Query 023732
Match_columns 278
No_of_seqs 114 out of 1234
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05462 Dicty_CAR: Slime mold 100.0 2.2E-38 4.7E-43 271.9 28.5 250 11-267 2-256 (303)
2 KOG4219 G protein-coupled rece 100.0 1.7E-32 3.6E-37 235.5 13.9 263 9-276 29-332 (423)
3 PHA03234 DNA packaging protein 100.0 1.7E-30 3.7E-35 228.9 21.5 246 14-275 31-308 (338)
4 PHA02834 chemokine receptor-li 100.0 3.7E-28 7.9E-33 213.5 19.4 245 13-275 26-301 (323)
5 PHA03235 DNA packaging protein 100.0 2.7E-27 5.9E-32 213.1 25.2 245 14-275 31-315 (409)
6 PHA02638 CC chemokine receptor 99.9 3.3E-25 7.1E-30 200.4 26.7 246 14-276 97-390 (417)
7 PF00001 7tm_1: 7 transmembran 99.9 1.1E-25 2.3E-30 189.4 21.4 229 32-264 1-257 (257)
8 PF02101 Ocular_alb: Ocular al 99.9 1.5E-25 3.2E-30 191.5 19.8 254 15-273 26-320 (405)
9 KOG4193 G protein-coupled rece 99.9 8.3E-24 1.8E-28 196.0 21.4 246 10-268 314-568 (610)
10 PHA03087 G protein-coupled che 99.9 1.7E-23 3.7E-28 184.8 21.4 247 13-275 38-315 (335)
11 PF00002 7tm_2: 7 transmembran 99.9 6.3E-26 1.4E-30 191.5 1.7 230 17-259 2-241 (242)
12 KOG4220 Muscarinic acetylcholi 99.9 1.4E-24 3.1E-29 186.7 3.3 171 16-190 31-222 (503)
13 PF11710 Git3: G protein-coupl 99.8 9.4E-20 2E-24 148.4 16.0 172 19-192 4-198 (201)
14 KOG2087 Glycoprotein hormone r 99.8 2.4E-20 5.2E-25 159.1 4.9 262 4-275 9-298 (363)
15 KOG4564 Adenylate cyclase-coup 99.8 5.6E-19 1.2E-23 157.7 13.3 236 18-268 147-406 (473)
16 PF10320 7TM_GPCR_Srsx: Serpen 99.6 9.3E-15 2E-19 124.3 9.6 240 27-275 2-255 (257)
17 PF01534 Frizzled: Frizzled/Sm 99.5 1.8E-11 3.9E-16 106.5 24.9 171 10-182 3-199 (328)
18 KOG4289 Cadherin EGF LAG seven 99.5 2.1E-13 4.6E-18 131.5 11.9 230 15-268 2162-2391(2531)
19 PF10328 7TM_GPCR_Srx: Serpent 99.1 1.2E-08 2.6E-13 87.7 18.9 241 25-275 3-267 (274)
20 PF05296 TAS2R: Mammalian tast 99.0 4E-07 8.6E-12 79.3 25.1 215 15-229 6-252 (303)
21 PF10324 7TM_GPCR_Srw: Serpent 99.0 8.9E-08 1.9E-12 84.0 19.9 247 24-275 5-313 (318)
22 PF10323 7TM_GPCR_Srv: Serpent 98.9 5.3E-08 1.1E-12 84.0 14.5 245 26-277 5-277 (283)
23 PF10317 7TM_GPCR_Srd: Serpent 98.8 3.9E-06 8.4E-11 72.8 23.6 249 21-275 4-292 (292)
24 PF11970 Git3_C: G protein-cou 98.8 3.3E-08 7.2E-13 67.1 6.6 63 205-267 6-70 (76)
25 PF10321 7TM_GPCR_Srt: Serpent 98.6 1.3E-06 2.9E-11 76.0 15.2 242 13-266 30-292 (313)
26 PF02076 STE3: Pheromone A rec 98.4 0.00014 2.9E-09 62.6 21.6 202 27-233 2-220 (283)
27 PF10292 7TM_GPCR_Srab: Serpen 98.1 0.0066 1.4E-07 53.5 27.1 138 19-156 20-177 (324)
28 PF10327 7TM_GPCR_Sri: Serpent 97.7 0.0089 1.9E-07 52.1 19.7 253 17-275 10-301 (303)
29 PF02118 Srg: Srg family chemo 97.6 0.031 6.8E-07 47.7 22.5 112 26-137 8-142 (275)
30 PF10319 7TM_GPCR_Srj: Serpent 97.5 0.055 1.2E-06 46.8 20.1 243 20-263 9-298 (310)
31 PF10318 7TM_GPCR_Srh: Serpent 97.2 0.12 2.7E-06 44.8 21.8 248 18-275 6-294 (302)
32 PF02117 7TM_GPCR_Sra: Serpent 96.8 0.3 6.6E-06 43.1 24.7 93 20-112 25-134 (328)
33 PF04789 DUF621: Protein of un 96.8 0.28 6.1E-06 41.6 19.8 106 34-139 32-154 (305)
34 PF03402 V1R: Vomeronasal orga 96.3 0.042 9.1E-07 46.7 9.9 90 45-135 6-111 (265)
35 KOG3577 Smoothened and related 95.9 0.051 1.1E-06 51.4 9.0 148 11-158 222-393 (556)
36 PF10326 7TM_GPCR_Str: Serpent 95.4 0.012 2.6E-07 51.3 2.8 92 21-112 4-115 (307)
37 PF02175 7TM_GPCR_Srb: Serpent 94.1 3 6.5E-05 34.7 17.3 42 75-116 81-122 (236)
38 PF03125 Sre: C. elegans Sre G 92.2 8.3 0.00018 34.6 22.3 39 79-117 123-161 (365)
39 PF06681 DUF1182: Protein of u 90.4 1.9 4.2E-05 35.0 7.7 92 22-113 47-151 (226)
40 PF10322 7TM_GPCR_Sru: Serpent 85.6 24 0.00052 30.9 22.7 62 76-137 100-164 (307)
41 PF10316 7TM_GPCR_Srbc: Serpen 85.5 23 0.00049 30.5 21.7 95 17-112 7-114 (273)
42 PF00001 7tm_1: 7 transmembran 69.0 59 0.0013 26.2 10.4 13 243-255 243-255 (257)
43 PF00003 7tm_3: 7 transmembran 53.9 88 0.0019 25.7 8.0 37 72-108 49-85 (238)
44 PF15050 SCIMP: SCIMP protein 36.2 1.3E+02 0.0028 22.3 5.3 19 175-193 22-40 (133)
45 PF15086 UPF0542: Uncharacteri 35.0 1E+02 0.0022 20.6 4.1 25 163-190 26-50 (74)
46 PF03383 Serpentine_r_xa: Caen 30.6 57 0.0012 25.4 2.9 60 80-139 45-108 (153)
47 PF05296 TAS2R: Mammalian tast 30.1 3.7E+02 0.008 23.3 10.6 64 171-234 190-253 (303)
48 PRK09458 pspB phage shock prot 29.5 1.3E+02 0.0027 20.3 4.0 11 190-200 28-38 (75)
49 PF11044 TMEMspv1-c74-12: Plec 23.2 1.8E+02 0.0039 17.4 4.1 7 183-189 24-30 (49)
50 PF14802 TMEM192: TMEM192 fami 23.0 4.6E+02 0.0099 22.0 13.6 36 73-111 49-84 (236)
51 PF11683 DUF3278: Protein of u 20.9 3.6E+02 0.0078 20.1 8.0 16 123-138 37-52 (129)
52 PF10328 7TM_GPCR_Srx: Serpent 20.7 1.6E+02 0.0035 24.9 4.3 26 28-53 3-28 (274)
No 1
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=100.00 E-value=2.2e-38 Score=271.89 Aligned_cols=250 Identities=36% Similarity=0.652 Sum_probs=209.0
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhh-----cCCCCCCcceehhHH
Q 023732 11 TAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV-----GDPSKGFFCSAQGYS 85 (278)
Q Consensus 11 ~~~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~-----~~~~~~~~C~~~~~~ 85 (278)
.++|.+++.++..+.+++|++|+++++++|...|++|++.+++++.++++|++..+..++ ..++++..|++|+++
T Consensus 2 ~~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qafl 81 (303)
T PF05462_consen 2 VKQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAFL 81 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhHH
Confidence 467889999999999999999999999999999999999999999999999998766543 224578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHhhcCCCCCCcceeeEeeCCCcchHHHHH
Q 023732 86 THFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGRTGKAVHFIT 165 (278)
Q Consensus 86 ~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~~~~~y~~~~~~C~~~~~~~~~~~~~~~ 165 (278)
.|++..++.+|+++||++.|+.++++..+.+|+++.+++++||+|++.+++++..+.||+.|.|||++.+. ..+++..
T Consensus 82 iq~f~~as~lWt~~iA~nly~~~~~~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WCWI~~~~--~~~r~~l 159 (303)
T PF05462_consen 82 IQFFMLASFLWTLCIAFNLYLTFVKRYDELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWCWIKPEW--DVWRFAL 159 (303)
T ss_pred HHHhhHHHHHHHHHHHHHhhheeEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCceeecCCC--cchHHHH
Confidence 99999999999999999999999877656788889999999999999999999889999999999998775 4567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCchhHHH
Q 023732 166 FYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWL 245 (278)
Q Consensus 166 f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~~~~~l 245 (278)
|++|+++++..+.+.+....+...+.. ..+.++++++ +.|...++..||++|++||+|..++|+++..+. .++++
T Consensus 160 fY~Pl~ii~~~~~ilv~i~~~~~y~~~--~~~~sd~~~~-~~~~~~kL~~Yp~ifiicw~fa~INRI~~~~~~--~~~~l 234 (303)
T PF05462_consen 160 FYIPLWIIIIISAILVGITMRYIYRVI--RNGVSDNKDK-HLKYQLKLVNYPLIFIICWIFATINRIYNFIGK--NPFWL 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--ccccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHH
Confidence 999998877666554444443333222 2344444432 344455788899999999999999999997753 35789
Q ss_pred HHHHHhhhhhhhHHHHHHHHHH
Q 023732 246 TFLDVGTAALMVNCNDHIFVLF 267 (278)
Q Consensus 246 ~~~~~~l~~~qg~~n~iiy~~~ 267 (278)
.+++..++++||++|+++|++.
T Consensus 235 ~~Lh~~~s~lqGf~nsivy~~n 256 (303)
T PF05462_consen 235 SVLHVGFSPLQGFFNSIVYGYN 256 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999853
No 2
>KOG4219 consensus G protein-coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=235.50 Aligned_cols=263 Identities=15% Similarity=0.171 Sum_probs=199.2
Q ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcC-------CC--CCCcc
Q 023732 9 SLTAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGD-------PS--KGFFC 79 (278)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~-------~~--~~~~C 79 (278)
.++.++....++++..+.+++++||+++++....+|++|+.+|++++|||+||+.++++..+.. .| |+..|
T Consensus 29 ~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C 108 (423)
T KOG4219|consen 29 VLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYC 108 (423)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccccccee
Confidence 3677888999999999999999999999999999999999999999999999999998876532 33 99999
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-h-hhHHHHHHHHHhHHHHHHHHHHhhcCC----CCC---Cccee
Q 023732 80 SAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTD-V-EDLEAMFHLYVWGTSLVVTVVRSFGND----HRH---LGVWC 150 (278)
Q Consensus 80 ~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~-~-~~~~~~~~~~~W~~~~l~~~~~~~~~~----y~~---~~~~C 150 (278)
+++.++......+|.+.|.++|+|||.++++|... . ++..+..++.+|.++++.++|..+..+ |+. +...|
T Consensus 109 ~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~ 188 (423)
T KOG4219|consen 109 RFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVC 188 (423)
T ss_pred eeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEE
Confidence 99999999999999999999999999999998432 2 344568899999999999998876432 222 22345
Q ss_pred ---eEee--CCCcc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc---hhhhHhHHHHHHH
Q 023732 151 ---WTQT--GRTGK---------AVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSD---RAYQFDMKALNRW 213 (278)
Q Consensus 151 ---~~~~--~~~~~---------~~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~k~~~~~ 213 (278)
|.++ +.+.+ ......+++|+.++. ..|..+.++++..+.. ...++ ++.+..+|++|++
T Consensus 189 ~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~----~~Yt~iav~LW~~~~~-gd~~d~~~~~~kak~K~vkml 263 (423)
T KOG4219|consen 189 VTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLG----LAYTVIAVTLWGRRIP-GDQQDRKHEQLKAKKKVVKML 263 (423)
T ss_pred EEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHH----HHHHHHHHHHHhccCc-cchhchhhHHHHHHHHHHHHH
Confidence 4333 11111 112345667777665 7788888888874422 12222 3334456778888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCC----chhHHHHHHHHhhhhhhhHHHHHHHHHHh--hccccccc
Q 023732 214 GYYPLILIGSWAFGTINRIHDFIEPG----HKIFWLTFLDVGTAALMVNCNDHIFVLFF--FGLSFTEI 276 (278)
Q Consensus 214 ~~~~~~f~~~Wlp~~i~~~~~~~~~~----~~~~~l~~~~~~l~~~qg~~n~iiy~~~~--~~~~~~~~ 276 (278)
.+++..|.+||+|+.+..++....++ ....-.+...-.++.++.++||+||++++ |+..|+++
T Consensus 264 iiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~ 332 (423)
T KOG4219|consen 264 IIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRA 332 (423)
T ss_pred HHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhh
Confidence 88899999999999999887643322 22445666788899999999999999864 55566554
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=1.7e-30 Score=228.91 Aligned_cols=246 Identities=13% Similarity=-0.008 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH--hccccccchhhHHHHHHHHHHHHHhhHhhc-----C--CCCCCcceehhH
Q 023732 14 DRRILTALNTGASSLSFVGSGFIVLCYC--LFKELRKFSFKLVFFLALSDMLCSFFSIVG-----D--PSKGFFCSAQGY 84 (278)
Q Consensus 14 ~~~~l~~~~~~~~~lsl~g~~~vi~~~~--~~~~lr~~~~~~i~~La~adll~~~~~~~~-----~--~~~~~~C~~~~~ 84 (278)
+...+..++.++.++|++||.++++++. ++|++|+.+|.+++|||+||++.++...+. . +.|+..|++.++
T Consensus 31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG~~lCk~~~~ 110 (338)
T PHA03234 31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNREALFNFNQAFCQCVLF 110 (338)
T ss_pred HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhHHHHHHH
Confidence 5566889999999999999999999664 445668999999999999999997654431 1 349999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhH--HHHHHHHHhHHHHHHHHHHhhcCCC-C--CCcceeeEeeCCCc-
Q 023732 85 STHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDL--EAMFHLYVWGTSLVVTVVRSFGNDH-R--HLGVWCWTQTGRTG- 158 (278)
Q Consensus 85 ~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~--~~~~~~~~W~~~~l~~~~~~~~~~y-~--~~~~~C~~~~~~~~- 158 (278)
+...+..+|.+.++++|+|||+++++|.+...+. .+...++.|..+++.++|++...+. . +....|....++..
T Consensus 111 ~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~~~~C~~~~~~~~~ 190 (338)
T PHA03234 111 IYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGNYGKCNIHISSKKA 190 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCCCCcCcccCCcchh
Confidence 9999999999999999999999998875432211 1233455699999988888654321 1 12246865433211
Q ss_pred -chHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 023732 159 -KAVH-------FITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTIN 230 (278)
Q Consensus 159 -~~~~-------~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~ 230 (278)
..+. +..|.+|+.++. ++|..+.+++++.+ +++++|.+|....++++|.+||+|+.+.
T Consensus 191 ~~~~~~~~~~~~~~~f~iPl~im~----~cY~~I~~~L~~~~----------~~~~~k~~k~i~~vv~vF~iCWlPy~iv 256 (338)
T PHA03234 191 YDLFIAIKIVFCFIWGIFPTMIFS----FFYVIFCKALHALT----------EKKHKKTLFFIRILILSFLCIQIPNIAI 256 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhh----------hhhhhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 1111 112356666555 77888888776521 1223567777778888999999999998
Q ss_pred HHHHhhc---CC---c---hhHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 231 RIHDFIE---PG---H---KIFWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 231 ~~~~~~~---~~---~---~~~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
.+.+... .+ . .......+...++.+|+++||++|++ .|++|||
T Consensus 257 ~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f--~~~~FR~ 308 (338)
T PHA03234 257 LICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAF--TGGDFRL 308 (338)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHH--hhHHHHH
Confidence 7654321 11 1 11233456778999999999999998 6677775
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=213.46 Aligned_cols=245 Identities=12% Similarity=0.096 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhc------C--CCCCCcceehhH
Q 023732 13 HDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG------D--PSKGFFCSAQGY 84 (278)
Q Consensus 13 ~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~------~--~~~~~~C~~~~~ 84 (278)
+....+..++.++.++|++||+++++.+.+.|+ ++..|.++.|||+||++..+ .+|. . ..|+..|++.++
T Consensus 26 ~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~~~-~lP~~i~~~~~~w~~g~~~C~~~~~ 103 (323)
T PHA02834 26 DVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLMLVF-SFPFIIHNDLNEWIFGEFMCKLVLG 103 (323)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHHHH-HHHHHHHHHcCCcCCcchHHHhHHH
Confidence 344567788899999999999999998877554 45679999999999998643 3331 1 337889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCChh---hHHHHHHHHHhHHHHHHHHHHhhcCCCC--CCcceeeEeeCCCcc
Q 023732 85 STHFFCVASFLWTTTIAFTLHRTVVQHKTDVE---DLEAMFHLYVWGTSLVVTVVRSFGNDHR--HLGVWCWTQTGRTGK 159 (278)
Q Consensus 85 ~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~---~~~~~~~~~~W~~~~l~~~~~~~~~~y~--~~~~~C~~~~~~~~~ 159 (278)
....+..+|.+.++++|+|||.++++|.+..+ +..+.....+|..+++.++|+..+.... +....|....++.+.
T Consensus 104 ~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~~~~~~~~~ 183 (323)
T PHA02834 104 VYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENF 183 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEeccCCccch
Confidence 98889999999999999999999988753222 1223456789999999999876542211 223468532222111
Q ss_pred -h---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023732 160 -A---VH----FITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINR 231 (278)
Q Consensus 160 -~---~~----~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~ 231 (278)
. +. ...|.+|+.++. .+|.++.+++++.++ ++++|..|.+..+++.|.+||+|+.+..
T Consensus 184 ~~~~~~~~~~~i~~f~iPl~ii~----~~Y~~I~~~l~~~~~----------~~~~k~~k~~~~vv~~F~icWlPy~i~~ 249 (323)
T PHA02834 184 SWSAFFNFEINIFGIVIPLIILI----YCYSKILYTLKNCKN----------KNKTRSIKIILTVVTFTVVFWVPFNIVL 249 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccC----------cccceEEeehhHHHHHHHHHHhhHHHHH
Confidence 1 11 234567777665 778888888776321 1123556666777889999999999987
Q ss_pred HHHhhcC-Cc-------hhH--HHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 232 IHDFIEP-GH-------KIF--WLTFLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 232 ~~~~~~~-~~-------~~~--~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
+.....+ +. .+. ....+...++.+|+++||++|++ ++++|||
T Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~--~~~~fR~ 301 (323)
T PHA02834 250 FINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAF--VGKNFKK 301 (323)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHH--hcHHHHH
Confidence 7654321 10 011 12335677999999999999998 5555554
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.96 E-value=2.7e-27 Score=213.14 Aligned_cols=245 Identities=15% Similarity=0.014 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc--ccchhhHHHHHHHHHHHHHhhHhhc----C----CCCCCcceehh
Q 023732 14 DRRILTALNTGASSLSFVGSGFIVLCYCLFKEL--RKFSFKLVFFLALSDMLCSFFSIVG----D----PSKGFFCSAQG 83 (278)
Q Consensus 14 ~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~l--r~~~~~~i~~La~adll~~~~~~~~----~----~~~~~~C~~~~ 83 (278)
......++..++.++|++||+++++.+...++. ++..|.+++|||++|++..+ .++. . ..++..|++.+
T Consensus 31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~-~lP~~i~~~~~~~~~g~~~Ck~~~ 109 (409)
T PHA03235 31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVF-VLPFIMLSNQGLLSGSVAGCKFAS 109 (409)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHH-HHHHHHHhcCccccCCCCeehhHH
Confidence 345678888899999999999999986544443 35668899999999998743 3331 1 12468999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh---hhHHHHHHHHHhHHHHHHHHHHhhc-C-----CCC---CCcceee
Q 023732 84 YSTHFFCVASFLWTTTIAFTLHRTVVQHKTDV---EDLEAMFHLYVWGTSLVVTVVRSFG-N-----DHR---HLGVWCW 151 (278)
Q Consensus 84 ~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~---~~~~~~~~~~~W~~~~l~~~~~~~~-~-----~y~---~~~~~C~ 151 (278)
+....+..+|++.+++||+|||++++++.+.. ++..+..++++|..++++++|+... . .+. +....|.
T Consensus 110 ~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~ 189 (409)
T PHA03235 110 LLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCV 189 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceee
Confidence 99999999999999999999999998764221 2223456788999999999986532 1 111 1234685
Q ss_pred EeeCCCc--c---hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHH
Q 023732 152 TQTGRTG--K---AVHF----ITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIG 222 (278)
Q Consensus 152 ~~~~~~~--~---~~~~----~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~ 222 (278)
...+.+. . .+.+ ..|++|+.++. ++|.++.+++++..+ ++++|..+.+.++++.|++
T Consensus 190 ~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~----~~Y~~I~~~l~~~~~----------~~~~k~~~~v~iivv~F~i 255 (409)
T PHA03235 190 IYFRADQVKTVLSTFKVLLTLVWGIAPVVMMT----WFYTFFYRTLKRASY----------KKRSRTLTFVCILLLSFLC 255 (409)
T ss_pred EeCCchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhh----------hcchhhhhhHHHHHHHHHH
Confidence 4332211 1 1211 23556666665 778888888776321 1123455555666778999
Q ss_pred HhHHHHHHHHHHhhcC----C-----chhHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 223 SWAFGTINRIHDFIEP----G-----HKIFWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 223 ~Wlp~~i~~~~~~~~~----~-----~~~~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
||+|+.+..+++.... . +....+..+...+..+|+++||++|++ +|++|||
T Consensus 256 CWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~--~~~~FRk 315 (409)
T PHA03235 256 LQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAF--LGNDFLK 315 (409)
T ss_pred HHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHH--hhHHHHH
Confidence 9999999887753211 1 112345667888999999999999999 4555554
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.95 E-value=3.3e-25 Score=200.38 Aligned_cols=246 Identities=15% Similarity=0.166 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhh-----cCC--CCCCcceehhHHH
Q 023732 14 DRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV-----GDP--SKGFFCSAQGYST 86 (278)
Q Consensus 14 ~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~-----~~~--~~~~~C~~~~~~~ 86 (278)
....+..++.++.++|++||.++++.+. .|++|+.+|.+++|||++|++..+.... ... .|+..|++.+++.
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~~~~W~fg~~~Ck~~~~l~ 175 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFDQWIFGDFMCKVISASY 175 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhHHHHH
Confidence 3456788899999999999999997765 4888999999999999999987544211 122 3889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChh----hHHHHHHHHHhHHHHHHHHHHhhcCC----------CCC--Cccee
Q 023732 87 HFFCVASFLWTTTIAFTLHRTVVQHKTDVE----DLEAMFHLYVWGTSLVVTVVRSFGND----------HRH--LGVWC 150 (278)
Q Consensus 87 ~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~----~~~~~~~~~~W~~~~l~~~~~~~~~~----------y~~--~~~~C 150 (278)
..+..++.+.++++++|||++++++.+..+ +..+...+.+|+.++++++|+....+ .+. ....|
T Consensus 176 ~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C 255 (417)
T PHA02638 176 YIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQC 255 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCee
Confidence 999999999999999999999998743211 12235567899999999999875321 111 13468
Q ss_pred eEeeCCCc---ch----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHH
Q 023732 151 WTQTGRTG---KA----V----HFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLI 219 (278)
Q Consensus 151 ~~~~~~~~---~~----~----~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 219 (278)
....+... .. + ....+.+|+.+++ ++|.++.+++++.++ ++++|++|.+..+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi----~cY~~I~~~L~~~~~----------~~k~k~~rli~~ivi~ 321 (417)
T PHA02638 256 TLIEDNEKNNISFLGRILQFEINILGMFIPIIIFA----FCYIKIILKLKQLKK----------SKKTKSIIIVSIIIIC 321 (417)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhc----------cccchhhhhHHHHHHH
Confidence 54332211 11 1 1223456666554 888888888765321 1124566777778889
Q ss_pred HHHHhHHHHHHHHHHhhcCC---------c-----hhHHHHHHHHhhhhhhhHHHHHHHHHHhhccccccc
Q 023732 220 LIGSWAFGTINRIHDFIEPG---------H-----KIFWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTEI 276 (278)
Q Consensus 220 f~~~Wlp~~i~~~~~~~~~~---------~-----~~~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~~ 276 (278)
|.+||+|+.+..+++..++. . .......+...++.+++++||++|++ .|++|||.
T Consensus 322 f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f--~~~~FR~~ 390 (417)
T PHA02638 322 SLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTL--IGENFRMH 390 (417)
T ss_pred HHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHH--hCHHHHHH
Confidence 99999999998777543211 0 11122345667899999999999999 77888874
No 7
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.95 E-value=1.1e-25 Score=189.41 Aligned_cols=229 Identities=18% Similarity=0.230 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhc-------C--CCCCCcceehhHHHHHHHHHHHHHHHHHHH
Q 023732 32 GSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG-------D--PSKGFFCSAQGYSTHFFCVASFLWTTTIAF 102 (278)
Q Consensus 32 g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~-------~--~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~ 102 (278)
||.+++..+.+.|++|+..+.++.|||++|++.++...+. + +.++..|++.+++...+..++.+.++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999998775532 1 337799999999999999999999999999
Q ss_pred HHHHHHhccCCChh----hHHHHHHHHHhHHHHHHHHHHhhcCC-CC--C-CcceeeEeeCCCc-c----hHHHHHHHHH
Q 023732 103 TLHRTVVQHKTDVE----DLEAMFHLYVWGTSLVVTVVRSFGND-HR--H-LGVWCWTQTGRTG-K----AVHFITFYAP 169 (278)
Q Consensus 103 ~~y~~i~~~~~~~~----~~~~~~~~~~W~~~~l~~~~~~~~~~-y~--~-~~~~C~~~~~~~~-~----~~~~~~f~~P 169 (278)
|||.++++|.+..+ ++.+...+.+|..+++++.++..+.. .. + ....|+.+.+... . ......+.+|
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~p 160 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYFFIVFFILP 160 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHHHHHHTHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999987754332 23346788999999999999876522 21 1 1467988877642 1 1223345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc----cCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCc--hhH
Q 023732 170 LWGAILYNGFTYFQVIRMLNNATRVAVG----MSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGH--KIF 243 (278)
Q Consensus 170 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~--~~~ 243 (278)
+.++. .+|.++.++.+++.+.... ..+++.++++|..+++..+.+.|.+||+|+.+..+.....++. ...
T Consensus 161 ~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~ 236 (257)
T PF00001_consen 161 LIIIL----ICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISS 236 (257)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHH
T ss_pred eeeee----eecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhH
Confidence 66655 5566666666654442221 1122334456666777788889999999999999887776665 467
Q ss_pred HHHHHHHhhhhhhhHHHHHHH
Q 023732 244 WLTFLDVGTAALMVNCNDHIF 264 (278)
Q Consensus 244 ~l~~~~~~l~~~qg~~n~iiy 264 (278)
....+...+..+++.+||++|
T Consensus 237 ~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 237 ILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEC
Confidence 788889999999999999998
No 8
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=99.94 E-value=1.5e-25 Score=191.50 Aligned_cols=254 Identities=19% Similarity=0.233 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc--cc----cchhhHHHHHHHHHHHHHhhHhh------cCC---------
Q 023732 15 RRILTALNTGASSLSFVGSGFIVLCYCLFKE--LR----KFSFKLVFFLALSDMLCSFFSIV------GDP--------- 73 (278)
Q Consensus 15 ~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~--lr----~~~~~~i~~La~adll~~~~~~~------~~~--------- 73 (278)
..+...+++..+++|+.|.++.++...+... .+ ....+++..|++||++.+++.+. +.+
T Consensus 26 ~~~f~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~ 105 (405)
T PF02101_consen 26 PDAFNAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDV 105 (405)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCC
Confidence 3556677888899999998888875432111 11 12357999999999999988663 111
Q ss_pred -----CCCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHhhcCCCCCCcc
Q 023732 74 -----SKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGV 148 (278)
Q Consensus 74 -----~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~~~~~y~~~~~ 148 (278)
+....|...+...|+++.++++|+++.|+|.|+.+ +++ ..+.....||.++|+.|.+++...+.. -|.|+..
T Consensus 106 ~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~-~~~-ag~~~~~lYH~~aWgl~~lL~~~Gl~~-Ly~Ps~~ 182 (405)
T PF02101_consen 106 NGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVI-RRS-AGRSTIWLYHMMAWGLPALLCAEGLAM-LYYPSIS 182 (405)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee-ecc-CCCcchhHHHHHHHHHHHHHHHhccce-eecCCHH
Confidence 24478999999999999999999999999999998 432 223345799999999999988866433 2445555
Q ss_pred eeeEeeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHH-HHHHHHHHHHHHhHHH
Q 023732 149 WCWTQTGRTGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALN-RWGYYPLILIGSWAFG 227 (278)
Q Consensus 149 ~C~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~f~~~Wlp~ 227 (278)
.|..+.+. .+.++...|+|++++++.|.++|.+..+++.+..+...|...+++++..+++| |.+.+.++|.+||+|.
T Consensus 183 ~Ce~~l~~--alphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpN 260 (405)
T PF02101_consen 183 RCESGLEH--ALPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPN 260 (405)
T ss_pred hhhhhhhh--cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 68544333 45667899999999999999999999998877655544543333323334454 6777888999999999
Q ss_pred HHHHHHHh---hcCCc----------hhHHHHHHHHhhhhhhhHHHHHHH-HHHhhcccc
Q 023732 228 TINRIHDF---IEPGH----------KIFWLTFLDVGTAALMVNCNDHIF-VLFFFGLSF 273 (278)
Q Consensus 228 ~i~~~~~~---~~~~~----------~~~~l~~~~~~l~~~qg~~n~iiy-~~~~~~~~~ 273 (278)
.++.++.+ .+++. ....++++++++||+||++|.++| ..+-...||
T Consensus 261 IINg~LL~~l~~~~~i~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay~gWtg~~l~~ 320 (405)
T PF02101_consen 261 IINGSLLFYLEMQPDINGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAYYGWTGCSLDF 320 (405)
T ss_pred hHhHHHHHHhhcccccccccccchhhHHHHHHHHHHHHhHHHHHHHHHhhccCCCCcccc
Confidence 99877533 22221 245799999999999999999997 555555555
No 9
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=99.92 E-value=8.3e-24 Score=195.98 Aligned_cols=246 Identities=21% Similarity=0.264 Sum_probs=190.6
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcCC--CCCC-cceehhHHH
Q 023732 10 LTAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGDP--SKGF-FCSAQGYST 86 (278)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~~--~~~~-~C~~~~~~~ 86 (278)
.++.....+..+..+++.+|+++.++++++|...|++++..+++..||++|-++.-+.++.+.. +++. .|.+.+++.
T Consensus 314 ~~~~~~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~~~a~ll 393 (610)
T KOG4193|consen 314 EDAVLTLLLDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELLFLLGIDRTSTSVVLCIAAAILL 393 (610)
T ss_pred ccchhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcccccccCcccccHHHHHHH
Confidence 4555677788889999999999999999999999999998899999999998888877777653 3444 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHhHHHHHHHHHHhhc--CC---CCCCcceeeEeeCCCcch
Q 023732 87 HFFCVASFLWTTTIAFTLHRTVVQHKT-DVEDLEAMFHLYVWGTSLVVTVVRSFG--ND---HRHLGVWCWTQTGRTGKA 160 (278)
Q Consensus 87 ~~~~~~s~~~~~~ia~~~y~~i~~~~~-~~~~~~~~~~~~~W~~~~l~~~~~~~~--~~---y~~~~~~C~~~~~~~~~~ 160 (278)
|++.+++++||..++++.|+.++.-.. ..+++...+.+++||.|++++.+.... .. |+..+ .||++.+...
T Consensus 394 hff~LaaF~Wm~leg~hl~~~~v~vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~-~CWl~~~~~~-- 470 (610)
T KOG4193|consen 394 HFFFLAAFFWMLLEGFHLYLLLVEVFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPR-VCWLDTQNGF-- 470 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCC-ceEEecCCce--
Confidence 999999999999999999998876533 234444466689999999999987653 22 55443 3999998754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCc
Q 023732 161 VHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGH 240 (278)
Q Consensus 161 ~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~ 240 (278)
.+.|++|+.+++++|+.+++.+.+++.+.........++. +..+..+.......++.++|........ + +
T Consensus 471 --~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~L~~lLGlTW~fgi~s~~----~-~- 540 (610)
T KOG4193|consen 471 --IWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKL--ENISLIRSALALLFLLGLTWIFGIFSWL----P-G- 540 (610)
T ss_pred --EEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-c-
Confidence 2349999999999999999999988876443322111111 1113344445556678899998887622 2 2
Q ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 023732 241 KIFWLTFLDVGTAALMVNCNDHIFVLFF 268 (278)
Q Consensus 241 ~~~~l~~~~~~l~~~qg~~n~iiy~~~~ 268 (278)
....+.|++.++|.+||++..+.|+++.
T Consensus 541 ~~~v~~YlFti~NalQG~fIFi~~cll~ 568 (610)
T KOG4193|consen 541 TSVVFAYLFTIFNALQGVFIFIFHCLLR 568 (610)
T ss_pred cchHHHHHHHHHHHhhhhHhhHhhhhhh
Confidence 4677999999999999999999999854
No 10
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.92 E-value=1.7e-23 Score=184.81 Aligned_cols=247 Identities=14% Similarity=0.115 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhc------C--CCCCCcceehhH
Q 023732 13 HDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG------D--PSKGFFCSAQGY 84 (278)
Q Consensus 13 ~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~------~--~~~~~~C~~~~~ 84 (278)
++......+..+..+++++||.++++...+. ++|+..|.++.|+|++|++.++..... . ..++..|+..++
T Consensus 38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 116 (335)
T PHA03087 38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVSG 116 (335)
T ss_pred chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 3455677888889999999999999988776 888999999999999999876543321 1 237899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCh----hhHHHHHHHHHhHHHHHHHHHHhhcCCC--CCCcceeeEeeCCCc
Q 023732 85 STHFFCVASFLWTTTIAFTLHRTVVQHKTDV----EDLEAMFHLYVWGTSLVVTVVRSFGNDH--RHLGVWCWTQTGRTG 158 (278)
Q Consensus 85 ~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~----~~~~~~~~~~~W~~~~l~~~~~~~~~~y--~~~~~~C~~~~~~~~ 158 (278)
....+..+|.+.++++|+|||.++++|.++. +++.......+|..+++.+.|+....+. ++....|....++..
T Consensus 117 ~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C~~~~~~~~ 196 (335)
T PHA03087 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYNNKT 196 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceEEecCCCcc
Confidence 9999999999999999999999998774432 2233456678999999888877655332 233456755443221
Q ss_pred chH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHH
Q 023732 159 KAV--------HFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTIN 230 (278)
Q Consensus 159 ~~~--------~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~ 230 (278)
..+ ....+.+|..++ ...|.++.+++++.++ +++++|..|.+...+++|.+||+|+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~lP~~ii----~~~y~~i~~~l~~~~~---------~~~~~k~~k~l~~iv~~f~i~w~P~~i~ 263 (335)
T PHA03087 197 MNWKLFINFEINIIGMLIPLTIL----LYCYSKILITLKGINK---------SKKNKKAIKLVLIIVILFVIFWLPFNVS 263 (335)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccc---------chhcchHHHhHHHHHHHHHHHHHHHHHH
Confidence 111 112234554444 4778888777765321 1233567777788888999999999987
Q ss_pred HHHHhh-----cCC-ch---hHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 231 RIHDFI-----EPG-HK---IFWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 231 ~~~~~~-----~~~-~~---~~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
.+.... .++ .. ......+...+..+++++||++|++ .+++|||
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~--~~~~fr~ 315 (335)
T PHA03087 264 VFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAF--VSEFFNK 315 (335)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--cCHHHHH
Confidence 665432 111 11 1223446677889999999999999 4555554
No 11
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.91 E-value=6.3e-26 Score=191.48 Aligned_cols=230 Identities=23% Similarity=0.307 Sum_probs=9.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcCC--CC------CCcceehhHHHHH
Q 023732 17 ILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGDP--SK------GFFCSAQGYSTHF 88 (278)
Q Consensus 17 ~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~~--~~------~~~C~~~~~~~~~ 88 (278)
++..+..+++.+|++|.++++.++...|++|+.+++++.||++++++..+..+.+.. .+ +..|...+.+.|+
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~~~~~~~~~~~~C~~~a~~~hy 81 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQTFSPISTTNHCLCRAIAILLHY 81 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhccccccccccccchhhhhHhHH
Confidence 567889999999999999999999999999999999999999999999888776642 12 2359999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHhhcC--CCCCCcceeeEeeCCCcchHHHHHH
Q 023732 89 FCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGN--DHRHLGVWCWTQTGRTGKAVHFITF 166 (278)
Q Consensus 89 ~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~~~~--~y~~~~~~C~~~~~~~~~~~~~~~f 166 (278)
+..+++.|+.++++|.|..++++..+.+++.+.+.+++||.|++++.+....+ .||+ +.||.+.++.. .+.+
T Consensus 82 ~~la~f~Wm~~~~~~l~~~~~~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~--~~CWl~~~~~~----~~~f 155 (242)
T PF00002_consen 82 FFLASFFWMLVEAFYLYRLLVKVFNSSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGN--DNCWLSNDWGF----IWAF 155 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhheeEEEeecccchhhheeeeeeecCcceeeeeeeeeccccccc--ccccccCCCce----EEEE
Confidence 99999999999999999999776444455667889999999999999876554 4554 46999885422 4678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCchhHHHH
Q 023732 167 YAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLT 246 (278)
Q Consensus 167 ~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~~~~~l~ 246 (278)
++|..+++.+|.+++..+.++++++.+..+ .+ ++++.+++..+........+.++|+...+. ..++.....+.
T Consensus 156 ~~P~~~~l~in~vi~~~v~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~L~~llg~~w~~~~~~-----~~~~~~~~~~~ 228 (242)
T PF00002_consen 156 VGPVLIILLINIVIFILVLRVLVRKSRSSD-KS-EKKKRRKKILRASLILLPLLGITWLFGILA-----VSDSVDSLVFQ 228 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecccceecccchhheeeEEeehhhhhhhh-hh-hccchhhhHHHHHHHHHHHHHHHheeeeee-----ecccchHHHHH
Confidence 999999999999999888888776444211 11 111111124444444555688899986654 12222356799
Q ss_pred HHHHhhhhhhhHH
Q 023732 247 FLDVGTAALMVNC 259 (278)
Q Consensus 247 ~~~~~l~~~qg~~ 259 (278)
++++++|++||++
T Consensus 229 ~lf~i~nslQG~~ 241 (242)
T PF00002_consen 229 YLFAILNSLQGFF 241 (242)
T ss_dssp -------------
T ss_pred HHHHHHHcCccee
Confidence 9999999999986
No 12
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-24 Score=186.68 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhc-------C--CCCCCcceehhHHH
Q 023732 16 RILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG-------D--PSKGFFCSAQGYST 86 (278)
Q Consensus 16 ~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~-------~--~~~~~~C~~~~~~~ 86 (278)
..+.++...++.+.++||++|++.|-..|++++..|+++++||+||++.+...++. . +-|...|++.-.+.
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalD 110 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALD 110 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHH
Confidence 34556667788889999999999999999999999999999999999998775532 2 34999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhhHH----HHHHHHHhHHHHHHHHHHhhcCCCC-----CCcceeeEeeCCC
Q 023732 87 HFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLE----AMFHLYVWGTSLVVTVVRSFGNDHR-----HLGVWCWTQTGRT 157 (278)
Q Consensus 87 ~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~----~~~~~~~W~~~~l~~~~~~~~~~y~-----~~~~~C~~~~~~~ 157 (278)
.+.+.+|.+.++.|++|||+.+.+|..+..++. ..+++..|++++++-.|..+.+.|- -..+.|.++.-+.
T Consensus 111 YvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFlsn 190 (503)
T KOG4220|consen 111 YVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLSN 190 (503)
T ss_pred HHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeecC
Confidence 999999999999999999999988865543332 3778999999999888776655542 1124697765331
Q ss_pred c-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023732 158 G-KA--VHFITFYAPLWGAILYNGFTYFQVIRMLNN 190 (278)
Q Consensus 158 ~-~~--~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~ 190 (278)
- .. --+..||.|+.++. ++|.+|+|..++
T Consensus 191 p~iTfGTAiAAFYlPVtiM~----~LY~rIyret~k 222 (503)
T KOG4220|consen 191 PAITFGTAIAAFYLPVTIMT----ILYWRIYRETRK 222 (503)
T ss_pred ceeehhHHHHHHHhhHHHHH----HHHHHHHHHHHH
Confidence 1 11 12567899988876 778888877665
No 13
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.84 E-value=9.4e-20 Score=148.41 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=135.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhhHhhcC---------CCCCCcceehhHHHHH
Q 023732 19 TALNTGASSLSFVGSGFIVLCYCLF-KELRKFSFKLVFFLALSDMLCSFFSIVGD---------PSKGFFCSAQGYSTHF 88 (278)
Q Consensus 19 ~~~~~~~~~lsl~g~~~vi~~~~~~-~~lr~~~~~~i~~La~adll~~~~~~~~~---------~~~~~~C~~~~~~~~~ 88 (278)
++..++.+.+|+++.+.++..+... ++.|...++++.||.+||++.++..++.+ +.++..|.+||++.|.
T Consensus 4 r~~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~ 83 (201)
T PF11710_consen 4 RIGSIVISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQV 83 (201)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHH
Confidence 4456778888888877777766543 67788899999999999999998877622 2478999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCh---h-------hHHHHHHHHHhHHHHHHHHHHhhc---CCCCCCcceeeEeeC
Q 023732 89 FCVASFLWTTTIAFTLHRTVVQHKTDV---E-------DLEAMFHLYVWGTSLVVTVVRSFG---NDHRHLGVWCWTQTG 155 (278)
Q Consensus 89 ~~~~s~~~~~~ia~~~y~~i~~~~~~~---~-------~~~~~~~~~~W~~~~l~~~~~~~~---~~y~~~~~~C~~~~~ 155 (278)
+..++.+|.++||+|.|+.+.+++.+. + +.+.....+.|+.|++.+..+..+ +.|++.|.|||++.+
T Consensus 84 g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~ 163 (201)
T PF11710_consen 84 GDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSR 163 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccccCcEEEECCC
Confidence 999999999999999999998872211 1 111233445557777767666544 679999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023732 156 RTGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNAT 192 (278)
Q Consensus 156 ~~~~~~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~ 192 (278)
+ ..+++...++|.++......++|..++.++|++.
T Consensus 164 ~--~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~ 198 (201)
T PF11710_consen 164 Y--EWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRI 198 (201)
T ss_pred c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8 4578899999999999999899988888888743
No 14
>KOG2087 consensus Glycoprotein hormone receptor [Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-20 Score=159.13 Aligned_cols=262 Identities=15% Similarity=0.143 Sum_probs=185.1
Q ss_pred hhhccCCCHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhh-cC------
Q 023732 4 AAVAGSLTAHDR----RILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV-GD------ 72 (278)
Q Consensus 4 ~~~~~~~~~~~~----~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~-~~------ 72 (278)
++.+.++++-|. ..+++..-+++.+.+.||.+++......|...+....++.|||.+|+++++.... +.
T Consensus 9 ~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~ 88 (363)
T KOG2087|consen 9 KPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTR 88 (363)
T ss_pred cCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHH
Confidence 344555666554 3467778889999999999999999888888788888899999999999977542 11
Q ss_pred --------CC-CCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh--hhH--HHHHHHHHhHHHHHHHHHHhh
Q 023732 73 --------PS-KGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDV--EDL--EAMFHLYVWGTSLVVTVVRSF 139 (278)
Q Consensus 73 --------~~-~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~--~~~--~~~~~~~~W~~~~l~~~~~~~ 139 (278)
.| ++..|++.||+..+..-.|.+.++.+++||++.++++.+.. .+. .+...+.+|+.+.+++..|+.
T Consensus 89 gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~ 168 (363)
T KOG2087|consen 89 GEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLF 168 (363)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcccc
Confidence 12 88999999999999999999999999999999998774322 222 246678899999999999988
Q ss_pred c-CCCCCCcceeeEee-CCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHH
Q 023732 140 G-NDHRHLGVWCWTQT-GRTGKA-VHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYY 216 (278)
Q Consensus 140 ~-~~y~~~~~~C~~~~-~~~~~~-~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 216 (278)
+ +.|+.. ..|.--+ ++.... +....+.+--.+.++...+.|.+++..+++..... +. .+.+..+++.++
T Consensus 169 g~s~Y~~~-~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~-----~~--~~~~~akr~a~L 240 (363)
T KOG2087|consen 169 GISSYGAS-SVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA-----TL--ISTSVAKRMAFL 240 (363)
T ss_pred CCCCCccc-ceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc-----cc--chhhhhhCeeEE
Confidence 7 567655 5684322 221122 22233333333333444577887777766521111 11 113567788889
Q ss_pred HHHHHHHhHHHHHHHHHHhhcCCchhHHHH-HHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 217 PLILIGSWAFGTINRIHDFIEPGHKIFWLT-FLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 217 ~~~f~~~Wlp~~i~~~~~~~~~~~~~~~l~-~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
+..-.+||.|.....+....+.+-...... .+-..+-|+|+++||+.|++ +...|||
T Consensus 241 vfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~--fT~~fk~ 298 (363)
T KOG2087|consen 241 VFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAF--FTPVFKE 298 (363)
T ss_pred EEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHH--cCHHHHH
Confidence 999999999999998876665333222222 34557889999999999999 5555554
No 15
>KOG4564 consensus Adenylate cyclase-coupled calcitonin receptor [Signal transduction mechanisms]
Probab=99.80 E-value=5.6e-19 Score=157.71 Aligned_cols=236 Identities=18% Similarity=0.182 Sum_probs=180.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcC---------------------CCCC
Q 023732 18 LTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGD---------------------PSKG 76 (278)
Q Consensus 18 l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~---------------------~~~~ 76 (278)
..+++.++-.+|++..++.+..+..+|++|.++|++..||.++=++.++..++.+ ..+.
T Consensus 147 ~~~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 226 (473)
T KOG4564|consen 147 LKILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNP 226 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 4478899999999999999999999999999999999999999998887766421 1356
Q ss_pred CcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHhhcCCCCCCcceeeEeeCC
Q 023732 77 FFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGR 156 (278)
Q Consensus 77 ~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~~~~~y~~~~~~C~~~~~~ 156 (278)
..|+..-.+.+++..+.++||++.+++.|-.++--...+++.-+.|.+++||+|++++.+-.+..-|-++ ..||...+.
T Consensus 227 ~~Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d-~~CW~~~~~ 305 (473)
T KOG4564|consen 227 VGCKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFSERRYFWLYLLIGWGVPAVFVVVWAIVRLYLED-TGCWDSNDT 305 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeccCccHHHHHHHHhhCCcHHHhhhHHhHheeecc-ccccccCCC
Confidence 7899999999999999999999999999998876544456666789999999999999877665543332 369998775
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHH-HHHHHHHHHHHhHHHHHHHHHHh
Q 023732 157 TGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNR-WGYYPLILIGSWAFGTINRIHDF 235 (278)
Q Consensus 157 ~~~~~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~f~~~Wlp~~i~~~~~~ 235 (278)
... ++..-+|....+++|.+++..|.|.+-+|.|......+++ .+|.+|. +.++|+ |.+..+. -.
T Consensus 306 ~~~---~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~~~---y~K~vKaTLvLIPL-fGI~~il-------f~ 371 (473)
T KOG4564|consen 306 GHI---WWIIRGPILLAILVNFIFLINIVRILVTKLRASNASETDQ---YRKLVKATLVLIPL-FGIHYIL-------FA 371 (473)
T ss_pred cce---EEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccchHH---HHHHHHHHHHHHHH-cCCeeEE-------EE
Confidence 222 3466699999999999999999999887776543222222 4566664 444554 5443221 12
Q ss_pred hcCCc--hhHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 023732 236 IEPGH--KIFWLTFLDVGTAALMVNCNDHIFVLFF 268 (278)
Q Consensus 236 ~~~~~--~~~~l~~~~~~l~~~qg~~n~iiy~~~~ 268 (278)
+.|++ ......+....++++||++.+++||+++
T Consensus 372 ~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN 406 (473)
T KOG4564|consen 372 FRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLN 406 (473)
T ss_pred ecCchHHHHHHHHHHHHHHHhccchheehheeecC
Confidence 23444 2455777899999999999999999964
No 16
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.57 E-value=9.3e-15 Score=124.26 Aligned_cols=240 Identities=14% Similarity=0.108 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcC-------CCCCCcceehhHHHHHHHHHHHHHHHH
Q 023732 27 SLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGD-------PSKGFFCSAQGYSTHFFCVASFLWTTT 99 (278)
Q Consensus 27 ~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~-------~~~~~~C~~~~~~~~~~~~~s~~~~~~ 99 (278)
++|++||...+....+.|++|++.+.++..+|++|++...+.++.. +.....|-.+.+..+++..++...+++
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~Cf~~~~~~~f~~~~qs~~~l~ 81 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFRDHQITRSECFWQIFFYIFFQCAQSVIMLA 81 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999987766432 346778999999999999999999999
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHh-hcC-CCCC-CcceeeEeeCCCcchHHHHHHHHHHHHHHHH
Q 023732 100 IAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRS-FGN-DHRH-LGVWCWTQTGRTGKAVHFITFYAPLWGAILY 176 (278)
Q Consensus 100 ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~-~~~-~y~~-~~~~C~~~~~~~~~~~~~~~f~~P~~~~~~~ 176 (278)
+++||+.+++.|.++.+..+..+....-..|.+.+.... .+. ..++ ....|.....-++....++... ..+....
T Consensus 82 i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~C~pp~a~~~~~~~~~~~~--~~~inv~ 159 (257)
T PF10320_consen 82 IAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYRDDETIVICNPPLAFHGTASQIWSYS--NIIINVI 159 (257)
T ss_pred HHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEecCCcccccCCCccccCccHHHHHHHH--HHHHHHH
Confidence 999999999877544332223344444444544444332 221 1222 2457865544333333222221 1122222
Q ss_pred HHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCc--hhHHHHHHHHhhhh
Q 023732 177 NGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGH--KIFWLTFLDVGTAA 254 (278)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~--~~~~l~~~~~~l~~ 254 (278)
..++|....+..+++.+. ++++++|..|++.+.+..++.+|.-..+........+.+ .......-..++..
T Consensus 160 tvivY~i~~~~~~~k~~~-------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~ 232 (257)
T PF10320_consen 160 TVIVYIITIIIFKRKSRS-------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVN 232 (257)
T ss_pred HHHHHHHHHHHHHHHccc-------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 235555555555553221 222346778888888889999999888876553322222 22234444566777
Q ss_pred hhhHHHHHHHHHHh--hcccccc
Q 023732 255 LMVNCNDHIFVLFF--FGLSFTE 275 (278)
Q Consensus 255 ~qg~~n~iiy~~~~--~~~~~~~ 275 (278)
.+...|..||...+ ||++|+|
T Consensus 233 ~~~s~~ffV~~~~S~EYR~af~~ 255 (257)
T PF10320_consen 233 ISYSQNFFVYYWRSSEYRKAFRE 255 (257)
T ss_pred HHHHHHheEEEEcCHHHHHHHHH
Confidence 77778888886643 5555554
No 17
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=99.51 E-value=1.8e-11 Score=106.53 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhh----cC-------------
Q 023732 10 LTAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV----GD------------- 72 (278)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~----~~------------- 72 (278)
++++|.+.......+.+.++.+.+++++++|...++..+.+.+.++.++++=++.+++++. |.
T Consensus 3 ft~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~ 82 (328)
T PF01534_consen 3 FTQEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTER 82 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCce
Confidence 5778888888888999999999999999999988886678889999999998888887653 11
Q ss_pred ---C--CCCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHhHHHHHHHHHHhhcCCC-C
Q 023732 73 ---P--SKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT--DVEDLEAMFHLYVWGTSLVVTVVRSFGNDH-R 144 (278)
Q Consensus 73 ---~--~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~--~~~~~~~~~~~~~W~~~~l~~~~~~~~~~y-~ 144 (278)
+ .++..|.+...+.+++..++..|..++++.=+++...+-. ..+++...+|+++|++|++.++..+..++. |
T Consensus 83 ~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg 162 (328)
T PF01534_consen 83 ILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDG 162 (328)
T ss_pred eEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhccccc
Confidence 0 1568999999999999999999999999999999854422 124555689999999999999987766553 3
Q ss_pred C-CcceeeEeeCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 023732 145 H-LGVWCWTQTGRTGKAVHFITFYAPLWGAILYNGFTYF 182 (278)
Q Consensus 145 ~-~~~~C~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~ 182 (278)
| -.+.|++..++.. .+.....+|..+.+++......
T Consensus 163 D~ltGiC~Vg~~~~~--~l~~fvl~Pl~i~l~iG~~fL~ 199 (328)
T PF01534_consen 163 DELTGICFVGNQNPS--ALRGFVLAPLFIYLLIGTVFLL 199 (328)
T ss_pred ccccceeEEeCCCHH--HHhHHHHHHHHHHHHHHHHHHH
Confidence 3 3567999887733 3345677898877766644433
No 18
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=99.49 E-value=2.1e-13 Score=131.50 Aligned_cols=230 Identities=17% Similarity=0.211 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcCCCCCCcceehhHHHHHHHHHHH
Q 023732 15 RRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGDPSKGFFCSAQGYSTHFFCVASF 94 (278)
Q Consensus 15 ~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~ 94 (278)
...+.+...+...+++..+++.++.....|.+|+..+.+-.||+.|--+..+.++.+...+...|.+.+.+.++.+.+.|
T Consensus 2162 ~~~l~~~t~a~~gvslaal~lt~~llls~RsLksn~~~I~~~l~~Al~l~~L~Fv~gi~~nq~~CtvvailLhf~~~stF 2241 (2531)
T KOG4289|consen 2162 ALPLKMTTYAAVGVSLAALLLTFLLLLSLRSLKSNSHGIHFNLAAALGLAQLVFVLGINQNQFYCTVVAILLHFTYLSTF 2241 (2531)
T ss_pred eehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhHHHHHhhhhcccCchhhHHHHHHHHHHHhhhH
Confidence 34567777888889999999999888888999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHhhcCCCCCCcceeeEeeCCCcchHHHHHHHHHHHHHH
Q 023732 95 LWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGRTGKAVHFITFYAPLWGAI 174 (278)
Q Consensus 95 ~~~~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~~~~~y~~~~~~C~~~~~~~~~~~~~~~f~~P~~~~~ 174 (278)
-|++..+++.|+..+... ...-++.++.++|++|++++...++.. .+||++.+.+- ++.|.+|+...+
T Consensus 2242 aWlfl~gLhlYRml~e~v--~tg~mrfy~~vGwgvPa~itglavgld------DfCwlS~h~~L----iWsfagPigl~i 2309 (2531)
T KOG4289|consen 2242 AWLFLEGLHLYRMLTENV--DTGPMRFYYLVGWGVPALITGLAVGLD------DFCWLSPHDTL----IWSFAGPIGLVI 2309 (2531)
T ss_pred HHHHHHHHHHHHHHhccC--CCCceeEEEEeecchhhheeeeeeccc------ceeecccchhe----eeeecccceeee
Confidence 999999999999997632 244567889999999999888765333 67999877632 678899998888
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCchhHHHHHHHHhhhh
Q 023732 175 LYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAA 254 (278)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~~~~~l~~~~~~l~~ 254 (278)
+.+...+..-.+.-..++..- ..+|-.-+..+..+...+....+|+...+.. .+.+..+.|+++.+..
T Consensus 2310 ~ms~~~~~lsa~vSc~~k~~~-----f~kK~~v~~lq~~fl~llllsatwl~~ll~v-------n~~~l~fhyl~a~~~~ 2377 (2531)
T KOG4289|consen 2310 LMSFYAAALSARVSCHKKYQV-----FVKKGNVSVLQHSFLLLLLLSATWLLGLLAV-------NPDPLEFHYLFASIIG 2377 (2531)
T ss_pred hHHHHHHHHHHHHhhhhhhee-----eeeccchhhhHHHHHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHH
Confidence 877777766555433221110 0111112344455555556667898777651 3335679999999999
Q ss_pred hhhHHHHHHHHHHh
Q 023732 255 LMVNCNDHIFVLFF 268 (278)
Q Consensus 255 ~qg~~n~iiy~~~~ 268 (278)
+||.+.-+.||..+
T Consensus 2378 lqg~~Vlll~cVl~ 2391 (2531)
T KOG4289|consen 2378 LQGPFVLLLWCVLN 2391 (2531)
T ss_pred hhhHHHHHHHhhhc
Confidence 99999999999843
No 19
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.11 E-value=1.2e-08 Score=87.71 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=135.2
Q ss_pred hhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhc-------C-CC-CCCccee-hhHHHHHHHHHHH
Q 023732 25 ASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVG-------D-PS-KGFFCSA-QGYSTHFFCVASF 94 (278)
Q Consensus 25 ~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~-------~-~~-~~~~C~~-~~~~~~~~~~~s~ 94 (278)
.+..|++.|.+++..+.+.|++|+.-+.+-.+.+++|.+..+..... + +. .+..... .|.....++..+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999988888899999999988765421 1 11 2222333 3778888888899
Q ss_pred HHHHHHHHHHHHHHhccCCChh----hHHHHHHHHHhHHHHHHHHHHhhcC----CCCCCcceeeEe-eCCCcchHHH--
Q 023732 95 LWTTTIAFTLHRTVVQHKTDVE----DLEAMFHLYVWGTSLVVTVVRSFGN----DHRHLGVWCWTQ-TGRTGKAVHF-- 163 (278)
Q Consensus 95 ~~~~~ia~~~y~~i~~~~~~~~----~~~~~~~~~~W~~~~l~~~~~~~~~----~y~~~~~~C~~~-~~~~~~~~~~-- 163 (278)
..-..+|+||+.++..|.++.+ +..+....+.|..+.....+..... .|.+ ..+-|.- ++++-..+..
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~-~~~~~~~~~~~~C~~~~~~~ 161 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDP-ETWSWSYPTDPPCGNYSWYF 161 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceecc-ceeeeecCCCCccchhhhHH
Confidence 9999999999999987754332 2334678899999886666554322 1222 2344442 2111111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCch
Q 023732 164 --ITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPGHK 241 (278)
Q Consensus 164 --~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~~ 241 (278)
....+-..+....+...+.++++.-++. +....++++++++|.+-.+|...--..+.+.++-+....-+ .++
T Consensus 162 ~~~~~~~~~~~~~~lni~t~ikl~~~~~~~-~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~~-- 235 (274)
T PF10328_consen 162 DFYKNFILVIISNILNIITFIKLRKFRKKI-SVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SSN-- 235 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc--
Confidence 1111222333334555566555544433 11111222222233333334444344666666666555222 112
Q ss_pred hHHHHHH-HHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 242 IFWLTFL-DVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 242 ~~~l~~~-~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
.+...+ ....-.+.-.+|++|+.. |+.++|+
T Consensus 236 -~~~~F~~~t~~w~~~h~~DG~i~l~--fN~~~r~ 267 (274)
T PF10328_consen 236 -RWWQFFCTTFSWVLVHALDGLIMLI--FNSEIRR 267 (274)
T ss_pred -cHHHHHHHHHHHHHHHHhcceeEeE--EcHHHHH
Confidence 222222 222233334468888776 5555554
No 20
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.03 E-value=4e-07 Score=79.32 Aligned_cols=215 Identities=13% Similarity=0.122 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHh---ccccccchhhHHHHHHHHHHHHHhhHhhc------CC---CCCCcceeh
Q 023732 15 RRILTALNTGASSLSFVGSGFIVLCYCL---FKELRKFSFKLVFFLALSDMLCSFFSIVG------DP---SKGFFCSAQ 82 (278)
Q Consensus 15 ~~~l~~~~~~~~~lsl~g~~~vi~~~~~---~~~lr~~~~~~i~~La~adll~~~~~~~~------~~---~~~~~C~~~ 82 (278)
+....++..+..++|++||++++..... +++.-++.+.++.+|++++++........ .+ ..+..++..
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence 4455677788899999999999887752 22222577889999999999876543321 12 356678888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh----hhH-H---HHHHHHHhHHHHH--HHHHHhhcCCC-----CCCc
Q 023732 83 GYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDV----EDL-E---AMFHLYVWGTSLV--VTVVRSFGNDH-----RHLG 147 (278)
Q Consensus 83 ~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~----~~~-~---~~~~~~~W~~~~l--~~~~~~~~~~y-----~~~~ 147 (278)
.++-.++...|++..+..++.-+.-++..++.- +++ . ....+.++..++. ...+....... .+.+
T Consensus 86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~~~~~~ 165 (303)
T PF05296_consen 86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNNTNNSR 165 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeccccccCCC
Confidence 888888888888888889988888886554311 111 1 1334556666662 22222222111 1112
Q ss_pred ceeeEeeCCCcc-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHH
Q 023732 148 VWCWTQTGRTGK-A----VHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIG 222 (278)
Q Consensus 148 ~~C~~~~~~~~~-~----~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~ 222 (278)
+..+...++... . .......+|+.+.+.....+....+||.|+-++..+|.++.+.+.+.|+.|.+....+.|..
T Consensus 166 N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~ 245 (303)
T PF05296_consen 166 NSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYII 245 (303)
T ss_pred cceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 222222222111 1 11245668888888777777888889988866655666666777778888887777766776
Q ss_pred HhHHHHH
Q 023732 223 SWAFGTI 229 (278)
Q Consensus 223 ~Wlp~~i 229 (278)
+++-..+
T Consensus 246 ~~~~~~~ 252 (303)
T PF05296_consen 246 YFLSLIL 252 (303)
T ss_pred HHHHHHH
Confidence 5554443
No 21
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.99 E-value=8.9e-08 Score=84.02 Aligned_cols=247 Identities=11% Similarity=0.003 Sum_probs=143.7
Q ss_pred HhhHHHHHHHHHHHHHHHhcccccc-chhhHHHHHHHHHHHHHhhHhhcC------CCCCCcce------------ehhH
Q 023732 24 GASSLSFVGSGFIVLCYCLFKELRK-FSFKLVFFLALSDMLCSFFSIVGD------PSKGFFCS------------AQGY 84 (278)
Q Consensus 24 ~~~~lsl~g~~~vi~~~~~~~~lr~-~~~~~i~~La~adll~~~~~~~~~------~~~~~~C~------------~~~~ 84 (278)
..+.+|+++|.+-+.... +|++|+ ..|.++..+|++|++..+..++.. ...+..|. ....
T Consensus 5 ~~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 467888999988877554 578887 689999999999999887755422 11244453 3355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCh-h-----hHHHHHHHHHhHHHHHHHHHHhhcCCCCC------CcceeeE
Q 023732 85 STHFFCVASFLWTTTIAFTLHRTVVQHKTDV-E-----DLEAMFHLYVWGTSLVVTVVRSFGNDHRH------LGVWCWT 152 (278)
Q Consensus 85 ~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~-~-----~~~~~~~~~~W~~~~l~~~~~~~~~~y~~------~~~~C~~ 152 (278)
+...+-..|.+-...+|+.|++++.+|.... + +.......++...+.++..+.....+..+ ....|.-
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~ 163 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceee
Confidence 6666777888888999999999996553211 1 11123455566666666666554332211 1235851
Q ss_pred -eeC---CC------------cc-hHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHH
Q 023732 153 -QTG---RT------------GK-AVHFI-------TFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMK 208 (278)
Q Consensus 153 -~~~---~~------------~~-~~~~~-------~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k 208 (278)
+.+ +. +. ..... .-.+|..... +.-....+++|+.++..++.++++++++.+
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~----ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~ 239 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLP----ILTILLIIELRKAKKRRKKLSSSKSKKSDR 239 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHH----HHHHHHHHHHHhccHhhhcccccccccccc
Confidence 110 00 00 00111 1234444433 333344444444332222221111111223
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCch-----hHHHHHHHHhhhhhhhHHHHHHHHHHh--hcccccc
Q 023732 209 ALNRWGYYPLILIGSWAFGTINRIHDFIEPGHK-----IFWLTFLDVGTAALMVNCNDHIFVLFF--FGLSFTE 275 (278)
Q Consensus 209 ~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~~~-----~~~l~~~~~~l~~~qg~~n~iiy~~~~--~~~~~~~ 275 (278)
..+....+.+.|.++=+|..+..+++...+++. ...+..+...+..+|+..|+++|++++ |++.++|
T Consensus 240 tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~ 313 (318)
T PF10324_consen 240 TTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKK 313 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHH
Confidence 444445566799999999999988866432221 334666778888999999999999875 4554444
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.90 E-value=5.3e-08 Score=84.02 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHhcccc----ccchhhHHHHHHHHHHHHHhhHhhcC-----C--------CCCCcceehhHHHHH
Q 023732 26 SSLSFVGSGFIVLCYCLFKEL----RKFSFKLVFFLALSDMLCSFFSIVGD-----P--------SKGFFCSAQGYSTHF 88 (278)
Q Consensus 26 ~~lsl~g~~~vi~~~~~~~~l----r~~~~~~i~~La~adll~~~~~~~~~-----~--------~~~~~C~~~~~~~~~ 88 (278)
+.+++.--..++....+.|+. +++-.+++.+-+++|++..+...... + .++..-++.-....+
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 445556666666666665543 35566788999999999987755321 1 133333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCh-hh----HHHHHHHHHhHHHHHHHHHHhhcCC--CCCCcceeeEeeCCCcch-
Q 023732 89 FCVASFLWTTTIAFTLHRTVVQHKTDV-ED----LEAMFHLYVWGTSLVVTVVRSFGND--HRHLGVWCWTQTGRTGKA- 160 (278)
Q Consensus 89 ~~~~s~~~~~~ia~~~y~~i~~~~~~~-~~----~~~~~~~~~W~~~~l~~~~~~~~~~--y~~~~~~C~~~~~~~~~~- 160 (278)
.......-.+.+|++||.++++|..+. +. ..+...++-|..|++++++.....+ |++..+ .....+.+..
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~--~~~~~d~~~~~ 162 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN--MSLFVDPEFIQ 162 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc--eeeecCHHHHH
Confidence 555566667799999999998876222 21 2236678899999999987654433 333332 1111111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 023732 161 -VHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHDFIEPG 239 (278)
Q Consensus 161 -~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~~~~ 239 (278)
........ ..+..+...++|..+...+||+.|.+....++++++|.+...+..+...++.+.-.-+ +...+. ..++
T Consensus 163 ~~~~~~~~~-~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~-~~~~ 239 (283)
T PF10323_consen 163 RNFLIAFIF-VSVTCVICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYF-AQNF 239 (283)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHH-Hhcc
Confidence 10111111 1122223345566666666654332211122222233333323333333333222222 222211 2222
Q ss_pred chh--HHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccc
Q 023732 240 HKI--FWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTEIC 277 (278)
Q Consensus 240 ~~~--~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~~~ 277 (278)
+.. ..+--.--.++-..+..||. .+.-+++|.||-+
T Consensus 240 ~~~~~~~~r~~y~~~~~~~s~inP~--~LLi~n~~lr~~~ 277 (283)
T PF10323_consen 240 NTDPIFYLRAFYPILNGLLSFINPW--MLLIFNKDLRKQV 277 (283)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhH--HhhhccHHHHHHH
Confidence 222 22222455566666677875 5666999998854
No 23
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.82 E-value=3.9e-06 Score=72.83 Aligned_cols=249 Identities=10% Similarity=0.037 Sum_probs=133.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhhHhhcC----------------C---CCCCcce
Q 023732 21 LNTGASSLSFVGSGFIVLCYCL-FKELRKFSFKLVFFLALSDMLCSFFSIVGD----------------P---SKGFFCS 80 (278)
Q Consensus 21 ~~~~~~~lsl~g~~~vi~~~~~-~~~lr~~~~~~i~~La~adll~~~~~~~~~----------------~---~~~~~C~ 80 (278)
...+.+.+|+..|.+.+....+ .|+.-+.-..++.|-|+.|++.++...... | .|+..|.
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~ 83 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFCF 83 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHHH
Confidence 3456788899999888876653 344334455688999999999987754321 1 2677887
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHhHHHHHHHHHHhhc-----------CCCCCCcce
Q 023732 81 AQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAMFHLYVWGTSLVVTVVRSFG-----------NDHRHLGVW 149 (278)
Q Consensus 81 ~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~~~~~~~W~~~~l~~~~~~~~-----------~~y~~~~~~ 149 (278)
..-.+.+.+...+..++..--..||..+.++.. .++.........+..++......... ++.+++.+.
T Consensus 84 ~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~ 162 (292)
T PF10317_consen 84 FCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNL 162 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCccccc
Confidence 777788888888888888888899999955433 22333344455555555554433211 011121110
Q ss_pred --eeEee-CCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccCchhhhHhHHHHHHHHHHHHHHHH
Q 023732 150 --CWTQT-GRTGKA---VHFITFYAPLWGAILYNGFTYFQVIRMLNNATR-VAVGMSDRAYQFDMKALNRWGYYPLILIG 222 (278)
Q Consensus 150 --C~~~~-~~~~~~---~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~f~~ 222 (278)
-...+ .+.... .......++.... . +..+..+|++.+..+ .....|++.++.+++-++-+.+=...=.+
T Consensus 163 ~~~~i~G~~~~~~~~~~~~~~~~~~~~~~~---~-i~~~~~R~ki~~~L~~~~~~~S~~tk~~h~~lv~~Lt~Q~~lP~~ 238 (292)
T PF10317_consen 163 ENYSISGFSDISSPPSLINILIMTIPIFPI---P-IVIFFLRRKILKFLNKKSSSMSERTKSMHRQLVKGLTIQALLPLF 238 (292)
T ss_pred ccceeeeecchhhHHHHHHHHHHHHhhHHH---H-HHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 01111 111111 1111111111111 1 222233444443333 23345555555555555543321222223
Q ss_pred HhHHHHHHHHHHhhcCCchhHHHHHHHHhhhhhhhHHHHHHH--HHHhhcccccc
Q 023732 223 SWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMVNCNDHIF--VLFFFGLSFTE 275 (278)
Q Consensus 223 ~Wlp~~i~~~~~~~~~~~~~~~l~~~~~~l~~~qg~~n~iiy--~~~~~~~~~~~ 275 (278)
+-.|.....+....+..+ ....+++......+-..+||++. .+.=|++.++|
T Consensus 239 ~~~p~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 239 FYIPGVIIYFLSQFTGYE-HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 445566655554444333 45678888888889999999986 44445554443
No 24
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=98.75 E-value=3.3e-08 Score=67.07 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=51.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh--cCCchhHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023732 205 FDMKALNRWGYYPLILIGSWAFGTINRIHDFI--EPGHKIFWLTFLDVGTAALMVNCNDHIFVLF 267 (278)
Q Consensus 205 ~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~~~--~~~~~~~~l~~~~~~l~~~qg~~n~iiy~~~ 267 (278)
+-+|+++.|++||++++++|+.+.+....++. .+.+++.++.++++.+.++||+.|.++|.++
T Consensus 6 ~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~ 70 (76)
T PF11970_consen 6 RIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLR 70 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeee
Confidence 34568889999999999999966666565555 3455679999999999999999999999864
No 25
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.65 E-value=1.3e-06 Score=76.00 Aligned_cols=242 Identities=14% Similarity=0.105 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhH-hh-c--CCCCCCcceehhHHHHH
Q 023732 13 HDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFS-IV-G--DPSKGFFCSAQGYSTHF 88 (278)
Q Consensus 13 ~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~-~~-~--~~~~~~~C~~~~~~~~~ 88 (278)
.++..+.+...+.+++..+-....+..+.+.++.|.+.+++++.|++.|++..... +. | .-.|...|+-..+....
T Consensus 30 ~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~G~vfC~~P~~~~i~ 109 (313)
T PF10321_consen 30 VKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIFGAVFCSYPRFIYIM 109 (313)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCccccCCchHhhhh
Confidence 34556777777777777777777888777777777899999999999999986443 22 1 13477788776665555
Q ss_pred HHHHHHHH------HHHHHHHHHHHHhccCCChh---hHH-H--HHHHHHhHHHHHHHHHHhhcCCCCCCcceeeEeeCC
Q 023732 89 FCVASFLW------TTTIAFTLHRTVVQHKTDVE---DLE-A--MFHLYVWGTSLVVTVVRSFGNDHRHLGVWCWTQTGR 156 (278)
Q Consensus 89 ~~~~s~~~------~~~ia~~~y~~i~~~~~~~~---~~~-~--~~~~~~W~~~~l~~~~~~~~~~y~~~~~~C~~~~~~ 156 (278)
+..+--.| ...+|+||...+..+..... +++ . ....+.++.-..+-.+|...+ ....+|.-++.
T Consensus 110 G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fn----s~~~sw~fDP~ 185 (313)
T PF10321_consen 110 GCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFN----SEYMSWFFDPM 185 (313)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCC----CCcceEecCcc
Confidence 55544444 45788899888855432211 111 1 223334433322222333221 12234443221
Q ss_pred -----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023732 157 -----TGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINR 231 (278)
Q Consensus 157 -----~~~~~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~ 231 (278)
..+.|.=.....--.........+|..+...++++.+.. .+++..+.++|..-|..++.....+.++-+..++
T Consensus 186 i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~--~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~ 263 (313)
T PF10321_consen 186 IFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS--TSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQ 263 (313)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 111111111111122233334566766666666654432 2333344455566676677777777766665543
Q ss_pred HHHhhcCCchhHHHHHHHHhhhhhhhHHHHHHHHH
Q 023732 232 IHDFIEPGHKIFWLTFLDVGTAALMVNCNDHIFVL 266 (278)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~l~~~qg~~n~iiy~~ 266 (278)
. .. .+.++..+..+.=-++.-.+|+||..
T Consensus 264 f---~~---~p~~~i~~~~~~Wql~~g~~~iIYl~ 292 (313)
T PF10321_consen 264 F---FP---PPPWLIIIGQISWQLSHGCPPIIYLT 292 (313)
T ss_pred e---ec---ccHHHHHHHHHHHhccCCccceEEEE
Confidence 2 22 24456666666666777789999876
No 26
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.43 E-value=0.00014 Score=62.59 Aligned_cols=202 Identities=13% Similarity=0.089 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHH-hccccccchhhHHHHHHHHHHHHHhhHhhcCC----CCCCcceehhHHHHHHHHHHHHHHHHHH
Q 023732 27 SLSFVGSGFIVLCYC-LFKELRKFSFKLVFFLALSDMLCSFFSIVGDP----SKGFFCSAQGYSTHFFCVASFLWTTTIA 101 (278)
Q Consensus 27 ~lsl~g~~~vi~~~~-~~~~lr~~~~~~i~~La~adll~~~~~~~~~~----~~~~~C~~~~~~~~~~~~~s~~~~~~ia 101 (278)
++|.+|.++.+.... +.|..+..+--+++.+.++++...+..++... +-+..|++..-+..-...+-....++|+
T Consensus 2 ~~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~~n~~~~~~~wCDI~~kl~~~~~~g~~~a~lcI~ 81 (283)
T PF02076_consen 2 VFSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWRDNDINWWPVWCDISTKLIIGSSVGIPAASLCIM 81 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCceeeeehHHHHHHHHHHHHHHHHHHH
Confidence 356777777777664 44444445556889999999999988887542 3568999999999988888888888888
Q ss_pred HHHHHHHhccCC---C-hhhHHH--HHHHHHhHHHHHHHHHHhh--cCCCC-CCcceeeEeeCCCcchHHHHHHHHHHHH
Q 023732 102 FTLHRTVVQHKT---D-VEDLEA--MFHLYVWGTSLVVTVVRSF--GNDHR-HLGVWCWTQTGRTGKAVHFITFYAPLWG 172 (278)
Q Consensus 102 ~~~y~~i~~~~~---~-~~~~~~--~~~~~~W~~~~l~~~~~~~--~~~y~-~~~~~C~~~~~~~~~~~~~~~f~~P~~~ 172 (278)
-+.|... ..+. . .+|+++ .=..+++|.|++....... +++|. -++.-|.-...+.. ..+..+++|-.+
T Consensus 82 r~L~~I~-s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~--~~~~l~~iwp~i 158 (283)
T PF02076_consen 82 RRLYRIA-SARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSW--PTIFLFIIWPPI 158 (283)
T ss_pred HHHHHHh-ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCH--HHHHHHHHHHHH
Confidence 8888644 3322 1 123333 2368899999888886644 46665 22334866555422 224455555444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-c--cccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 023732 173 AILYNGFTYFQVIRMLNNATRV-A--VGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIH 233 (278)
Q Consensus 173 ~~~~~~~~~~~i~~~~~~~~~~-~--~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~ 233 (278)
..++..+.-....++..+++++ + .+.++.. -.+++..++..+.++.+++.+|..+..+.
T Consensus 159 ~~lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~--l~~~Rf~RL~~la~~~i~~~~P~~i~~~v 220 (283)
T PF02076_consen 159 FSLIAAVYAILTLRRFIRRRKQFRDILSSSNSG--LNTSRFFRLLALALVIILIYLPLSIYYLV 220 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322222222332221111 1 1111111 11223345666666777889998888776
No 27
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.07 E-value=0.0066 Score=53.49 Aligned_cols=138 Identities=12% Similarity=0.033 Sum_probs=76.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhh----------c-C-C----CCCCcceeh
Q 023732 19 TALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIV----------G-D-P----SKGFFCSAQ 82 (278)
Q Consensus 19 ~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~----------~-~-~----~~~~~C~~~ 82 (278)
..+..+.+.+++..+...++.+...+..|.-..-++....++.++.+++.+. . . + .+..-|-..
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l 99 (324)
T PF10292_consen 20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL 99 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence 3344555555555555554444444444444444555556666666544321 1 1 1 155567666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHH---HHHHHHhHHHHHHHHHHhhcCCC-CCCcceeeEeeCC
Q 023732 83 GYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEA---MFHLYVWGTSLVVTVVRSFGNDH-RHLGVWCWTQTGR 156 (278)
Q Consensus 83 ~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~---~~~~~~W~~~~l~~~~~~~~~~y-~~~~~~C~~~~~~ 156 (278)
-....++...+.....++++||+.|..+.+.++++..+ ....+-|..++..........+. ++.-..|....+.
T Consensus 100 R~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~~~~~~~~~~~~yC~~~~~~ 177 (324)
T PF10292_consen 100 RIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLILYFVYSDEDFPNERMYYCQASSSS 177 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhccCccceeeEEecCC
Confidence 77778888888899999999999999766555443332 22333344444433333222333 3334679876554
No 28
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.75 E-value=0.0089 Score=52.15 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=122.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-HhccccccchhhHH---HHHHHHHHHHHhhHhhc--CC-----CCCCcceehhHH
Q 023732 17 ILTALNTGASSLSFVGSGFIVLCY-CLFKELRKFSFKLV---FFLALSDMLCSFFSIVG--DP-----SKGFFCSAQGYS 85 (278)
Q Consensus 17 ~l~~~~~~~~~lsl~g~~~vi~~~-~~~~~lr~~~~~~i---~~La~adll~~~~~~~~--~~-----~~~~~C~~~~~~ 85 (278)
-+...+-++..+|++-|.+++... .+.+++.+..+.++ +...+.|+-.++..-+- .| ..+..|+..+.-
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i~ 89 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGIS 89 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCCc
Confidence 344567778999999999998755 45667777776655 55666788777654321 12 133444443333
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHhccCCC--h-hhHHHHHHHHHhHHHHHHHHHHhh-cCC------CC-CCc
Q 023732 86 THF-------FCVASFLWTTTIAFTLHRTVVQHKTD--V-EDLEAMFHLYVWGTSLVVTVVRSF-GND------HR-HLG 147 (278)
Q Consensus 86 ~~~-------~~~~s~~~~~~ia~~~y~~i~~~~~~--~-~~~~~~~~~~~W~~~~l~~~~~~~-~~~------y~-~~~ 147 (278)
.++ ......-.+..-=+.|+.++.+.... . +........+....|......-.. +.+ |- +..
T Consensus 90 ~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~ny 169 (303)
T PF10327_consen 90 SHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENY 169 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 333 22333333333344666666543211 1 222223344455555554442211 110 10 111
Q ss_pred cee--eE-eeCC-----CcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHH
Q 023732 148 VWC--WT-QTGR-----TGKAVHFITF--YAPLWGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYP 217 (278)
Q Consensus 148 ~~C--~~-~~~~-----~~~~~~~~~f--~~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 217 (278)
+.| |+ +.++ .+........ ..-..........+...+.|.+++.++ ..|++..+++|++++.+..=.
T Consensus 170 P~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~---~iS~~ty~kHk~av~SLi~Q~ 246 (303)
T PF10327_consen 170 PEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKK---KISKQTYQKHKEAVRSLIAQF 246 (303)
T ss_pred CchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHH
Confidence 223 11 0100 0111111000 011111111223334555555554322 334455566677777655433
Q ss_pred HHHHHHhHHHHHHHHHHhhcCCchhHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 218 LILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 218 ~~f~~~Wlp~~i~~~~~~~~~~~~~~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
.+-.+|-+|..+....-..+.++ .............+++..|.++-.+ ..-.|||
T Consensus 247 ~~~~i~~~P~~~~~~~~~~~~~~-~q~i~~~~~~~f~~HS~~n~ivli~--t~ppYR~ 301 (303)
T PF10327_consen 247 ATSSICILPPFIFVVVVIFEFED-AQVISEICLAIFSSHSSVNMIVLII--TTPPYRK 301 (303)
T ss_pred HHHHHHHHHHHHhhhhheecCCC-cHHHHHHHHHHHHHhhHhhheeeeE--cCcchhh
Confidence 33344558888876654444333 3345555566777888889988766 3444444
No 29
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.64 E-value=0.031 Score=47.74 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHhccc--c-ccchhhHHHHHHHHHHHHHhhHhhc-----C------------CCCCCcceehhHH
Q 023732 26 SSLSFVGSGFIVLCYCLFKE--L-RKFSFKLVFFLALSDMLCSFFSIVG-----D------------PSKGFFCSAQGYS 85 (278)
Q Consensus 26 ~~lsl~g~~~vi~~~~~~~~--l-r~~~~~~i~~La~adll~~~~~~~~-----~------------~~~~~~C~~~~~~ 85 (278)
.+.|++-...++....+.|+ . ++.-.++...=++.|++.-+...+. . ++.+...++.-++
T Consensus 8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l 87 (275)
T PF02118_consen 8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL 87 (275)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence 34566666667776666665 3 3333333333333344333322211 0 1255567777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHH---HHHHHHhHHHHHHHHHH
Q 023732 86 THFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEA---MFHLYVWGTSLVVTVVR 137 (278)
Q Consensus 86 ~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~---~~~~~~W~~~~l~~~~~ 137 (278)
.+++..+.......+++||+.++..|.+.++..++ ...++...+|+......
T Consensus 88 ~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~ 142 (275)
T PF02118_consen 88 QYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNI 142 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHH
Confidence 88999999999999999999999776544432222 34566777776554433
No 30
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.47 E-value=0.055 Score=46.80 Aligned_cols=243 Identities=12% Similarity=0.037 Sum_probs=115.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhccccccchh-hHHHHHHHHHHHHHhhHhhc--C---C--------CCCCcceehhHH
Q 023732 20 ALNTGASSLSFVGSGFIVLCYCLFKELRKFSF-KLVFFLALSDMLCSFFSIVG--D---P--------SKGFFCSAQGYS 85 (278)
Q Consensus 20 ~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~-~~i~~La~adll~~~~~~~~--~---~--------~~~~~C~~~~~~ 85 (278)
.+..+.+++|.+-|-+-+......|+.+--.. +++...|+-|++.++.-+.- + . .+++..+-..+-
T Consensus 9 ~~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~ 88 (310)
T PF10319_consen 9 YIPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELG 88 (310)
T ss_pred HHHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHH
Confidence 45667888999999877766665555543233 36699999999998774421 1 0 122222222221
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHH----------HHHHHhHHHHHHHHHHh----------h
Q 023732 86 ------THFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEAM----------FHLYVWGTSLVVTVVRS----------F 139 (278)
Q Consensus 86 ------~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~~----------~~~~~W~~~~l~~~~~~----------~ 139 (278)
-.-+..+|.--+.+==++||+++.+++.-.+..+.. .+...|....-...-+- +
T Consensus 89 ~~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~~ad~EiR~YIre~F 168 (310)
T PF10319_consen 89 QHLLSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCMYADDEIRDYIRESF 168 (310)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 111223333344444569999996554322333221 12233433222211110 0
Q ss_pred cCCCCCCcc-----eeeEeeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccccCchhhhHhHHHHHHH
Q 023732 140 GNDHRHLGV-----WCWTQTGRTGKAVHFITFYAPLWGAILYNGFTYFQVIRMLNNAT-RVAVGMSDRAYQFDMKALNRW 213 (278)
Q Consensus 140 ~~~y~~~~~-----~C~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~ 213 (278)
...||.+.. .+-+.+...+...+-+.-.+-..++-......|+...+++.++. +.+..+|++.++.|++..|.+
T Consensus 169 ~e~YG~Ds~diNml~alY~eaS~~~v~rSW~gi~~~T~iS~~Si~~y~vlg~~I~~kL~~~~~~mS~~T~~lq~qL~~AL 248 (310)
T PF10319_consen 169 REVYGVDSMDINMLIALYNEASDETVFRSWIGIIILTIISSYSIILYFVLGYKIMKKLNKMSSTMSKKTKRLQRQLFKAL 248 (310)
T ss_pred HHHhCCCCCcCceEeeeeccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCHhHHHHHHHHHHHH
Confidence 112442211 12222222222222111111111122222334444444333322 334455666655555555544
Q ss_pred HH-HHHHHHHHhHHHHHHHHHHhhcCCchhHHHHHHHHhhhhhhhHHHHHH
Q 023732 214 GY-YPLILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMVNCNDHI 263 (278)
Q Consensus 214 ~~-~~~~f~~~Wlp~~i~~~~~~~~~~~~~~~l~~~~~~l~~~qg~~n~ii 263 (278)
.+ .+.=-.+|..|..+..... .-+.+...|..+.+.+--+.=.++||+.
T Consensus 249 ~vQT~IPi~vsf~Pc~~~wy~p-if~i~~~~~~n~~~~iAls~FPf~DPlA 298 (310)
T PF10319_consen 249 IVQTVIPICVSFSPCVLSWYGP-IFGIDLGRWNNYFSVIALSAFPFLDPLA 298 (310)
T ss_pred HHHHHhHHHHhhccHHHHHhHH-HHcCChhHHHHHHHHHHHHHccccCchH
Confidence 32 1222344777877775332 3234456778888888777777888864
No 31
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=97.21 E-value=0.12 Score=44.79 Aligned_cols=248 Identities=12% Similarity=0.009 Sum_probs=119.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhc-cccccchhhHH----HHHHHHHHHHHhhHhhcC--C-----------CCCCcc
Q 023732 18 LTALNTGASSLSFVGSGFIVLCYCLF-KELRKFSFKLV----FFLALSDMLCSFFSIVGD--P-----------SKGFFC 79 (278)
Q Consensus 18 l~~~~~~~~~lsl~g~~~vi~~~~~~-~~lr~~~~~~i----~~La~adll~~~~~~~~~--~-----------~~~~~C 79 (278)
.....-....+++.-+.+.+...... |+.-+.....+ +...+.|+..++...|.. | +-+...
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 34455566777777777776655432 22222222233 444555666665543311 1 124456
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ChhhHHHHHHHHHhHHHHHHHHHHhhcCC-----------CCCC
Q 023732 80 SAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKT--DVEDLEAMFHLYVWGTSLVVTVVRSFGND-----------HRHL 146 (278)
Q Consensus 80 ~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~--~~~~~~~~~~~~~W~~~~l~~~~~~~~~~-----------y~~~ 146 (278)
..|.................+=-+||..+..++. ..++.+..+....+..+.....+....-. ..|.
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~pc 165 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKYPC 165 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccC
Confidence 6666777667767777777777899999975533 22334445556666666555554433211 0011
Q ss_pred cc---ee----eEeeCCCcchHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHH
Q 023732 147 GV---WC----WTQTGRTGKAVHFITFYAPLWGA-ILY-NGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYP 217 (278)
Q Consensus 147 ~~---~C----~~~~~~~~~~~~~~~f~~P~~~~-~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 217 (278)
.. +| ..-.++ .. + . ......... ... ..+......++++++.+ ...|++.++.|+|-.+.+.+=.
T Consensus 166 ~~~~~~~~~~~fv~~~~-~~-~-~-~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~--~~~S~~T~k~Qkkfl~~l~iQ~ 239 (302)
T PF10318_consen 166 PPPEFFDNPPVFVLSTD-SW-Y-I-LIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK--KTMSKKTRKMQKKFLIALIIQV 239 (302)
T ss_pred CchhhcCCCCeEEEcCC-ch-H-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch--hhhCHHHHHHHHHHHHHHHHHH
Confidence 10 11 111111 11 1 1 111111111 111 11222333334444322 3445566666666665544322
Q ss_pred H-HHHHHhHHHHHHHHHHhhcCCchhHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 023732 218 L-ILIGSWAFGTINRIHDFIEPGHKIFWLTFLDVGTAALMVNCNDHIFVLFFFGLSFTE 275 (278)
Q Consensus 218 ~-~f~~~Wlp~~i~~~~~~~~~~~~~~~l~~~~~~l~~~qg~~n~iiy~~~~~~~~~~~ 275 (278)
. -+.+.-.|.......-..+ .....+..+..++...+|....++..+ ..+.+||
T Consensus 240 ~ip~~~l~~P~~~~~~~~~~~--~~~q~~~n~~~~~~~~HG~~sti~mi~--~~~pYR~ 294 (302)
T PF10318_consen 240 LIPFIFLFIPLIYFIISIIFG--YYNQALNNISFIIISLHGIASTIVMIL--VHKPYRK 294 (302)
T ss_pred HHHHHHHhhhHHHHHHHHhcc--ccccccchHHHHHHHhccHHHHHHHhh--ccHHHHH
Confidence 2 1222333665554322222 222345566778889999999888766 3444444
No 32
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.85 E-value=0.3 Score=43.09 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=55.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhccccccchhh-HHHHHHHHHHHHHhhHhh------------cCC----CCCCcceeh
Q 023732 20 ALNTGASSLSFVGSGFIVLCYCLFKELRKFSFK-LVFFLALSDMLCSFFSIV------------GDP----SKGFFCSAQ 82 (278)
Q Consensus 20 ~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~-~i~~La~adll~~~~~~~------------~~~----~~~~~C~~~ 82 (278)
.+..+.+.++.++....+-...++.-..+.+.. ++.+|..+++-....... .+| ..+.-|...
T Consensus 25 ~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC~~~ 104 (328)
T PF02117_consen 25 IFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSECFPY 104 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCceeee
Confidence 334445555555555444443332222333333 336666665543222110 122 277889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 023732 83 GYSTHFFCVASFLWTTTIAFTLHRTVVQHK 112 (278)
Q Consensus 83 ~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~ 112 (278)
.....++.....+--.++++||-.+...|+
T Consensus 105 ~~~~~~~~~~~~~~q~aL~idRl~at~~~~ 134 (328)
T PF02117_consen 105 YYFYYFTNSGMIFIQFALTIDRLLATFFPK 134 (328)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 988888888889999999999999986554
No 33
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=96.76 E-value=0.28 Score=41.55 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=68.6
Q ss_pred HHHHHHHHhccccccchh-hHHHHHHHHHHHHHhhHhh-cCC-----------CCCCcceehhHHHHHHHHHHHHHHHHH
Q 023732 34 GFIVLCYCLFKELRKFSF-KLVFFLALSDMLCSFFSIV-GDP-----------SKGFFCSAQGYSTHFFCVASFLWTTTI 100 (278)
Q Consensus 34 ~~vi~~~~~~~~lr~~~~-~~i~~La~adll~~~~~~~-~~~-----------~~~~~C~~~~~~~~~~~~~s~~~~~~i 100 (278)
.+....+..+++.|+... -++..|.++-++.+...+. +.| -.+..-........++-.+-.+.++.+
T Consensus 32 ~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s~~f~~~Sy~idf~h~siLfsNlvi 111 (305)
T PF04789_consen 32 AFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQSELFIFMSYLIDFCHYSILFSNLVI 111 (305)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666665443 4678899988887766542 222 144455566777888889999999999
Q ss_pred HHHHHHHHhccCCChhhH----HHHHHHHHhHHHHHHHHHHhh
Q 023732 101 AFTLHRTVVQHKTDVEDL----EAMFHLYVWGTSLVVTVVRSF 139 (278)
Q Consensus 101 a~~~y~~i~~~~~~~~~~----~~~~~~~~W~~~~l~~~~~~~ 139 (278)
|++|....-.++...+-. .......+|.+|+.+......
T Consensus 112 aIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~ 154 (305)
T PF04789_consen 112 AIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMS 154 (305)
T ss_pred HHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988775443322212 224456799999887775543
No 34
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.33 E-value=0.042 Score=46.75 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=62.5
Q ss_pred ccccchhhHHHHHHHHHHHHHhhH-hh------c-CCCCCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh-
Q 023732 45 ELRKFSFKLVFFLALSDMLCSFFS-IV------G-DPSKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDV- 115 (278)
Q Consensus 45 ~lr~~~~~~i~~La~adll~~~~~-~~------~-~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~- 115 (278)
+..++.+.++.+|++++.++-+.- ++ + ...+|..|++.-++.-.+--.|+..+...++---.++ .|+...
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItI-SP~~s~w 84 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITI-SPSNSRW 84 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEE-ecCCchh
Confidence 445678889999999999876542 21 1 1348999999999999999999999999888776666 443221
Q ss_pred hhHH----H---HHHHHHhHHHHHHHH
Q 023732 116 EDLE----A---MFHLYVWGTSLVVTV 135 (278)
Q Consensus 116 ~~~~----~---~~~~~~W~~~~l~~~ 135 (278)
.+.+ + ......|.+-.++..
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli~~ 111 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLINI 111 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhhhc
Confidence 1111 1 335667888776654
No 35
>KOG3577 consensus Smoothened and related G-protein-coupled receptors [Signal transduction mechanisms]
Probab=95.86 E-value=0.051 Score=51.36 Aligned_cols=148 Identities=20% Similarity=0.281 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhhHhhcC------------C-----
Q 023732 11 TAHDRRILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSFKLVFFLALSDMLCSFFSIVGD------------P----- 73 (278)
Q Consensus 11 ~~~~~~~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~~~i~~La~adll~~~~~~~~~------------~----- 73 (278)
++++..........-+.......+.+.+++...++.++...+.+..++.+....++..+... +
T Consensus 222 ~~~e~~~~~~~i~~~s~~c~~~tlft~ltf~~d~~rfryper~i~~l~~c~~~~s~~~~~~~~~g~~~~~c~~~~~~~~~ 301 (556)
T KOG3577|consen 222 SRDENRFARSWIGIWSALCFLSTLFTVLTFLIDRMRFRYPERPIFFLSACYLIVSVGYLSSFVLGSDEIACRATPARLLV 301 (556)
T ss_pred chhhhhhHHHHhhhhhhccchhhHhHHHhhccchhhccCCCcchhhHHHhhhhhccceeecccCCCceeccCCCCCCcee
Confidence 35556655666666677777778888888887766666788889999999999888765321 1
Q ss_pred ---CCCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hhhHHHHHHHHHhHHHHHHHHHHhhcCC-CC-CC
Q 023732 74 ---SKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTD--VEDLEAMFHLYVWGTSLVVTVVRSFGND-HR-HL 146 (278)
Q Consensus 74 ---~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~--~~~~~~~~~~~~W~~~~l~~~~~~~~~~-y~-~~ 146 (278)
..+..|.......+++..++-.|....++..+++...+... .+++....+...|..|.+-++..+.... .+ +.
T Consensus 302 ~~~~~~~~C~~vf~l~y~f~~a~~~wwv~l~l~w~l~~~~kw~~e~~e~~~~~fh~~aw~~p~~~ti~~l~~~~v~~~~~ 381 (556)
T KOG3577|consen 302 QTGLENSGCTLVFLLLYFFLMAGSVWWVILTLTWFLAAGLKWGEEAIEAKSSYFHLLAWGLPSVQTILILALNKVDGDEL 381 (556)
T ss_pred ecCCCCCCceeeehhHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccceeeehhcCCchHHHHHHHHHHHhcccce
Confidence 25678999999999999988899999999999988443222 2344457899999999998887665533 23 23
Q ss_pred cceeeEeeCCCc
Q 023732 147 GVWCWTQTGRTG 158 (278)
Q Consensus 147 ~~~C~~~~~~~~ 158 (278)
...|.....+..
T Consensus 382 ~giC~vG~~~~~ 393 (556)
T KOG3577|consen 382 SGICFVGNSNPD 393 (556)
T ss_pred eEEEecCCCCcc
Confidence 457887766533
No 36
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=95.35 E-value=0.012 Score=51.29 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=54.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhhHhhcCC-------------------CCCCcce
Q 023732 21 LNTGASSLSFVGSGFIVLCYCLF-KELRKFSFKLVFFLALSDMLCSFFSIVGDP-------------------SKGFFCS 80 (278)
Q Consensus 21 ~~~~~~~lsl~g~~~vi~~~~~~-~~lr~~~~~~i~~La~adll~~~~~~~~~~-------------------~~~~~C~ 80 (278)
+..++.++|++.|.+.+....++ |+.-..-.+++...|+.|+..++.-....| .++...+
T Consensus 4 ~~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (307)
T PF10326_consen 4 IQYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQ 83 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchhee
Confidence 45678899999999888776543 333233334667788888887766442211 0223333
Q ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 023732 81 AQGYSTHFFCVASFLWTTTIAFTLHRTVVQHK 112 (278)
Q Consensus 81 ~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~ 112 (278)
........+...++.-.+.-=++||.++++++
T Consensus 84 ~l~~~y~~~f~~~~~llaihFiYRY~av~~~~ 115 (307)
T PF10326_consen 84 ILLAIYCGCFGMSFSLLAIHFIYRYWAVCRPK 115 (307)
T ss_pred ehhhhhhhhHHHHHHHHHhHhhhheeeeccch
Confidence 33333334444444445555569999997664
No 37
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=94.07 E-value=3 Score=34.67 Aligned_cols=42 Identities=5% Similarity=0.013 Sum_probs=34.7
Q ss_pred CCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh
Q 023732 75 KGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVE 116 (278)
Q Consensus 75 ~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~ 116 (278)
++..|+..-....+++..+.+.-..+++||+.|....+.+++
T Consensus 81 ~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 81 DPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 677788888889999999999999999999999965443433
No 38
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.22 E-value=8.3 Score=34.56 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=28.1
Q ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhh
Q 023732 79 CSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVED 117 (278)
Q Consensus 79 C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~ 117 (278)
--+.+++....+.+..+.+.++++||..|...-+.++++
T Consensus 123 l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 123 LFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344466777777777899999999999998654433333
No 39
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=90.39 E-value=1.9 Score=34.97 Aligned_cols=92 Identities=21% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcccc-ccc--------hhhHHHHHHHHHHHHHhhHhh--c-CCC-CCCcceehhHHHHH
Q 023732 22 NTGASSLSFVGSGFIVLCYCLFKEL-RKF--------SFKLVFFLALSDMLCSFFSIV--G-DPS-KGFFCSAQGYSTHF 88 (278)
Q Consensus 22 ~~~~~~lsl~g~~~vi~~~~~~~~l-r~~--------~~~~i~~La~adll~~~~~~~--~-~~~-~~~~C~~~~~~~~~ 88 (278)
...+...|.+.+.+....+.++|++ |+. .+.+++++=..-+-.-..... + .|. .-..|.+..-+...
T Consensus 47 e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIvFaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~f~S~ 126 (226)
T PF06681_consen 47 EFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIVFATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKNFTSS 126 (226)
T ss_pred HHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEEEeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHhHHHH
Confidence 3445666667666666655555542 221 234555544332222222222 1 222 55789877766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Q 023732 89 FCVASFLWTTTIAFTLHRTVVQHKT 113 (278)
Q Consensus 89 ~~~~s~~~~~~ia~~~y~~i~~~~~ 113 (278)
...++..-.+++|++||+.++.+++
T Consensus 127 t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 127 TTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred Hhhhhccchhhhhhhhhheeeeccc
Confidence 6666777777899999999987654
No 40
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=85.59 E-value=24 Score=30.87 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=37.3
Q ss_pred CCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHH---HHHHHHhHHHHHHHHHH
Q 023732 76 GFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTDVEDLEA---MFHLYVWGTSLVVTVVR 137 (278)
Q Consensus 76 ~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~~~~~~~---~~~~~~W~~~~l~~~~~ 137 (278)
+..=+..-++..++..++.+.....++-|-..+..|+...+..++ ...-++...|++.+.+-
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~ 164 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPM 164 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 334445556677777888888999999998888555432222222 23344555555555543
No 41
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=85.47 E-value=23 Score=30.46 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccccchh-hHHHHHHHHHHHHHhhHhhc---------CCC---CCCcceehh
Q 023732 17 ILTALNTGASSLSFVGSGFIVLCYCLFKELRKFSF-KLVFFLALSDMLCSFFSIVG---------DPS---KGFFCSAQG 83 (278)
Q Consensus 17 ~l~~~~~~~~~lsl~g~~~vi~~~~~~~~lr~~~~-~~i~~La~adll~~~~~~~~---------~~~---~~~~C~~~~ 83 (278)
....+....+..+...|...+..+...|+ |+..+ .++......|.+.++...+. .++ .+..=-..+
T Consensus 7 iv~~i~i~~s~~~~~iN~~lL~~if~~Kk-~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 7 IVSIIGIIFSIITCLINFYLLYSIFYSKK-KKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 34566677888888899999999988888 55444 45566688899988775321 111 111112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 023732 84 YSTHFFCVASFLWTTTIAFTLHRTVVQHK 112 (278)
Q Consensus 84 ~~~~~~~~~s~~~~~~ia~~~y~~i~~~~ 112 (278)
.-..........-...||+||-.|+..|.
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI 114 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPI 114 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33334445566667789999999996653
No 42
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=69.01 E-value=59 Score=26.16 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhh
Q 023732 243 FWLTFLDVGTAAL 255 (278)
Q Consensus 243 ~~l~~~~~~l~~~ 255 (278)
..+.++...+||.
T Consensus 243 ~~l~~~~s~~nP~ 255 (257)
T PF00001_consen 243 YFLAFLNSCLNPI 255 (257)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcE
Confidence 4455556666553
No 43
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=53.92 E-value=88 Score=25.71 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=30.5
Q ss_pred CCCCCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023732 72 DPSKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTV 108 (278)
Q Consensus 72 ~~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i 108 (278)
.+.++..|..+......+....+..+.+=++..|...
T Consensus 49 ~~~s~~~C~~r~~~~~l~f~l~~~~ll~K~~ri~~if 85 (238)
T PF00003_consen 49 LPPSDILCTLRRWLFSLGFTLIFSALLAKTWRIYRIF 85 (238)
T ss_pred cCcCCcEEEEeeeeeeeehHhhhhHHHHhhhheeeee
Confidence 3557889999999999998888888888887777655
No 44
>PF15050 SCIMP: SCIMP protein
Probab=36.19 E-value=1.3e+02 Score=22.27 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 023732 175 LYNGFTYFQVIRMLNNATR 193 (278)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~ 193 (278)
....++|+..++++|+-++
T Consensus 22 ~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 22 VLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3345667767777776443
No 45
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=34.98 E-value=1e+02 Score=20.58 Aligned_cols=25 Identities=8% Similarity=0.285 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023732 163 FITFYAPLWGAILYNGFTYFQVIRMLNN 190 (278)
Q Consensus 163 ~~~f~~P~~~~~~~~~~~~~~i~~~~~~ 190 (278)
++....|++++. .++-++..+.+.+
T Consensus 26 vll~LtPlfiis---a~lSwkLaK~ie~ 50 (74)
T PF15086_consen 26 VLLILTPLFIIS---AVLSWKLAKAIEK 50 (74)
T ss_pred HHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence 445556666543 3555566666654
No 46
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=30.65 E-value=57 Score=25.36 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=42.0
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC----hhhHHHHHHHHHhHHHHHHHHHHhh
Q 023732 80 SAQGYSTHFFCVASFLWTTTIAFTLHRTVVQHKTD----VEDLEAMFHLYVWGTSLVVTVVRSF 139 (278)
Q Consensus 80 ~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~~~~----~~~~~~~~~~~~W~~~~l~~~~~~~ 139 (278)
+-...+.++++...++-...|++||-..+.+|..+ .+++-+.|+.......+..-++|..
T Consensus 45 ~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 45 KEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred CEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 33466788999999999999999999888777443 1344456666555666665666654
No 47
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=30.06 E-value=3.7e+02 Score=23.31 Aligned_cols=64 Identities=11% Similarity=-0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCchhhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023732 171 WGAILYNGFTYFQVIRMLNNATRVAVGMSDRAYQFDMKALNRWGYYPLILIGSWAFGTINRIHD 234 (278)
Q Consensus 171 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~~~Wlp~~i~~~~~ 234 (278)
.++..+..+....+...++|+.|+-+...+..+..+.|+..+..-....|++....+++..+..
T Consensus 190 ~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~ 253 (303)
T PF05296_consen 190 FLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILS 253 (303)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777888888877765555444555667777787778888999999999987764
No 48
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.50 E-value=1.3e+02 Score=20.34 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=4.6
Q ss_pred hhhhhccccCc
Q 023732 190 NATRVAVGMSD 200 (278)
Q Consensus 190 ~~~~~~~~~~~ 200 (278)
++.+.+.|.++
T Consensus 28 sk~~~~~~Ls~ 38 (75)
T PRK09458 28 SKRQGSQGLSQ 38 (75)
T ss_pred ccccCCCCCCH
Confidence 33343444444
No 49
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.21 E-value=1.8e+02 Score=17.37 Aligned_cols=7 Identities=0% Similarity=0.301 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023732 183 QVIRMLN 189 (278)
Q Consensus 183 ~i~~~~~ 189 (278)
.++.+++
T Consensus 24 ~IyQkik 30 (49)
T PF11044_consen 24 SIYQKIK 30 (49)
T ss_pred HHHHHHH
Confidence 3333333
No 50
>PF14802 TMEM192: TMEM192 family
Probab=23.04 E-value=4.6e+02 Score=22.02 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=26.0
Q ss_pred CCCCCcceehhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023732 73 PSKGFFCSAQGYSTHFFCVASFLWTTTIAFTLHRTVVQH 111 (278)
Q Consensus 73 ~~~~~~C~~~~~~~~~~~~~s~~~~~~ia~~~y~~i~~~ 111 (278)
++++.-| .......+.=..+|+....+|+|..-.++
T Consensus 49 ~~~~~~C---~~y~iily~~v~lW~lt~l~d~y~k~~H~ 84 (236)
T PF14802_consen 49 PPDEDKC---DVYFIILYLHVALWLLTYLFDRYIKHQHQ 84 (236)
T ss_pred CcccCcc---chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466688 33444566778999999999999887543
No 51
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=20.90 E-value=3.6e+02 Score=20.06 Aligned_cols=16 Identities=13% Similarity=0.301 Sum_probs=8.8
Q ss_pred HHHHhHHHHHHHHHHh
Q 023732 123 HLYVWGTSLVVTVVRS 138 (278)
Q Consensus 123 ~~~~W~~~~l~~~~~~ 138 (278)
....|...++..++++
T Consensus 37 ~i~l~~~~l~~~li~l 52 (129)
T PF11683_consen 37 FIILFYYSLLLNLISL 52 (129)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555554
No 52
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=20.70 E-value=1.6e+02 Score=24.87 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhccccccchhhH
Q 023732 28 LSFVGSGFIVLCYCLFKELRKFSFKL 53 (278)
Q Consensus 28 lsl~g~~~vi~~~~~~~~lr~~~~~~ 53 (278)
+|++|...-........+.++..|.+
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF 28 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSF 28 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCH
Confidence 35555555555555555555555543
Done!