282
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=3.7e-11 Score=105.55 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=82.7
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC------CCCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH------DQRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~------~~~~~~i 80 (278)
||+..+ +++|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+. ..|...+
T Consensus 39 ~l~i~~l~~~~~~~~il~~is~---------------~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i 103 (285)
T PRK14254 39 VIEARDLNVFYGDEQALDDVSM---------------DIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103 (285)
T ss_pred eEEEEEEEEEECCEeeEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 466666 888977 57999999 999999999999999999999999999874 2344444
Q ss_pred cCCCCCC-CCCHHHHHHccccCCCCCCcc--------------------cHHHHHHHHHHhhcCC------CccccccCC
Q 023731 81 NQDSFYH-NLTEQELARVHEYNFDHPDAF--------------------DTEKLLSSMEKLRHGQ------AVDIPNYDF 133 (278)
Q Consensus 81 ~~D~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------d~~~~~~~l~~~~~~~------~i~~~~~~~ 133 (278)
+..+... ............+.++++..+ ....+.+.++.+.... ......++.
T Consensus 104 ~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSg 183 (285)
T PRK14254 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSG 183 (285)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCH
Confidence 3322110 000000011111111111100 0112223333322110 011124455
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+++..++..+.+++++++|+|++.+|+.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~ 214 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPV 214 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 5555555556677899999999999999875
No 283
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.22 E-value=2.9e-11 Score=104.73 Aligned_cols=141 Identities=14% Similarity=0.135 Sum_probs=85.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC-
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~- 84 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..+
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSF---------------DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeE---------------EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccc
Confidence 577777 899987 57999999 9999999999999999999999999998764 4545555433
Q ss_pred ----CCCCCCHHHH----HHccccCCCCCCc---------------------ccH----HHHHHHHHHhhcCC-Cc--cc
Q 023731 85 ----FYHNLTEQEL----ARVHEYNFDHPDA---------------------FDT----EKLLSSMEKLRHGQ-AV--DI 128 (278)
Q Consensus 85 ----~~~~~~~~~~----~~~~~~~~~~~~~---------------------~d~----~~~~~~l~~~~~~~-~i--~~ 128 (278)
.. ....... .....|.++++.. .+. ....+.++.+.... .. ..
T Consensus 71 ~~~~i~-~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 71 QLRDLY-ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred cccccc-cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 22 1111111 0011222222110 000 11222333332221 11 11
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..++.+..++...++..+.+++++++|+|++.+|+..
T Consensus 150 ~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~ 186 (258)
T PRK11701 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 2444455555555566778999999999999998753
No 284
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=2.3e-11 Score=99.53 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=88.4
Q ss_pred hccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC-
Q 023731 9 MIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~- 84 (278)
||+++| .++..|- .|++|+| ...+|.+.+|.||+||||||+.+.|++.+.| .|.+.+..-+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl---------------~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l 65 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSL---------------DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65 (259)
T ss_pred CeeeeeeEEEeecceeccCcce---------------eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcCh
Confidence 688888 9999995 5999999 9999999999999999999999999999874 3344444321
Q ss_pred --------------------CCCCCCHHHHHHccccCCCCCCc--ccHHHHHHHHHHhhcCC--CccccccCCcCCcCCC
Q 023731 85 --------------------FYHNLTEQELARVHEYNFDHPDA--FDTEKLLSSMEKLRHGQ--AVDIPNYDFKSYKNNV 140 (278)
Q Consensus 85 --------------------~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~l~~~~~~~--~i~~~~~~~~~~~~~~ 140 (278)
....++..+...++...+..... -|.......+....... .-.+...+.++.+|+.
T Consensus 66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVq 145 (259)
T COG4559 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQ 145 (259)
T ss_pred hhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHH
Confidence 11223334444555554432222 22222344444333221 1134555666666653
Q ss_pred CCcc------ccCCCcEEEEcccccCCch
Q 023731 141 FPAR------RVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 141 ~~~~------~~~~~~iiiidg~~~~~d~ 163 (278)
.++. -...++++++|+|.+.+|.
T Consensus 146 lARvLaQl~~~v~~~r~L~LDEPtsaLDi 174 (259)
T COG4559 146 LARVLAQLWPPVPSGRWLFLDEPTSALDI 174 (259)
T ss_pred HHHHHHHccCCCCCCceEEecCCccccch
Confidence 3221 2234569999999998864
No 285
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.22 E-value=2.6e-11 Score=103.25 Aligned_cols=125 Identities=13% Similarity=0.127 Sum_probs=73.0
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----CCEEEEcCCCCCCCCCHHHHHH
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRVVLVNQDSFYHNLTEQELAR 96 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-----~~~~~i~~D~~~~~~~~~~~~~ 96 (278)
++++||| .+.++.+++|.|++|||||||++.|++.+.+ .|-..++..++.. .. ....
T Consensus 1 ~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~-~~--~~~~ 62 (230)
T TIGR02770 1 LVQDLNL---------------SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP-LS--IRGR 62 (230)
T ss_pred CccceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh-hh--hhhh
Confidence 3689999 9999999999999999999999999999875 4545454432210 00 0000
Q ss_pred ccccCCCCCC------------------------cccHHHHHHHHHHhhcCC---Cc--cccccCCcCCcCCCCCccccC
Q 023731 97 VHEYNFDHPD------------------------AFDTEKLLSSMEKLRHGQ---AV--DIPNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 97 ~~~~~~~~~~------------------------~~d~~~~~~~l~~~~~~~---~i--~~~~~~~~~~~~~~~~~~~~~ 147 (278)
...+.++++. ....+...+.++.+.... .. ....++.+..+++...+..+.
T Consensus 63 ~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~ 142 (230)
T TIGR02770 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL 142 (230)
T ss_pred eeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc
Confidence 0111111110 000112233333332220 01 112344445555555566678
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|+|++.+|..
T Consensus 143 ~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 143 EPPFLIADEPTTDLDVV 159 (230)
T ss_pred CCCEEEEcCCccccCHH
Confidence 89999999999999864
No 286
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.21 E-value=1.5e-11 Score=118.52 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=82.8
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--------------------CEEEE
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------------------RVVLV 80 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--------------------~~~~i 80 (278)
..|+|+|| ++++|..++|+|+||||||||++.|.+.++.. .+.++
T Consensus 364 ~vL~~i~l---------------~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 364 TLAGPLNF---------------TLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred eeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEe
Confidence 45777777 99999999999999999999999999998432 35566
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHH---------HhhcCCCccc----cccCCcCCcCCCCCccccC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSME---------KLRHGQAVDI----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~---------~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~ 147 (278)
++|.+...-+.+++..++. + ..+.+.+.+.++ .+..|-.... ..++.+..+|...++..+.
T Consensus 429 ~Q~~~LF~~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 429 GQNPQLPHGTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred cCCCcCCCcCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 6776665556666555432 2 133333333333 3322322211 1344455556566677788
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|++++.+|++
T Consensus 503 ~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 503 PCQLLLLDEPTASLDAH 519 (588)
T ss_pred CCCEEEEeCCccCCCHH
Confidence 99999999999998875
No 287
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.21 E-value=1.9e-11 Score=101.49 Aligned_cols=135 Identities=12% Similarity=0.115 Sum_probs=78.7
Q ss_pred ccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC-
Q 023731 10 IEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY- 86 (278)
Q Consensus 10 ~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~- 86 (278)
|+.++ .+.|++..+.+++| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+..
T Consensus 2 l~~~~l~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~ 66 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSI---------------TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN 66 (195)
T ss_pred eEEEEeeEEECCcEEEEEEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh
Confidence 44455 78888755555999 9999999999999999999999999998754 344444432211
Q ss_pred ----------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCC
Q 023731 87 ----------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 87 ----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~ 148 (278)
...+..++..+...... ..+...+.++.+....... ...++.+..++....+..+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~ 141 (195)
T PRK13541 67 IAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQ 141 (195)
T ss_pred hhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence 11111111111000000 1112222233322211111 123444444555555666788
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|++.+|+.
T Consensus 142 p~~lllDEP~~~LD~~ 157 (195)
T PRK13541 142 SDLWLLDEVETNLSKE 157 (195)
T ss_pred CCEEEEeCCcccCCHH
Confidence 9999999999998864
No 288
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5.6e-11 Score=102.90 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=49.3
Q ss_pred chhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 5 TVVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 5 ~~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
.-.+||+.++ .++|++ ..|+|+|| .+.++.+++|.|++|||||||.+.|++.+.+
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~ 62 (257)
T PRK14246 6 SAEDVFNISRLYLYINDKAILKDITI---------------KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62 (257)
T ss_pred hhhhheeeeeEEEecCCceeEeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3457888888 999988 56999999 9999999999999999999999999998764
No 289
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.21 E-value=2.3e-11 Score=117.13 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=84.0
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------------------~~~i~ 81 (278)
++||+|++.+.+.|-......++++|..++|+|+||||||||++.|++.++|. | +.+++
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 423 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVS 423 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEc
Confidence 44444444333333333333399999999999999999999999999998752 2 34555
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHh---------hcCCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKL---------RHGQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---------~~~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+..+-+.+++..++ .++.++.+.+.+.++.. ..|-.... ..++.+..+|...++..+.+
T Consensus 424 Q~~~lf~~Ti~~Ni~~~-----~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~ 498 (582)
T PRK11176 424 QNVHLFNDTIANNIAYA-----RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_pred cCceeecchHHHHHhcC-----CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 66555444444444332 22234445554444432 22222111 12344444555555667789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|.+.+|+.
T Consensus 499 ~~ililDEptsaLD~~ 514 (582)
T PRK11176 499 SPILILDEATSALDTE 514 (582)
T ss_pred CCEEEEECccccCCHH
Confidence 9999999999999874
No 290
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.21 E-value=3e-11 Score=104.21 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=44.7
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
++.|++ ..|++||| ++.++.+++|+|+||||||||++.|++.+.+ .|...++.
T Consensus 7 ~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (252)
T TIGR03005 7 TKRFGILTVLDGLNF---------------SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEG 61 (252)
T ss_pred EEEeCCeeEEeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 788877 56999999 9999999999999999999999999998764 34444443
No 291
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=3.7e-11 Score=104.57 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred hhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 7 VDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
..||+..+ ++.|++ ..|++||| ++.+|.+++|.|++|||||||++.|++.+.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl---------------~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDM---------------QFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34577777 889977 56999999 999999999999999999999999999874
No 292
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=103.65 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=43.9
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+|+.++ ++.|++ ..++|+|| .+.++.+++|.|++|||||||++.|++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINL---------------DIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred eEEEEEEEEEECCceeeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 355556 889987 46999999 999999999999999999999999999754
No 293
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.21 E-value=1.7e-11 Score=102.42 Aligned_cols=128 Identities=17% Similarity=0.269 Sum_probs=81.2
Q ss_pred eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC-------EEEE
Q 023731 15 GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR-------VVLV 80 (278)
Q Consensus 15 ~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~-------~~~i 80 (278)
.++|++ ..|+++|| .++++.+++|.|++|||||||++.|++.+.+ .| +.++
T Consensus 7 ~~~~~~~~~~~~~il~~~s~---------------~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~ 71 (204)
T cd03250 7 SFTWDSGEQETSFTLKDINL---------------EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYV 71 (204)
T ss_pred EEecCCCCccccceeeeeeE---------------EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEE
Confidence 778875 47999999 9999999999999999999999999998754 23 4556
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHH------hhc---CCC--c--cccccCCcCCcCCCCCccccC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK------LRH---GQA--V--DIPNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~------~~~---~~~--i--~~~~~~~~~~~~~~~~~~~~~ 147 (278)
.++..+...+..++..+.. .++.+...+.++. +.. +.. . ....++.+..++....+..+.
T Consensus 72 ~q~~~l~~~t~~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 72 SQEPWIQNGTIRENILFGK-------PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred ecCchhccCcHHHHhccCC-------CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 6665443444444333211 1112222222211 111 100 0 112344444455555566778
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|+|.+.+|+.
T Consensus 145 ~p~llllDEP~~~LD~~ 161 (204)
T cd03250 145 DADIYLLDDPLSAVDAH 161 (204)
T ss_pred CCCEEEEeCccccCCHH
Confidence 99999999999998764
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.21 E-value=6.9e-11 Score=93.96 Aligned_cols=145 Identities=16% Similarity=0.177 Sum_probs=77.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccc
Q 023731 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPN 130 (278)
Q Consensus 51 I~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~ 130 (278)
|+|+|++||||||+++.|++.+ ++.+++.|.+...........+ +. .+..+.+...-....
T Consensus 2 i~l~G~~GsGKstla~~la~~l---~~~~~~~d~~~~~~~~~~~~~~----~~---~~~~~~~~~~e~~~~--------- 62 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL---GLPFVDLDELIEQRAGMSIPEI----FA---EEGEEGFRELEREVL--------- 62 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCEEEchHHHHHHcCCCHHHH----HH---HHCHHHHHHHHHHHH---------
Confidence 7899999999999999999998 5888899876633211110000 00 001111111100000
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCchHH---hhhcCeEEEEecChhhhhHHhhhccccccCCCH--HHHHHHH
Q 023731 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV---RELMNMKIFVDTDADVRLARRIRRDTVEKGRDI--ATVLDQY 205 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~---~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~--~~~~~~~ 205 (278)
.........+|..|.....+... ......+|||+++.+.+.+|+.+|......... +.+...+
T Consensus 63 ------------~~~~~~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~ 130 (154)
T cd00464 63 ------------LLLLTKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELL 130 (154)
T ss_pred ------------HHHhccCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHH
Confidence 00112223444444333334422 233568999999999999999887532222111 1222222
Q ss_pred hhccccccccccccccccccEEeeCCCCc
Q 023731 206 SKFVKPAFDDFILPTKKYADIIIPRGGDN 234 (278)
Q Consensus 206 ~~~~~~~~~~~i~~~~~~aD~iI~n~~~~ 234 (278)
.+ ..+. +.+.||++|++++.+
T Consensus 131 ~~-r~~~-------Y~~~ad~~i~~~~~~ 151 (154)
T cd00464 131 EE-REPL-------YREVADLTIDTDELS 151 (154)
T ss_pred HH-HHHH-------HHHhCcEEEECCCCC
Confidence 22 2223 357799999887543
No 295
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.5e-11 Score=104.36 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=49.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEE
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i 80 (278)
||+.++ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+ .|-..+
T Consensus 25 ~l~~~nl~~~~~~~~il~~vs~---------------~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i 89 (272)
T PRK14236 25 ALEVRNLNLFYGDKQALFDISM---------------RIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 (272)
T ss_pred EEEEEEEEEEECCeeEeeeEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEE
Confidence 466667 889977 57999999 9999999999999999999999999998752 455555
Q ss_pred cC
Q 023731 81 NQ 82 (278)
Q Consensus 81 ~~ 82 (278)
+.
T Consensus 90 ~g 91 (272)
T PRK14236 90 DG 91 (272)
T ss_pred CC
Confidence 44
No 296
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.20 E-value=1.9e-11 Score=103.35 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=40.7
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
+++|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+
T Consensus 9 ~~~~~~~~~~~l~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 9 SLRYRPNLPPVLKNISF---------------SIKPGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred EEecCCCCcccccceEE---------------EECCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 788864 57999999 9999999999999999999999999998753
No 297
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.20 E-value=1.6e-11 Score=103.73 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=40.6
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
.++|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+.+
T Consensus 9 ~~~~~~~~~~~l~~i~~---------------~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (220)
T cd03245 9 SFSYPNQEIPALDNVSL---------------TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred EEEcCCCCcccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 778864 47999999 9999999999999999999999999998753
No 298
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.20 E-value=3.6e-11 Score=114.45 Aligned_cols=140 Identities=13% Similarity=0.181 Sum_probs=86.3
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CC
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QR 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~ 76 (278)
||+..+ ++.|++ .+|++||| .+.+|.+++|+|+||||||||++.|++.+++ .|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl---------------~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G 69 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSL---------------QIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSG 69 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEE---------------EEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccce
Confidence 577777 899962 47999999 9999999999999999999999999999864 35
Q ss_pred EEEEcCCCCCCCCCHHHHH----HccccCCCCCC--c-------------------cc----HHHHHHHHHHhhcCC---
Q 023731 77 VVLVNQDSFYHNLTEQELA----RVHEYNFDHPD--A-------------------FD----TEKLLSSMEKLRHGQ--- 124 (278)
Q Consensus 77 ~~~i~~D~~~~~~~~~~~~----~~~~~~~~~~~--~-------------------~d----~~~~~~~l~~~~~~~--- 124 (278)
...++..+... ....... ....+.++++. . .. ...+.+.++.+....
T Consensus 70 ~i~~~g~~i~~-~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 148 (529)
T PRK15134 70 DIRFHGESLLH-ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK 148 (529)
T ss_pred EEEECCEeccc-CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH
Confidence 55554433211 1111100 01122222221 0 00 112223333332221
Q ss_pred --CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 125 --AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 125 --~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
......++.+..+++..++..+.+++++++|+|++.+|+.
T Consensus 149 ~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~ 190 (529)
T PRK15134 149 RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVS 190 (529)
T ss_pred HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHH
Confidence 0111245555556666666677899999999999999974
No 299
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.20 E-value=1.1e-11 Score=101.62 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=78.3
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+++ .|...++..+.. .....
T Consensus 6 ~~~~~~~~~l~~~~~---------------~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~ 69 (180)
T cd03214 6 SVGYGGRTVLDDLSL---------------SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-SLSPK 69 (180)
T ss_pred EEEECCeeeEeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-cCCHH
Confidence 678877 56999999 9999999999999999999999999998764 455555543322 11111
Q ss_pred HHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.......+.++ .++.+...... ....++.+..++....+..+.+++++++|+|+..+|+.
T Consensus 70 ~~~~~i~~~~q------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 131 (180)
T cd03214 70 ELARKIAYVPQ------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131 (180)
T ss_pred HHHHHHhHHHH------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11111111111 22222111111 11245555556655566677899999999999998864
No 300
>PLN02200 adenylate kinase family protein
Probab=99.20 E-value=1.1e-10 Score=99.39 Aligned_cols=124 Identities=18% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
..+.+.+|+|+|++||||||+|+.|++.+ ++.+++.+++++.... . ...+...+.+. +..|
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~---g~~his~gdllR~~i~----------~---~s~~~~~i~~~---~~~G 99 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETF---GFKHLSAGDLLRREIA----------S---NSEHGAMILNT---IKEG 99 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh---CCeEEEccHHHHHHHh----------c---cChhHHHHHHH---HHcC
Confidence 34567899999999999999999999998 5888888776632100 0 00001111111 1112
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCch--HH----hhhcCeEEEEecChhhhhHHhhhccc
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RV----RELMNMKIFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~--~~----~~~~d~~I~l~~~~e~~~~R~~~R~~ 191 (278)
..+.-.........+ ........+|+||.....+. .+ ...+|.+||++++.+++++|+.+|..
T Consensus 100 ~~vp~e~~~~~l~~~-----l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 100 KIVPSEVTVKLIQKE-----MESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred CCCcHHHHHHHHHHH-----HhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 111000000000000 00011235899995332111 11 12468999999999999999998853
No 301
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.20 E-value=1.6e-11 Score=120.30 Aligned_cols=136 Identities=13% Similarity=0.125 Sum_probs=83.8
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C--------------------CEEEE
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q--------------------RVVLV 80 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~--------------------~~~~i 80 (278)
.++||+|++...+.|.......++++|..++|+|+||||||||++.|.+.+.| . .+.++
T Consensus 453 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v 532 (686)
T TIGR03797 453 EVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVV 532 (686)
T ss_pred EEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEE
Confidence 34555555443333334444449999999999999999999999999999875 2 34555
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCCccc----cccCCcCCcCCCCCccccC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~i~~----~~~~~~~~~~~~~~~~~~~ 147 (278)
.+|.+...-+.+++..++ ++ .+.+.+.+.++... .|-.... ..++.+..+|...++..+.
T Consensus 533 ~Q~~~lf~gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 533 LQNGRLMSGSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred ccCCccCcccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 666555444444444432 22 33444444444322 1211111 1234444455555667788
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|++++.+|+.
T Consensus 606 ~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 606 KPRILLFDEATSALDNR 622 (686)
T ss_pred CCCEEEEeCCccCCCHH
Confidence 99999999999998875
No 302
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=2.3e-11 Score=107.14 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=47.2
Q ss_pred ccCCc-eeeeCC------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 10 IEASS-GVHFSG------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
|+..+ +++|++ .+|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 7 l~i~nl~~~~~~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 71 (289)
T PRK13645 7 IILDNVSYTYAKKTPFEFKALNNTSL---------------TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVG 71 (289)
T ss_pred EEEEEEEEEeCCCCccccceeeeeEE---------------EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 45556 888875 27999999 9999999999999999999999999998754 3444443
Q ss_pred C
Q 023731 82 Q 82 (278)
Q Consensus 82 ~ 82 (278)
.
T Consensus 72 g 72 (289)
T PRK13645 72 D 72 (289)
T ss_pred C
Confidence 3
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.20 E-value=3.9e-11 Score=113.48 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=86.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
||+.++ ++.|++ ..|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISF---------------DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence 567777 899987 56999999 9999999999999999999999999998754 34444433221
Q ss_pred ----------------------CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCcc--ccccCCcCCc
Q 023731 86 ----------------------YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAVD--IPNYDFKSYK 137 (278)
Q Consensus 86 ----------------------~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i~--~~~~~~~~~~ 137 (278)
+..++..++..+..... ....++. +...+.++.+....... ...++.+..+
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 147 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPH-KGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQ 147 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhccccc-ccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHH
Confidence 11222222222111000 0000111 23334444443322111 1245555555
Q ss_pred CCCCCccccCCCcEEEEcccccCCchH
Q 023731 138 NNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 138 ~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+...++..+.+++++++|+|++.+|+.
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 148 MVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 655566677899999999999999974
No 304
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.20 E-value=1.3e-11 Score=102.85 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=81.4
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh--C-CCCEEEEcCCCCCCCCC
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--H-DQRVVLVNQDSFYHNLT 90 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l--~-~~~~~~i~~D~~~~~~~ 90 (278)
++.|++ ..++++|| .+.++.+++|.|++|||||||.+.|++.. . ..|-..++..+... ..
T Consensus 7 ~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~-~~ 70 (200)
T cd03217 7 HVSVGGKEILKGVNL---------------TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD-LP 70 (200)
T ss_pred EEEeCCEEeeeccce---------------EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCc-CC
Confidence 778877 56999999 99999999999999999999999999984 2 34556666543321 11
Q ss_pred HHHH-HHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 91 EQEL-ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 91 ~~~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.... .....+.++.+..+..-...+.+... ...++.+..++....+..+.+++++++|+|+..+|+.
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~-------~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 138 (200)
T cd03217 71 PEERARLGIFLAFQYPPEIPGVKNADFLRYV-------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138 (200)
T ss_pred HHHHhhCcEEEeecChhhccCccHHHHHhhc-------cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1111 11123334433222211222222110 0145555556655566677899999999999999864
No 305
>PLN02199 shikimate kinase
Probab=99.20 E-value=1.8e-10 Score=99.95 Aligned_cols=169 Identities=13% Similarity=0.070 Sum_probs=97.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCC-CHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNL-TEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
-++..|.|+|++||||||+++.|++.+ +..+++.|.+.+.. ....... .|.. +-.+.+.+.-.....
T Consensus 100 l~~~~I~LIG~~GSGKSTVgr~LA~~L---g~~fIDtD~lIe~~~~G~sI~e----If~~---~GE~~FR~~E~e~L~-- 167 (303)
T PLN02199 100 LNGRSMYLVGMMGSGKTTVGKLMSKVL---GYTFFDCDTLIEQAMNGTSVAE----IFVH---HGENFFRGKETDALK-- 167 (303)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh---CCCEEehHHHHHHHhcCCCHHH----HHHH---hCHHHHHHHHHHHHH--
Confidence 346789999999999999999999998 58999999876442 1111111 0111 111111111111110
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh--cCeEEEEecChhhhhHHhhhccccccC----CCH
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--MNMKIFVDTDADVRLARRIRRDTVEKG----RDI 198 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~--~d~~I~l~~~~e~~~~R~~~R~~~~~~----~~~ 198 (278)
.......++|-.|......+..+.. ...+|||+++.+...+|+.......++ ...
T Consensus 168 -------------------~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~ 228 (303)
T PLN02199 168 -------------------KLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESG 228 (303)
T ss_pred -------------------HHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCc
Confidence 0111234566677666656654433 368999999999999998751111111 111
Q ss_pred ------HHHHHHHhhccccccccccccccccccEEee------------CCCCcH-HHHHHHHHHHHHhhccCc
Q 023731 199 ------ATVLDQYSKFVKPAFDDFILPTKKYADIIIP------------RGGDNH-VAIDLIVQHIRTKLGQHD 253 (278)
Q Consensus 199 ------~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~------------n~~~~~-~~~~~l~~~I~~~l~~~~ 253 (278)
.+.+.+......|.| .. ||++|+ .++.++ ....++++.+...+....
T Consensus 229 d~~~~~~~~L~~L~~~R~plY-------~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~ 294 (303)
T PLN02199 229 DAYSVAFKRLSAIWDERGEAY-------TN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEE 294 (303)
T ss_pred chhhhHHHHHHHHHHHHHHHH-------Hh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 133444455556665 34 999998 444444 445677777776665433
No 306
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.20 E-value=6.2e-11 Score=102.24 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=44.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
||+..+ ++.|++ ..++++|| .+.+|.+++|+|++|||||||++.|++.+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSL---------------DFYPNEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 567666 889987 57999999 99999999999999999999999999874
No 307
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.20 E-value=3.5e-11 Score=95.44 Aligned_cols=108 Identities=23% Similarity=0.385 Sum_probs=60.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLH--DQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~--~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
+|.+|+|+|.+||||||||+.|.+.|. +..+.++++|.+-+.+. ..-.|+.+.=.+.++.+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~-------------~dl~fs~~dR~e~~rr~~~-- 65 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN-------------ADLGFSKEDREENIRRIAE-- 65 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT-------------TT--SSHHHHHHHHHHHHH--
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC-------------CCCCCCHHHHHHHHHHHHH--
Confidence 578999999999999999999999985 34578888886554331 1112333222233332221
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHHhhhcC----eEEEEecChhhhhHH
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVRELMN----MKIFVDTDADVRLAR 185 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~~~~~d----~~I~l~~~~e~~~~R 185 (278)
.+......+.++|+.....+.+ ...++.+. +.|||++|.+++.+|
T Consensus 66 ----------------~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 66 ----------------VAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp ----------------HHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred ----------------HHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 0012233444455554433311 12333333 899999999999888
No 308
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.19 E-value=4.5e-11 Score=113.63 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=41.8
Q ss_pred CCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 12 ASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 12 ~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
.++ ++.|++ .+|++||| .+.+|.+++|+|+||||||||++.|++.+
T Consensus 3 ~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISF---------------TIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEEEEEECCeEeeeceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 445 788987 56999999 99999999999999999999999999986
No 309
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.19 E-value=9.9e-11 Score=106.50 Aligned_cols=161 Identities=14% Similarity=0.178 Sum_probs=104.8
Q ss_pred hhccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 023731 8 DMIEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------- 74 (278)
Q Consensus 8 ~~~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----------- 74 (278)
..++-.+ +|.|+++ +.++||| .+.++.|.+|.|-+|||||||.+.|.+.+.|
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l---------------~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~ 67 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSL---------------SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE 67 (501)
T ss_pred ceEEEeccEEEcCCEEecCceee---------------eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEE
Confidence 3455556 9999996 5999999 9999999999999999999999999999876
Q ss_pred -----------CCEEEEcCC-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC--CCc----cccccCCcCC
Q 023731 75 -----------QRVVLVNQD-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG--QAV----DIPNYDFKSY 136 (278)
Q Consensus 75 -----------~~~~~i~~D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~--~~i----~~~~~~~~~~ 136 (278)
.|+..+++. .++..++..++..++...- .....+.....+.+..+... -.+ .....+-+..
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~-~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~q 146 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-KGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQ 146 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccc-cccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchh
Confidence 245555554 2335556655555443211 11234555555555544331 111 2234444455
Q ss_pred cCCCCCccccCCCcEEEEcccccCCchH-Hhhhc----------CeEEEEecChhhhhH
Q 023731 137 KNNVFPARRVNPSDVILLEGILVFHDSR-VRELM----------NMKIFVDTDADVRLA 184 (278)
Q Consensus 137 ~~~~~~~~~~~~~~iiiidg~~~~~d~~-~~~~~----------d~~I~l~~~~e~~~~ 184 (278)
++...........+++|+|+|.+.+-|. ..+.| -.+|||..-..+..+
T Consensus 147 QRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 147 QRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 5554444566789999999999987653 22222 367888876665443
No 310
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=4.8e-11 Score=102.97 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=44.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
||+..+ +++|+. ..|+++|| .+.+|.+++|+|++|||||||++.|++.+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDL---------------DFNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred eEEEEeEEEEECCeeEEecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 566667 889987 57999999 99999999999999999999999999975
No 311
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=7.8e-11 Score=102.40 Aligned_cols=50 Identities=10% Similarity=0.179 Sum_probs=45.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
||+.++ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWL---------------DIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred EEEEeeeEEEECCEEEeecceE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 567777 889987 56999999 999999999999999999999999998764
No 312
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.19 E-value=1.6e-11 Score=101.77 Aligned_cols=126 Identities=12% Similarity=0.095 Sum_probs=82.2
Q ss_pred eeeeCC-------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh--CC-CCEEEEcCCC
Q 023731 15 GVHFSG-------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQDS 84 (278)
Q Consensus 15 ~~~~~~-------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l--~~-~~~~~i~~D~ 84 (278)
.++|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+ .+ .|...++..+
T Consensus 10 s~~~~~~~~~~~~~~l~~~~~---------------~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~ 74 (194)
T cd03213 10 TVTVKSSPSKSGKQLLKNVSG---------------KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74 (194)
T ss_pred EEEEecCCCcccccceecceE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe
Confidence 778864 47999999 99999999999999999999999999988 54 3545555433
Q ss_pred CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 85 FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
... ........+.++++..+....+.+.+..... . ..++.+..++....+..+.+++++++|+|+..+|+.
T Consensus 75 ~~~----~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---~--~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 75 LDK----RSFRKIIGYVPQDDILHPTLTVRETLMFAAK---L--RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred Cch----HhhhheEEEccCcccCCCCCcHHHHHHHHHH---h--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 221 1111222344544433332223333321110 0 145555555655566777899999999999999864
No 313
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.19 E-value=1.2e-11 Score=104.99 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=50.5
Q ss_pred hhhhccCCc-eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEE
Q 023731 6 VVDMIEASS-GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVL 79 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~ 79 (278)
...||+.++ .+.|++ .+|+++|| .+.++.+++|+|++|||||||++.|++.+++ .|...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 72 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSF---------------TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL 72 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 445677777 889974 47999999 9999999999999999999999999998754 34344
Q ss_pred EcC
Q 023731 80 VNQ 82 (278)
Q Consensus 80 i~~ 82 (278)
++.
T Consensus 73 ~~g 75 (226)
T cd03248 73 LDG 75 (226)
T ss_pred ECC
Confidence 433
No 314
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.5e-11 Score=102.61 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=45.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+|+.++ ++.|++ ..|++++| ++.+|.+++|.|++|||||||++.|++.+.
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl---------------~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISM---------------DIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred eEEEEEEEEEECCeEeecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 466666 889987 57999999 999999999999999999999999999876
No 315
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=5.8e-11 Score=103.61 Aligned_cols=50 Identities=10% Similarity=0.263 Sum_probs=45.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.
T Consensus 24 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 24 VFDTQNLNLWYGEDHALKNINL---------------DIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEEEeeeEEEECCcceeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 566667 888976 57999999 999999999999999999999999999874
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.19 E-value=2.3e-11 Score=117.24 Aligned_cols=115 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------------------CEEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------------------~~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
..++|..|+|+|+||||||||++.|.+.++|. .+.++++|.+...-+.+++..++
T Consensus 357 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~---- 432 (588)
T PRK13657 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG---- 432 (588)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcC----
Confidence 99999999999999999999999999998752 34556666555444555544432
Q ss_pred CCCCcccHHHHHHH---------HHHhhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~---------l~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+++ .+.+.+.+. +..+..|-.... ..++.+..+|...++..+.+++++++|+|.+.+|+.
T Consensus 433 -~~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 433 -RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred -CCC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 221 122222222 222222222111 234555556666667778899999999999999874
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.18 E-value=6.4e-11 Score=110.13 Aligned_cols=127 Identities=16% Similarity=0.238 Sum_probs=86.3
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCH---HHHHHc
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTE---QELARV 97 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~---~~~~~~ 97 (278)
+++|||| .+.+|.++||+|.|||||||+++.|++.+.| .|...+++.++- ++. ......
T Consensus 306 Av~~VSf---------------~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~--~~~~~~~~~r~~ 368 (539)
T COG1123 306 AVDDVSF---------------DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD--LTGGELRRLRRR 368 (539)
T ss_pred eeeeeee---------------EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc--cccchhhhhhhh
Confidence 4999999 9999999999999999999999999999976 445666665522 221 122233
Q ss_pred cccCCCCCCc-cc--------------------H----HHHHHHHHHhhcCCCc--ccc-ccCCcCCcCCCCCccccCCC
Q 023731 98 HEYNFDHPDA-FD--------------------T----EKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPS 149 (278)
Q Consensus 98 ~~~~~~~~~~-~d--------------------~----~~~~~~l~~~~~~~~i--~~~-~~~~~~~~~~~~~~~~~~~~ 149 (278)
..+.|++|.. ++ . +...+.++....+... .+| .++.+..+|...++.....+
T Consensus 369 ~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P 448 (539)
T COG1123 369 IQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEP 448 (539)
T ss_pred eEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCC
Confidence 4556666532 11 0 1233334443333321 334 66777777777777788999
Q ss_pred cEEEEcccccCCchHH
Q 023731 150 DVILLEGILVFHDSRV 165 (278)
Q Consensus 150 ~iiiidg~~~~~d~~~ 165 (278)
+++|.|++.+.+|+..
T Consensus 449 ~lli~DEp~SaLDvsv 464 (539)
T COG1123 449 KLLILDEPVSALDVSV 464 (539)
T ss_pred CEEEecCCccccCHHH
Confidence 9999999999999743
No 318
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.18 E-value=2.2e-10 Score=95.52 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
++++|+|.|++||||||+++.|++.+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999998853
No 319
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.2e-11 Score=112.99 Aligned_cols=129 Identities=16% Similarity=0.276 Sum_probs=82.7
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C----------------
Q 023731 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q---------------- 75 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~---------------- 75 (278)
.+.|++ ..++|+|| +.+++..++|+|+|||||||+.+.|++.+.+ .
T Consensus 327 ~~~y~~g~~~l~~l~~---------------t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~ 391 (559)
T COG4988 327 SFRYPDGKPALSDLNL---------------TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE 391 (559)
T ss_pred EEecCCCCcccCCcee---------------EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHH
Confidence 667766 56888888 9999999999999999999999999999874 1
Q ss_pred ----CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcccc------------ccCCcCCcCC
Q 023731 76 ----RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIP------------NYDFKSYKNN 139 (278)
Q Consensus 76 ----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~------------~~~~~~~~~~ 139 (278)
.+..++++++...-+.+++..+++ +. -..+.+.+.++.....+.+..| ..+.+..+|+
T Consensus 392 ~~~k~i~~v~Q~p~lf~gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl 465 (559)
T COG4988 392 AWRKQISWVSQNPYLFAGTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465 (559)
T ss_pred HHHhHeeeeCCCCccccccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence 245555555554444545444332 22 2223344444332222222111 2233333454
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++..+.+++++++|+|.+.+|.+
T Consensus 466 aLARAll~~~~l~llDEpTA~LD~e 490 (559)
T COG4988 466 ALARALLSPASLLLLDEPTAHLDAE 490 (559)
T ss_pred HHHHHhcCCCCEEEecCCccCCCHh
Confidence 5556677889999999999998764
No 320
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=1.9e-11 Score=104.22 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=44.2
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
++.|++ ..++++|| ...++.+++|+|++|||||||++.|++.+++ .|...++.
T Consensus 7 ~~~~~~~~~~~l~~i~~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (234)
T cd03251 7 TFRYPGDGPPVLRDISL---------------DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDG 63 (234)
T ss_pred EEEeCCCCccceeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECC
Confidence 778865 57999999 9999999999999999999999999999764 34344433
No 321
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=8e-11 Score=102.17 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=81.7
Q ss_pred ccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEEc
Q 023731 10 IEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVVLVN 81 (278)
Q Consensus 10 ~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~~i~ 81 (278)
+.+.+ .++|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+.+ .|-..++
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHV---------------PIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 33444 888988 46999999 9999999999999999999999999998753 4445554
Q ss_pred CCCCCC-CCCHHHHHHccccCCCCCCccc--------------------HHHHHHHHHHhhcCCCc------cccccCCc
Q 023731 82 QDSFYH-NLTEQELARVHEYNFDHPDAFD--------------------TEKLLSSMEKLRHGQAV------DIPNYDFK 134 (278)
Q Consensus 82 ~D~~~~-~~~~~~~~~~~~~~~~~~~~~d--------------------~~~~~~~l~~~~~~~~i------~~~~~~~~ 134 (278)
..+... ............+.++++..+. .+...+.++.+.....+ ....++.+
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 153 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG 153 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 433221 0111111111122222221111 01122223222211111 01133444
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..++....+..+.+++++++|+|+..+|+..
T Consensus 154 ~~qrv~laral~~~p~llllDEPtsgLD~~~ 184 (261)
T PRK14263 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIA 184 (261)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHH
Confidence 4445444556678999999999999998753
No 322
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.18 E-value=3.2e-11 Score=103.72 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=48.1
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh--CC-CCEEEEcC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL--HD-QRVVLVNQ 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l--~~-~~~~~i~~ 82 (278)
||+..+ +++|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+ .+ .|-..++.
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g 64 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNL---------------EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64 (248)
T ss_pred CeEEEEEEEEeCCeeeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECC
Confidence 455566 889987 57999999 99999999999999999999999999984 22 34444544
No 323
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.18 E-value=2.4e-11 Score=116.66 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=84.7
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------------------~~~i~ 81 (278)
++||+|++..++.|-.......+++|..|+|+|+||||||||++.|.+.+.+. | +.+++
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~ 412 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEc
Confidence 44555544333333333333399999999999999999999999999998652 2 45556
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+..+-+.+++..+ .++..++.+.+.+.++... .|-...+ ..++.+..+|...++..+.+
T Consensus 413 Q~~~lf~~Ti~~Ni~~-----~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~ 487 (571)
T TIGR02203 413 QDVVLFNDTIANNIAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD 487 (571)
T ss_pred cCcccccccHHHHHhc-----CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 6665544444444332 2222344455555444322 2211111 12444445555566677889
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|.+.+|+.
T Consensus 488 ~~illLDEpts~LD~~ 503 (571)
T TIGR02203 488 APILILDEATSALDNE 503 (571)
T ss_pred CCEEEEeCccccCCHH
Confidence 9999999999998875
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.4e-11 Score=111.99 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=90.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C---------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------- 76 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+. |
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~ 383 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNL---------------LLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENAN 383 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceE
Confidence 567777 888987 56999999 99999999999999999999999999987541 2
Q ss_pred EEEEcCCC---CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC-CC--ccccccCCcCCcCCCCCccccCCCc
Q 023731 77 VVLVNQDS---FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-QA--VDIPNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 77 ~~~i~~D~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~-~~--i~~~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
+.++.++. ++..++..++... +... ..+.+...+.+..+... .. .....++.+..++...++..+.+++
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~----~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 458 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQ----WRQE-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHH----hccC-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCC
Confidence 34555543 2233444432221 1111 11233445555555332 11 1223555566666666667778999
Q ss_pred EEEEcccccCCchHH
Q 023731 151 VILLEGILVFHDSRV 165 (278)
Q Consensus 151 iiiidg~~~~~d~~~ 165 (278)
++++|+|++.+|+..
T Consensus 459 lllLDEPt~~LD~~~ 473 (530)
T PRK15064 459 VLVMDEPTNHMDMES 473 (530)
T ss_pred EEEEcCCCCCCCHHH
Confidence 999999999998753
No 325
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.17 E-value=8.8e-11 Score=112.43 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=91.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C---------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------- 76 (278)
|++.++ +++|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.+.+. |
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~ 388 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSF---------------SLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVK 388 (556)
T ss_pred EEEEEeEEEEECCeeeecceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceE
Confidence 566667 888987 57999999 99999999999999999999999999987531 2
Q ss_pred EEEEcCCC--CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC---CccccccCCcCCcCCCCCccccCCCcE
Q 023731 77 VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ---AVDIPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 77 ~~~i~~D~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
+.++.++. ++..++..++..+....... . .........+..+.... .-....++.+..+++..++..+.++++
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 466 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKV-G-NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV 466 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccc-c-ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 34555552 44445555544332111110 0 11112234444443321 112235555666666666667789999
Q ss_pred EEEcccccCCchHHh
Q 023731 152 ILLEGILVFHDSRVR 166 (278)
Q Consensus 152 iiidg~~~~~d~~~~ 166 (278)
+++|+|++.+|+...
T Consensus 467 llLDEPt~~LD~~~~ 481 (556)
T PRK11819 467 LLLDEPTNDLDVETL 481 (556)
T ss_pred EEEcCCCCCCCHHHH
Confidence 999999999987533
No 326
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.4e-11 Score=111.00 Aligned_cols=134 Identities=9% Similarity=0.119 Sum_probs=81.9
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC-------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF------- 85 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~------- 85 (278)
++.|++ .+|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++..++
T Consensus 5 ~~~~~~~~il~~vs~---------------~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 69 (491)
T PRK10982 5 SKSFPGVKALDNVNL---------------KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKE 69 (491)
T ss_pred EEEeCCEEeeeeeeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHH
Confidence 788987 46999999 9999999999999999999999999998754 33333333221
Q ss_pred ---------------CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCcc--ccccCCcCCcCCCCCcc
Q 023731 86 ---------------YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAVD--IPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 86 ---------------~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~ 144 (278)
+..++..++..+..+.+.. ...+. +...+.++.+....... ...++.+..+++..++.
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~a 148 (491)
T PRK10982 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKG-MFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKA 148 (491)
T ss_pred HHhCCEEEEecccccccCCCHHHHhhcccccccc-cccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHH
Confidence 1122222222211110000 00111 12333444433322111 12455555566656666
Q ss_pred ccCCCcEEEEcccccCCchH
Q 023731 145 RVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.+++++++|+|++.+|+.
T Consensus 149 l~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 149 FSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred HHhCCCEEEEeCCCCCCCHH
Confidence 77899999999999999974
No 327
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.17 E-value=3.7e-10 Score=92.83 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=41.6
Q ss_pred CCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 023731 34 GQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (278)
Q Consensus 34 ~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~--~~~i~~D~~~ 86 (278)
..+....+....+++.+|+|+|++||||||+++.|++.+...+ ..+++.|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 4 AITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred cCCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3555566666778899999999999999999999999985333 5677777644
No 328
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.17 E-value=5.2e-11 Score=99.72 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=78.8
Q ss_pred ccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE----
Q 023731 10 IEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV---- 80 (278)
Q Consensus 10 ~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i---- 80 (278)
|+..+ .++|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...+
T Consensus 7 l~~~~l~~~~~~~~~~~l~~isl---------------~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~ 71 (207)
T cd03369 7 IEVENLSVRYAPDLPPVLKNVSF---------------KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID 71 (207)
T ss_pred EEEEEEEEEeCCCCcccccCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence 44445 788874 47999999 9999999999999999999999999998753 233333
Q ss_pred ----------------cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCcc
Q 023731 81 ----------------NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 81 ----------------~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 144 (278)
.++..+...+..++..+ +. .+..+.+.+.++ .. .....++.+..++....+.
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~~----~~---~~~~~~~~~~l~---~~--~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 72 ISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP----FD---EYSDEEIYGALR---VS--EGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred hHHCCHHHHHhhEEEEecCCcccCccHHHHhcc----cC---CCCHHHHHHHhh---cc--CCCCcCCHHHHHHHHHHHH
Confidence 33322211122111110 10 112222333332 11 1112444455555555566
Q ss_pred ccCCCcEEEEcccccCCchH
Q 023731 145 RVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.+++++++|+|...+|+.
T Consensus 140 l~~~p~llllDEP~~~LD~~ 159 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYA 159 (207)
T ss_pred HhhCCCEEEEeCCcccCCHH
Confidence 67899999999999999875
No 329
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.17 E-value=2.3e-11 Score=101.73 Aligned_cols=167 Identities=17% Similarity=0.091 Sum_probs=101.6
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcC
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ 82 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~ 82 (278)
+.-+|+=.+ .+.|+| .+|+||+. ++.++.-.+|.|++|||||||++.+++...+. +...+-+
T Consensus 28 ~~~li~l~~v~v~r~gk~iL~~isW---------------~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G 92 (257)
T COG1119 28 NEPLIELKNVSVRRNGKKILGDLSW---------------QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG 92 (257)
T ss_pred CcceEEecceEEEECCEeeccccce---------------eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeee
Confidence 333566666 899999 56999999 99999999999999999999999999988652 2222222
Q ss_pred CCCCCCCCHHHHHHcccc----------------------CCC-------CCCcccHHHHHHHHHHhhcCCCc--ccccc
Q 023731 83 DSFYHNLTEQELARVHEY----------------------NFD-------HPDAFDTEKLLSSMEKLRHGQAV--DIPNY 131 (278)
Q Consensus 83 D~~~~~~~~~~~~~~~~~----------------------~~~-------~~~~~d~~~~~~~l~~~~~~~~i--~~~~~ 131 (278)
..|-+.-...+.+....+ .|. ....-+.+.....++.+...... .+...
T Consensus 93 ~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~L 172 (257)
T COG1119 93 RRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSL 172 (257)
T ss_pred eeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhc
Confidence 222211111111100000 111 11122233333444444433322 22355
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCCchHHhh--------hc-----CeEEEEecChhhhhHHhh
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRE--------LM-----NMKIFVDTDADVRLARRI 187 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~--------~~-----d~~I~l~~~~e~~~~R~~ 187 (278)
+.+..++...++..+..|.++|+|+|+.++|...+. .. -..+||....+.....+-
T Consensus 173 S~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred CHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccc
Confidence 556666666677888999999999999999864331 11 247788877776554443
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.17 E-value=8.9e-11 Score=112.32 Aligned_cols=140 Identities=17% Similarity=0.116 Sum_probs=92.4
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------- 76 (278)
|++..+ ++.|++ ..|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~ 386 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSF---------------KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVK 386 (552)
T ss_pred EEEEeeEEEEECCeeeeccceE---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceE
Confidence 577777 888987 57999999 9999999999999999999999999998754 12
Q ss_pred EEEEcCCC--CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC-Cc--cccccCCcCCcCCCCCccccCCCcE
Q 023731 77 VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 77 ~~~i~~D~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~i--~~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
+.++.++. ++..++..++..+....+.. .. ......+.+..+.... .. ....++.+..+++..++..+.++++
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQL-GK-REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhcccccc-Cc-chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 45556652 44445555544332111110 00 1112334455443321 11 2235566666666666677889999
Q ss_pred EEEcccccCCchHH
Q 023731 152 ILLEGILVFHDSRV 165 (278)
Q Consensus 152 iiidg~~~~~d~~~ 165 (278)
+++|+|++.+|+..
T Consensus 465 llLDEPt~~LD~~~ 478 (552)
T TIGR03719 465 LLLDEPTNDLDVET 478 (552)
T ss_pred EEEeCCCCCCCHHH
Confidence 99999999998743
No 331
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.2e-10 Score=100.45 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=44.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
+|+.++ ++.|++ ..|+++|| .+.++.+++|.|++|||||||++.|++.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNL---------------DIPKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 566666 888986 67999999 99999999999999999999999999875
No 332
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.2e-11 Score=105.44 Aligned_cols=140 Identities=11% Similarity=0.213 Sum_probs=85.5
Q ss_pred hccCCc-eeee----CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----CCE
Q 023731 9 MIEASS-GVHF----SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-----QRV 77 (278)
Q Consensus 9 ~~~~~~-~~~~----~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-----~~~ 77 (278)
||+..+ ++.| +. .+|++||| .+.+|.+++|.|+||||||||++.|++.+.+ .|.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl---------------~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~ 67 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSM---------------TLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADR 67 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceE
Confidence 566666 8899 33 47999999 9999999999999999999999999998752 244
Q ss_pred EEEcCCCCCCCCCHHHHHH----ccccCCCCCCc-cc-----------------------------HHHHHHHHHHhhcC
Q 023731 78 VLVNQDSFYHNLTEQELAR----VHEYNFDHPDA-FD-----------------------------TEKLLSSMEKLRHG 123 (278)
Q Consensus 78 ~~i~~D~~~~~~~~~~~~~----~~~~~~~~~~~-~d-----------------------------~~~~~~~l~~~~~~ 123 (278)
..++..+... +....... ...+.|+++.. ++ .+...+.++.+...
T Consensus 68 i~~~g~~i~~-~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~ 146 (330)
T PRK15093 68 MRFDDIDLLR-LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIK 146 (330)
T ss_pred EEECCEECCc-CCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCC
Confidence 4444432221 12111111 12233333321 10 11222333333222
Q ss_pred CC----cccc-ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 124 QA----VDIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 124 ~~----i~~~-~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.. -.+| .++.+..+++..++..+.+++++|+|+|++.+|+.
T Consensus 147 ~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~ 192 (330)
T PRK15093 147 DHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPT 192 (330)
T ss_pred ChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHH
Confidence 10 0112 45555556666666777899999999999999974
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.16 E-value=9e-11 Score=114.00 Aligned_cols=156 Identities=14% Similarity=0.183 Sum_probs=98.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------- 76 (278)
||+..+ ++.|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ 383 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSA---------------QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLE 383 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcE
Confidence 577777 899988 56999999 9999999999999999999999999998754 22
Q ss_pred EEEEcCC--CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC-CCc--cccccCCcCCcCCCCCccccCCCcE
Q 023731 77 VVLVNQD--SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG-QAV--DIPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 77 ~~~i~~D--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~-~~i--~~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
+.++.++ .++..++..++.......+. ... ......+.+..+... ... ....++.+..+++..++..+.++++
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~-~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l 461 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVM-VNG-RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL 461 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhccccc-ccc-hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3444443 23334444443332111110 000 022334444444332 111 2235555666666666667789999
Q ss_pred EEEcccccCCchHHhhhc--------CeEEEEecChhh
Q 023731 152 ILLEGILVFHDSRVRELM--------NMKIFVDTDADV 181 (278)
Q Consensus 152 iiidg~~~~~d~~~~~~~--------d~~I~l~~~~e~ 181 (278)
+++|+|+..+|......+ ..+|++..+.+.
T Consensus 462 LlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~ 499 (635)
T PRK11147 462 LILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQF 499 (635)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 999999999997433221 356777766554
No 334
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.1e-11 Score=115.44 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=80.8
Q ss_pred ccceeeecccCCC-CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------------EEEE
Q 023731 23 MDGLEVRNKETGQ-PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLV 80 (278)
Q Consensus 23 l~~i~~~~~~~~~-~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------------------~~~i 80 (278)
+.||+|.|.+|.- |--..--.++++|++++++|||||||||++..|.+.+.|. | +.++
T Consensus 468 F~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V 547 (716)
T KOG0058|consen 468 FEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLV 547 (716)
T ss_pred EEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeee
Confidence 5555555555532 4444444499999999999999999999999999999862 2 3444
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH---------HHHHHhhcCCCccc----cccCCcCCcCCCCCccccC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL---------SSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~l~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~ 147 (278)
.+++....-+..++..++.. ..+.+.+. +.+..+.+|=.... ...+.+..+|.+.++..+.
T Consensus 548 ~QEPvLFs~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 548 GQEPVLFSGSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred eccceeecccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 44444433344444443222 12222222 22333333211110 1334444455556677789
Q ss_pred CCcEEEEcccccCCch
Q 023731 148 PSDVILLEGILVFHDS 163 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~ 163 (278)
+|.++|+|+..+.+|.
T Consensus 622 ~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 622 NPRVLILDEATSALDA 637 (716)
T ss_pred CCCEEEEechhhhcch
Confidence 9999999999998754
No 335
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=8.5e-11 Score=103.35 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=43.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l 72 (278)
+|+..+ ++.|++ ..|+|+|| .+.+|.+++|+|++|||||||++.|++.+
T Consensus 39 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 39 HVVAKNFSIYYGEFEAVKKVNA---------------DILSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred EEEEeeeEEEECCEEEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 466666 888987 46999999 99999999999999999999999999964
No 336
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=2.8e-11 Score=102.89 Aligned_cols=56 Identities=11% Similarity=0.280 Sum_probs=45.7
Q ss_pred CCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 12 ASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 12 ~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
..+ ++.|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++.
T Consensus 5 ~~~l~~~~~~~~~~l~~isl---------------~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINF---------------SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDG 64 (229)
T ss_pred EEEEEEecCCCCccccceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 344 788864 57999999 9999999999999999999999999998864 34444443
No 337
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.16 E-value=1.8e-09 Score=86.88 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 51 I~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
|+|+|++||||||+++.|++.+ +..+++.|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l---~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL---GAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc---CCeEEeCccccC
Confidence 5789999999999999999998 478889999864
No 338
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.16 E-value=3e-11 Score=115.09 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=83.9
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------------------CEEEE
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLV 80 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------------------~~~~i 80 (278)
.++||+|++.+..+|.......++++|..++|+|+||||||||++.|.+.+++. .+.++
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v 401 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEE
Confidence 355555554433333344444499999999999999999999999999988752 24555
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~ 147 (278)
.+|.+..+.+.+++..++... ...+.+.+.++. +..|-.... ..++.+..+|...++..+.
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~~~------~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLARPD------ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred cCCCcccCcCHHHHHhccCCC------CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 666655445555554432211 122333333332 222211111 1344445555555667788
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++++|+|.+.+|+.
T Consensus 476 ~~~ililDE~ts~lD~~ 492 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAE 492 (529)
T ss_pred CCCEEEEeCcccccCHH
Confidence 99999999999998875
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.16 E-value=1e-10 Score=111.98 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=96.5
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--------
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR-------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~-------- 76 (278)
||+..+ ++.|+ + ..|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~---------------~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~ 70 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISL---------------SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGI 70 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC
Confidence 688888 99998 5 57999999 9999999999999999999999999998754 22
Q ss_pred -EEEEcCCCC-CCCCCHHHHHHcccc--------------CCCCCC---------------------ccc-HHHHHHHHH
Q 023731 77 -VVLVNQDSF-YHNLTEQELARVHEY--------------NFDHPD---------------------AFD-TEKLLSSME 118 (278)
Q Consensus 77 -~~~i~~D~~-~~~~~~~~~~~~~~~--------------~~~~~~---------------------~~d-~~~~~~~l~ 118 (278)
+.++.++.. +..++..++..++.. .+..+. .++ ...+.+.+.
T Consensus 71 ~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 150 (556)
T PRK11819 71 KVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMD 150 (556)
T ss_pred EEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 345556532 233454444322100 001000 011 112222333
Q ss_pred HhhcCC-CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh--------cCeEEEEecChhh
Q 023731 119 KLRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL--------MNMKIFVDTDADV 181 (278)
Q Consensus 119 ~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~--------~d~~I~l~~~~e~ 181 (278)
.+.... ......++.+..+++..++..+.+++++++|+|++.+|+..... ...+|++..+.+.
T Consensus 151 ~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~ 222 (556)
T PRK11819 151 ALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYF 222 (556)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 322211 11122455555556555566778999999999999999743321 1345566655543
No 340
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.16 E-value=1.8e-11 Score=120.26 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=75.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------------------CEEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------------------~~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..++|+|+|||||||+++.|.+.+++. .+.++++|.+...-+.+++..++...
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~- 581 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD- 581 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC-
Confidence 99999999999999999999999999998752 34566667666555666655543211
Q ss_pred CCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.+.+.+.++. +..|-.... ..++.+..+|...++..+.+++++++|++++.+|++
T Consensus 582 -----~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 582 -----TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred -----CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 223334443332 222211111 133444445555566677899999999999998764
No 341
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.16 E-value=8.5e-11 Score=101.46 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
||+..+ ++.|++ ..|++||| .+.++.+++|.|++|||||||++.|++.+++ .|...++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSF---------------DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM 64 (253)
T ss_pred eEEEeeeEEEeCCceEeecceE---------------EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence 566667 889976 57999999 9999999999999999999999999998754 34455443
No 342
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.16 E-value=8.8e-11 Score=111.37 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=84.0
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC--
Q 023731 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS-- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~-- 84 (278)
||+..+ ++.|+. .|++||| .+.+|.+++|+|++|||||||++.|++.+++ .|...++..+
T Consensus 265 ~l~~~~l~~~~~~-~l~~isl---------------~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 265 VFEVRNVTSRDRK-KVRDISF---------------SVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS 328 (510)
T ss_pred EEEEeCccccCCC-cccceeE---------------EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence 566655 655554 7999999 9999999999999999999999999998754 2333333221
Q ss_pred -----------------------CCCCCCHHHHHHccccCCC--CC---Cccc----HHHHHHHHHHhhcC-CCccc--c
Q 023731 85 -----------------------FYHNLTEQELARVHEYNFD--HP---DAFD----TEKLLSSMEKLRHG-QAVDI--P 129 (278)
Q Consensus 85 -----------------------~~~~~~~~~~~~~~~~~~~--~~---~~~d----~~~~~~~l~~~~~~-~~i~~--~ 129 (278)
++..++..++..+...... .. ..+. .....+.++.+... ..... .
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 2222233322221110000 00 0001 11233445554432 22222 2
Q ss_pred ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 130 NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++.+..+++..++..+.+++++++|+|++.+|+.
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~ 443 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHH
Confidence 55555666666666677899999999999999874
No 343
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.16 E-value=2.9e-11 Score=118.99 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=84.3
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------------------CEEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------------------RVVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------------------~~~~i~ 81 (278)
++||+|++...+.|.......++++|..|+|+|+||||||||++.|++.+.|. .+.++.
T Consensus 480 ~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 559 (710)
T TIGR03796 480 LRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559 (710)
T ss_pred EEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEe
Confidence 45555554443334344444499999999999999999999999999998652 245666
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+...-+.+++..++ ++ ..+.+.+.+.++... .|-...+ ..++.+..+|...++..+.+
T Consensus 560 Q~~~lf~gTi~eNi~l~-----~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 560 QDIFLFEGTVRDNLTLW-----DP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred cCChhhhccHHHHhhCC-----CC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 66665444555544432 22 233444444444322 1211111 12344444555556677889
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|++++.+|+.
T Consensus 634 p~iliLDEptS~LD~~ 649 (710)
T TIGR03796 634 PSILILDEATSALDPE 649 (710)
T ss_pred CCEEEEECccccCCHH
Confidence 9999999999998874
No 344
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.16 E-value=3.8e-11 Score=104.79 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=81.9
Q ss_pred CCc-eeeeC--C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 12 ASS-GVHFS--G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 12 ~~~-~~~~~--~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
..+ +++|. + ..|++||| .+.++.+++|+|++|||||||++.|++.+...|...++..+...
T Consensus 5 ~~nls~~~~~~~~~~l~~isl---------------~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~ 69 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISF---------------SISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNS 69 (275)
T ss_pred EEEEEEEeCCCCCcceeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhh
Confidence 344 78883 3 57999999 99999999999999999999999999998655555555432210
Q ss_pred CCCHHHHHHccccCCCCCC--------------cccHHHHHHHHHHhhcCCCc-ccc------------ccCCcCCcCCC
Q 023731 88 NLTEQELARVHEYNFDHPD--------------AFDTEKLLSSMEKLRHGQAV-DIP------------NYDFKSYKNNV 140 (278)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~--------------~~d~~~~~~~l~~~~~~~~i-~~~------------~~~~~~~~~~~ 140 (278)
...........+.++++. .+..+.+.+.++.+.....+ ..| .++.+..++..
T Consensus 70 -~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~ 148 (275)
T cd03289 70 -VPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMC 148 (275)
T ss_pred -CCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 111111111112222211 12223333333332221111 111 14444444555
Q ss_pred CCccccCCCcEEEEcccccCCchH
Q 023731 141 FPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+..+.+++++++|+|.+.+|+.
T Consensus 149 LaRall~~p~illlDEpts~LD~~ 172 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPI 172 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHH
Confidence 556677899999999999999874
No 345
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.15 E-value=7.5e-11 Score=105.62 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=96.2
Q ss_pred hhccCCc-eeeeC---C--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCE
Q 023731 8 DMIEASS-GVHFS---G--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRV 77 (278)
Q Consensus 8 ~~~~~~~-~~~~~---~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----~~~ 77 (278)
.+|+.++ ++.|+ + .+|+|||| .+.+|.+++|.|+||||||||++.|++.+.+ .|-
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~ 75 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNF---------------SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS 75 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEE---------------EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeE
Confidence 3677777 89994 2 36999999 9999999999999999999999999999875 455
Q ss_pred EEEcCCCCCCCCCHHHHHH----ccccCCCCCC-cc--------------------cH----HHHHHHHHHhhcCCC--c
Q 023731 78 VLVNQDSFYHNLTEQELAR----VHEYNFDHPD-AF--------------------DT----EKLLSSMEKLRHGQA--V 126 (278)
Q Consensus 78 ~~i~~D~~~~~~~~~~~~~----~~~~~~~~~~-~~--------------------d~----~~~~~~l~~~~~~~~--i 126 (278)
..++..+... ++...... ...+.|+++. .+ .. +...+.++.+..... .
T Consensus 76 I~~~G~~i~~-~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~ 154 (330)
T PRK09473 76 ATFNGREILN-LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR 154 (330)
T ss_pred EEECCEECCc-CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHH
Confidence 6665544321 22222211 1233444431 11 00 111222222211110 0
Q ss_pred --ccc-ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhh
Q 023731 127 --DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVR 182 (278)
Q Consensus 127 --~~~-~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~ 182 (278)
.+| .++.+..++...++..+.+++++|+|+|+..+|...... .. ..||+..+....
T Consensus 155 ~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~ 225 (330)
T PRK09473 155 MKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV 225 (330)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 112 344455556555566778999999999999999643311 12 466666666543
No 346
>PRK13409 putative ATPase RIL; Provisional
Probab=99.15 E-value=8.7e-11 Score=112.75 Aligned_cols=136 Identities=15% Similarity=0.132 Sum_probs=88.7
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C-------EEE
Q 023731 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------VVL 79 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~-------~~~ 79 (278)
|++..+ ++.|+++.|+++++ .+.++.+++|.|++|||||||++.|++.+.+. | +.+
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~---------------~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGG---------------EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY 404 (590)
T ss_pred EEEEcceEEEECCEEEEecce---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEE
Confidence 566666 78888877999999 99999999999999999999999999987642 2 234
Q ss_pred EcCCCC-CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEcc
Q 023731 80 VNQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEG 156 (278)
Q Consensus 80 i~~D~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg 156 (278)
+.++.. ....+..++..+....+. ......+.+..+...... ....++.+..+++..++..+.+++++++|+
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444422 223344443322111111 011223444444332211 223566666666666677788999999999
Q ss_pred cccCCchH
Q 023731 157 ILVFHDSR 164 (278)
Q Consensus 157 ~~~~~d~~ 164 (278)
|.+++|..
T Consensus 480 Pt~~LD~~ 487 (590)
T PRK13409 480 PSAHLDVE 487 (590)
T ss_pred CccCCCHH
Confidence 99999874
No 347
>PRK14530 adenylate kinase; Provisional
Probab=99.15 E-value=3.1e-10 Score=95.65 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
+..|+|+|++||||||+++.|++.+ ++.+++.+++++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~---~~~~i~~g~~lr 39 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF---GVEHVTTGDALR 39 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh---CCeEEeccHHHH
Confidence 3479999999999999999999998 588888877663
No 348
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=3.8e-11 Score=100.23 Aligned_cols=134 Identities=10% Similarity=0.030 Sum_probs=80.6
Q ss_pred eeeeC----C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEcCCCC
Q 023731 15 GVHFS----G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRVVLVNQDSF 85 (278)
Q Consensus 15 ~~~~~----~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----~~~~~i~~D~~ 85 (278)
+++|+ + ..|++++| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 10 ~~~~~~~~~~~~il~~~s~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~ 74 (202)
T cd03233 10 SFTTGKGRSKIPILKDFSG---------------VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74 (202)
T ss_pred EEEeccCCCCceeeeeEEE---------------EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEEC
Confidence 56664 3 46999999 9999999999999999999999999999862 45455544322
Q ss_pred CCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc-CCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 86 YHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH-GQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.. .. ........+.++.+..+...-+.+.+..... ........++.+..++....+..+.+++++++|+|.+.+|+.
T Consensus 75 ~~-~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 75 KE-FA-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 (202)
T ss_pred cc-ch-hhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHH
Confidence 11 11 1111112333443333322122233221110 011111244555555555556677889999999999999875
Q ss_pred H
Q 023731 165 V 165 (278)
Q Consensus 165 ~ 165 (278)
.
T Consensus 153 ~ 153 (202)
T cd03233 153 T 153 (202)
T ss_pred H
Confidence 3
No 349
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=8.5e-11 Score=111.98 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=87.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV-------- 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~-------- 77 (278)
||+.++ ++.|++ .+|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl---------------~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~ 65 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISV---------------KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNER 65 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE
Confidence 456666 889987 57999999 9999999999999999999999999998754 232
Q ss_pred -EEEcCCC-CCCCCCHHHHHHccc-----------cCCCCCC--------------------ccc-HHHHHHHHHHhhcC
Q 023731 78 -VLVNQDS-FYHNLTEQELARVHE-----------YNFDHPD--------------------AFD-TEKLLSSMEKLRHG 123 (278)
Q Consensus 78 -~~i~~D~-~~~~~~~~~~~~~~~-----------~~~~~~~--------------------~~d-~~~~~~~l~~~~~~ 123 (278)
.++.++. ++..++..++..++. ..+..+. .++ ...+.+.+..+...
T Consensus 66 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 145 (530)
T PRK15064 66 LGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145 (530)
T ss_pred EEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 3333432 223334333222110 0000000 001 12233444444332
Q ss_pred CCc---cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh
Q 023731 124 QAV---DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 124 ~~i---~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
... ....++.+..+++..++..+.+++++++|+|++.+|+...
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~ 191 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI 191 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHH
Confidence 111 1234555556666666667789999999999999997433
No 350
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.15 E-value=6.6e-11 Score=113.74 Aligned_cols=115 Identities=12% Similarity=0.146 Sum_probs=73.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------------------~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..++|+|+||||||||++.|++.+++. | +.++.+|.+...-+..++..++.
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~--- 438 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA--- 438 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC---
Confidence 99999999999999999999999999998652 2 34555555554444444433221
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCccc------------cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSSMEKLRHGQAVDI------------PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~~~~~~~i~~------------~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+ ..+.+.+.+.++.....+.+.. ..++.+..+|...++..+.+++++++|++++.+|+.
T Consensus 439 --~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 439 --P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred --C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 2 1233444444444332221111 123334444555556677899999999999998875
No 351
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.15 E-value=2.3e-12 Score=104.47 Aligned_cols=140 Identities=17% Similarity=0.176 Sum_probs=86.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C----------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q---------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~---------- 75 (278)
++.+.+ .|.|++ ..+++||| .++++.+||+.||+||||||.=.++.+...+ .
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl---------------~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSL---------------EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeE---------------EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccc
Confidence 345555 999999 56999999 9999999999999999999987777776543 2
Q ss_pred -----------CEEEEcCC-CCCCCCCHHHHHHcc-ccCCCCCC-cccHHHHHHHHHHhhcCCCcccccc--CCcCCcCC
Q 023731 76 -----------RVVLVNQD-SFYHNLTEQELARVH-EYNFDHPD-AFDTEKLLSSMEKLRHGQAVDIPNY--DFKSYKNN 139 (278)
Q Consensus 76 -----------~~~~i~~D-~~~~~~~~~~~~~~~-~~~~~~~~-~~d~~~~~~~l~~~~~~~~i~~~~~--~~~~~~~~ 139 (278)
|+.++.++ ..|+.++..++.... ++...+.. .-....+.+.|+.+....--..+.+ +.+...|.
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~ 148 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRV 148 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHH
Confidence 34444443 344445544433221 11111111 1111223344444443322222433 33444444
Q ss_pred CCCccccCCCcEEEEcccccCCch
Q 023731 140 VFPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
..++.....|.++++|+|+++.||
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDP 172 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDP 172 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCc
Confidence 555666789999999999999987
No 352
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.15 E-value=3e-10 Score=93.13 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
+|+|+|++||||||+|+.|++.+ ++.+++.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~---~~~~is~~d~lr 35 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF---GFTHLSAGDLLR 35 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc---CCeEEECChHHH
Confidence 58999999999999999999998 589999887663
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.15 E-value=4.3e-11 Score=94.52 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=69.9
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
+++|++ ..+++++| ...++.+++|.|++|||||||++.|++.+++ .|...++..
T Consensus 7 ~~~~~~~~~l~~~~~---------------~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--------- 62 (144)
T cd03221 7 SKTYGGKLLLKDISL---------------TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--------- 62 (144)
T ss_pred EEEECCceEEEeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------
Confidence 677876 57999999 9999999999999999999999999998754 233333221
Q ss_pred HHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
....+. +.++.+..++....+..+.+++++++|+|...+|+..
T Consensus 63 ---~~i~~~---------------------------~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 63 ---VKIGYF---------------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred ---EEEEEE---------------------------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 000111 1244444445445566778999999999999998643
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.15 E-value=6e-11 Score=115.57 Aligned_cols=141 Identities=9% Similarity=0.042 Sum_probs=91.8
Q ss_pred hccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----------
Q 023731 9 MIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------- 75 (278)
Q Consensus 9 ~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------- 75 (278)
+|+-++ ++.|+ + ..|+++|| .+++|.+++|+|++|||||||++.|++.+++.
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl---------------~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~ 515 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSF---------------EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG 515 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCC
Confidence 466666 77773 4 56899999 99999999999999999999999999987642
Q ss_pred CEEEEcCCCCCCCCCHHHHHHccccCCCC-CCcccHHHHHHHHHHhhcCCCccc-----------cccCCcCCcCCCCCc
Q 023731 76 RVVLVNQDSFYHNLTEQELARVHEYNFDH-PDAFDTEKLLSSMEKLRHGQAVDI-----------PNYDFKSYKNNVFPA 143 (278)
Q Consensus 76 ~~~~i~~D~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~i~~-----------~~~~~~~~~~~~~~~ 143 (278)
.+.++.++.+....+..++..++....+. ......+.+.+.++.+.....+.. ..++.+..++...++
T Consensus 516 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 516 KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred cEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 25677787766544655554433211000 011223344455544433221111 134444555555556
Q ss_pred cccCCCcEEEEcccccCCchH
Q 023731 144 RRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+.+++++++|+|++.+|+.
T Consensus 596 al~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 596 LFYHKPQFAILDECTSAVSVD 616 (659)
T ss_pred HHHcCCCEEEEeCCccCCCHH
Confidence 677899999999999999875
No 355
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.15 E-value=3.6e-11 Score=101.67 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=79.0
Q ss_pred eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC---
Q 023731 15 GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF--- 85 (278)
Q Consensus 15 ~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~--- 85 (278)
++.|++ ..|+++|| ...++.+++|.|++|||||||++.|++.+++ .|...++..+.
T Consensus 8 ~~~~~~~~~~~~il~~vs~---------------~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 8 NHYYGHGSLRKQVLFDINL---------------EINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGA 72 (220)
T ss_pred EEEccCCCcceeEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhc
Confidence 667753 36999999 9999999999999999999999999998754 23333333221
Q ss_pred ---------------------CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCccc--cccCCcCCcC
Q 023731 86 ---------------------YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAVDI--PNYDFKSYKN 138 (278)
Q Consensus 86 ---------------------~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i~~--~~~~~~~~~~ 138 (278)
+...+..++..+...... .+.. +...+.++.+........ ..++.+..++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr 149 (220)
T TIGR02982 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP---NLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR 149 (220)
T ss_pred CHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH
Confidence 111222222111111000 0111 123344444433222211 2455555555
Q ss_pred CCCCccccCCCcEEEEcccccCCchH
Q 023731 139 NVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 139 ~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....+..+.+++++++|+|++.+|+.
T Consensus 150 v~laral~~~p~illlDEP~~~LD~~ 175 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEPTAALDSK 175 (220)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence 55556677899999999999999875
No 356
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=8.3e-11 Score=100.03 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=100.6
Q ss_pred CceeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC---CC
Q 023731 13 SSGVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY---HN 88 (278)
Q Consensus 13 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~---~~ 88 (278)
+-.+.+|+|+| +++| ..+..-+.+|-|+|||||||+.+++++...| .|...++...+. +.
T Consensus 5 ~~~~~lG~~~l-~a~~---------------~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~ 68 (352)
T COG4148 5 NFRQRLGNFAL-DANF---------------TLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKG 68 (352)
T ss_pred ehhhhcCceEE-EEec---------------cCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCC
Confidence 34778899999 8999 7888789999999999999999999999875 334444442222 11
Q ss_pred CCHHHHHHccccCCCCCCc----------------ccHHHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCccccCCCc
Q 023731 89 LTEQELARVHEYNFDHPDA----------------FDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~----------------~d~~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~~~~~~~~ 150 (278)
...........|.|++..- -....+...+..+..+.-. .+| ..+.+..+|+..-+..+..++
T Consensus 69 i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~ 148 (352)
T COG4148 69 IFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred cccChhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCC
Confidence 1111122222334443211 1223444444444433322 334 667777788777778889999
Q ss_pred EEEEcccccCCch-----------HHhhhcC-eEEEEecChhhhhHHhhhc
Q 023731 151 VILLEGILVFHDS-----------RVRELMN-MKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 151 iiiidg~~~~~d~-----------~~~~~~d-~~I~l~~~~e~~~~R~~~R 189 (278)
++++|+|++.+|. .+.+..+ -++||..+.++ ..|+..|
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E-v~RLAd~ 198 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE-VLRLADR 198 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH-HHhhhhe
Confidence 9999999998874 1223334 46788887775 4455443
No 357
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.15 E-value=6.9e-11 Score=100.34 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=77.9
Q ss_pred eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC---C-CCEE-------
Q 023731 15 GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-QRVV------- 78 (278)
Q Consensus 15 ~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~---~-~~~~------- 78 (278)
..+|.+ ..++++|| ++.++.+++|+|++|||||||++.|++.+. + .|..
T Consensus 10 ~~~~~~~~~~~~~l~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 10 GLKAKNWNKYARILNDVSL---------------HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred eeeeecCccccccccCceE---------------EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 566653 46999999 999999999999999999999999999886 3 3323
Q ss_pred ----------EEcCCC-CCCCCCHHHHHHccccCCCCCC---cccHHHHHH-HHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 79 ----------LVNQDS-FYHNLTEQELARVHEYNFDHPD---AFDTEKLLS-SMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 79 ----------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~-~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
++.++. ++..++..++..+......... ........+ .+..+...... ....++.+..++...
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 333332 2223343333332211110000 000011111 23222221111 112444455555555
Q ss_pred CccccCCCcEEEEcccccCCchH
Q 023731 142 PARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..+.+++++++|+|++.+|+.
T Consensus 155 aral~~~p~illlDEP~~gLD~~ 177 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSF 177 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHH
Confidence 56667889999999999999864
No 358
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.14 E-value=2.9e-11 Score=103.37 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=40.5
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.+
T Consensus 7 ~~~~~~~~~~~l~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 7 RFRYKPDGPVILDNISL---------------RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred EEecCCCCccceeceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 677852 57999999 9999999999999999999999999998754
No 359
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.14 E-value=9.6e-11 Score=113.52 Aligned_cols=158 Identities=13% Similarity=0.197 Sum_probs=93.4
Q ss_pred hccCCc-eeeeC---C---------ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-
Q 023731 9 MIEASS-GVHFS---G---------FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD- 74 (278)
Q Consensus 9 ~~~~~~-~~~~~---~---------~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~- 74 (278)
|++.++ ++.|+ + .+|++||| .+.+|.+++|+|+||||||||++.|++.+.+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~---------------~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~ 377 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSF---------------DLWPGETLSLVGESGSGKSTTGRALLRLVESQ 377 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEe---------------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 677777 88885 1 36999999 9999999999999999999999999998753
Q ss_pred CCEEEEcCCCCCCCCCHHH---HHHccccCCCCCC-cc--------------------cH----HHHHHHHHHhhcCC-C
Q 023731 75 QRVVLVNQDSFYHNLTEQE---LARVHEYNFDHPD-AF--------------------DT----EKLLSSMEKLRHGQ-A 125 (278)
Q Consensus 75 ~~~~~i~~D~~~~~~~~~~---~~~~~~~~~~~~~-~~--------------------d~----~~~~~~l~~~~~~~-~ 125 (278)
.|...++..++.. ..... ......+.|+++. .+ .. +...+.++.+.... .
T Consensus 378 ~G~I~~~g~~i~~-~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~ 456 (623)
T PRK10261 378 GGEIIFNGQRIDT-LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456 (623)
T ss_pred CcEEEECCEECCc-CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHH
Confidence 3444444332211 11111 0111122232220 00 00 12223333332211 1
Q ss_pred c--cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh-----------hhcC-eEEEEecChhhh
Q 023731 126 V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR-----------ELMN-MKIFVDTDADVR 182 (278)
Q Consensus 126 i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~-----------~~~d-~~I~l~~~~e~~ 182 (278)
. ....++.+..+++..++..+.+++++|+|+|++.+|.... +..+ .+|++..+.+..
T Consensus 457 ~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v 527 (623)
T PRK10261 457 AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV 527 (623)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1 1125555555666666677789999999999999997432 1112 466777666543
No 360
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.14 E-value=3.7e-11 Score=118.00 Aligned_cols=136 Identities=16% Similarity=0.192 Sum_probs=82.4
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C--------------------CEEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-Q--------------------RVVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~--------------------~~~~i~ 81 (278)
++||+|++.+...|.......++++|..|+|+|+||||||||++.|++.+++ . .+.+++
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~ 545 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVP 545 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEEC
Confidence 4555555433333333344449999999999999999999999999999865 2 244555
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+...-+..++..++. +. .+.+.+.+.++. +..|-...+ ..++.+..+|...++..+.+
T Consensus 546 Q~~~lf~~TI~eNi~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 546 QDPRLFYGTLRDNIALGA-----PY-ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred CChhhhhhhHHHHHhCCC-----CC-CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 555554444444444322 21 333444333332 222211111 13344444555555667789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|++++.+|+.
T Consensus 620 p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 620 PPILLLDEPTSAMDNR 635 (694)
T ss_pred CCEEEEeCCCCCCCHH
Confidence 9999999999999875
No 361
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.7e-10 Score=99.52 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=40.5
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
.+.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+.
T Consensus 12 ~~~~~~~~~l~~is~---------------~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 12 NLWYGSKQILFDINL---------------DIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEEECCeeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 778877 46999999 999999999999999999999999999864
No 362
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.14 E-value=8.5e-11 Score=110.92 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=85.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDS 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~ 84 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|.|++|||||||++.|++.+++ .|...++..+
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl---------------~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSW---------------QVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR 324 (490)
T ss_pred eEEEeceEEEECCeeEEeeceE---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc
Confidence 567777 889987 46999999 9999999999999999999999999997653 4555554422
Q ss_pred CCCCCCHHHHHHccccC----------------------CCC---CCccc---HHHHHHHHHHhhcCC-Cccc--cccCC
Q 023731 85 FYHNLTEQELARVHEYN----------------------FDH---PDAFD---TEKLLSSMEKLRHGQ-AVDI--PNYDF 133 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~----------------------~~~---~~~~d---~~~~~~~l~~~~~~~-~i~~--~~~~~ 133 (278)
...............+. +.. ..... .+...+.++.+.... .... ..++.
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 404 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSW 404 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCH
Confidence 11100000000000000 000 00011 122334444443322 1122 25555
Q ss_pred cCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 134 KSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 134 ~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+..+++..++..+.+++++++|+|++.+|+..
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~ 436 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLN 436 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 55566666667778999999999999998753
No 363
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.13 E-value=4.1e-11 Score=117.95 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=75.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..|+|+|+||||||||++.|++.+.| ..+.++++|.+...-+.+++..++.
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~--- 572 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGA--- 572 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccC---
Confidence 9999999999999999999999999999865 1356667776665555555554331
Q ss_pred CCCCcccHHHHHHHHHHh---------hcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSSMEKL---------RHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~~---------~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+ ..+.+.+.+.++.. ..|-...+ ..++.+..+|...++..+.+++++++|++++.+|+.
T Consensus 573 -~~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 573 -KE-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred -CC-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 11 23334444443322 22211111 133444445555566677899999999999998864
No 364
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.8e-10 Score=100.13 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=46.2
Q ss_pred hhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 7 VDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 7 ~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+.+|+.++ +++|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINM---------------MVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEE---------------EEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 34677677 899987 56999999 999999999999999999999999999875
No 365
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.3e-10 Score=112.62 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=45.9
Q ss_pred hccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 9 MIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 9 ~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
||+.++ ++.|++ .+|++||| .+.+|.+++|+|+||||||||+++|++.+.+
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~---------------~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p 68 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSF---------------SLQRGETLAIVGESGSGKSVTALALMRLLEQ 68 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEE---------------EECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 677777 999962 47999999 9999999999999999999999999999864
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=94.48 Aligned_cols=137 Identities=20% Similarity=0.250 Sum_probs=87.8
Q ss_pred cCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCCCC
Q 023731 11 EASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYH 87 (278)
Q Consensus 11 ~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~D~~~~ 87 (278)
+-.+ +|.|+|| +|+++|| .+.++.+-+|+||+||||||+...+.+.-+|. |..+++++.-..
T Consensus 7 ~~~~vsVsF~GF~Aln~ls~---------------~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~ 71 (249)
T COG4674 7 YLDGVSVSFGGFKALNDLSF---------------SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLT 71 (249)
T ss_pred EEeceEEEEcceeeeeeeEE---------------EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhc
Confidence 3344 9999997 5999999 99999999999999999999999999998765 667777743333
Q ss_pred CCCHHHHHHcc-ccCCCCCCcccH------------------------------HHHHHHHHHhhcCCCccc--cccCCc
Q 023731 88 NLTEQELARVH-EYNFDHPDAFDT------------------------------EKLLSSMEKLRHGQAVDI--PNYDFK 134 (278)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~~~~~d~------------------------------~~~~~~l~~~~~~~~i~~--~~~~~~ 134 (278)
.+........+ .-.|+.|.-|.. .++.+.|..+..+..... ...+++
T Consensus 72 ~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHG 151 (249)
T COG4674 72 KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHG 151 (249)
T ss_pred cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccc
Confidence 33333332221 113444433321 234444444433332211 234444
Q ss_pred CCcCCCCCccccCCCcEEEEcccccCCc
Q 023731 135 SYKNNVFPARRVNPSDVILLEGILVFHD 162 (278)
Q Consensus 135 ~~~~~~~~~~~~~~~~iiiidg~~~~~d 162 (278)
..+.+..-...+.++.++++|+|.++.-
T Consensus 152 qKQwLEIGMll~Q~P~lLLlDEPvAGMT 179 (249)
T COG4674 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMT 179 (249)
T ss_pred hhhhhhhheeeccCCcEEEecCccCCCc
Confidence 4444333345568899999999999863
No 367
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.12 E-value=8.2e-11 Score=124.56 Aligned_cols=144 Identities=18% Similarity=0.071 Sum_probs=88.9
Q ss_pred hhccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 8 DMIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 8 ~~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
+||+..+ ++.|++ .+|++||| .+.+|.+++|.|++||||||+.+.|++.+.+ .|...+.+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf---------------~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G 2000 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCV---------------GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAG 2000 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEE---------------EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECC
Confidence 4677777 899985 47999999 9999999999999999999999999998754 23333332
Q ss_pred -------------------C-CCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCC--ccccccCCcCCcCCC
Q 023731 83 -------------------D-SFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQA--VDIPNYDFKSYKNNV 140 (278)
Q Consensus 83 -------------------D-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~~ 140 (278)
+ .++..++..+...+.....+.+.....+...+.++.+..... .....++.+..+++.
T Consensus 2001 ~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLs 2080 (2272)
T TIGR01257 2001 KSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLS 2080 (2272)
T ss_pred EECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHH
Confidence 2 222333433332221111111110001122233333322211 122356666666666
Q ss_pred CCccccCCCcEEEEcccccCCchHHh
Q 023731 141 FPARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
.++..+.+++++++|+|.+++|+..+
T Consensus 2081 lA~ALi~~P~VLLLDEPTsGLDp~sr 2106 (2272)
T TIGR01257 2081 TAIALIGCPPLVLLDEPTTGMDPQAR 2106 (2272)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 66667789999999999999998533
No 368
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.12 E-value=5e-11 Score=113.96 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=72.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHHccccCCCCC-----------CcccHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYNFDHP-----------DAFDTE 111 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~d~~ 111 (278)
.+++|..++|+|+||||||||++.|++.+++ .|...++.-+. .+...........+.++++ ...+.+
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 423 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV-TAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPA 423 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC-CCCCHHHHhhheEEEecChhHHHHhhccccCchHHH
Confidence 9999999999999999999999999998864 34455544322 1222222222112222211 122333
Q ss_pred HHHHHHHHhhcCCCcccc-------ccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 112 KLLSSMEKLRHGQAVDIP-------NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 112 ~~~~~l~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.+.++.+..+..+..+ .++.+..+|...++..+.+++++++|++.+.+|+.
T Consensus 424 ~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~ 483 (547)
T PRK10522 424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483 (547)
T ss_pred HHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 444555554433322211 33344444555556677899999999999998875
No 369
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.12 E-value=6.1e-11 Score=114.43 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------------------~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..|+|+|+||||||||++.|.+.+.|. | +.++++|.+..+-+.+++..+++
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--- 439 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--- 439 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC---
Confidence 99999999999999999999999999998762 2 44555555554444444444322
Q ss_pred CCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+.+.+.+.++. +..|-.... ..++.+..+|...++..+.+++++++|+|.+.+|++
T Consensus 440 ----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 440 ----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred ----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 1233333443332 222211111 123444445555566677899999999999999875
No 370
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.12 E-value=9.3e-11 Score=112.79 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------------------EEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~--------------------~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..++|+|+||||||||++.|.+.+.+. | +.++++|.+..+-+.+++..++
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~---- 437 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG---- 437 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcC----
Confidence 99999999999999999999999999998652 2 3555555555444444444332
Q ss_pred CCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++. .+.+.+.+.++. +..|-...+ ..++.+..++...++..+.+++++++|+|.+..|+.
T Consensus 438 -~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~ 510 (576)
T TIGR02204 438 -RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510 (576)
T ss_pred -CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHH
Confidence 222 223334333332 222222111 123334444445556667899999999999998875
No 371
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=2.8e-10 Score=101.01 Aligned_cols=144 Identities=15% Similarity=0.279 Sum_probs=89.5
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCHHHHHHccc
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHE 99 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~D~~~~~~~~~~~~~~~~ 99 (278)
|++..||+ ++++|.+|.|+|.+||||||+++.|.+.+.|+ |-..+++...-.+ +..+.+.+-.
T Consensus 337 FhvgPiNl---------------~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e-~ledYR~LfS 400 (546)
T COG4615 337 FHVGPINL---------------TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAE-QLEDYRKLFS 400 (546)
T ss_pred ceecceee---------------EEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCC-CHHHHHHHHH
Confidence 89999999 99999999999999999999999999999763 4566666544322 2222211111
Q ss_pred cCCCC---------CCc-ccHHHHHHHHHHhhcCCCccc-----cccCCcCC--cCCCCCccccCCCcEEEEcccccCCc
Q 023731 100 YNFDH---------PDA-FDTEKLLSSMEKLRHGQAVDI-----PNYDFKSY--KNNVFPARRVNPSDVILLEGILVFHD 162 (278)
Q Consensus 100 ~~~~~---------~~~-~d~~~~~~~l~~~~~~~~i~~-----~~~~~~~~--~~~~~~~~~~~~~~iiiidg~~~~~d 162 (278)
-.|.+ ++. -........+..+.....+.. .....+++ +|.......+++.+++++|++.+-+|
T Consensus 401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 11211 122 223444555555554332211 22223333 33333334568899999999999999
Q ss_pred hHHhhhc-----------CeEEEEecChh
Q 023731 163 SRVRELM-----------NMKIFVDTDAD 180 (278)
Q Consensus 163 ~~~~~~~-----------d~~I~l~~~~e 180 (278)
|.++..| +.+||.-.+.+
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 9887665 45666555444
No 372
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2.4e-10 Score=101.37 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=46.4
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+..||..++ ++.|++ .+|+++|| .+.+|.+++|+|++|||||||++.|++.+.
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~---------------~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSM---------------DIPEKSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344677666 889987 57999999 999999999999999999999999999874
No 373
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.11 E-value=2e-10 Score=98.71 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=69.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--------EEEEcCCCC-CCCCCHHHHHHccccCCCCCCcccHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------VVLVNQDSF-YHNLTEQELARVHEYNFDHPDAFDTEKL 113 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------~~~i~~D~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 113 (278)
.+.++.+++|.|++|||||||++.|++.+.+ .| +.++.++.. ....+..++.......... .....
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~ 96 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYT----HPYFK 96 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccc----cHHHH
Confidence 5678999999999999999999999998754 22 334444322 2223333332211000000 01112
Q ss_pred HHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 114 LSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 114 ~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+.++.+...... ....++.+..+++..++..+.+++++++|+|.+.+|+..
T Consensus 97 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2333333222111 113555566666666667788999999999999998753
No 374
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.8e-10 Score=109.16 Aligned_cols=141 Identities=12% Similarity=0.188 Sum_probs=84.8
Q ss_pred hccCCc-eeeeC---C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEc
Q 023731 9 MIEASS-GVHFS---G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~---~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~ 81 (278)
||+..+ ++.|+ + ..|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|...++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl---------------~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~ 323 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSF---------------SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323 (506)
T ss_pred eEEEecCccccccccccccccceee---------------EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEEC
Confidence 566666 78883 3 46999999 9999999999999999999999999998762 4444443
Q ss_pred CCCC-------------------------CCCCCHHHHHHcccc-CCCCCCccc----HHHHHHHHHHhhcC-CCcc--c
Q 023731 82 QDSF-------------------------YHNLTEQELARVHEY-NFDHPDAFD----TEKLLSSMEKLRHG-QAVD--I 128 (278)
Q Consensus 82 ~D~~-------------------------~~~~~~~~~~~~~~~-~~~~~~~~d----~~~~~~~l~~~~~~-~~i~--~ 128 (278)
..++ +..++..++..++.. .+.....++ .+...+.++.+... .... .
T Consensus 324 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 403 (506)
T PRK13549 324 GKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI 403 (506)
T ss_pred CEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc
Confidence 3221 111222222111100 000000011 12233444444332 1122 2
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..++.+..+++..++..+.+++++++|+|++.+|+.
T Consensus 404 ~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~ 439 (506)
T PRK13549 404 ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVG 439 (506)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHh
Confidence 255555566666666677899999999999999874
No 375
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.11 E-value=1.6e-10 Score=98.48 Aligned_cols=125 Identities=14% Similarity=0.112 Sum_probs=74.5
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC----------------C
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS----------------F 85 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~----------------~ 85 (278)
|+++|| .+.++.+++|+|++|||||||++.|++.+.+ .|...++..+ +
T Consensus 1 l~~is~---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l 65 (230)
T TIGR01184 1 LKGVNL---------------TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL 65 (230)
T ss_pred CCceeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCccc
Confidence 578999 9999999999999999999999999998764 3434333311 1
Q ss_pred CCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEccccc
Q 023731 86 YHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (278)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~ 159 (278)
+...+..++..+....+. + .++. +...+.++.+...... ....++.+..++....+..+.+++++++|+|++
T Consensus 66 ~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 143 (230)
T TIGR01184 66 LPWLTVRENIALAVDRVL-P-DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143 (230)
T ss_pred CCCCCHHHHHHHHHHhcc-c-CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 122333333222100000 0 1111 1233344443322211 112455555556555566778999999999999
Q ss_pred CCchH
Q 023731 160 FHDSR 164 (278)
Q Consensus 160 ~~d~~ 164 (278)
.+|+.
T Consensus 144 gLD~~ 148 (230)
T TIGR01184 144 ALDAL 148 (230)
T ss_pred CCCHH
Confidence 99974
No 376
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.11 E-value=1.8e-10 Score=109.65 Aligned_cols=139 Identities=12% Similarity=0.173 Sum_probs=85.0
Q ss_pred hccCCc-eeeeC-----------C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 023731 9 MIEASS-GVHFS-----------G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ 75 (278)
Q Consensus 9 ~~~~~~-~~~~~-----------~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~ 75 (278)
||+.++ ++.|+ + ..|++||| .+.+|.+++|.|+||||||||++.|++.++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~ 339 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISF---------------TLRPGETLGLVGESGSGKSTTGLALLRLINSQ 339 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeeccee---------------EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC
Confidence 577777 88885 2 46999999 99999999999999999999999999987544
Q ss_pred CEEEEcCCCC--------------------------CCCCCHHHHHHccccCCCCCCccc----HHHHHHHHHHhhcCC-
Q 023731 76 RVVLVNQDSF--------------------------YHNLTEQELARVHEYNFDHPDAFD----TEKLLSSMEKLRHGQ- 124 (278)
Q Consensus 76 ~~~~i~~D~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~d----~~~~~~~l~~~~~~~- 124 (278)
|...++..++ +..++..++..++..... ..++ .+...+.+..+....
T Consensus 340 G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~ 417 (529)
T PRK15134 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ--PTLSAAQREQQVIAVMEEVGLDPE 417 (529)
T ss_pred cEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHHcCCCHH
Confidence 5444444222 111122221111100000 0011 112233344433221
Q ss_pred Cc--cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 125 AV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 125 ~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.. ....++.+..+++..++..+.+++++++|+|++.+|+.
T Consensus 418 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 459 (529)
T PRK15134 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKT 459 (529)
T ss_pred HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHH
Confidence 11 11245555556666666677899999999999999874
No 377
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.11 E-value=3.6e-10 Score=89.81 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=89.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCC-----CcccHHHHHHHHHHhhcC
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHP-----DAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~~~~~l~~~~~~ 123 (278)
+.|+|+|.+|+||||+|+.|+ .+ +..+++..++..+ ....++.+ -..|.+.+...+..+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i~l~el~~e---------~~~~~~~de~r~s~~vD~d~~~~~le~~~-- 65 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVIELNELAKE---------NGLYTEYDELRKSVIVDVDKLRKRLEELL-- 65 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCceeeHHHHHHh---------cCCeeccCCccceEEeeHHHHHHHHHHHh--
Confidence 479999999999999999999 55 4666666444321 11122221 1245555555555332
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHH
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLD 203 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 203 (278)
.....|+|+.++.+ .+.+|++|-|.+++++..+|+..|+ ++..+..+...+
T Consensus 66 ------------------------~~~~~Ivd~H~~hl----~~~~dlVvVLR~~p~~L~~RLk~RG-y~~eKI~ENveA 116 (180)
T COG1936 66 ------------------------REGSGIVDSHLSHL----LPDCDLVVVLRADPEVLYERLKGRG-YSEEKILENVEA 116 (180)
T ss_pred ------------------------ccCCeEeechhhhc----CCCCCEEEEEcCCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 11235778776543 3378999999999999999998885 555555555554
Q ss_pred HHhhccc-cccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhhc
Q 023731 204 QYSKFVK-PAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLG 250 (278)
Q Consensus 204 ~~~~~~~-~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l~ 250 (278)
+...... .+.+ ...+-+.|+..+.++ +++++.|.++++
T Consensus 117 Ei~~vi~~EA~E------~~~~v~evdtt~~s~---ee~~~~i~~ii~ 155 (180)
T COG1936 117 EILDVILIEAVE------RFEAVIEVDTTNRSP---EEVAEEIIDIIG 155 (180)
T ss_pred HHHHHHHHHHHH------hcCceEEEECCCCCH---HHHHHHHHHHHc
Confidence 4332211 1111 113456777766554 555555555544
No 378
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.11 E-value=2e-10 Score=91.79 Aligned_cols=143 Identities=16% Similarity=0.198 Sum_probs=88.8
Q ss_pred hccCCc-eeeeCCcc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC-
Q 023731 9 MIEASS-GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS- 84 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~- 84 (278)
.++..+ -++||... |++||+ ..+.+.+|.|+|.|||||||+.+++.-.-.| .|...+++..
T Consensus 6 ~l~v~dlHK~~G~~eVLKGvSL---------------~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGVSL---------------QANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhcccchhhcceee---------------ecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEE
Confidence 455555 89999964 999999 9999999999999999999999999876544 3334444422
Q ss_pred --------CCCCCCHHHHHHc---cccCCCCCCcccH-----------------------HHHHHHHHHhhcCC-Ccccc
Q 023731 85 --------FYHNLTEQELARV---HEYNFDHPDAFDT-----------------------EKLLSSMEKLRHGQ-AVDIP 129 (278)
Q Consensus 85 --------~~~~~~~~~~~~~---~~~~~~~~~~~d~-----------------------~~~~~~l~~~~~~~-~i~~~ 129 (278)
-......+....+ -.+.|++.+-|.- +.....|....... .-.+|
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc
Confidence 2222222222221 1334554433221 11111222211111 11345
Q ss_pred -ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh
Q 023731 130 -NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
.++.+..+|...++...-.+.++++|+|.+.+||++-
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElV 188 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELV 188 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHH
Confidence 5555666676666667788999999999999998754
No 379
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.10 E-value=3.2e-10 Score=97.77 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=43.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~ 71 (278)
||+.++ ++.|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNL---------------SINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eEEEEeEEEEeCCEEeeeccee---------------EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 566677 889987 57999999 9999999999999999999999999996
No 380
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.10 E-value=5.5e-11 Score=115.49 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=49.0
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
||+..+ ++.|++ ..|+|||| .+.+|.+++|+|++|||||||+++|++.+.+ .|...++
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~---------------~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~ 63 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAEL---------------HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEE---------------EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeC
Confidence 577777 999988 56999999 9999999999999999999999999998754 3444343
No 381
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.10 E-value=5.1e-11 Score=101.89 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=43.8
Q ss_pred eeeeCC----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 15 GVHFSG----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 15 ~~~~~~----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
++.|++ ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|-..++.
T Consensus 7 ~~~~~~~~~~~~l~~i~~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 64 (238)
T cd03249 7 SFRYPSRPDVPILKGLSL---------------TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDG 64 (238)
T ss_pred EEecCCCCCccceeceEE---------------EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECC
Confidence 777863 37999999 9999999999999999999999999998753 34444443
No 382
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2e-10 Score=111.56 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC--
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD-- 83 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D-- 83 (278)
||...+ ++.|++ ..|++||| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++..
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~---------------~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~ 65 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATA---------------TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQ 65 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCE
Confidence 456667 999998 56999999 9999999999999999999999999998754 343333322
Q ss_pred -------CCCCCCCHHHHHH-----ccc----------------c-----CCCCCCcccH-HHHHHHHHHhhcCC-Cc--
Q 023731 84 -------SFYHNLTEQELAR-----VHE----------------Y-----NFDHPDAFDT-EKLLSSMEKLRHGQ-AV-- 126 (278)
Q Consensus 84 -------~~~~~~~~~~~~~-----~~~----------------~-----~~~~~~~~d~-~~~~~~l~~~~~~~-~i-- 126 (278)
......+...... +.. + .+.....++. ....+.+..+.... ..
T Consensus 66 i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 145 (638)
T PRK10636 66 LAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLER 145 (638)
T ss_pred EEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcC
Confidence 1111111111100 000 0 0000001111 23334444443321 11
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
....++.+..+++..++..+.+++++++|+|++.+|+.
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~ 183 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLD 183 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHH
Confidence 22355556666666666778899999999999999974
No 383
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.10 E-value=2.9e-10 Score=108.14 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=92.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCccc-HHHHHHHHHHhhcCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFD-TEKLLSSMEKLRHGQ 124 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~l~~~~~~~ 124 (278)
.+...|.++|++||||||+++.|++.| +..+++.|.++.........+ .|...+.-. .+.-.+.+..+
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L---~~~fiD~D~~ie~~~g~si~e----if~~~Ge~~FR~~E~~~l~~~---- 72 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMM---RLPFADADVEIEREIGMSIPS----YFEEYGEPAFREVEADVVADM---- 72 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHh---CCCEEEchHHHHHHHCcCHHH----HHHHHHHHHHHHHHHHHHHHH----
Confidence 455679999999999999999999999 589999998663322111111 011000000 00001111111
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh-------cCeEEEEecChhhhhHHhhhccccc-cCC
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL-------MNMKIFVDTDADVRLARRIRRDTVE-KGR 196 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~-------~d~~I~l~~~~e~~~~R~~~R~~~~-~~~ 196 (278)
......+|..|.....+++.+.. ...+|||+++.++..+|+..+...+ -..
T Consensus 73 ---------------------~~~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~ 131 (542)
T PRK14021 73 ---------------------LEDFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNG 131 (542)
T ss_pred ---------------------HhcCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCC
Confidence 11223466677666656654432 3589999999999999986443221 101
Q ss_pred CHHHHHHHHhhccccccccccccccccccEEeeCCCCcH-HHHHHHHHHHH
Q 023731 197 DIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNH-VAIDLIVQHIR 246 (278)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~-~~~~~l~~~I~ 246 (278)
...+...+......|.| .+.||++|++++.++ ...+.+++.+.
T Consensus 132 ~~~~~~~~l~~~R~~~Y-------~~~Ad~~i~~~~~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 132 DANKRWKKLFKQRDPVF-------RQVANVHVHTRGLTPQAAAKKLIDMVA 175 (542)
T ss_pred CcHHHHHHHHHHHHHHH-------HhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 11233333444445554 578999999877654 33345555443
No 384
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.10 E-value=2.4e-10 Score=109.32 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=87.6
Q ss_pred hhccCCc-eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC-------
Q 023731 8 DMIEASS-GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR------- 76 (278)
Q Consensus 8 ~~~~~~~-~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~------- 76 (278)
.||+..+ ++.|+ + ..|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~---------------~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISL---------------SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG 67 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC
Confidence 3677777 99997 5 57999999 9999999999999999999999999998753 22
Q ss_pred --EEEEcCCC-CCCCCCHHHHHHcccc--------------CCCCCCc---------------------cc-HHHHHHHH
Q 023731 77 --VVLVNQDS-FYHNLTEQELARVHEY--------------NFDHPDA---------------------FD-TEKLLSSM 117 (278)
Q Consensus 77 --~~~i~~D~-~~~~~~~~~~~~~~~~--------------~~~~~~~---------------------~d-~~~~~~~l 117 (278)
+.++.++. ++..++..++..++.. .+..+.. ++ ...+.+.+
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 34555553 2334455444322100 0010000 00 01112222
Q ss_pred HHhhcCC-CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 118 EKLRHGQ-AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 118 ~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+.... ......++.+..++....+..+.+++++++|+|++.+|+.
T Consensus 148 ~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~ 195 (552)
T TIGR03719 148 DALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 195 (552)
T ss_pred hhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChH
Confidence 2222111 1112245555555655556677899999999999999974
No 385
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.10 E-value=5e-11 Score=114.44 Aligned_cols=134 Identities=15% Similarity=0.226 Sum_probs=83.0
Q ss_pred ccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE-----
Q 023731 10 IEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV----- 80 (278)
Q Consensus 10 ~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i----- 80 (278)
|+-.+ +.+|++ ..|+|+|| .++++..+||+|+|||||||+++.|.+.+++ .|...+
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~---------------~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISF---------------SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred EEEEEEEEEcCCCCccccCceE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 44445 777873 57999999 9999999999999999999999999999986 444444
Q ss_pred ---------------cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCCccc----cccC
Q 023731 81 ---------------NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYD 132 (278)
Q Consensus 81 ---------------~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~i~~----~~~~ 132 (278)
++|.+...-+..++-.++. ++ ...+.+.+.++... .|-.... ..++
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-----~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS 467 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGR-----PD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS 467 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecccHHHHHhcCC-----CC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence 3343333333333333222 22 22233444333221 1111111 1233
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..++...++..+.+++++|+|++++..|..
T Consensus 468 gGQrQrlaiARall~~~~ILILDEaTSalD~~ 499 (567)
T COG1132 468 GGQRQRLAIARALLRNPPILILDEATSALDTE 499 (567)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccccccCHH
Confidence 33344445556677889999999999998753
No 386
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.9e-10 Score=111.65 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=94.7
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV-------- 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~-------- 77 (278)
||+..+ ++.|++ ..|+++|| .+.+|.+++|+||+|||||||++.|++.+.+ .|.
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl---------------~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ 376 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKL---------------NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIK 376 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEE
Confidence 577777 889987 57999999 9999999999999999999999999998754 232
Q ss_pred -EEEcCCCC--C-CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC-Cc--cccccCCcCCcCCCCCccccCCCc
Q 023731 78 -VLVNQDSF--Y-HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AV--DIPNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 78 -~~i~~D~~--~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~i--~~~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
.+++++.. . ...+.. ..+.. +. + ........+.+..+.... .. ....++.+..+++..++..+.+++
T Consensus 377 igy~~Q~~~~~l~~~~~~~--~~~~~--~~-~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPL--QHLAR--LA-P-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred EEEecCcchhhCCccchHH--HHHHH--hC-c-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 33333310 0 001111 11100 00 1 111233445555554421 12 223555566666666666778999
Q ss_pred EEEEcccccCCchHHhh--------hcCeEEEEecChhh
Q 023731 151 VILLEGILVFHDSRVRE--------LMNMKIFVDTDADV 181 (278)
Q Consensus 151 iiiidg~~~~~d~~~~~--------~~d~~I~l~~~~e~ 181 (278)
++++|+|++.+|..... .-..+|++..+.+.
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~ 489 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHL 489 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 99999999999974332 22356676666554
No 387
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.09 E-value=1.5e-10 Score=109.59 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=85.9
Q ss_pred hccCCc-eeee---CC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEc
Q 023731 9 MIEASS-GVHF---SG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVN 81 (278)
Q Consensus 9 ~~~~~~-~~~~---~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~ 81 (278)
||+..+ ++.| ++ ..|+++|| .+.+|.+++|+|++|||||||.+.|++.+.| .|...++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~---------------~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~ 321 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSF---------------SLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFIN 321 (500)
T ss_pred eEEEeCCccccccccccccccccee---------------EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEEC
Confidence 566666 7778 33 46999999 9999999999999999999999999999863 4544444
Q ss_pred CCCC-------------------------CCCCCHHHHHHccccC-CCCCCccc----HHHHHHHHHHhhcCC-Ccc--c
Q 023731 82 QDSF-------------------------YHNLTEQELARVHEYN-FDHPDAFD----TEKLLSSMEKLRHGQ-AVD--I 128 (278)
Q Consensus 82 ~D~~-------------------------~~~~~~~~~~~~~~~~-~~~~~~~d----~~~~~~~l~~~~~~~-~i~--~ 128 (278)
..+. +..++..++..+.... +.....++ .+...+.++.+.... ... .
T Consensus 322 g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 401 (500)
T TIGR02633 322 GKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI 401 (500)
T ss_pred CEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc
Confidence 3221 1111221211111000 00000011 122344455544321 122 2
Q ss_pred cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 129 PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..++.+..++...++..+.+++++++|+|++.+|+..
T Consensus 402 ~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~ 438 (500)
T TIGR02633 402 GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438 (500)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH
Confidence 2555555666666666778899999999999998753
No 388
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.4e-10 Score=102.24 Aligned_cols=139 Identities=9% Similarity=0.011 Sum_probs=80.7
Q ss_pred hccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEE
Q 023731 9 MIEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------QRVV 78 (278)
Q Consensus 9 ~~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------~~~~ 78 (278)
+|+-.+ ++.|.+ ..|++||| .+.+|.+++|+|++|||||||+++|.+.... .|..
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~---------------~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I 144 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNL---------------DIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI 144 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 455555 777742 46899999 9999999999999999999999999998632 3433
Q ss_pred EEcC----------------------CCCCCCCCHHHHHHccccCCCCCCcccHHH----HHHHHHHhhcCC----Cc--
Q 023731 79 LVNQ----------------------DSFYHNLTEQELARVHEYNFDHPDAFDTEK----LLSSMEKLRHGQ----AV-- 126 (278)
Q Consensus 79 ~i~~----------------------D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~l~~~~~~~----~i-- 126 (278)
.+++ +.+....+..++..++.. +. ...+.+. ..+.++...... .+
T Consensus 145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~-~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~ 221 (329)
T PRK14257 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPR-NN--GINDRKILEKIVEKSLKSAALWDEVKDDLDK 221 (329)
T ss_pred EECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHH-hc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhC
Confidence 3333 322222222222221110 00 0001111 122233221100 01
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
....++.+..++...++..+.+++++++|+|++.+|+..
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~ 260 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 112444445555555666778999999999999998753
No 389
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.09 E-value=7.3e-11 Score=112.78 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=70.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--------------------EEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------------------~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..++|+|+||||||||++.|++.+++ .| +.++.++.+..+.+..++..+..
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~--- 416 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFG--- 416 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccC---
Confidence 9999999999999999999999999999864 22 34445554443334433332111
Q ss_pred CCCCcccHHHHHH---------HHHHhhcCCCcc----ccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLS---------SMEKLRHGQAVD----IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~---------~l~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+ ..+.+.+.+ .++.+..|-... -..++.+..+|...++..+.+++++++|+|++..|+.
T Consensus 417 --~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 417 --E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred --C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 1 122233322 223332221111 1234444445555566778899999999999998864
No 390
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.1e-09 Score=83.66 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=42.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHcc-ccCCCCCCcccH
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDT 110 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~d~ 110 (278)
+-+|.|.|++||||||++++|++.| ++.++++|+|+..... +.+. ....++.++|.|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l---~~~F~dgDd~Hp~~Nv---eKM~~GipLnD~DR~pW 69 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEEL---GLKFIDGDDLHPPANV---EKMTQGIPLNDDDRWPW 69 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHh---CCcccccccCCCHHHH---HHHhcCCCCCcccccHH
Confidence 4489999999999999999999999 5999999998854332 3332 334555555554
No 391
>PRK14531 adenylate kinase; Provisional
Probab=99.09 E-value=7.2e-10 Score=91.07 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=32.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
...|+|+|++||||||+++.|++.+ ++.+++.+++++
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~---g~~~is~gd~lr 38 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAH---GLRHLSTGDLLR 38 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---CCCeEecccHHH
Confidence 3569999999999999999999998 588888877663
No 392
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=7.4e-11 Score=100.73 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=43.3
Q ss_pred eeeeC-C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc
Q 023731 15 GVHFS-G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN 81 (278)
Q Consensus 15 ~~~~~-~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~ 81 (278)
+++|+ + ..++++|| .+.+|.+++|+|++|||||||++.|++.+++ .|...++
T Consensus 7 ~~~~~~~~~~l~~i~~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~ 61 (236)
T cd03253 7 TFAYDPGRPVLKDVSF---------------TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILID 61 (236)
T ss_pred EEEeCCCCceeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEEC
Confidence 67885 3 47999999 9999999999999999999999999998754 3434443
No 393
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.08 E-value=1.3e-10 Score=100.51 Aligned_cols=58 Identities=12% Similarity=0.269 Sum_probs=47.0
Q ss_pred ccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 10 IEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 10 ~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
|+.++ +++|++ ..+++||| .+.++.+++|.|++|||||||++.|++.+.+ .|...++.
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl---------------~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g 82 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKA---------------YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDG 82 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECC
Confidence 55556 788875 46999999 9999999999999999999999999998753 34444443
No 394
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.08 E-value=3.4e-10 Score=97.51 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=40.1
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcC
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQ 82 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~ 82 (278)
+|+++|| .+.+|.+++|.|++|||||||++.|++.+++.|...++.
T Consensus 11 ~l~~vsl---------------~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g 56 (248)
T PRK03695 11 RLGPLSA---------------EVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAG 56 (248)
T ss_pred eecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECC
Confidence 7999999 999999999999999999999999999876555555544
No 395
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.08 E-value=2.7e-10 Score=108.25 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=84.2
Q ss_pred hccCCc-eeeeC-----C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 9 MIEASS-GVHFS-----G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~~~~-----~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
||+..+ ++.|+ + .+|+++|| .+.+|.+++|.|+||||||||++.|++.+++ .|...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~---------------~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 343 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSL---------------EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 677777 88894 2 46999999 9999999999999999999999999998754 455555
Q ss_pred c-CCCCC--CCCCH---HHHHHccccCCCCCCccc-----------------H----HHHHHHHHHhhcCC-----Cc--
Q 023731 81 N-QDSFY--HNLTE---QELARVHEYNFDHPDAFD-----------------T----EKLLSSMEKLRHGQ-----AV-- 126 (278)
Q Consensus 81 ~-~D~~~--~~~~~---~~~~~~~~~~~~~~~~~d-----------------~----~~~~~~l~~~~~~~-----~i-- 126 (278)
+ ..... ..... ........|.++++..+. . +...+.+..+.... ..
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 423 (520)
T TIGR03269 344 RVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDK 423 (520)
T ss_pred ecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhC
Confidence 3 22110 00110 001111122233221111 0 11222233332221 01
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
....++.+..+++..++..+.+++++++|+|++.+|+..
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~ 462 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 112445555555555566778999999999999998753
No 396
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.07 E-value=2.7e-10 Score=98.93 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=75.6
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC-------CC-CCCCCCH
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ-------DS-FYHNLTE 91 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~-------D~-~~~~~~~ 91 (278)
..|+++|| .+.+|.+++|.|++|||||||++.|++.+++ .|...++. .. +...++.
T Consensus 38 ~il~~is~---------------~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 38 FALDDISL---------------KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTG 102 (264)
T ss_pred EEEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcH
Confidence 36999999 9999999999999999999999999998764 23332222 22 2223344
Q ss_pred HHHHHccccCCCCCCcccHHHHH----HHHHHhhcCCCcc--ccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 92 QELARVHEYNFDHPDAFDTEKLL----SSMEKLRHGQAVD--IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++..+..... .++.+... ..+.....+.... ...++.+..++...++..+.+++++++|+|+..+|+.
T Consensus 103 ~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 103 IENIEFKMLCM----GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 33322211111 12222222 2233222222221 1244555555555556667899999999999999874
No 397
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.07 E-value=2e-09 Score=88.90 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEE
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVL 79 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~ 79 (278)
++|+|.|+.||||||+++.|++.+...|..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v 31 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEV 31 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 4799999999999999999999986444433
No 398
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.2e-10 Score=104.34 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=79.3
Q ss_pred eeeeCC-c-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCC--------
Q 023731 15 GVHFSG-F-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDS-------- 84 (278)
Q Consensus 15 ~~~~~~-~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~-------- 84 (278)
...|+. - .|++||| ++++|..|||+|+|||||||+.|.|-+.+...|-..+++-+
T Consensus 358 ~f~y~~k~~iL~gvsf---------------~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 358 HFSYGPKRKVLKGVSF---------------TIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES 422 (591)
T ss_pred EEEeCCCCceecceeE---------------EecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHH
Confidence 444555 2 5888888 99999999999999999999999999998765555555533
Q ss_pred ------------CCCCCCHHHHHHccccCCCCCCcccHHH--------HHHHHHHhhcCCC--c--cccccCCcCCcCCC
Q 023731 85 ------------FYHNLTEQELARVHEYNFDHPDAFDTEK--------LLSSMEKLRHGQA--V--DIPNYDFKSYKNNV 140 (278)
Q Consensus 85 ------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~~~~l~~~~~~~~--i--~~~~~~~~~~~~~~ 140 (278)
...+-+...+.. ++.+..=+.+. +.+.+..+..|=. + .-...+.++.++..
T Consensus 423 lR~~Ig~VPQd~~LFndTIl~NI~-----YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFNDTILYNIK-----YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred hhhheeEeCCcccccchhHHHHhh-----cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 332222222222 33332222111 1222333322210 0 00133444445555
Q ss_pred CCccccCCCcEEEEcccccCCchH
Q 023731 141 FPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 141 ~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
..+..+.+++++++|++.+.+|.+
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~ 521 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSE 521 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchh
Confidence 556678899999999999988864
No 399
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.06 E-value=1.8e-10 Score=110.31 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHHccccCCCCCC------------cccH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYNFDHPD------------AFDT 110 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~------------~~d~ 110 (278)
.+++|.+++|+|+||||||||++.|++.+.| .|...++..+. ...+.........+.++++. ....
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~ 442 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAV-SADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASL 442 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC-CCCCHHHHHhhCcEEccChhhhhhhhhcccccchhH
Confidence 9999999999999999999999999998875 45555554332 22222222221122222111 1122
Q ss_pred HHHHHHHHHhhcCCCcc-c-------cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 111 EKLLSSMEKLRHGQAVD-I-------PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 111 ~~~~~~l~~~~~~~~i~-~-------~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+.+.+.++.......+. . ..++.+..+|...++..+.+++++++|++.+.+|++
T Consensus 443 ~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~ 504 (555)
T TIGR01194 443 DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPA 504 (555)
T ss_pred HHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 33444444443322221 1 124444445555566778899999999999998875
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.06 E-value=5.2e-10 Score=91.15 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEcCCCCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--VVLVNQDSFY 86 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~--~~~i~~D~~~ 86 (278)
+++.+|+|+|++||||||+++.|++.+...+ +.+++.|.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4678999999999999999999999985333 6778888653
No 401
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.1e-10 Score=91.27 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=88.8
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCC
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSF 85 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~D~~ 85 (278)
|+++.+ ...=+. ..+.+++| ....+..+-|.||+|||||||.|.|++.+.|. |-..+.....
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f---------------~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i 66 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSF---------------TLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPI 66 (209)
T ss_pred cchhhhhhhccCcceeecceeE---------------EEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCC
Confidence 455666 444455 56999999 99999999999999999999999999998753 3333332221
Q ss_pred C--------------------CCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcC--CcCCCCCc
Q 023731 86 Y--------------------HNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKS--YKNNVFPA 143 (278)
Q Consensus 86 ~--------------------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~ 143 (278)
- .+++..++..|-....+ ..+.+...+.+..+...+....|....+. ..|+..++
T Consensus 67 ~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~---~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlAr 143 (209)
T COG4133 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHG---SGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALAR 143 (209)
T ss_pred ccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhC---CCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHH
Confidence 1 11222222221111111 12334556667766665555556444444 44555555
Q ss_pred cccCCCcEEEEcccccCCchHHh
Q 023731 144 RRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 144 ~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
..+.+.+++|+|+|++..|+.-.
T Consensus 144 L~ls~~pLWiLDEP~taLDk~g~ 166 (209)
T COG4133 144 LWLSPAPLWILDEPFTALDKEGV 166 (209)
T ss_pred HHcCCCCceeecCcccccCHHHH
Confidence 66789999999999999887533
No 402
>PRK14527 adenylate kinase; Provisional
Probab=99.06 E-value=8.8e-10 Score=91.15 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
..++++|+|.|++||||||+|+.|++.+ ++..++.++.+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~---~~~~is~gd~~ 41 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQEL---GLKKLSTGDIL 41 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHh---CCCCCCccHHH
Confidence 4578899999999999999999999988 47777776655
No 403
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.06 E-value=5.3e-11 Score=118.71 Aligned_cols=115 Identities=18% Similarity=0.218 Sum_probs=73.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC--------------------CCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY--------------------HNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~--------------------~~~~~~~~~~~~~~~~ 102 (278)
.++.|..|+|.|+|||||||+.+.|++.++| .|..++++.+.. ...+..++.. |
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~-----~ 449 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIR-----Y 449 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHh-----c
Confidence 9999999999999999999999999999986 455666664432 2222222222 3
Q ss_pred CCCCcccHHHHHH---------HHHHhhcCCCc----cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLS---------SMEKLRHGQAV----DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~---------~l~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+.|++ ..+.+.+ .+..+..|-.. .-+..+.+..+|.+.++..+.+|+++++|++++.+|++
T Consensus 450 G~~da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~ 523 (1228)
T KOG0055|consen 450 GKPDA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 523 (1228)
T ss_pred CCCcc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH
Confidence 33221 1122222 22233222111 11345556666766777788999999999999998874
No 404
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.06 E-value=1.4e-10 Score=111.72 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=70.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--------------------EEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------------------~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
.+++|..++|+|+||||||||++.|++.+++ .| +.++.+|.+....+..++..++
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~---- 432 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLG---- 432 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcC----
Confidence 8999999999999999999999999998865 23 3344555444333444433322
Q ss_pred CCCCcccHHHHHHHHH---------HhhcCCC--ccc--cccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 103 DHPDAFDTEKLLSSME---------KLRHGQA--VDI--PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~---------~~~~~~~--i~~--~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+. ...+.+.+.++ .+..|-. +.. ..++.+..++...++..+.+++++++|+|++.+|+.
T Consensus 433 -~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~ 505 (585)
T TIGR01192 433 -REG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505 (585)
T ss_pred -CCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 111 12222322222 2211111 111 134444455555566778899999999999998875
No 405
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.1e-11 Score=108.01 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=84.9
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHH----
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELAR---- 96 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~---- 96 (278)
.++||+|++++...|....-.....+|..|+|.|+|||||||+++.|++.+++ +|...++.-+..+ +......+
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~-l~~~~~~e~i~v 416 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS-LDEQALRETISV 416 (573)
T ss_pred eeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh-CChhhHHHHHhh
Confidence 46666666666665666666669999999999999999999999999998875 3444444433221 11110000
Q ss_pred ------------ccccCCCCCCcccHHHHHHHHHHhhcCCCc-------------cccccCCcCCcCCCCCccccCCCcE
Q 023731 97 ------------VHEYNFDHPDAFDTEKLLSSMEKLRHGQAV-------------DIPNYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 97 ------------~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i-------------~~~~~~~~~~~~~~~~~~~~~~~~i 151 (278)
..+.-...|++=| +.+.+.+++....+.+ .-..++.++.+|....+..+.+.++
T Consensus 417 l~Qr~hlF~~Tlr~NL~lA~~~AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl 495 (573)
T COG4987 417 LTQRVHLFSGTLRDNLRLANPDASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495 (573)
T ss_pred hccchHHHHHHHHHHHhhcCCCCCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe
Confidence 0111233344322 3333333332221110 0124455555666666777889999
Q ss_pred EEEcccccCCchH
Q 023731 152 ILLEGILVFHDSR 164 (278)
Q Consensus 152 iiidg~~~~~d~~ 164 (278)
+++|+|..++|+.
T Consensus 496 ~lLDEPTegLD~~ 508 (573)
T COG4987 496 WLLDEPTEGLDPI 508 (573)
T ss_pred EEecCCcccCChh
Confidence 9999999999874
No 406
>PRK14532 adenylate kinase; Provisional
Probab=99.05 E-value=1.2e-09 Score=89.96 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~ 88 (278)
.|.|.|++||||||+|+.|++.+ ++.+++.++..+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~---g~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER---GMVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEEeCcHHHHH
Confidence 48899999999999999999998 5899999887643
No 407
>PRK13808 adenylate kinase; Provisional
Probab=99.05 E-value=9.4e-10 Score=97.54 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.|.|.||+||||||+++.|++.+ ++.+++.+++++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y---gl~~is~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY---GIVQLSTGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCceecccHHHH
Confidence 48899999999999999999998 588999887663
No 408
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.04 E-value=3.4e-10 Score=95.55 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=44.0
Q ss_pred ceeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcC
Q 023731 14 SGVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQ 82 (278)
Q Consensus 14 ~~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~ 82 (278)
....|++ ..++++|| .+.++.+++|.|++|||||||++.|++.+.+ .|...++.
T Consensus 6 ~~~~~~~~~~il~~vs~---------------~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 62 (218)
T cd03290 6 GYFSWGSGLATLSNINI---------------RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSN 62 (218)
T ss_pred eEEecCCCCcceeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 3677864 46999999 9999999999999999999999999998753 34444433
No 409
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.04 E-value=2.7e-10 Score=92.96 Aligned_cols=99 Identities=16% Similarity=0.138 Sum_probs=68.4
Q ss_pred ceeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCH
Q 023731 14 SGVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTE 91 (278)
Q Consensus 14 ~~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~ 91 (278)
..+.|++. .++++ + .+.++.+++|.|++|||||||++.|++.+.+ .|...++...
T Consensus 6 l~~~~~~~~~l~~~-~---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------- 62 (177)
T cd03222 6 CVKRYGVFFLLVEL-G---------------VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------- 62 (177)
T ss_pred eEEEECCEEEEccC-c---------------EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------
Confidence 37889885 47764 7 7899999999999999999999999998764 3333333211
Q ss_pred HHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 92 QELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
..+.++. +.++.+..++....+..+.+++++++|+|.+.+|+..
T Consensus 63 ------i~~~~q~------------------------~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 63 ------PVYKPQY------------------------IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred ------EEEEccc------------------------CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 0111111 0134444455555566678899999999999998753
No 410
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.04 E-value=1.8e-10 Score=96.96 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=73.5
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEE-EcCCC--------CCCCCCH
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVL-VNQDS--------FYHNLTE 91 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~-i~~D~--------~~~~~~~ 91 (278)
.|+|||| .+.++.+++|.|++|||||||++.|++.+.+ .|-.. ++... ++..++.
T Consensus 2 vl~~vs~---------------~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv 66 (213)
T PRK15177 2 VLDKTDF---------------VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTG 66 (213)
T ss_pred eeeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcH
Confidence 5899999 9999999999999999999999999998753 23332 33221 2233344
Q ss_pred HHHHHccccCCCCCCcccHHHHHHHHHHh---hcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 92 QELARVHEYNFDHPDAFDTEKLLSSMEKL---RHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 92 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.++..+....++ .+.....+.+... ..........++.+..++....+..+.+++++++|+|....|+.
T Consensus 67 ~enl~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 67 EENARMMASLYG----LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 443332111111 1112222222111 11011122355556666655556677899999999998776764
No 411
>PLN03211 ABC transporter G-25; Provisional
Probab=99.04 E-value=7.5e-10 Score=107.66 Aligned_cols=134 Identities=15% Similarity=0.150 Sum_probs=86.5
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CC--------------
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QR-------------- 76 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---~~-------------- 76 (278)
.+.|++ ..|+|||+ ...+|.+++|.||||||||||.+.|++.+.+ .|
T Consensus 75 ~~~~~~~~iL~~vs~---------------~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~ 139 (659)
T PLN03211 75 TRQIQERTILNGVTG---------------MASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139 (659)
T ss_pred cccCCCCeeeeCCEE---------------EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhc
Confidence 457776 57999999 9999999999999999999999999998754 22
Q ss_pred --EEEEcCCCCC-CCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCC-------ccccccCCcCCcCCCCC
Q 023731 77 --VVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQA-------VDIPNYDFKSYKNNVFP 142 (278)
Q Consensus 77 --~~~i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~-------i~~~~~~~~~~~~~~~~ 142 (278)
+.++.+++.. ..++..++..+... ...+..... +...+.++.+..... .....++.+..+|....
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSL-LRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 3344444333 34555555443321 111111111 223344444433211 01234666666666666
Q ss_pred ccccCCCcEEEEcccccCCchH
Q 023731 143 ARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 143 ~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+.+++++++|+|.+++|+.
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHH
Confidence 6778899999999999999974
No 412
>PLN03130 ABC transporter C family member; Provisional
Probab=99.04 E-value=9e-11 Score=123.74 Aligned_cols=136 Identities=13% Similarity=0.198 Sum_probs=83.9
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEEE
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLV 80 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~i 80 (278)
.++||+|+|.....|.......++++|..|||+|++|||||||++.|.+.+.+ ..+.++
T Consensus 1239 ~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1318 (1622)
T PLN03130 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGII 1318 (1622)
T ss_pred EEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEE
Confidence 35555555543333444444449999999999999999999999999998864 235566
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCCccc----cccCCcCCcCCCCCccccC
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~i~~----~~~~~~~~~~~~~~~~~~~ 147 (278)
++|.+...-+.+++...+. ....+.+.+.++... .|-...+ ..++.+..++...++..+.
T Consensus 1319 pQdp~LF~GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1319 PQAPVLFSGTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred CCCCccccccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 6666664445544443211 123344444444322 1211111 1233344444455667788
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+++++|+|++.+..|.+
T Consensus 1392 ~p~ILILDEATSaLD~~ 1408 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVR 1408 (1622)
T ss_pred CCCEEEEECCCCCCCHH
Confidence 99999999999998864
No 413
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.04 E-value=1.3e-09 Score=92.20 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred hcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccc-ccccccEEeeCCCCcHHHHHHHHHHHH
Q 023731 168 LMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILP-TKKYADIIIPRGGDNHVAIDLIVQHIR 246 (278)
Q Consensus 168 ~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~aD~iI~n~~~~~~~~~~l~~~I~ 246 (278)
..|++|||+++++.+.+|+.+|+.... ..+...|.......|..++.+ +...+++++-+. +++..++.++..|.
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~~e----~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~ 216 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDPHE----MKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIE 216 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCchh----hcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHH
Confidence 358999999999999999988863221 123344555566666666544 344567655443 45667888888876
Q ss_pred H
Q 023731 247 T 247 (278)
Q Consensus 247 ~ 247 (278)
.
T Consensus 217 ~ 217 (219)
T cd02030 217 Y 217 (219)
T ss_pred c
Confidence 4
No 414
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.04 E-value=4.5e-09 Score=83.31 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~ 88 (278)
+|+|+|++||||||+|+.|++.+ +..+++.|.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~---~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL---GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc---CCEEEeCcccccH
Confidence 58899999999999999999987 4788999988753
No 415
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.04 E-value=4.2e-10 Score=119.28 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=87.5
Q ss_pred hccCCc-eeeeC--C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCC
Q 023731 9 MIEASS-GVHFS--G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQD 83 (278)
Q Consensus 9 ~~~~~~-~~~~~--~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D 83 (278)
+|+..+ ++.|+ + .+|++||| .+.+|.+++|.|++||||||+++.|++.+.| .|...+++.
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl---------------~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~ 992 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNI---------------TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGK 992 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEE---------------EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCE
Confidence 455566 88895 3 57999999 9999999999999999999999999999864 333334332
Q ss_pred C--------------------CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCC
Q 023731 84 S--------------------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVF 141 (278)
Q Consensus 84 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~ 141 (278)
+ ++..++..+...+.....+.+..-..+...+.++.+...... ....++.+..+++..
T Consensus 993 dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 993 DIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred ECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence 2 222233333322211101100000112233344443332211 223555556666666
Q ss_pred CccccCCCcEEEEcccccCCchHHh
Q 023731 142 PARRVNPSDVILLEGILVFHDSRVR 166 (278)
Q Consensus 142 ~~~~~~~~~iiiidg~~~~~d~~~~ 166 (278)
++..+.+++++++|+|.+++|+..+
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr 1097 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSR 1097 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHH
Confidence 6677889999999999999997533
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.03 E-value=1.5e-09 Score=88.71 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+.+|+|.||+||||||+++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 56899999999999999999999764
No 417
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.02 E-value=2.1e-10 Score=89.15 Aligned_cols=135 Identities=14% Similarity=0.220 Sum_probs=82.9
Q ss_pred eeeeCCcc-ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-------------------
Q 023731 15 GVHFSGFH-MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD------------------- 74 (278)
Q Consensus 15 ~~~~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~------------------- 74 (278)
..+.+|.+ |-++|+ ++.++.|+.|.||||||||||...+.+.+.+
T Consensus 9 sl~l~g~cLLa~~n~---------------Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 9 SLRLPGSCLLANVNF---------------TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred eecCCCceEEEeeeE---------------EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 67778877 889999 9999999999999999999999999998753
Q ss_pred ---CCEEEEcCCCCC-CCCCHHHHHHccccCCCCCCcccHH----HHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCcc
Q 023731 75 ---QRVVLVNQDSFY-HNLTEQELARVHEYNFDHPDAFDTE----KLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPAR 144 (278)
Q Consensus 75 ---~~~~~i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~~ 144 (278)
..+.++-+|++. ..++..+ +..|.-|.....+ .....++.....+.. .-| ..+.+...|....+.
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~-----Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~ 148 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQ-----NLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRA 148 (213)
T ss_pred hhhhheeeeeccccccccccccc-----ceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHH
Confidence 122333344433 2222211 1122222222221 223344443332221 112 344444455555566
Q ss_pred ccCCCcEEEEcccccCCchHHhhhc
Q 023731 145 RVNPSDVILLEGILVFHDSRVRELM 169 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~~~~~~ 169 (278)
.+..++.+++|+|++-+|..+++.+
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qf 173 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQF 173 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHH
Confidence 7789999999999998877665443
No 418
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.02 E-value=2e-10 Score=110.31 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=70.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--------------------EEEEcCCCCCCCCCHHHHHHccccCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--------------------VVLVNQDSFYHNLTEQELARVHEYNF 102 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--------------------~~~i~~D~~~~~~~~~~~~~~~~~~~ 102 (278)
++++|..++|+|+||||||||++.|++.++| .| +.++.++.+...-+..++..++
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~---- 412 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG---- 412 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcC----
Confidence 9999999999999999999999999999865 23 2344444444333343333322
Q ss_pred CCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 103 DHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 103 ~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+. ...+.+.+.++. +..|-.... ..++.+..+|...++..+.+++++++|+|++.+|+..
T Consensus 413 -~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 413 -RPD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred -CCC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 111 222333333322 111111100 1233444455555566778999999999999998753
No 419
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.02 E-value=1.6e-09 Score=85.99 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=82.1
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHHcc-
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVH- 98 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~- 98 (278)
.+|++|++ .++++..|+|+|+||||||||.-.|++.-.+ .|-+.+-..+.. .+.......+.
T Consensus 24 ~IL~~V~L---------------~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~-~ldEd~rA~~R~ 87 (228)
T COG4181 24 SILKGVEL---------------VVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLH-KLDEDARAALRA 87 (228)
T ss_pred eEeecceE---------------EecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchh-hcCHHHHHHhhc
Confidence 35999999 9999999999999999999999999997543 233333332222 12222221111
Q ss_pred ---ccCCCCC----------------------CcccHHHHHHHHHHhhcCCCc-ccc-ccCCcCCcCCCCCccccCCCcE
Q 023731 99 ---EYNFDHP----------------------DAFDTEKLLSSMEKLRHGQAV-DIP-NYDFKSYKNNVFPARRVNPSDV 151 (278)
Q Consensus 99 ---~~~~~~~----------------------~~~d~~~~~~~l~~~~~~~~i-~~~-~~~~~~~~~~~~~~~~~~~~~i 151 (278)
.+.|+.. ..-.+....+.|..+..++.. .+| ..+.+..+|+..++.....+++
T Consensus 88 ~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~v 167 (228)
T COG4181 88 RHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDV 167 (228)
T ss_pred cceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCE
Confidence 1112110 111123345566666666543 344 6677777887777777888999
Q ss_pred EEEcccccCCchH
Q 023731 152 ILLEGILVFHDSR 164 (278)
Q Consensus 152 iiidg~~~~~d~~ 164 (278)
++.|+|...+|..
T Consensus 168 LfADEPTGNLD~~ 180 (228)
T COG4181 168 LFADEPTGNLDRA 180 (228)
T ss_pred EeccCCCCCcchh
Confidence 9999999988853
No 420
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.02 E-value=3.4e-10 Score=110.17 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=83.4
Q ss_pred hhccCCc-eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 8 DMIEASS-GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 8 ~~~~~~~-~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
-||+-++ .++|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+++ .|...+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~---------------~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 67 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISL---------------DIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV 67 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 4677777 888952 36999999 9999999999999999999999999999764 233333
Q ss_pred cCCCCCCCCCHHHH----HHccccCCCCCCccc----------------------HHHHHHHHHHhhcCCCccc--cccC
Q 023731 81 NQDSFYHNLTEQEL----ARVHEYNFDHPDAFD----------------------TEKLLSSMEKLRHGQAVDI--PNYD 132 (278)
Q Consensus 81 ~~D~~~~~~~~~~~----~~~~~~~~~~~~~~d----------------------~~~~~~~l~~~~~~~~i~~--~~~~ 132 (278)
+..+... ...... .....+.++++..+. .....+.++.+........ ..++
T Consensus 68 ~g~~i~~-~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS 146 (648)
T PRK10535 68 AGQDVAT-LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLS 146 (648)
T ss_pred CCEEcCc-CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCC
Confidence 3322110 111111 011122222221110 1122233333322221111 2344
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+..++....+..+.+++++++|+|...+|+.
T Consensus 147 ~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~ 178 (648)
T PRK10535 147 GGQQQRVSIARALMNGGQVILADEPTGALDSH 178 (648)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 44445555556677889999999999999974
No 421
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.02 E-value=6.1e-10 Score=89.29 Aligned_cols=146 Identities=18% Similarity=0.288 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH----HHHHHhhcCCCccccccC
Q 023731 57 AASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL----SSMEKLRHGQAVDIPNYD 132 (278)
Q Consensus 57 sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~l~~~~~~~~i~~~~~~ 132 (278)
+||||||+++.|++.| +..+++.|.++..........+ |. ....+.+. +.+..
T Consensus 1 ~GsGKStvg~~lA~~L---~~~fiD~D~~i~~~~g~si~~i----~~---~~G~~~fr~~E~~~l~~------------- 57 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRL---GRPFIDLDDEIEERTGMSISEI----FA---EEGEEAFRELESEALRE------------- 57 (158)
T ss_dssp TTSSHHHHHHHHHHHH---TSEEEEHHHHHHHHHTSHHHHH----HH---HHHHHHHHHHHHHHHHH-------------
T ss_pred CCCcHHHHHHHHHHHh---CCCccccCHHHHHHhCCcHHHH----HH---cCChHHHHHHHHHHHHH-------------
Confidence 6999999999999999 5999999987632211111110 00 00111111 12221
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh---cCeEEEEecChhhhhHHhhhccccccCCCHH---HHHHHHh
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL---MNMKIFVDTDADVRLARRIRRDTVEKGRDIA---TVLDQYS 206 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~---~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~---~~~~~~~ 206 (278)
.......+|..|......++..+. ...+|||+++.+...+|+..+...+.-.... .....+.
T Consensus 58 ------------l~~~~~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~ 125 (158)
T PF01202_consen 58 ------------LLKENNCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF 125 (158)
T ss_dssp ------------HHCSSSEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH
T ss_pred ------------HhccCcEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH
Confidence 122225677777666656655544 3689999999999999998876522111111 1222333
Q ss_pred hccccccccccccccccccEEeeCCCCc-HHHHHHHHHHH
Q 023731 207 KFVKPAFDDFILPTKKYADIIIPRGGDN-HVAIDLIVQHI 245 (278)
Q Consensus 207 ~~~~~~~~~~i~~~~~~aD~iI~n~~~~-~~~~~~l~~~I 245 (278)
...+.| ...+|++++++... +...+++++.|
T Consensus 126 -~R~~~Y-------~~~a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 126 -EREPLY-------EQAADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp -HHHHHH-------HHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred -HHHHHH-------HhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence 344444 46799999988765 34445555544
No 422
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.02 E-value=1.9e-11 Score=95.39 Aligned_cols=121 Identities=16% Similarity=0.233 Sum_probs=71.3
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHHccccC
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELARVHEYN 101 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~~~~~~ 101 (278)
|++|++ .++++.+++|+|++|||||||.+.|++.+.+ .|...++..++.. ...........+.
T Consensus 1 L~~v~~---------------~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~-~~~~~~~~~i~~~ 64 (137)
T PF00005_consen 1 LKNVSL---------------EIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISD-IDIEELRRRIGYV 64 (137)
T ss_dssp EEEEEE---------------EEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTT-SHHHHHHHTEEEE
T ss_pred CCceEE---------------EEcCCCEEEEEccCCCccccceeeecccccccccccccccccccc-ccccccccccccc
Confidence 689999 9999999999999999999999999998753 3445555444332 1122222222222
Q ss_pred CCCCCc---c------cHHHHHHHHHHhhcCC--Cccc----cccCCcCCcCCCCCccccCCCcEEEEccccc
Q 023731 102 FDHPDA---F------DTEKLLSSMEKLRHGQ--AVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILV 159 (278)
Q Consensus 102 ~~~~~~---~------d~~~~~~~l~~~~~~~--~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~ 159 (278)
+..+.. . ......+.+..+.... ...+ ..++.+..++...++..+.+++++++|+|++
T Consensus 65 ~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 65 PQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 222111 1 1123344444443322 1111 2334444444444556678999999999974
No 423
>PLN03232 ABC transporter C family member; Provisional
Probab=99.01 E-value=1.3e-10 Score=122.19 Aligned_cols=135 Identities=13% Similarity=0.216 Sum_probs=82.2
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~i~ 81 (278)
++||+|+|.+...|........+++|..|||+|++|||||||++.|.+.+.+ ..+.+++
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVp 1316 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIP 1316 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEEC
Confidence 5555555543333444444449999999999999999999999999998865 2345666
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---------CCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---------~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+..+-+.+++..... .++.+.+.+.++.... |-...+ ..++.+..++...++..+.+
T Consensus 1317 Qdp~LF~gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1317 QSPVLFSGTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred CCCeeeCccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 666554444444433211 2333444444443221 111111 12333444444555667789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|++.+..|.+
T Consensus 1390 ~~ILILDEATSaLD~~ 1405 (1495)
T PLN03232 1390 SKILVLDEATASVDVR 1405 (1495)
T ss_pred CCEEEEECCcccCCHH
Confidence 9999999999998764
No 424
>PRK14528 adenylate kinase; Provisional
Probab=99.01 E-value=2.7e-09 Score=87.86 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+.|.|.|++||||||+|+.|++.+ ++.+++.++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~---~~~~is~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL---SIPQISTGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCCeeeCCHHH
Confidence 568999999999999999999998 57888888765
No 425
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.01 E-value=4.2e-08 Score=80.04 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.+.+++|+|+|||||||+++.|++.+. ...++.|++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~ 39 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHP 39 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCC
Confidence 367899999999999999999999985 46888888753
No 426
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.00 E-value=1e-08 Score=89.77 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQ 70 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~ 70 (278)
..+.+|+|+|++||||||+++.|+.
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH
Confidence 4567999999999999999999975
No 427
>PLN03073 ABC transporter F family; Provisional
Probab=99.00 E-value=1.1e-09 Score=107.24 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=86.2
Q ss_pred hccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------
Q 023731 9 MIEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~-------- 76 (278)
||+..+ ++.|++ ..|+++|| .+.++.+++|+|++|||||||++.|++.+.+. |
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl---------------~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~ 572 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNF---------------GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV 572 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEE---------------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce
Confidence 566666 888854 47999999 99999999999999999999999999987642 2
Q ss_pred -EEEEcCCCCCCCCCHHHH--HHccccCCCCCCcccHHHHHHHHHHhhcCC-Ccc--ccccCCcCCcCCCCCccccCCCc
Q 023731 77 -VVLVNQDSFYHNLTEQEL--ARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AVD--IPNYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 77 -~~~i~~D~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~i~--~~~~~~~~~~~~~~~~~~~~~~~ 150 (278)
+.++.++.+ ..++.... ..+... + + ....+...+.+..+.... ... ...++.+..+++..++..+.+++
T Consensus 573 ~igyv~Q~~~-~~l~~~~~~~~~~~~~-~--~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 573 RMAVFSQHHV-DGLDLSSNPLLYMMRC-F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred eEEEEecccc-ccCCcchhHHHHHHHh-c--C-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC
Confidence 334444421 11111111 111000 1 1 112334455555554432 111 22455555566656666778999
Q ss_pred EEEEcccccCCchH
Q 023731 151 VILLEGILVFHDSR 164 (278)
Q Consensus 151 iiiidg~~~~~d~~ 164 (278)
++++|+|++.+|+.
T Consensus 648 lLLLDEPT~~LD~~ 661 (718)
T PLN03073 648 ILLLDEPSNHLDLD 661 (718)
T ss_pred EEEEcCCCCCCCHH
Confidence 99999999999875
No 428
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.00 E-value=2.3e-10 Score=100.24 Aligned_cols=127 Identities=13% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC-------EEEEcCCCCCCCCC
Q 023731 19 SGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR-------VVLVNQDSFYHNLT 90 (278)
Q Consensus 19 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~-------~~~i~~D~~~~~~~ 90 (278)
+...|+++|| .+.+|.+++|.|++|||||||++.|++.+++ .| +.++.++.+....+
T Consensus 49 ~~~vL~~vs~---------------~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~t 113 (282)
T cd03291 49 GAPVLKNINL---------------KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGT 113 (282)
T ss_pred cccceeeeeE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccccC
Confidence 3357999999 9999999999999999999999999998764 23 45666665443334
Q ss_pred HHHHHHccccCCCCCCcccHHHH------HHHHHHhhcCCC--c--cccccCCcCCcCCCCCccccCCCcEEEEcccccC
Q 023731 91 EQELARVHEYNFDHPDAFDTEKL------LSSMEKLRHGQA--V--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVF 160 (278)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~d~~~~------~~~l~~~~~~~~--i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~ 160 (278)
..++..+... + ........ .+.+..+..+.. + ....++.+..++...++..+.+++++++|+|++.
T Consensus 114 v~enl~~~~~-~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 114 IKENIIFGVS-Y---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred HHHHhhcccc-c---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 4333322111 0 00000111 111111111100 0 0113444444555555666789999999999999
Q ss_pred CchH
Q 023731 161 HDSR 164 (278)
Q Consensus 161 ~d~~ 164 (278)
+|+.
T Consensus 190 LD~~ 193 (282)
T cd03291 190 LDVF 193 (282)
T ss_pred CCHH
Confidence 9875
No 429
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.00 E-value=1.1e-08 Score=84.67 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQR 76 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~ 76 (278)
+++|+|.|++||||||+++.|++.+...|
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g 31 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENG 31 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 78999999999999999999999986444
No 430
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=8.5e-10 Score=88.26 Aligned_cols=107 Identities=19% Similarity=0.277 Sum_probs=69.8
Q ss_pred eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHH
Q 023731 15 GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 15 ~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~ 92 (278)
.+.|.+ ..+++++| .+.++.+++|.|++|||||||++.|++.+++ .|...++...... ....
T Consensus 6 ~~~~~~~~~l~~~~~---------------~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~-~~~~ 69 (157)
T cd00267 6 SFRYGGRTALDNVSL---------------TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK-LPLE 69 (157)
T ss_pred EEEeCCeeeEeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-CCHH
Confidence 566765 57999999 9999999999999999999999999998754 2333333322110 0000
Q ss_pred HHHHccccCCCCCCcccHHHHHHHHHHhhcCCCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 93 ELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.......+ .+.++.+..++....+..+.+++++++|+|+..+|..
T Consensus 70 ~~~~~i~~---------------------------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 70 ELRRRIGY---------------------------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred HHHhceEE---------------------------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 10010111 1124444444444445566789999999999998864
No 431
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.99 E-value=2.1e-10 Score=112.63 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=79.7
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------------------EEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRV--------------------VLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~--------------------~~i~ 81 (278)
++||+|++.+...|........+++|..++|+|+||||||||++.|++.+.+ .|. .++.
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~ 537 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVL 537 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEc
Confidence 4555555443333333333338999999999999999999999999999865 232 3445
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHH---------hhcCCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEK---------LRHGQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~---------~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+...-+..++..++ ++. .+.+.+.+.++. +..|-.... ..++.+..++...++..+.+
T Consensus 538 q~~~lf~~ti~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 538 QENVLFSRSIRDNIALC-----NPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred cCCeehhhhHHHHHhcC-----CCC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 55444333444433321 121 233333333332 222211111 12333444454555667789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|+|++.+|+.
T Consensus 612 ~~ililDEpts~LD~~ 627 (694)
T TIGR01846 612 PRILIFDEATSALDYE 627 (694)
T ss_pred CCEEEEECCCcCCCHH
Confidence 9999999999999875
No 432
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.98 E-value=5.8e-09 Score=85.76 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=81.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCE--EEEcCCCCCCCCCHHHHHHc-cccCCCCCCcccHHHHHHHHHHhhcCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRV--VLVNQDSFYHNLTEQELARV-HEYNFDHPDAFDTEKLLSSMEKLRHGQ 124 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~--~~i~~D~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~l~~~~~~~ 124 (278)
+++|.|+||+||||+|+++.|...++ .++ ++.+.....+. .... ..|.|- ..+.+ -..+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~-~~~~~~~~~TtR~~r~-----~e~~g~dy~fv-----s~~ef---~~~i~~g~ 67 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIP-DAFERVVSHTTRPPRP-----GEVNGVDYHFV-----SREEF---EDDIKSGL 67 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCC-cceEeeeeecCCCCCC-----CCcCCceEEEC-----CHHHH---HHHHHcCC
Confidence 56899999999999999999999863 122 22111111100 0000 012221 11222 23333444
Q ss_pred CccccccCCcCCcCC-CCCccccCCCcEEEEcccccCCchHHhh-hcC-eEEEEecCh-hhhhHHhhhccccccCCCHHH
Q 023731 125 AVDIPNYDFKSYKNN-VFPARRVNPSDVILLEGILVFHDSRVRE-LMN-MKIFVDTDA-DVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~-~~~~~~~~~~~iiiidg~~~~~d~~~~~-~~d-~~I~l~~~~-e~~~~R~~~R~~~~~~~~~~~ 200 (278)
.+....+......-. ......+.....+|+|...... ..+.. ..+ .+|||.++. +...+|+.+|... +.+.
T Consensus 68 fve~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~----~~~~ 142 (184)
T smart00072 68 FLEWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRGRGTE----TAER 142 (184)
T ss_pred eEEEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCC----CHHH
Confidence 444333322111111 0111223456778888765443 33332 233 899998555 4566666666421 2223
Q ss_pred HHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHH
Q 023731 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHI 245 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I 245 (278)
+.++...... .. . ....+|++|.|+ +.+.+.+++.+.|
T Consensus 143 i~~rl~~a~~-~~----~-~~~~fd~~I~n~-~l~~~~~~l~~~i 180 (184)
T smart00072 143 IQKRLAAAQK-EA----Q-EYHLFDYVIVND-DLEDAYEELKEIL 180 (184)
T ss_pred HHHHHHHHHH-HH----h-hhccCCEEEECc-CHHHHHHHHHHHH
Confidence 3332222100 00 1 125589999987 4334444444444
No 433
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.98 E-value=8.7e-10 Score=98.23 Aligned_cols=128 Identities=18% Similarity=0.316 Sum_probs=87.3
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCH---HHHHHcc
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTE---QELARVH 98 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~---~~~~~~~ 98 (278)
++++||| +..++..+||+|-|||||||+..+|.+.+.+.|...+.+.++- .++. .+.....
T Consensus 302 AVd~isl---------------~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~-~~~~~~mrplR~~m 365 (534)
T COG4172 302 AVDGISL---------------TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID-GLSRKEMRPLRRRM 365 (534)
T ss_pred Eecccee---------------EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc-ccChhhhhhhhhhc
Confidence 5999999 9999999999999999999999999999987766555554432 1222 2223333
Q ss_pred ccCCCCCC-ccc----------------------H---HHHHHHHHHhhcCCCc--ccc-ccCCcCCcCCCCCccccCCC
Q 023731 99 EYNFDHPD-AFD----------------------T---EKLLSSMEKLRHGQAV--DIP-NYDFKSYKNNVFPARRVNPS 149 (278)
Q Consensus 99 ~~~~~~~~-~~d----------------------~---~~~~~~l~~~~~~~~i--~~~-~~~~~~~~~~~~~~~~~~~~ 149 (278)
...|++|- .++ . ++..+.|++....... .+| .|+.+..+|...++..+-++
T Consensus 366 QvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP 445 (534)
T COG4172 366 QVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKP 445 (534)
T ss_pred eEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCC
Confidence 44555542 111 1 2233444444333222 445 77777777777777788899
Q ss_pred cEEEEcccccCCchHH
Q 023731 150 DVILLEGILVFHDSRV 165 (278)
Q Consensus 150 ~iiiidg~~~~~d~~~ 165 (278)
.++++|+|.+.+|..+
T Consensus 446 ~~i~LDEPTSALD~SV 461 (534)
T COG4172 446 ELILLDEPTSALDRSV 461 (534)
T ss_pred cEEEecCCchHhhHHH
Confidence 9999999999887543
No 434
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.98 E-value=1.7e-09 Score=74.28 Aligned_cols=23 Identities=43% Similarity=0.804 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQL 72 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l 72 (278)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 435
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1e-09 Score=87.39 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=87.3
Q ss_pred ccCCc-eeeeCCc-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcC-CCC
Q 023731 10 IEASS-GVHFSGF-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQ-DSF 85 (278)
Q Consensus 10 ~~~~~-~~~~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~-D~~ 85 (278)
+.-+. ++.|++- -.++||| ...++.+.+|.|-||||||||.++|+..+.|. |.....+ +.-
T Consensus 7 L~V~~lsk~Yg~~~gc~~vsF---------------~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~ 71 (258)
T COG4107 7 LSVSGLSKLYGPGKGCRDVSF---------------DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ 71 (258)
T ss_pred eeehhhhhhhCCCcCccccce---------------eecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCC
Confidence 33444 8899994 5999999 99999999999999999999999999999752 3333333 222
Q ss_pred CCC---CCHHHHHHcc--ccCCCCCCccc-----------------------H----HHHHHHHHHhhcCCC-c-ccc-c
Q 023731 86 YHN---LTEQELARVH--EYNFDHPDAFD-----------------------T----EKLLSSMEKLRHGQA-V-DIP-N 130 (278)
Q Consensus 86 ~~~---~~~~~~~~~~--~~~~~~~~~~d-----------------------~----~~~~~~l~~~~~~~~-i-~~~-~ 130 (278)
..+ ++..+...+. ++.|-+.+..| + ....+.++..+.... + ..| .
T Consensus 72 ~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~Prt 151 (258)
T COG4107 72 PRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT 151 (258)
T ss_pred chhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccc
Confidence 211 2222222222 22222211111 1 122233443333211 1 224 6
Q ss_pred cCCcCCcCCCCCccccCCCcEEEEcccccCCch
Q 023731 131 YDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
|+.+..++...++..+..++.+++|+|..++|-
T Consensus 152 FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDV 184 (258)
T COG4107 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184 (258)
T ss_pred cchHHHHHHHHHHHhccCCceEEecCCCCCcch
Confidence 777777777667778899999999999999875
No 436
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.97 E-value=2.8e-10 Score=87.34 Aligned_cols=110 Identities=23% Similarity=0.400 Sum_probs=59.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEc---CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVN---QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 51 I~I~G~sGsGKTTla~~L~~~l~~~~~~~i~---~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
|+|+|++||||||+|+.|++.+. ..+.+ .+..... ............++.+.....+..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 66 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG---DIIRDIAPEEDIVDS-------IDDNPDWKENKRLDMEFQDELLDSIIQA---- 66 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC---HHHHHHHHHTTSHSS-------HCCHHCCCCCCCSCHHHHHHHHHHHHHH----
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---cHHHHHHHhcCCccc-------ccccchhhhhhhhhhhhHHHHHHHHHHh----
Confidence 78999999999999999999861 00000 0000000 0000011222334444444444333220
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeE-EEEecChhhhhHHhhhccc
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMK-IFVDTDADVRLARRIRRDT 191 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~-I~l~~~~e~~~~R~~~R~~ 191 (278)
.........+|+|+...... ........ |||+|+.+++.+|+.+|..
T Consensus 67 ---------------~~~~~~~~~~iid~~~~~~~--~~~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 67 ---------------IRRMNKGRNIIIDGILSNLE--LERLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp ---------------HHHHTTTSCEEEEESSEEEC--ETTEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred ---------------hcccccCCcEEEecccchhc--ccccceeeEEEEECCHHHHHHHHHhCCC
Confidence 00234556688999876542 22223334 9999999999999999864
No 437
>PRK13973 thymidylate kinase; Provisional
Probab=98.97 E-value=1.2e-08 Score=85.94 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=28.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEc
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVN 81 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~ 81 (278)
|++|+|.|+.||||||.++.|++.|...|..++.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~ 36 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV 36 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 7899999999999999999999999655554443
No 438
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.96 E-value=2e-09 Score=100.30 Aligned_cols=160 Identities=14% Similarity=0.238 Sum_probs=99.5
Q ss_pred hccCCc-eeeeCCc-----cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-----CE
Q 023731 9 MIEASS-GVHFSGF-----HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-----RV 77 (278)
Q Consensus 9 ~~~~~~-~~~~~~~-----~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-----~~ 77 (278)
|++=+| ++.|... +++|||| .+.+|.++||.|-|||||||+++.|.+.+++. |-
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf---------------~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~ 69 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSF---------------EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGE 69 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceE---------------EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceE
Confidence 455556 7777763 6999999 99999999999999999999999999998753 34
Q ss_pred EEEcCCCCCCCCCHHHHHH----ccccCCCCCC-ccc------------------------HHHHHHHHHHhhcCCCc--
Q 023731 78 VLVNQDSFYHNLTEQELAR----VHEYNFDHPD-AFD------------------------TEKLLSSMEKLRHGQAV-- 126 (278)
Q Consensus 78 ~~i~~D~~~~~~~~~~~~~----~~~~~~~~~~-~~d------------------------~~~~~~~l~~~~~~~~i-- 126 (278)
..++..+.. .++..+... ...+.|++|- .++ .++..+.|+........
T Consensus 70 I~~~g~dl~-~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 70 VILDGRDLL-GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred EEECCcchh-cCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh
Confidence 444443322 233333221 1233455431 122 12223333333332211
Q ss_pred -ccc-ccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhh-----------cC-eEEEEecChhhhhH
Q 023731 127 -DIP-NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVREL-----------MN-MKIFVDTDADVRLA 184 (278)
Q Consensus 127 -~~~-~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~-----------~d-~~I~l~~~~e~~~~ 184 (278)
.+| .++.+..+|...++....+++++|.|+|+..+|...... .+ -.+|+..+..+..+
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAE 220 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHH
Confidence 134 555566666655566778999999999999998643311 12 46777777766443
No 439
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.96 E-value=1.8e-09 Score=102.42 Aligned_cols=129 Identities=10% Similarity=0.066 Sum_probs=75.7
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC---------------
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF--------------- 85 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~--------------- 85 (278)
.|++||| .+.++.+++|.|++|||||||++.|++.+.+ .|...++..+.
T Consensus 278 ~l~~isl---------------~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 342 (510)
T PRK15439 278 GFRNISL---------------EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVY 342 (510)
T ss_pred CccceeE---------------EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEE
Confidence 5899999 9999999999999999999999999998754 33333333221
Q ss_pred ----------CCCCCHHHHHHcc---ccCCCCCCcccHHHHHHHHHHhhcC-CCcc--ccccCCcCCcCCCCCccccCCC
Q 023731 86 ----------YHNLTEQELARVH---EYNFDHPDAFDTEKLLSSMEKLRHG-QAVD--IPNYDFKSYKNNVFPARRVNPS 149 (278)
Q Consensus 86 ----------~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~l~~~~~~-~~i~--~~~~~~~~~~~~~~~~~~~~~~ 149 (278)
+..++...+.... ...+.....-..+...+.+..+... .... ...++.+..+++..++..+.++
T Consensus 343 v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p 422 (510)
T PRK15439 343 LPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASP 422 (510)
T ss_pred CCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCC
Confidence 1111211111000 0000000000111233444444332 2222 2355666666666666677899
Q ss_pred cEEEEcccccCCchHH
Q 023731 150 DVILLEGILVFHDSRV 165 (278)
Q Consensus 150 ~iiiidg~~~~~d~~~ 165 (278)
+++++|+|++.+|+..
T Consensus 423 ~lLlLDEPt~gLD~~~ 438 (510)
T PRK15439 423 QLLIVDEPTRGVDVSA 438 (510)
T ss_pred CEEEECCCCcCcChhH
Confidence 9999999999998743
No 440
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.96 E-value=1.8e-09 Score=88.03 Aligned_cols=110 Identities=10% Similarity=0.085 Sum_probs=66.8
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCC-CCCCCCCHHHHHHccc
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD-SFYHNLTEQELARVHE 99 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D-~~~~~~~~~~~~~~~~ 99 (278)
.+|+++|| +..++.+++|.||||||||||.+.+.. ..+-..+... ..+. .... .
T Consensus 9 ~~l~~isl---------------~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~~------~~~~-~ 63 (176)
T cd03238 9 HNLQNLDV---------------SIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKFS------RNKL-I 63 (176)
T ss_pred eeecceEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccccc------cccE-E
Confidence 46999999 999999999999999999999999853 1233333321 1110 0000 0
Q ss_pred cCCCCCCcccHHHHHHHHHHhhcCCC-cc--ccccCCcCCcCCCCCccccCC--CcEEEEcccccCCchHH
Q 023731 100 YNFDHPDAFDTEKLLSSMEKLRHGQA-VD--IPNYDFKSYKNNVFPARRVNP--SDVILLEGILVFHDSRV 165 (278)
Q Consensus 100 ~~~~~~~~~d~~~~~~~l~~~~~~~~-i~--~~~~~~~~~~~~~~~~~~~~~--~~iiiidg~~~~~d~~~ 165 (278)
+.+ . .+.+..+..+.. .. ...++.+..++....+..+.+ ++++++|+|+..+|+..
T Consensus 64 ~~~--------q--~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 64 FID--------Q--LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred EEh--------H--HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 111 1 334444443221 11 123444444454444556677 99999999999998753
No 441
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.95 E-value=4.6e-10 Score=117.47 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=42.9
Q ss_pred ccccceeeecccCC-CCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 21 FHMDGLEVRNKETG-QPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 21 ~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
..++||+|+|..+. .|........+++|..+||+|+||||||||++.|.+.+++
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 34667777665442 3555555559999999999999999999999999999985
No 442
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.9e-09 Score=93.93 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=83.3
Q ss_pred eeeeCC-----ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC------CEEEEcCC
Q 023731 15 GVHFSG-----FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ------RVVLVNQD 83 (278)
Q Consensus 15 ~~~~~~-----~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~------~~~~i~~D 83 (278)
.+.|.. .+++|||| .++++.++||+|-|||||||+++.+.+.++.. |-..++..
T Consensus 8 ~v~f~~~~g~v~av~~vs~---------------~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 8 SVSFPTDAGVVKAVDGVSF---------------ELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred EEEEecCCccEEEEeceeE---------------EEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 666654 36999999 99999999999999999999999999999732 22334444
Q ss_pred CCCCCCCHHHHHH----ccccCCCCCC-cccH-----H--------------------HHHHHHHHhhcCCC----cccc
Q 023731 84 SFYHNLTEQELAR----VHEYNFDHPD-AFDT-----E--------------------KLLSSMEKLRHGQA----VDIP 129 (278)
Q Consensus 84 ~~~~~~~~~~~~~----~~~~~~~~~~-~~d~-----~--------------------~~~~~l~~~~~~~~----i~~~ 129 (278)
+.. .++..+... ...+.|++|- ++|. + ...+.|+.+..... -.+|
T Consensus 73 ~l~-~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 73 DLL-SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred ccc-cCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 332 244333222 2244566542 2221 1 12222332222221 1334
Q ss_pred -ccCCcCCcCCCCCccccCCCcEEEEcccccCCch
Q 023731 130 -NYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 130 -~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
.++.+..+|+..+......++++|.|+|+..+|.
T Consensus 152 helSGGMrQRV~IAmala~~P~LlIADEPTTALDv 186 (316)
T COG0444 152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186 (316)
T ss_pred cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhH
Confidence 5555666666555566789999999999999885
No 443
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.4e-09 Score=102.94 Aligned_cols=129 Identities=10% Similarity=0.082 Sum_probs=76.7
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC----------------
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS---------------- 84 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~---------------- 84 (278)
.++++|| .+.+|.+++|+|++|||||||.+.|++.+++ .|...++..+
T Consensus 268 ~l~~isl---------------~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 268 LREPISF---------------SVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred cccceeE---------------EEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 6899999 9999999999999999999999999998753 2334443321
Q ss_pred ---------CCCCCCHHHHHHccccCCCCC-C-----cccHHHHHHHHHHhhcC-CCccc--cccCCcCCcCCCCCcccc
Q 023731 85 ---------FYHNLTEQELARVHEYNFDHP-D-----AFDTEKLLSSMEKLRHG-QAVDI--PNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 85 ---------~~~~~~~~~~~~~~~~~~~~~-~-----~~d~~~~~~~l~~~~~~-~~i~~--~~~~~~~~~~~~~~~~~~ 146 (278)
++..++..++..++....... . ....+...+.+..+... ..... ..++.+..+++..++..+
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 122222222211111000000 0 00112233445544432 12222 255555556665666677
Q ss_pred CCCcEEEEcccccCCchHH
Q 023731 147 NPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~~ 165 (278)
.+++++++|+|++.+|...
T Consensus 413 ~~p~lllLDEPt~~LD~~~ 431 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGA 431 (501)
T ss_pred cCCCEEEEcCCCCCCCHhH
Confidence 8999999999999998743
No 444
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.95 E-value=5.5e-10 Score=94.76 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=74.7
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE-cCCCCCCCCCHH-HH-HHc
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV-NQDSFYHNLTEQ-EL-ARV 97 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i-~~D~~~~~~~~~-~~-~~~ 97 (278)
++.|||| .+++|.++++.|++||||||+.|+|.+.+.| .|.+-+ ..++|-+..... .. ..+
T Consensus 39 AVqdisf---------------~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~ 103 (325)
T COG4586 39 AVQDISF---------------EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM 103 (325)
T ss_pred hhheeee---------------ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHh
Confidence 5899999 9999999999999999999999999998864 344333 335544221100 00 011
Q ss_pred c---ccCCCCCCc-----------ccHHHHHHHH----HHhhcCCCccccc--cCCcCCcCCCCCccccCCCcEEEEccc
Q 023731 98 H---EYNFDHPDA-----------FDTEKLLSSM----EKLRHGQAVDIPN--YDFKSYKNNVFPARRVNPSDVILLEGI 157 (278)
Q Consensus 98 ~---~~~~~~~~~-----------~d~~~~~~~l----~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~iiiidg~ 157 (278)
+ ...|+.|.. ...+.+.+.+ +.+...+.+..|. .+.+...+...+...+.+++++++|+|
T Consensus 104 gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp 183 (325)
T COG4586 104 GQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP 183 (325)
T ss_pred hhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence 1 112333311 1122333332 2222333344443 333333333444556789999999999
Q ss_pred ccCCch
Q 023731 158 LVFHDS 163 (278)
Q Consensus 158 ~~~~d~ 163 (278)
..++|-
T Consensus 184 TvgLDV 189 (325)
T COG4586 184 TVGLDV 189 (325)
T ss_pred ccCcch
Confidence 999874
No 445
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=6.2e-10 Score=111.23 Aligned_cols=176 Identities=15% Similarity=0.221 Sum_probs=102.6
Q ss_pred ccccceeeecccCCC-CchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCC--------------
Q 023731 21 FHMDGLEVRNKETGQ-PTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDS-------------- 84 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~-------------- 84 (278)
-.++||+|+|-.|-- |--..---++..|..+||+|||||||||+..+|.+.++| .|...++..+
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 346666665554432 333333338999999999999999999999999999975 4455565443
Q ss_pred ------CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhh---------cCCCccc----cccCCcCCcCCCCCccc
Q 023731 85 ------FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLR---------HGQAVDI----PNYDFKSYKNNVFPARR 145 (278)
Q Consensus 85 ------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~~~i~~----~~~~~~~~~~~~~~~~~ 145 (278)
....-+.+++.. |+... ...+.+.++.+... +|=+... ..++.+..+|.+.++..
T Consensus 1068 lVsQEP~LF~~TIrENI~-----YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1068 LVSQEPVLFNGTIRENIA-----YGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred eeccCchhhcccHHHHHh-----ccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 222223333333 33222 34444444433222 2211111 12333334455556677
Q ss_pred cCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhcccccccccccccccccc
Q 023731 146 VNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKFVKPAFDDFILPTKKYAD 225 (278)
Q Consensus 146 ~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD 225 (278)
+.+|+++++|+..+.+|. ..|...+..+.| ...+++.-.+.++... .++||
T Consensus 1142 lRnPkILLLDEATSALDs--------------eSErvVQeALd~--a~~gRT~IvIAHRLST-------------IqnaD 1192 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDS--------------ESERVVQEALDR--AMEGRTTIVIAHRLST-------------IQNAD 1192 (1228)
T ss_pred HcCCCeeeeeccchhhhh--------------hhHHHHHHHHHH--hhcCCcEEEEecchhh-------------hhcCC
Confidence 899999999999998765 334444444444 3445555555566554 78899
Q ss_pred EE--eeCC
Q 023731 226 II--IPRG 231 (278)
Q Consensus 226 ~i--I~n~ 231 (278)
.| ++|+
T Consensus 1193 ~I~Vi~~G 1200 (1228)
T KOG0055|consen 1193 VIAVLKNG 1200 (1228)
T ss_pred EEEEEECC
Confidence 54 4454
No 446
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.95 E-value=3.4e-09 Score=89.77 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC---------------EEEEcCCCCC-C--CCCHHHHHHccccC---
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR---------------VVLVNQDSFY-H--NLTEQELARVHEYN--- 101 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~---------------~~~i~~D~~~-~--~~~~~~~~~~~~~~--- 101 (278)
.+.+|.+++|.|++|||||||++.|++.+.+ .| +.++.++..+ . ..+..++..+....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~ 81 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIG 81 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccc
Confidence 4678999999999999999999999998753 22 3333333211 1 12222222211100
Q ss_pred -CCCCCcccHHHHHHHHHHhhcCCCc--cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 102 -FDHPDAFDTEKLLSSMEKLRHGQAV--DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 102 -~~~~~~~d~~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
+..+...+.+.+.+.++.+...... ....++.+..++....+..+.+++++++|+|++.+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 82 WLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred cccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1001111223344455554433222 22345555556666666778899999999999999874
No 447
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=102.47 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=95.6
Q ss_pred hccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--------C--C
Q 023731 9 MIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD--------Q--R 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~--------~--~ 76 (278)
||..++ ++.|++ ..|+++++ ...++..|||+|.+|||||||.+.|++.+.+ . .
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l---------------~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~ 67 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSL---------------TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLR 67 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcc---------------eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCce
Confidence 566666 999988 56999999 9999999999999999999999999998743 1 3
Q ss_pred EEEEcCCCCCCC-CCHHHHHH------------ccccC-----------------CCCCCcccHH-HHHHHHHHhhcCC-
Q 023731 77 VVLVNQDSFYHN-LTEQELAR------------VHEYN-----------------FDHPDAFDTE-KLLSSMEKLRHGQ- 124 (278)
Q Consensus 77 ~~~i~~D~~~~~-~~~~~~~~------------~~~~~-----------------~~~~~~~d~~-~~~~~l~~~~~~~- 124 (278)
+.+++++..... .+...... +.... +...+.|+.+ .....+..+....
T Consensus 68 v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 677777755532 22211100 00000 0001112222 2222233332222
Q ss_pred CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHh--------hhcCeEEEEecChh
Q 023731 125 AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVR--------ELMNMKIFVDTDAD 180 (278)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~--------~~~d~~I~l~~~~e 180 (278)
...+..++.+...|+..++..+.+++++++|+|...+|.+-. ..-+.+|.|.++..
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~ 211 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRY 211 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 112234555555566666777899999999999998885322 33355666665533
No 448
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.94 E-value=4.9e-10 Score=118.02 Aligned_cols=135 Identities=10% Similarity=0.128 Sum_probs=82.0
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~i~ 81 (278)
++||+|+|.+...|.......++++|..|||+|++|||||||++.|.+.+.+ ..+.+++
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVp 1366 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIP 1366 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEEC
Confidence 4444444443333333333349999999999999999999999999998864 2355666
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---------CCCccc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---------~~~i~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+...-+.+++... |+ .+..+.+.+.++.... |-...+ ..++.+..++...++..+.+
T Consensus 1367 Qdp~LF~gTIr~NLdp----~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1367 QDPVLFSGSLRMNLDP----FS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred CCCcccCccHHHHcCc----cc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 6766644444443321 21 2333444444443221 111111 12333444444555667789
Q ss_pred CcEEEEcccccCCchH
Q 023731 149 SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 ~~iiiidg~~~~~d~~ 164 (278)
++++++|++.+..|.+
T Consensus 1440 ~~ILiLDEaTSalD~~ 1455 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLE 1455 (1522)
T ss_pred CCEEEEECCcccCCHH
Confidence 9999999999988653
No 449
>PLN03130 ABC transporter C family member; Provisional
Probab=98.94 E-value=1.3e-09 Score=115.18 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=83.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL 114 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 114 (278)
.+++|..++|+|++|||||||++.|.+.+++. .+.+++++.+...-+.+++..++.. +|.+.+.
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~-------~d~e~y~ 711 (1622)
T PLN03130 639 DVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSP-------FDPERYE 711 (1622)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCc-------ccHHHHH
Confidence 99999999999999999999999999998653 2688889999877888887775432 2333333
Q ss_pred HH---------HHHhhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 115 SS---------MEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 115 ~~---------l~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+. +..+..|....+ ..++.+..+|...++....+++++++|++++.+|++.
T Consensus 712 ~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 712 RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred HHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 33 333333433221 1344455556566677788999999999999999753
No 450
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.94 E-value=2.3e-09 Score=92.70 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=40.9
Q ss_pred cCCceeeeCC-c-cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 11 EASSGVHFSG-F-HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 11 ~~~~~~~~~~-~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
+-+..+.|++ . +|++|++ +.++.+++|.|++|||||||++.|++.+.+
T Consensus 3 ~~~~~~~y~~~~~~l~~i~~----------------i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 3 EDEPVHRYGPNSFKLHRLPV----------------PREGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred ccCcceeecCcchhhhcCCC----------------CCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3444788876 3 6888887 889999999999999999999999999875
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.94 E-value=8.3e-09 Score=86.94 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.|+|.|++||||||+|+.|++.+ ++.+++.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~---~~~~is~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY---GIPHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEECCccHH
Confidence 58999999999999999999998 589999887663
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.93 E-value=4.8e-09 Score=87.53 Aligned_cols=28 Identities=21% Similarity=0.463 Sum_probs=25.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
.++.+|+|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5788999999999999999999999874
No 453
>PRK13975 thymidylate kinase; Provisional
Probab=98.93 E-value=2.4e-08 Score=82.69 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
+++|+|.|+.||||||+++.|++.+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999999985
No 454
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.92 E-value=2.6e-09 Score=85.76 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=77.5
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEcCCCCCCCCCHHHHHHcccc
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-RVVLVNQDSFYHNLTEQELARVHEY 100 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~~~~i~~D~~~~~~~~~~~~~~~~~ 100 (278)
+++.||| +..++..++|+|.+||||||||++|++...|- |-..++.......- ..-.....++
T Consensus 28 AV~~vSF---------------tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D-y~~R~k~IRM 91 (267)
T COG4167 28 AVKPVSF---------------TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD-YSFRSKRIRM 91 (267)
T ss_pred cccceEE---------------EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc-hHhhhhheee
Confidence 4899999 99999999999999999999999999998763 33444443322111 1112234455
Q ss_pred CCCCCCc---------------------ccHH-HHHHHHHHhhcCCC------ccccccCCcCCcCCCCCccccCCCcEE
Q 023731 101 NFDHPDA---------------------FDTE-KLLSSMEKLRHGQA------VDIPNYDFKSYKNNVFPARRVNPSDVI 152 (278)
Q Consensus 101 ~~~~~~~---------------------~d~~-~~~~~l~~~~~~~~------i~~~~~~~~~~~~~~~~~~~~~~~~ii 152 (278)
.|++|+. ++.+ +..+..+.+..-+- .+......+..+|+..++..+-++.++
T Consensus 92 iFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iI 171 (267)
T COG4167 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKII 171 (267)
T ss_pred eecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEE
Confidence 6666542 2221 12222222222110 111122334445555556677889999
Q ss_pred EEcccccCCchHHh
Q 023731 153 LLEGILVFHDSRVR 166 (278)
Q Consensus 153 iidg~~~~~d~~~~ 166 (278)
|.|+.++.+|...+
T Consensus 172 IaDeAl~~LD~smr 185 (267)
T COG4167 172 IADEALASLDMSMR 185 (267)
T ss_pred EehhhhhhccHHHH
Confidence 99999988876443
No 455
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.92 E-value=2.2e-09 Score=101.37 Aligned_cols=141 Identities=8% Similarity=0.069 Sum_probs=79.9
Q ss_pred hccCCc-eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCC
Q 023731 9 MIEASS-GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFY 86 (278)
Q Consensus 9 ~~~~~~-~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~ 86 (278)
||+..+ .+.+ ...|++||| .+.+|.+++|.|++|||||||++.|++.+.+ .|-..++..+..
T Consensus 250 ~i~~~~l~~~~-~~~l~~vsl---------------~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 250 ILEVRNLTSLR-QPSIRDVSF---------------DLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred EEEEeCccccc-CcccceeeE---------------EEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 344444 4442 236999999 9999999999999999999999999998754 344444432221
Q ss_pred -------------------------CCCCHHHHHHcccc--CCCCCCccc----HHHHHHHHHHhhcC-CCc--cccccC
Q 023731 87 -------------------------HNLTEQELARVHEY--NFDHPDAFD----TEKLLSSMEKLRHG-QAV--DIPNYD 132 (278)
Q Consensus 87 -------------------------~~~~~~~~~~~~~~--~~~~~~~~d----~~~~~~~l~~~~~~-~~i--~~~~~~ 132 (278)
..++...+...... .......++ .+...+.+..+... ... ....++
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 393 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLS 393 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence 11111000000000 000000011 11223344443332 111 223555
Q ss_pred CcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 133 FKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+..+++..++..+.+++++++|+|++.+|+..
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~ 426 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGA 426 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhH
Confidence 555566656666778999999999999998753
No 456
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.92 E-value=2.5e-09 Score=101.21 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=76.1
Q ss_pred cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEc-------------------
Q 023731 22 HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVN------------------- 81 (278)
Q Consensus 22 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~------------------- 81 (278)
.|+++|| .+.+|.+++|+|++|||||||++.|++.+.+ .|...++
T Consensus 267 ~l~~vsl---------------~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 331 (501)
T PRK10762 267 GVNDVSF---------------TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331 (501)
T ss_pred CcccceE---------------EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEE
Confidence 5899999 9999999999999999999999999998754 2333333
Q ss_pred --CCC----CCCCCCHHHHHHccccC-CCC-CCccc----HHHHHHHHHHhhcC-CCcc--ccccCCcCCcCCCCCcccc
Q 023731 82 --QDS----FYHNLTEQELARVHEYN-FDH-PDAFD----TEKLLSSMEKLRHG-QAVD--IPNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 82 --~D~----~~~~~~~~~~~~~~~~~-~~~-~~~~d----~~~~~~~l~~~~~~-~~i~--~~~~~~~~~~~~~~~~~~~ 146 (278)
++. ++..++..++..+.... +.. ....+ .+...+.+..+... .... ...++.+..+++..++..+
T Consensus 332 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~ 411 (501)
T PRK10762 332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM 411 (501)
T ss_pred ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 221 11222222222211100 000 00011 12233444444332 1121 2255555556665666677
Q ss_pred CCCcEEEEcccccCCchHH
Q 023731 147 NPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~~ 165 (278)
.+++++++|+|++.+|+..
T Consensus 412 ~~p~lllLDEPt~~LD~~~ 430 (501)
T PRK10762 412 TRPKVLILDEPTRGVDVGA 430 (501)
T ss_pred hCCCEEEEcCCCCCCCHhH
Confidence 8999999999999998753
No 457
>PRK02496 adk adenylate kinase; Provisional
Probab=98.92 E-value=7.1e-09 Score=85.12 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 49 FVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 49 ~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+.|+|.|++||||||+++.|++.+ ++..++.++..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~---~~~~i~~~~~~ 36 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL---HIPHISTGDIL 36 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCcEEEhHHHH
Confidence 568999999999999999999998 47778776655
No 458
>PLN03073 ABC transporter F family; Provisional
Probab=98.92 E-value=1.7e-09 Score=105.86 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=45.4
Q ss_pred hhhhccCCc-eeeeCC-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023731 6 VVDMIEASS-GVHFSG-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 6 ~~~~~~~~~-~~~~~~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~ 71 (278)
...||.-.+ ++.|++ ..|+|+|| .+..|.+++|+|+||||||||+++|++.
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl---------------~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASV---------------TLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEE---------------EECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 345677777 999987 46999999 9999999999999999999999999974
No 459
>PLN03232 ABC transporter C family member; Provisional
Probab=98.91 E-value=7.6e-10 Score=116.47 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=82.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC---------CEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ---------RVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLL 114 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~---------~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 114 (278)
.+++|..++|+|++|||||||++.|.+.+++. .+.+++++.+...-+.+++..++.. ++.+.+.
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-------~~~e~~~ 711 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSD-------FESERYW 711 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCc-------cCHHHHH
Confidence 99999999999999999999999999988652 3678899999877788887775431 3334444
Q ss_pred HHHH---------HhhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 115 SSME---------KLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 115 ~~l~---------~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
+.++ .+..|....+ ..++.+..+|...++....+++++++|++++.+|++.
T Consensus 712 ~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 712 RAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred HHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 3333 3333332211 1344444555556667778999999999999999653
No 460
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.91 E-value=1e-08 Score=86.04 Aligned_cols=115 Identities=14% Similarity=0.202 Sum_probs=64.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHH--HHH-ccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQE--LAR-VHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 51 I~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~--~~~-~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
|+|.|++||||||+|+.|++.+ ++.+++.+++++...... ... ...+ .........+.+.+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~---g~~~is~gdllr~~~~~~~~~~~~~~~~-~~~g~~vp~~~~~~l~~~~i~----- 72 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY---GLPHISTGDLLRAEIKAGTPLGKKAKEY-MEKGELVPDEIVNQLVKERLT----- 72 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCeeehhHHHHHhhccccHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHh-----
Confidence 7899999999999999999988 588899877663311000 000 0000 000011111111222211110
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCch--HHh---h-hcCeEEEEecChhhhhHHhhhcc
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDS--RVR---E-LMNMKIFVDTDADVRLARRIRRD 190 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~--~~~---~-~~d~~I~l~~~~e~~~~R~~~R~ 190 (278)
........+|+||.-..... .+. . ..+.+||++++.+.+++|+..|.
T Consensus 73 ----------------~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 73 ----------------QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred ----------------cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 00111345889995332211 111 2 46899999999999999999884
No 461
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.90 E-value=2.7e-08 Score=85.80 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=38.4
Q ss_pred eEEEEecChhhhhHHhhhccccc----cCCCHHHHHHHHhhccccccccccccccccccEEeeCCCCcHHHH
Q 023731 171 MKIFVDTDADVRLARRIRRDTVE----KGRDIATVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAI 238 (278)
Q Consensus 171 ~~I~l~~~~e~~~~R~~~R~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~ 238 (278)
.++|++|+.++.+.|...-+..+ .+..++.+.. +.+.+.|.+..||++||+...+..++
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~---------Er~~L~~lr~~Ad~vIDTs~l~~~~L 146 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEK---------ERELLEPLRERADLVIDTSNLSVHQL 146 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHH---------HHHHHHHHHHhCCEEEECCCCCHHHH
Confidence 68899999999999976433222 1222333222 13445667899999999988775444
No 462
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.2e-09 Score=89.04 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=82.9
Q ss_pred eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEcCCCCCCCC
Q 023731 15 GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---QRVVLVNQDSFYHNL 89 (278)
Q Consensus 15 ~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---~~~~~i~~D~~~~~~ 89 (278)
.+.-++ -+|++||+ +++.+.+.+|.||+|||||||+..|++.-.. .|-..++..+.. .+
T Consensus 10 hv~v~~~keILkgvnL---------------~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~-~l 73 (251)
T COG0396 10 HVEVEGKKEILKGVNL---------------TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-EL 73 (251)
T ss_pred EEEecCchhhhcCcce---------------eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc-cC
Confidence 566665 46999999 9999999999999999999999999996421 344555555533 35
Q ss_pred CHHHHHHccc-cCCCCCCcccH-------------------------HHHHHHHHHhhcCCCc-cc---cccCCcCCcCC
Q 023731 90 TEQELARVHE-YNFDHPDAFDT-------------------------EKLLSSMEKLRHGQAV-DI---PNYDFKSYKNN 139 (278)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~d~-------------------------~~~~~~l~~~~~~~~i-~~---~~~~~~~~~~~ 139 (278)
+..++...+- ..|+.|..+.. +.+.+.+..+...... .. ..|+.+..+|.
T Consensus 74 ~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 74 SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred CHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 5555555542 24565543221 1111222222211100 00 23444444554
Q ss_pred CCCccccCCCcEEEEcccccCCchH
Q 023731 140 VFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 140 ~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
...+..+-.|+++|+|++-+++|-.
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDId 178 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDID 178 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHH
Confidence 4445566789999999999998653
No 463
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.90 E-value=1.1e-08 Score=86.92 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=35.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 45 HRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 45 ~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
...++.|+|.||+||||||+|+.|++.+ ++.+++.++.++
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~---g~~~is~gdllr 42 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKE---NLKHINMGNILR 42 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCcEEECChHHH
Confidence 3455679999999999999999999998 599999998874
No 464
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.90 E-value=4e-09 Score=85.59 Aligned_cols=114 Identities=25% Similarity=0.399 Sum_probs=81.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC-----CCCEEEEcCCCCCCCCCHHHHHHcccc--------CCCCCCcccHHHHH
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLH-----DQRVVLVNQDSFYHNLTEQELARVHEY--------NFDHPDAFDTEKLL 114 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~-----~~~~~~i~~D~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~ 114 (278)
|.+|+++||.||||||++-+|-..+. ...+..++.|+|| ++..+..++... .-+.++..|...+.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFY--LThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFY--LTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEeccee--eechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 89999999999999999988776553 2257889999999 554443322211 23456788999988
Q ss_pred HHHHHhhcCC----CccccccCCcCC----cCCC-CCccccCCCcEEEEcccccCCch
Q 023731 115 SSMEKLRHGQ----AVDIPNYDFKSY----KNNV-FPARRVNPSDVILLEGILVFHDS 163 (278)
Q Consensus 115 ~~l~~~~~~~----~i~~~~~~~~~~----~~~~-~~~~~~~~~~iiiidg~~~~~d~ 163 (278)
+.|+.+..+. .+.+|.|+.+.. +|.. ..+..+.+..++|+||+..+..|
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~P 166 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKP 166 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccc
Confidence 8888776543 467788877654 3332 22345667899999999988755
No 465
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.90 E-value=7.3e-10 Score=100.76 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=69.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHH----------------ccccCCCCCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELAR----------------VHEYNFDHPD 106 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~----------------~~~~~~~~~~ 106 (278)
...+|+.|++.||||+||||+.+.|-+.++. .|...+++.+.- ..+....+. +-+.-|..|.
T Consensus 560 ~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr-nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~ 638 (790)
T KOG0056|consen 560 TVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR-NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS 638 (790)
T ss_pred EecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH-HHHHHHHHHhcCcccCcceeecceeeeheeecCCC
Confidence 9999999999999999999999999999863 345555554321 122221111 1112244455
Q ss_pred cccHHHH--------HHHHHHhhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCc
Q 023731 107 AFDTEKL--------LSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD 162 (278)
Q Consensus 107 ~~d~~~~--------~~~l~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d 162 (278)
+-|.+.. .+.+..+.+|=.... -..+.++.+|++.++..+..|.++++|+..+.+|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALD 706 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALD 706 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcC
Confidence 4443322 222222222211100 1344555566666666778899999999998764
No 466
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.89 E-value=3.9e-09 Score=99.48 Aligned_cols=159 Identities=15% Similarity=0.188 Sum_probs=98.8
Q ss_pred hccCCc-eeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC-C--------
Q 023731 9 MIEASS-GVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ-R-------- 76 (278)
Q Consensus 9 ~~~~~~-~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~-~-------- 76 (278)
.++..+ .++|++ ..++++|| .+.++..|+|+||+|+|||||.+.|++.+.+. |
T Consensus 321 vl~~~~~~~~y~~~~~l~~~~s~---------------~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v 385 (530)
T COG0488 321 VLEFENVSKGYDGGRLLLKDLSF---------------RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETV 385 (530)
T ss_pred eEEEeccccccCCCceeecCceE---------------EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCce
Confidence 356666 889966 47999999 99999999999999999999999998876532 1
Q ss_pred -EEEEcCCC--CCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCC-Ccccc--ccCCcCCcCCCCCccccCCCc
Q 023731 77 -VVLVNQDS--FYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQ-AVDIP--NYDFKSYKNNVFPARRVNPSD 150 (278)
Q Consensus 77 -~~~i~~D~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~~~~ 150 (278)
+.+++++. +....+..+ .+.. .........+...|..+.... ....| .++.+...|+..+.....++.
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d--~l~~----~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pN 459 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLE--ELSE----GFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPN 459 (530)
T ss_pred EEEEEEehhhhcCccCcHHH--HHHh----hCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCC
Confidence 34555532 111111111 1111 111111344555565555433 22223 455555555555556678999
Q ss_pred EEEEcccccCCchHHh--------hhcCeEEEEecChhhhhHHhhhc
Q 023731 151 VILLEGILVFHDSRVR--------ELMNMKIFVDTDADVRLARRIRR 189 (278)
Q Consensus 151 iiiidg~~~~~d~~~~--------~~~d~~I~l~~~~e~~~~R~~~R 189 (278)
++|+|+|...+|.+.. ++-..+|+|..+... +.++..+
T Consensus 460 vLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~F-l~~va~~ 505 (530)
T COG0488 460 LLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYF-LDRVATR 505 (530)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHH-HHhhcce
Confidence 9999999999886433 333678888777653 3444433
No 467
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.89 E-value=2.7e-09 Score=87.57 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLH 73 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~ 73 (278)
++++|.|+||+|||||||++.|...++
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 356899999999999999999999875
No 468
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.87 E-value=2.4e-08 Score=95.33 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=35.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--EEEEcCCCCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QR--VVLVNQDSFY 86 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~--~~~i~~D~~~ 86 (278)
..+++.+|+|+|.+||||||+|+.|++.+.. .+ +.+++.|.+.
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 5678899999999999999999999999863 22 5888888653
No 469
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.87 E-value=2.3e-09 Score=112.82 Aligned_cols=135 Identities=14% Similarity=0.191 Sum_probs=81.4
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--------------------EEEEcC
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQR--------------------VVLVNQ 82 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~--------------------~~~i~~ 82 (278)
++||+|+|.+.+.|........+++|..|||+|++|||||||++.|.+.+...| +.++++
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQ 1299 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQ 1299 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeC
Confidence 444444444333333333333999999999999999999999999999876433 445555
Q ss_pred CCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---------CCCccc----cccCCcCCcCCCCCccccCCC
Q 023731 83 DSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI----PNYDFKSYKNNVFPARRVNPS 149 (278)
Q Consensus 83 D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---------~~~i~~----~~~~~~~~~~~~~~~~~~~~~ 149 (278)
|.+...-+.+.+... + ..++.+.+.+.++.... |-...+ ..++.+..++...++..+.++
T Consensus 1300 dp~LF~GTIR~NLdp----~---~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1300 KVFIFSGTFRKNLDP----Y---EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred CCccCccCHHHHhCc----c---cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 555543344443321 1 12334455555553322 111111 123334444545566778899
Q ss_pred cEEEEcccccCCchH
Q 023731 150 DVILLEGILVFHDSR 164 (278)
Q Consensus 150 ~iiiidg~~~~~d~~ 164 (278)
+++++|++.+..|..
T Consensus 1373 ~ILlLDEaTS~lD~~ 1387 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPV 1387 (1490)
T ss_pred CEEEEeCCcccCCHH
Confidence 999999999998764
No 470
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.87 E-value=1.4e-08 Score=84.94 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQ 71 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~ 71 (278)
...++.+|.|+||||||||||++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3567899999999999999999999875
No 471
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.87 E-value=1.4e-08 Score=87.41 Aligned_cols=156 Identities=17% Similarity=0.252 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHD--QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~--~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
+|.|+|++||||||+|+.|++.+.. ..+.+++.|.+...+. . +.. .. .+.+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~--------~--~~~--~~-e~~~~~~~~~~i------ 61 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP--------V--WKE--KY-EEFIRDSTLYLI------ 61 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH--------H--hhH--Hh-HHHHHHHHHHHH------
Confidence 4899999999999999999998842 2355665554321110 0 100 00 000111110000
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCc--hHHhhh------cCeEEEEecChhhhhHHhhhccccccCCCHH
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD--SRVREL------MNMKIFVDTDADVRLARRIRRDTVEKGRDIA 199 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d--~~~~~~------~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~ 199 (278)
...+..+..+|+|+...... ..+... ....||+++|.+.+.+|..+|... ..+
T Consensus 62 ---------------~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~----~~~ 122 (249)
T TIGR03574 62 ---------------KTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK----IPN 122 (249)
T ss_pred ---------------HHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC----CCH
Confidence 11223344578887543311 122211 136899999999999998888532 122
Q ss_pred HHHHH-HhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 200 TVLDQ-YSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 200 ~~~~~-~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
+.... +.....|.... ....++++|+.+.+. .++++.+.|.+.+
T Consensus 123 ~~i~~l~~r~e~p~~~~----~wd~~~~~vd~~~~~--~~~ei~~~i~~~~ 167 (249)
T TIGR03574 123 EVIKDMYEKFDEPGTKY----SWDLPDLTIDTTKKI--DYNEILEEILEIS 167 (249)
T ss_pred HHHHHHHHhhCCCCCCC----CccCceEEecCCCCC--CHHHHHHHHHHHh
Confidence 33322 22222222110 124589999775432 2355555554443
No 472
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.86 E-value=2.8e-09 Score=111.63 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
.+++|.+++|+|+||||||||++.|++.+.| .|...+
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 444 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEE
Confidence 9999999999999999999999999999865 344455
No 473
>PTZ00243 ABC transporter; Provisional
Probab=98.86 E-value=2.5e-09 Score=112.72 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=81.6
Q ss_pred ccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEEEc
Q 023731 23 MDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVLVN 81 (278)
Q Consensus 23 l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~i~ 81 (278)
++||+|+|.+...|.....-..+++|..|||+|++|||||||++.|.+.+.+ ..+.+++
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence 5555555544332334444449999999999999999999999999998764 2356666
Q ss_pred CCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCc---------cc----cccCCcCCcCCCCCccccCC
Q 023731 82 QDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAV---------DI----PNYDFKSYKNNVFPARRVNP 148 (278)
Q Consensus 82 ~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i---------~~----~~~~~~~~~~~~~~~~~~~~ 148 (278)
+|.+...-+.+++... + ..++.+.+.+.++.......+ .+ ..++.+..++...++..+.+
T Consensus 1391 Qdp~LF~gTIreNIdp----~---~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1391 QDPVLFDGTVRQNVDP----F---LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred CCCccccccHHHHhCc----c---cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 6666644455444421 1 123344555555543221111 11 12333333444445556664
Q ss_pred -CcEEEEcccccCCchH
Q 023731 149 -SDVILLEGILVFHDSR 164 (278)
Q Consensus 149 -~~iiiidg~~~~~d~~ 164 (278)
++++|+|++.+..|++
T Consensus 1464 ~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPA 1480 (1560)
T ss_pred CCCEEEEeCCCccCCHH
Confidence 7999999999998764
No 474
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.85 E-value=4.1e-09 Score=86.70 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=83.0
Q ss_pred hccCCc-ee-eeCCc-----cccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 023731 9 MIEASS-GV-HFSGF-----HMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLV 80 (278)
Q Consensus 9 ~~~~~~-~~-~~~~~-----~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i 80 (278)
||+.++ .+ .|.|+ +|+++++ .+.++..|.|.|.+||||||+++.|++.+.+ .|-..|
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL---------------~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~I 65 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSL---------------EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILI 65 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCce---------------eecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEE
Confidence 455555 44 44443 4999999 9999999999999999999999999999865 455777
Q ss_pred cCCCCCCCCCHHHHHHccccCCCCCCc---------------------------cc---HHHHHHHHHHhhcCCC--c--
Q 023731 81 NQDSFYHNLTEQELARVHEYNFDHPDA---------------------------FD---TEKLLSSMEKLRHGQA--V-- 126 (278)
Q Consensus 81 ~~D~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~d---~~~~~~~l~~~~~~~~--i-- 126 (278)
++.+.-+ .+......+-.-.|++|.. .+ .+.+.+.+..+..|-. .
T Consensus 66 dg~dVtk-~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~ 144 (263)
T COG1101 66 DGVDVTK-KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD 144 (263)
T ss_pred Cceeccc-CCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcC
Confidence 7755443 2222222222223444321 01 1122233333322211 0
Q ss_pred cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 127 DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+..++.+..+........+.+++++++|+..+.+||..
T Consensus 145 ~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkt 183 (263)
T COG1101 145 RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT 183 (263)
T ss_pred hhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcch
Confidence 111222222222223334567899999999999999864
No 475
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.2e-07 Score=73.47 Aligned_cols=151 Identities=19% Similarity=0.240 Sum_probs=84.0
Q ss_pred EcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHcc-ccCCCCCCcccH-HHHHHHHHHhhcCCCcccccc
Q 023731 54 AGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVH-EYNFDHPDAFDT-EKLLSSMEKLRHGQAVDIPNY 131 (278)
Q Consensus 54 ~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~-~~~~~~~~~~d~-~~~~~~l~~~~~~~~i~~~~~ 131 (278)
.|.+||||||++.+|++.| ++.++++|+++... +..++. .....+...+.| +.+.+.+.....++
T Consensus 1 MGVsG~GKStvg~~lA~~l---g~~fidGDdlHp~a---Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~------- 67 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL---GAKFIDGDDLHPPA---NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKN------- 67 (161)
T ss_pred CCCCccCHHHHHHHHHHHc---CCceecccccCCHH---HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCC-------
Confidence 4899999999999999999 59999999988543 233332 223333333322 22223332222111
Q ss_pred CCcCCcCCCCCccccCCCcEEEEcccccCC-chHHhhhc-C-eEEEEecChhhhhHHhhhccccccCCCHHHHHHHHhhc
Q 023731 132 DFKSYKNNVFPARRVNPSDVILLEGILVFH-DSRVRELM-N-MKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQYSKF 208 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~iiiidg~~~~~-d~~~~~~~-d-~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 208 (278)
...+|.+..+--. ...++.-+ + ..|||+.+.++.++|+..|.+..-. ...+..++...
T Consensus 68 -----------------~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~--~~ll~SQfa~L 128 (161)
T COG3265 68 -----------------KHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMP--ASLLDSQFATL 128 (161)
T ss_pred -----------------CceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCC--HHHHHHHHHHh
Confidence 1134444433110 11122222 2 5689999999999999999866543 33444566554
Q ss_pred ccccccccccccccccc-EEeeCCCCcHHHHHHHHHHHHHhh
Q 023731 209 VKPAFDDFILPTKKYAD-IIIPRGGDNHVAIDLIVQHIRTKL 249 (278)
Q Consensus 209 ~~~~~~~~i~~~~~~aD-~iI~n~~~~~~~~~~l~~~I~~~l 249 (278)
..|.-+ .| +.|+.+.+ ++.+++.+...+
T Consensus 129 E~P~~d---------e~vi~idi~~~----~e~vv~~~~~~l 157 (161)
T COG3265 129 EEPGAD---------EDVLTIDIDQP----PEEVVAQALAWL 157 (161)
T ss_pred cCCCCC---------CCEEEeeCCCC----HHHHHHHHHHHH
Confidence 433321 24 45555543 555555555444
No 476
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.84 E-value=2.7e-08 Score=81.21 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHN 88 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~ 88 (278)
.|.|.|+|||||||+|+.|++.+ ++..++.+++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~---~i~hlstgd~~r~ 37 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL---GLPHLDTGDILRA 37 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCcEEcHhHHhHh
Confidence 58999999999999999999997 5899998887744
No 477
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.84 E-value=4.9e-09 Score=95.87 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=42.4
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCC
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSF 85 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~ 85 (278)
.+|++||| ....|..++|+||||||||||+|.|.+.+.+ .|.+-++.-++
T Consensus 350 pil~~isF---------------~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 350 PILKGISF---------------ALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred cceeccee---------------EecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 56999999 9999999999999999999999999999865 45566665443
No 478
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=1.4e-08 Score=81.41 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=74.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHG 123 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 123 (278)
....+.||+|.|++||||-|.+..+++.+ ++..++..+..+..... ++.-....+.+ .+..|
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky---~ftHlSaGdLLR~E~~~------------~gse~g~~I~~---~i~~G 65 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKY---GFTHLSAGDLLRAEIAS------------AGSERGALIKE---IIKNG 65 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHc---CceeecHHHHHHHHHcc------------ccChHHHHHHH---HHHcC
Confidence 46778899999999999999999999998 48888888766332111 01100111111 22233
Q ss_pred CCccccccCCcCCcCCCCCccccCCCcEEEEcccccCCc------hHHhhhcCeEEEEecChhhhhHHhhhcccc
Q 023731 124 QAVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD------SRVRELMNMKIFVDTDADVRLARRIRRDTV 192 (278)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d------~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~ 192 (278)
..+.......-.. .+.....+...+++||.=--.+ ..+....++++|++|+.+++++|+++|+..
T Consensus 66 ~iVP~ei~~~LL~----~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 66 DLVPVEITLSLLE----EAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred CcCcHHHHHHHHH----HHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 3221111100000 0011122223378888432212 122224689999999999999999999865
No 479
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.82 E-value=3.1e-08 Score=81.73 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 51 IGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 51 I~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
|+|+|++||||||+|+.|++.+ ++.+++.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~---~~~~i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY---GLPHISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCeEEECcHHHH
Confidence 7999999999999999999998 588999988663
No 480
>PLN02674 adenylate kinase
Probab=98.81 E-value=1.7e-08 Score=86.10 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 46 RQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 46 ~~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
+..+.|.|.||+||||||+|+.|++.+ ++.+++.++.++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~---~~~his~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY---CLCHLATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc---CCcEEchhHHHH
Confidence 445678999999999999999999998 589999988764
No 481
>PRK14526 adenylate kinase; Provisional
Probab=98.81 E-value=3.5e-08 Score=82.75 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.|+|.|++||||||+++.|++.+ ++.+++.++.++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~---~~~~is~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL---NYYHISTGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCceeecChHHH
Confidence 47899999999999999999987 477888877653
No 482
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.81 E-value=5.9e-09 Score=81.72 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+|.++|++||||||+++.|++.++ ..+++.|.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHH
Confidence 589999999999999999999874 8888888744
No 483
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=1.1e-08 Score=98.72 Aligned_cols=128 Identities=18% Similarity=0.205 Sum_probs=87.4
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------------------CCEEE
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD---------------------QRVVL 79 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~---------------------~~~~~ 79 (278)
..|++|+. ...++.+.||.||||||||||.++|+++... .-+.+
T Consensus 44 ~iL~~vsg---------------~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~y 108 (613)
T KOG0061|consen 44 TILKGVSG---------------TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGY 108 (613)
T ss_pred eeeeCcEE---------------EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEE
Confidence 46999999 9999999999999999999999999998752 12467
Q ss_pred EcCCCC-CCCCCHHHHHHccccCCCCCCcccHH----HHHHHHHHhhcCC--Cccc-----cccCCcCCcCCCCCccccC
Q 023731 80 VNQDSF-YHNLTEQELARVHEYNFDHPDAFDTE----KLLSSMEKLRHGQ--AVDI-----PNYDFKSYKNNVFPARRVN 147 (278)
Q Consensus 80 i~~D~~-~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~l~~~~~~~--~i~~-----~~~~~~~~~~~~~~~~~~~ 147 (278)
+.+|+. +..++.++...+... +.-|.....+ +..+.+.++.... +..+ ...+.++.+|+......+.
T Consensus 109 V~QdD~l~~~LTV~EtL~f~A~-lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~ 187 (613)
T KOG0061|consen 109 VQQDDVLLPTLTVRETLRFSAL-LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT 187 (613)
T ss_pred EcccccccccccHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc
Confidence 777665 466777775443322 2223333333 3344444444321 1111 2355566666666667788
Q ss_pred CCcEEEEcccccCCchH
Q 023731 148 PSDVILLEGILVFHDSR 164 (278)
Q Consensus 148 ~~~iiiidg~~~~~d~~ 164 (278)
+|.++++|+|+.++|..
T Consensus 188 ~P~iLflDEPTSGLDS~ 204 (613)
T KOG0061|consen 188 DPSILFLDEPTSGLDSF 204 (613)
T ss_pred CCCEEEecCCCCCcchh
Confidence 99999999999999863
No 484
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.80 E-value=5.9e-09 Score=110.03 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=88.9
Q ss_pred ccCCc-eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--------CE
Q 023731 10 IEASS-GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RV 77 (278)
Q Consensus 10 ~~~~~-~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--------~~ 77 (278)
|+-++ +..|++ ..|+|+|| .+++|.+++|+|++|||||||++.|.+.+++. .+
T Consensus 637 i~~~~~~~~~~~~~~~~l~~isl---------------~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i 701 (1522)
T TIGR00957 637 ITVHNATFTWARDLPPTLNGITF---------------SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV 701 (1522)
T ss_pred EEEEEeEEEcCCCCCceeeeeEE---------------EEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEE
Confidence 34444 556653 46888888 99999999999999999999999999987642 35
Q ss_pred EEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHH---------HHHHhhcCCCc----cccccCCcCCcCCCCCcc
Q 023731 78 VLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLS---------SMEKLRHGQAV----DIPNYDFKSYKNNVFPAR 144 (278)
Q Consensus 78 ~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~l~~~~~~~~i----~~~~~~~~~~~~~~~~~~ 144 (278)
.+++++.+....+.+++..++.. ++.+...+ .+..+..|... .-..++.+..+|...++.
T Consensus 702 ~yv~Q~~~l~~~Ti~eNI~~g~~-------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA 774 (1522)
T TIGR00957 702 AYVPQQAWIQNDSLRENILFGKA-------LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 774 (1522)
T ss_pred EEEcCCccccCCcHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence 67888877766677666654321 22222222 22222222211 112344455556566667
Q ss_pred ccCCCcEEEEcccccCCchH
Q 023731 145 RVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 145 ~~~~~~iiiidg~~~~~d~~ 164 (278)
...+++++++|+|++.+|+.
T Consensus 775 l~~~~~illLDEp~saLD~~ 794 (1522)
T TIGR00957 775 VYSNADIYLFDDPLSAVDAH 794 (1522)
T ss_pred HhcCCCEEEEcCCccccCHH
Confidence 77899999999999999974
No 485
>PLN03140 ABC transporter G family member; Provisional
Probab=98.77 E-value=3.6e-08 Score=103.22 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=87.1
Q ss_pred eeeeCCccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----C--------------
Q 023731 15 GVHFSGFHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ----R-------------- 76 (278)
Q Consensus 15 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~----~-------------- 76 (278)
+++++..+|+|||+ .+++|.+++|.||||||||||++.|++.+.+. |
T Consensus 173 ~k~~~~~IL~~vs~---------------~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~ 237 (1470)
T PLN03140 173 AKKTKLTILKDASG---------------IIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP 237 (1470)
T ss_pred CCCccceeccCCeE---------------EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc
Confidence 45566678999999 99999999999999999999999999987542 2
Q ss_pred ---EEEEcCCC-CCCCCCHHHHHHccccCCCCCCcc-------------------cHH---------------HHHHHHH
Q 023731 77 ---VVLVNQDS-FYHNLTEQELARVHEYNFDHPDAF-------------------DTE---------------KLLSSME 118 (278)
Q Consensus 77 ---~~~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------d~~---------------~~~~~l~ 118 (278)
+.++.+++ ++..++..+...+..........+ +.+ .....++
T Consensus 238 ~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~ 317 (1470)
T PLN03140 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLK 317 (1470)
T ss_pred cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHH
Confidence 34445543 345566666544432111000000 000 0122344
Q ss_pred HhhcCC-------CccccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 119 KLRHGQ-------AVDIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 119 ~~~~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
.+.... .-....++.+..+|+......+.+++++++|+|..++|+.
T Consensus 318 ~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~ 370 (1470)
T PLN03140 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 370 (1470)
T ss_pred HcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHH
Confidence 433321 1122467777777877777788899999999999999973
No 486
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.77 E-value=1.2e-08 Score=98.95 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=82.3
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCE-----------------EE
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----QRV-----------------VL 79 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----~~~-----------------~~ 79 (278)
..|+|||+ .+++|.+++|.|++|||||||.+.|++...+ .|. .+
T Consensus 39 ~iL~~vs~---------------~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~y 103 (617)
T TIGR00955 39 HLLKNVSG---------------VAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAY 103 (617)
T ss_pred ccccCCEE---------------EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhcee
Confidence 57999999 9999999999999999999999999998753 122 34
Q ss_pred EcCCCCC-CCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCC--Cccc------cccCCcCCcCCCCCcccc
Q 023731 80 VNQDSFY-HNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQ--AVDI------PNYDFKSYKNNVFPARRV 146 (278)
Q Consensus 80 i~~D~~~-~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~--~i~~------~~~~~~~~~~~~~~~~~~ 146 (278)
+.+++.+ ..++..++..+... +..+..... ....+.++.+.... +... ..++.+..+|....+..+
T Consensus 104 v~Q~~~~~~~lTV~e~l~f~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~ 182 (617)
T TIGR00955 104 VQQDDLFIPTLTVREHLMFQAH-LRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL 182 (617)
T ss_pred eccccccCccCcHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHH
Confidence 4444433 34566555444322 111222221 22344444443321 1111 235566666666666778
Q ss_pred CCCcEEEEcccccCCchH
Q 023731 147 NPSDVILLEGILVFHDSR 164 (278)
Q Consensus 147 ~~~~iiiidg~~~~~d~~ 164 (278)
.+++++++|+|..++|+.
T Consensus 183 ~~p~vlllDEPtsgLD~~ 200 (617)
T TIGR00955 183 TDPPLLFCDEPTSGLDSF 200 (617)
T ss_pred cCCCEEEeeCCCcchhHH
Confidence 899999999999999974
No 487
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.77 E-value=3.3e-07 Score=73.83 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=26.4
Q ss_pred EcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 54 AGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 54 ~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.|+|||||||+++.|++.+ +..+++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l---~~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL---HAAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh---CCeEEeCccCC
Confidence 5999999999999999998 47888888765
No 488
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.77 E-value=2.7e-08 Score=93.37 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 50 VIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 50 iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
.|+|+|++||||||+++.|++.+ +..+++.|.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l---g~~~id~D~~i 35 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL---DLQFIDMDEEI 35 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCeEEECcHHH
Confidence 58999999999999999999988 58999999765
No 489
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.77 E-value=2.8e-08 Score=87.91 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=32.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
+.+|.++|++||||||+|+.|++.++ +..+++.|.+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~--~~~~l~~D~~r 38 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP--KAVNVNRDDLR 38 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC--CCEEEeccHHH
Confidence 57899999999999999999999984 57888888754
No 490
>PRK13409 putative ATPase RIL; Provisional
Probab=98.76 E-value=3e-09 Score=102.26 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=43.4
Q ss_pred ccCCceeeeCC--ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 023731 10 IEASSGVHFSG--FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD 74 (278)
Q Consensus 10 ~~~~~~~~~~~--~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~ 74 (278)
++....++||+ |.|++|+. ..+|.+++|.|++||||||+.+.|++.+.|
T Consensus 75 ~~~~~~~~yg~~~~~L~~l~~----------------i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p 125 (590)
T PRK13409 75 LEEEPVHRYGVNGFKLYGLPI----------------PKEGKVTGILGPNGIGKTTAVKILSGELIP 125 (590)
T ss_pred hccCceEEecCCceeEecCCc----------------CCCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 55666899986 68999987 799999999999999999999999998764
No 491
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.76 E-value=1e-08 Score=107.27 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=82.4
Q ss_pred ccCCc-eeeeC----C-ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC---C-CCEE-
Q 023731 10 IEASS-GVHFS----G-FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLH---D-QRVV- 78 (278)
Q Consensus 10 ~~~~~-~~~~~----~-~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~---~-~~~~- 78 (278)
++..+ ++.|+ + ..|+|||+ .+++|.+++|.|+||||||||++.|++.+. + .|-.
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~---------------~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~ 824 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDG---------------WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRL 824 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEE---------------EEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 34444 55663 2 46899999 999999999999999999999999999875 1 1333
Q ss_pred ---------------EEcCCC-CCCCCCHHHHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCcc--cc----ccC
Q 023731 79 ---------------LVNQDS-FYHNLTEQELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAVD--IP----NYD 132 (278)
Q Consensus 79 ---------------~i~~D~-~~~~~~~~~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i~--~~----~~~ 132 (278)
++.+++ ++..++.++...+..... .+..... +...+.++.+....... .. .++
T Consensus 825 i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~-~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LS 903 (1394)
T TIGR00956 825 VNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR-QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLN 903 (1394)
T ss_pred ECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCC
Confidence 333332 233344444433321110 1111111 22334444443321111 11 355
Q ss_pred CcCCcCCCCCccccCCCc-EEEEcccccCCchH
Q 023731 133 FKSYKNNVFPARRVNPSD-VILLEGILVFHDSR 164 (278)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-iiiidg~~~~~d~~ 164 (278)
.+..+++...+..+.+++ ++++|+|.+++|+.
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~ 936 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHH
Confidence 555556555556677886 99999999999974
No 492
>PLN02459 probable adenylate kinase
Probab=98.74 E-value=8.5e-08 Score=82.36 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYH 87 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~ 87 (278)
.++.|.|.||+||||||+|+.|++.+ ++.+++..++++
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~---~~~~is~gdllR 65 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLL---GVPHIATGDLVR 65 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh---CCcEEeCcHHHH
Confidence 34668889999999999999999998 588899887663
No 493
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.74 E-value=3.1e-07 Score=76.62 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRV 77 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~ 77 (278)
++++|+|-|.-||||||.++.|.+.|...+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~ 32 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI 32 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5889999999999999999999999976654
No 494
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.4e-09 Score=94.85 Aligned_cols=146 Identities=14% Similarity=0.264 Sum_probs=81.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEcCCCCCCCCCHHHHHH-cc---------------ccCCCCCC
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD-QRVVLVNQDSFYHNLTEQELAR-VH---------------EYNFDHPD 106 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~-~~~~~i~~D~~~~~~~~~~~~~-~~---------------~~~~~~~~ 106 (278)
.++.++.++|.|++|+||||+++.|-+.+++ .|...++..+ .+..+...... .+ +..|+.|.
T Consensus 285 ~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd-ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~ 363 (497)
T COG5265 285 TIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD-IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD 363 (497)
T ss_pred cccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh-HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc
Confidence 9999999999999999999999999999975 3444444322 22222222111 11 11133333
Q ss_pred cccHH--------HHHHHHHHhhcCCCccc----cccCCcCCcCCCCCccccCCCcEEEEcccccCCchHHhhhcCeEEE
Q 023731 107 AFDTE--------KLLSSMEKLRHGQAVDI----PNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRVRELMNMKIF 174 (278)
Q Consensus 107 ~~d~~--------~~~~~l~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~ 174 (278)
.=+.+ .+.+.++.+..|-.... =..+.++.+|+..++..+..|+++++|+..+.+|
T Consensus 364 at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsald------------ 431 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALD------------ 431 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhh------------
Confidence 22211 12222222222211111 1334455556666667788999999999998864
Q ss_pred EecChhhhhHHhhhccccccCCCHHHHHHHHh
Q 023731 175 VDTDADVRLARRIRRDTVEKGRDIATVLDQYS 206 (278)
Q Consensus 175 l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~ 206 (278)
...|..+++-+++- ..+++.--+.++..
T Consensus 432 --t~te~~iq~~l~~~--~~~rttlviahrls 459 (497)
T COG5265 432 --THTEQAIQAALREV--SAGRTTLVIAHRLS 459 (497)
T ss_pred --hhHHHHHHHHHHHH--hCCCeEEEEeehhh
Confidence 35555666655542 23444444444443
No 495
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.72 E-value=9.9e-09 Score=108.07 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=84.5
Q ss_pred ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--------CEEEEcCCCCCCCCCHH
Q 023731 21 FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHDQ--------RVVLVNQDSFYHNLTEQ 92 (278)
Q Consensus 21 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~~--------~~~~i~~D~~~~~~~~~ 92 (278)
..|+|||| .+++|.+++|+||+|||||||++.|.+.+.+. .+.++.++.+....+..
T Consensus 440 ~~l~~i~l---------------~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 440 PVLKNISF---------------KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIK 504 (1490)
T ss_pred cceeeeEE---------------EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHH
Confidence 47999999 99999999999999999999999999987642 25677778776555666
Q ss_pred HHHHccccCCCCCCcccH----HHHHHHHHHhhcCCCc----cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchH
Q 023731 93 ELARVHEYNFDHPDAFDT----EKLLSSMEKLRHGQAV----DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSR 164 (278)
Q Consensus 93 ~~~~~~~~~~~~~~~~d~----~~~~~~l~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~ 164 (278)
++..++.. +.. ..+.. ..+.+.+..+..+... ....++.+..+|...++....+++++++|+|++.+|+.
T Consensus 505 eNI~~g~~-~~~-~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 505 DNIIFGLS-YDE-YRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHHHhccc-cch-HHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 66654431 211 11110 0122233333333221 11244555556666666777899999999999999974
No 496
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.72 E-value=3e-08 Score=80.35 Aligned_cols=165 Identities=12% Similarity=0.129 Sum_probs=75.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhcCCCcc
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRHGQAVD 127 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i~ 127 (278)
+.+|.+.|+|.|||||||++|++.+. ..+..++.|.|...+............+.....-....+...+..+..
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~-~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----- 74 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLP-EPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHA----- 74 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSS-S-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHH-----
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCc-CCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHH-----
Confidence 47899999999999999999999986 335777778776433221111101111110000001111222211111
Q ss_pred ccccCCcCCcCCCCCccccCCCcEEEEcccccCCc---hHHhhhc---C-eEEEEecChhhhhHHhhhccccccCCCHHH
Q 023731 128 IPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHD---SRVRELM---N-MKIFVDTDADVRLARRIRRDTVEKGRDIAT 200 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d---~~~~~~~---d-~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~ 200 (278)
........+--+|+|..+.... ..+++.+ + +.|-|.||.++..+|=..|.....| ...
T Consensus 75 -------------~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G--~a~ 139 (174)
T PF07931_consen 75 -------------AIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG--LAA 139 (174)
T ss_dssp -------------HHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT--HHH
T ss_pred -------------HHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH--HHH
Confidence 0011223344567776554321 1122333 2 6788899999888887777643333 111
Q ss_pred HHHHHhhccccccccccccccccccEEeeCCCCcHHHHHHHHHHHHHh
Q 023731 201 VLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTK 248 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~~~~aD~iI~n~~~~~~~~~~l~~~I~~~ 248 (278)
.++.. +. ....+|+.||+...++ ++..+.|.+.
T Consensus 140 --~q~~~-Vh---------~~~~YDleVDTs~~sp---~ecA~~I~~~ 172 (174)
T PF07931_consen 140 --WQAEH-VH---------EGGRYDLEVDTSATSP---EECAREILAR 172 (174)
T ss_dssp --HHTTG-GG---------TT---SEEEETTSS-H---HHHHHHHHTT
T ss_pred --HHHhh-cc---------cCCCCCEEEECCCCCH---HHHHHHHHHH
Confidence 11211 11 1346899998886654 4444444433
No 497
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.71 E-value=1.2e-07 Score=77.53 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=29.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCC
Q 023731 48 PFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQD 83 (278)
Q Consensus 48 ~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D 83 (278)
+.+|.++|++||||||+|+.|++.|...+..+++..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 357899999999999999999999975555555443
No 498
>PRK12338 hypothetical protein; Provisional
Probab=98.70 E-value=1.1e-07 Score=83.96 Aligned_cols=37 Identities=22% Similarity=0.479 Sum_probs=30.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEcCCCCC
Q 023731 47 QPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFY 86 (278)
Q Consensus 47 ~~~iI~I~G~sGsGKTTla~~L~~~l~~~~~~~i~~D~~~ 86 (278)
++.+|+|+|+|||||||+|+.|++.++ +..+..+++.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~---~~~~~~tD~~ 39 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN---IKHLIETDFI 39 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC---CeEEccChHH
Confidence 568999999999999999999999984 6656454444
No 499
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=7.7e-09 Score=105.56 Aligned_cols=153 Identities=15% Similarity=0.317 Sum_probs=92.6
Q ss_pred eeeeCC---ccccceeeecccCCCCchhhhhhCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----------------
Q 023731 15 GVHFSG---FHMDGLEVRNKETGQPTISAAENLHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------------- 74 (278)
Q Consensus 15 ~~~~~~---~~l~~i~~~~~~~~~~~~~~~~~~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----------------- 74 (278)
.++|.. ..|++||| .++++..|||+|-.|||||||+.+|-+...+
T Consensus 1145 ~~RYrp~lp~VLk~is~---------------~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1145 SLRYRPNLPLVLKGISF---------------TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL 1209 (1381)
T ss_pred EEEeCCCCcchhcCceE---------------EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH
Confidence 566666 34777777 9999999999999999999999999998753
Q ss_pred ----CCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHHHHHHHHhhc---------CCCccc--cccCCcCCcCC
Q 023731 75 ----QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKLLSSMEKLRH---------GQAVDI--PNYDFKSYKNN 139 (278)
Q Consensus 75 ----~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---------~~~i~~--~~~~~~~~~~~ 139 (278)
.++.+|++|++...-+.+. +.+..+.+.-+.+.++|+.-.. +-+... ..-+++.++|+
T Consensus 1210 ~dLRsrlsIIPQdPvLFsGTvR~-------NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSGTVRF-------NLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQ 1282 (1381)
T ss_pred HHHHhcCeeeCCCCceecCcccc-------ccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHH
Confidence 2345556665553222211 2222233444444444442222 111111 12344444443
Q ss_pred --CCCccccCCCcEEEEcccccCCchHHhhhcCeEEEEecChhhhhHHhhhccccccCCCHHHHHHHH
Q 023731 140 --VFPARRVNPSDVILLEGILVFHDSRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIATVLDQY 205 (278)
Q Consensus 140 --~~~~~~~~~~~iiiidg~~~~~d~~~~~~~d~~I~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 205 (278)
..++..+.+.+++++|+..+..|+ ..+...++.++.. ..+.+.--+.++.
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~--------------~TD~lIQ~tIR~~--F~dcTVltIAHRl 1334 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDP--------------ETDALIQKTIREE--FKDCTVLTIAHRL 1334 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCCh--------------HHHHHHHHHHHHH--hcCCeEEEEeecc
Confidence 234566789999999999998754 5566677766553 3344444444444
No 500
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.70 E-value=3.9e-08 Score=92.89 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=82.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----------CCEEEEcCCCCCCCCCHHHHHHccccCCCCCCcccHHHH
Q 023731 44 LHRQPFVIGVAGGAASGKTTVCDMIIQQLHD----------QRVVLVNQDSFYHNLTEQELARVHEYNFDHPDAFDTEKL 113 (278)
Q Consensus 44 ~~~~~~iI~I~G~sGsGKTTla~~L~~~l~~----------~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 113 (278)
.+++|.-+.|.|+||||||||.|+|++.++- .+..++++-+|...-+-++... |.-..+ .+..+.+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~---YP~~~~-~~~d~~l 490 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALC---YPNAAP-DFSDAEL 490 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHh---CCCCCC-CCChHHH
Confidence 8899999999999999999999999999862 2246666666665444433322 222222 2666677
Q ss_pred HHHHHHhhcCCCc--------cccccCCcCCcCCCCCccccCCCcEEEEcccccCCchHH
Q 023731 114 LSSMEKLRHGQAV--------DIPNYDFKSYKNNVFPARRVNPSDVILLEGILVFHDSRV 165 (278)
Q Consensus 114 ~~~l~~~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~iiiidg~~~~~d~~~ 165 (278)
.+.|.+...++-+ --...+.++.++...++..+.+|+++++|+.++.+|++.
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 7777665554321 112556666777777788889999999999999988753
Done!