Query 023733
Match_columns 278
No_of_seqs 217 out of 1562
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 11:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 85.4 0.3 1E-05 30.5 1.2 27 96-122 13-39 (51)
2 2ayj_A 50S ribosomal protein L 84.8 0.3 1E-05 30.9 1.0 27 96-122 18-44 (56)
3 1x4u_A Zinc finger, FYVE domai 71.1 1.4 4.8E-05 30.4 1.1 24 97-120 14-39 (84)
4 2knc_B Integrin beta-3; transm 71.1 15 0.00052 24.9 6.4 43 180-222 10-52 (79)
5 3t7l_A Zinc finger FYVE domain 71.0 2.3 7.9E-05 29.7 2.3 26 96-121 19-46 (90)
6 1z2q_A LM5-1; membrane protein 70.4 1.5 5.2E-05 30.2 1.2 26 96-121 20-47 (84)
7 1joc_A EEA1, early endosomal a 70.0 1.6 5.6E-05 32.6 1.4 24 97-120 69-94 (125)
8 2yw8_A RUN and FYVE domain-con 67.7 1.6 5.5E-05 29.9 0.9 26 96-121 18-45 (82)
9 1dvp_A HRS, hepatocyte growth 63.9 2.3 7.8E-05 34.9 1.2 25 97-121 161-187 (220)
10 1vfy_A Phosphatidylinositol-3- 61.8 1.7 5.8E-05 29.1 0.1 24 98-121 12-37 (73)
11 1wfk_A Zinc finger, FYVE domai 60.9 2.4 8.3E-05 29.5 0.7 25 96-120 8-34 (88)
12 1y02_A CARP2, FYVE-ring finger 60.6 1.9 6.5E-05 32.0 0.1 24 97-120 19-44 (120)
13 2cr8_A MDM4 protein; ZF-ranbp 57.5 3.5 0.00012 25.4 0.9 22 97-118 11-32 (53)
14 2c6a_A Ubiquitin-protein ligas 55.7 4.4 0.00015 24.4 1.1 24 96-119 12-35 (46)
15 3zyq_A Hepatocyte growth facto 55.6 3.1 0.00011 34.3 0.7 25 97-121 164-190 (226)
16 1wff_A Riken cDNA 2810002D23 p 50.8 21 0.00072 24.5 4.1 40 96-136 24-69 (85)
17 3u5e_m 60S ribosomal protein L 48.9 5.6 0.00019 29.5 1.1 25 96-120 92-118 (128)
18 1wfl_A Zinc finger protein 216 44.3 30 0.001 23.1 3.9 39 96-135 24-67 (74)
19 2dkt_A Ring finger and CHY zin 42.0 5.5 0.00019 30.3 0.1 41 96-136 82-126 (143)
20 2dkt_A Ring finger and CHY zin 37.1 5.4 0.00019 30.4 -0.7 31 99-129 103-136 (143)
21 3mpx_A FYVE, rhogef and PH dom 36.3 7.5 0.00026 34.9 0.0 25 96-120 374-400 (434)
22 1twf_L ABC10-alpha, DNA-direct 33.4 19 0.00066 23.7 1.7 27 96-122 27-56 (70)
23 2jrp_A Putative cytoplasmic pr 29.2 9.6 0.00033 26.0 -0.4 21 98-119 19-39 (81)
24 2xzm_5 Ribosomal protein S26E 27.8 13 0.00045 27.1 0.1 21 111-131 20-40 (119)
25 3u5c_a 40S ribosomal protein S 26.2 14 0.00047 27.1 -0.1 20 111-130 20-39 (119)
26 1h7d_A Aminolevulinic acid syn 26.0 23 0.00077 21.7 0.9 14 122-135 5-18 (49)
27 1wil_A KIAA1045 protein; ring 25.3 34 0.0012 23.5 1.8 25 97-121 15-39 (89)
28 2apo_B Ribosome biogenesis pro 24.7 23 0.00078 22.7 0.8 22 96-119 5-26 (60)
29 2pg3_A Queuosine biosynthesis 24.2 17 0.0006 29.4 0.2 18 106-123 190-207 (232)
30 2vrw_B P95VAV, VAV1, proto-onc 23.8 25 0.00084 31.2 1.1 27 96-122 356-385 (406)
31 3bl5_A Queuosine biosynthesis 21.7 23 0.00077 28.2 0.4 17 107-123 188-204 (219)
32 2kvh_A Zinc finger and BTB dom 21.4 22 0.00077 17.0 0.2 11 110-120 2-12 (27)
33 1tac_A TAT protein; transcript 21.3 31 0.0011 23.5 1.0 14 97-117 24-37 (86)
34 3jyw_9 60S ribosomal protein L 20.9 39 0.0013 22.4 1.4 27 96-122 25-55 (72)
35 3j20_Y 30S ribosomal protein S 20.7 13 0.00044 22.8 -1.0 23 96-118 18-44 (50)
36 1ard_A Yeast transcription fac 20.4 31 0.0011 16.5 0.7 10 111-120 2-11 (29)
37 1lpv_A Doublesex protein; tran 20.2 50 0.0017 20.4 1.6 25 108-132 4-33 (52)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.39 E-value=0.3 Score=30.52 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=23.8
Q ss_pred cccccccccccCCCCCCCCcccccccc
Q 023733 96 ERRQCDKCSAYKPPRAHHCKVCRRCVL 122 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 122 (278)
....|..|...-|+++..|+.||.--+
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCCCCceecCCCCCccc
Confidence 568999999999999999999987544
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=84.82 E-value=0.3 Score=30.90 Aligned_cols=27 Identities=37% Similarity=0.844 Sum_probs=23.6
Q ss_pred cccccccccccCCCCCCCCcccccccc
Q 023733 96 ERRQCDKCSAYKPPRAHHCKVCRRCVL 122 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 122 (278)
....|.+|...-|+||..|+.||..-+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred chhhhccccCcCCcccccccCCCCCCC
Confidence 568999999999999999999986544
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.06 E-value=1.4 Score=30.39 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=17.6
Q ss_pred ccccccccc--cCCCCCCCCcccccc
Q 023733 97 RRQCDKCSA--YKPPRAHHCKVCRRC 120 (278)
Q Consensus 97 ~~~C~~C~~--~kP~Rs~HC~~C~~C 120 (278)
...|..|+. ---.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 457888874 234689999999864
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=71.05 E-value=15 Score=24.87 Aligned_cols=43 Identities=26% Similarity=0.361 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhHH
Q 023733 180 TFYVFCGTVMLALCLILGTLLGWHIYLIIHNMTTIEYHEGIRA 222 (278)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~~~~~li~~n~Tt~E~~~~~~~ 222 (278)
+..++.+++..++++.+..+++|-+..-.+++--.+++++.+.
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666777777776667766666665444
No 5
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.02 E-value=2.3 Score=29.69 Aligned_cols=26 Identities=31% Similarity=0.793 Sum_probs=18.0
Q ss_pred cccccccccc--cCCCCCCCCccccccc
Q 023733 96 ERRQCDKCSA--YKPPRAHHCKVCRRCV 121 (278)
Q Consensus 96 ~~~~C~~C~~--~kP~Rs~HC~~C~~CV 121 (278)
....|..|+. ---.|-|||+.||+-+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE
Confidence 3467888874 2235889999998643
No 6
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=70.41 E-value=1.5 Score=30.21 Aligned_cols=26 Identities=27% Similarity=0.793 Sum_probs=18.4
Q ss_pred ccccccccccc--CCCCCCCCccccccc
Q 023733 96 ERRQCDKCSAY--KPPRAHHCKVCRRCV 121 (278)
Q Consensus 96 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 121 (278)
+...|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 44678888742 345889999998643
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.95 E-value=1.6 Score=32.55 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=17.8
Q ss_pred cccccccccc--CCCCCCCCcccccc
Q 023733 97 RRQCDKCSAY--KPPRAHHCKVCRRC 120 (278)
Q Consensus 97 ~~~C~~C~~~--kP~Rs~HC~~C~~C 120 (278)
...|..|+.. --.|-|||+.||+-
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~v 94 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNI 94 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCE
T ss_pred CCCCcCcCCccccccccccCCCCCeE
Confidence 4678888742 34689999999864
No 8
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.72 E-value=1.6 Score=29.91 Aligned_cols=26 Identities=31% Similarity=0.793 Sum_probs=18.4
Q ss_pred cccccccccc--cCCCCCCCCccccccc
Q 023733 96 ERRQCDKCSA--YKPPRAHHCKVCRRCV 121 (278)
Q Consensus 96 ~~~~C~~C~~--~kP~Rs~HC~~C~~CV 121 (278)
+...|..|+. ---.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 4467888874 2345889999998743
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.93 E-value=2.3 Score=34.89 Aligned_cols=25 Identities=32% Similarity=0.824 Sum_probs=18.2
Q ss_pred cccccccccc--CCCCCCCCccccccc
Q 023733 97 RRQCDKCSAY--KPPRAHHCKVCRRCV 121 (278)
Q Consensus 97 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 121 (278)
...|..|+.. --.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 4688888732 345899999998744
No 10
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.85 E-value=1.7 Score=29.07 Aligned_cols=24 Identities=33% Similarity=0.707 Sum_probs=17.0
Q ss_pred ccccccccc--CCCCCCCCccccccc
Q 023733 98 RQCDKCSAY--KPPRAHHCKVCRRCV 121 (278)
Q Consensus 98 ~~C~~C~~~--kP~Rs~HC~~C~~CV 121 (278)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 458888742 345899999998743
No 11
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=60.89 E-value=2.4 Score=29.48 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=18.1
Q ss_pred cccccccccc--cCCCCCCCCcccccc
Q 023733 96 ERRQCDKCSA--YKPPRAHHCKVCRRC 120 (278)
Q Consensus 96 ~~~~C~~C~~--~kP~Rs~HC~~C~~C 120 (278)
....|..|+. ---.|-|||+.||+-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCE
Confidence 3467888874 234688999999864
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.60 E-value=1.9 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=17.2
Q ss_pred ccccccccc--cCCCCCCCCcccccc
Q 023733 97 RRQCDKCSA--YKPPRAHHCKVCRRC 120 (278)
Q Consensus 97 ~~~C~~C~~--~kP~Rs~HC~~C~~C 120 (278)
...|..|+. .-..|-|||+.||+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred cCcccCcCCccccccccccCCCCCCe
Confidence 357888874 234689999999874
No 13
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=57.49 E-value=3.5 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.806 Sum_probs=16.7
Q ss_pred ccccccccccCCCCCCCCcccc
Q 023733 97 RRQCDKCSAYKPPRAHHCKVCR 118 (278)
Q Consensus 97 ~~~C~~C~~~kP~Rs~HC~~C~ 118 (278)
.-.|.+|+..-||-..||..|-
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCw 32 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCW 32 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTC
T ss_pred eeecccccccCCCccchhHHHH
Confidence 3568888888888888887764
No 14
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=55.74 E-value=4.4 Score=24.43 Aligned_cols=24 Identities=29% Similarity=0.890 Sum_probs=18.7
Q ss_pred cccccccccccCCCCCCCCccccc
Q 023733 96 ERRQCDKCSAYKPPRAHHCKVCRR 119 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs~HC~~C~~ 119 (278)
..-.|.+|+..-||-..||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 345699999988988888887743
No 15
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=55.59 E-value=3.1 Score=34.27 Aligned_cols=25 Identities=28% Similarity=0.935 Sum_probs=17.5
Q ss_pred ccccccccc-c-CCCCCCCCccccccc
Q 023733 97 RRQCDKCSA-Y-KPPRAHHCKVCRRCV 121 (278)
Q Consensus 97 ~~~C~~C~~-~-kP~Rs~HC~~C~~CV 121 (278)
...|..|+. + --.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 357888873 2 234789999998753
No 16
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.75 E-value=21 Score=24.53 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=26.0
Q ss_pred cccccccccccCCC-CCCCCccccc--ccc---CCcccccccccccc
Q 023733 96 ERRQCDKCSAYKPP-RAHHCKVCRR--CVL---RMDHHCLWINNCVG 136 (278)
Q Consensus 96 ~~~~C~~C~~~kP~-Rs~HC~~C~~--CV~---~~DHHCpw~~nCIG 136 (278)
....|..|+..-.. -..+|+ ||. |-. --||.|++--.=.|
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhhHHH
Confidence 45789999875555 467886 763 443 35999987544333
No 17
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=48.86 E-value=5.6 Score=29.47 Aligned_cols=25 Identities=40% Similarity=0.966 Sum_probs=22.2
Q ss_pred cccccccccccCCCCCCCCc--ccccc
Q 023733 96 ERRQCDKCSAYKPPRAHHCK--VCRRC 120 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs~HC~--~C~~C 120 (278)
....|.+|...-|+|+..|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 67999999999999999999 58764
No 18
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.31 E-value=30 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.516 Sum_probs=23.5
Q ss_pred cccccccccccCCCCCCCCccccc--cc---cCCccccccccccc
Q 023733 96 ERRQCDKCSAYKPPRAHHCKVCRR--CV---LRMDHHCLWINNCV 135 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV---~~~DHHCpw~~nCI 135 (278)
..+.|..|+..-..=...|+ ||. |- .--||.|++--.=.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAE 67 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGT
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhh
Confidence 34679999864332247777 763 32 23389998754433
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=41.97 E-value=5.5 Score=30.35 Aligned_cols=41 Identities=32% Similarity=0.747 Sum_probs=28.6
Q ss_pred cccccccccccCCC-CCCCCccccccccCC--c-ccccccccccc
Q 023733 96 ERRQCDKCSAYKPP-RAHHCKVCRRCVLRM--D-HHCLWINNCVG 136 (278)
Q Consensus 96 ~~~~C~~C~~~kP~-Rs~HC~~C~~CV~~~--D-HHCpw~~nCIG 136 (278)
...||.+|+.+.++ ..+||..||.|...- | -||.-=|.|+.
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 45789999987544 457888888888762 2 27777777754
No 20
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.10 E-value=5.4 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.690 Sum_probs=21.0
Q ss_pred ccccccccCCCCCCCCcccccccc--CCc-cccc
Q 023733 99 QCDKCSAYKPPRAHHCKVCRRCVL--RMD-HHCL 129 (278)
Q Consensus 99 ~C~~C~~~kP~Rs~HC~~C~~CV~--~~D-HHCp 129 (278)
.|..|++=+..--.||..||.|+. ..| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 344455555677889999999965 344 7764
No 21
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.30 E-value=7.5 Score=34.92 Aligned_cols=25 Identities=28% Similarity=0.688 Sum_probs=0.0
Q ss_pred cccccccccc--cCCCCCCCCcccccc
Q 023733 96 ERRQCDKCSA--YKPPRAHHCKVCRRC 120 (278)
Q Consensus 96 ~~~~C~~C~~--~kP~Rs~HC~~C~~C 120 (278)
....|..|+. ---.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 3467888874 223478999999874
No 22
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.39 E-value=19 Score=23.75 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=20.0
Q ss_pred cccccccccc---cCCCCCCCCcccccccc
Q 023733 96 ERRQCDKCSA---YKPPRAHHCKVCRRCVL 122 (278)
Q Consensus 96 ~~~~C~~C~~---~kP~Rs~HC~~C~~CV~ 122 (278)
....|..|.. .++.-+-||+.||.-|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 4567999975 45566789999998655
No 23
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.18 E-value=9.6 Score=26.02 Aligned_cols=21 Identities=29% Similarity=0.743 Sum_probs=11.4
Q ss_pred cccccccccCCCCCCCCccccc
Q 023733 98 RQCDKCSAYKPPRAHHCKVCRR 119 (278)
Q Consensus 98 ~~C~~C~~~kP~Rs~HC~~C~~ 119 (278)
..|..|+.--++.+ .|..||.
T Consensus 19 ~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 19 AHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EECTTTCCEEEEEE-ECSSSCS
T ss_pred eECccccccCCCcc-cCcchhh
Confidence 44666655555555 5555553
No 24
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=27.81 E-value=13 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.0
Q ss_pred CCCCccccccccCCccccccc
Q 023733 111 AHHCKVCRRCVLRMDHHCLWI 131 (278)
Q Consensus 111 s~HC~~C~~CV~~~DHHCpw~ 131 (278)
.-||..|++||.+----+.++
T Consensus 20 ~V~C~nCgr~vPKDKAIKrf~ 40 (119)
T 2xzm_5 20 TVPCTNCGRQVAKDKAVKRYT 40 (119)
T ss_dssp EEECTTTCCEEETTTSEECCE
T ss_pred cEeeCCccccCcccceeEEEE
Confidence 447999999999876666444
No 25
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=26.20 E-value=14 Score=27.08 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCCCccccccccCCcccccc
Q 023733 111 AHHCKVCRRCVLRMDHHCLW 130 (278)
Q Consensus 111 s~HC~~C~~CV~~~DHHCpw 130 (278)
.-||..|++||.+----+.+
T Consensus 20 ~V~C~nCgr~vPKDKAIKrf 39 (119)
T 3u5c_a 20 PVRCVNCSKSIPKDKAIKRM 39 (119)
T ss_dssp EEECTTTCCEEEGGGSCEEE
T ss_pred cEeeccccccccccceeeEE
Confidence 34799999999986655543
No 26
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=26.02 E-value=23 Score=21.66 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=11.1
Q ss_pred cCCccccccccccc
Q 023733 122 LRMDHHCLWINNCV 135 (278)
Q Consensus 122 ~~~DHHCpw~~nCI 135 (278)
..++|+||+++.+=
T Consensus 5 a~~l~~CPFL~R~p 18 (49)
T 1h7d_A 5 AMLLRSCPVLSQGP 18 (49)
T ss_dssp SCSCCSCCCCSSCS
T ss_pred hhhhccCCchhcCC
Confidence 35789999998765
No 27
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.32 E-value=34 Score=23.49 Aligned_cols=25 Identities=28% Similarity=0.806 Sum_probs=21.4
Q ss_pred ccccccccccCCCCCCCCccccccc
Q 023733 97 RRQCDKCSAYKPPRAHHCKVCRRCV 121 (278)
Q Consensus 97 ~~~C~~C~~~kP~Rs~HC~~C~~CV 121 (278)
...|..|+.+--.--.-|++|+|+-
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CcccCccccccccceeccccccccc
Confidence 4789999999888888999999863
No 28
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=24.72 E-value=23 Score=22.65 Aligned_cols=22 Identities=27% Similarity=0.774 Sum_probs=15.8
Q ss_pred cccccccccccCCCCCCCCccccc
Q 023733 96 ERRQCDKCSAYKPPRAHHCKVCRR 119 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs~HC~~C~~ 119 (278)
..+.|..|..+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4578888877666 667777774
No 29
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=24.24 E-value=17 Score=29.40 Aligned_cols=18 Identities=33% Similarity=0.815 Sum_probs=14.4
Q ss_pred cCCCCCCCCccccccccC
Q 023733 106 YKPPRAHHCKVCRRCVLR 123 (278)
Q Consensus 106 ~kP~Rs~HC~~C~~CV~~ 123 (278)
+++.|.+||..|+.|+.|
T Consensus 190 ~~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 190 YNGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TTSCCTTTTSCSHHHHHH
T ss_pred cCCCCCCcCCcCHhHHHH
Confidence 356666899999999876
No 30
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.83 E-value=25 Score=31.22 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=19.6
Q ss_pred cccccccccccC---CCCCCCCcccccccc
Q 023733 96 ERRQCDKCSAYK---PPRAHHCKVCRRCVL 122 (278)
Q Consensus 96 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~ 122 (278)
...+|..|+..- -.|-|||+.||..|-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 568999998532 468899998875443
No 31
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=21.68 E-value=23 Score=28.16 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=13.7
Q ss_pred CCCCCCCCccccccccC
Q 023733 107 KPPRAHHCKVCRRCVLR 123 (278)
Q Consensus 107 kP~Rs~HC~~C~~CV~~ 123 (278)
.+.|..||..|..|+.|
T Consensus 188 ~~~~~~~CG~C~~C~~r 204 (219)
T 3bl5_A 188 NGIIADGCGECPACHLR 204 (219)
T ss_dssp TSCCSSCCSCSHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH
Confidence 45566999999999875
No 32
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.38 E-value=22 Score=17.00 Aligned_cols=11 Identities=18% Similarity=0.788 Sum_probs=6.8
Q ss_pred CCCCCcccccc
Q 023733 110 RAHHCKVCRRC 120 (278)
Q Consensus 110 Rs~HC~~C~~C 120 (278)
|.+-|..||+-
T Consensus 2 k~~~C~~C~k~ 12 (27)
T 2kvh_A 2 KPFSCSLCPQR 12 (27)
T ss_dssp CCEECSSSSCE
T ss_pred cCccCCCcChh
Confidence 44567777664
No 33
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=21.30 E-value=31 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=9.1
Q ss_pred ccccccccccCCCCCCCCccc
Q 023733 97 RRQCDKCSAYKPPRAHHCKVC 117 (278)
Q Consensus 97 ~~~C~~C~~~kP~Rs~HC~~C 117 (278)
.-||.+| ++||-.|
T Consensus 24 ~CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 24 RAHAKKS-------AYHSQVA 37 (86)
T ss_dssp CSSTTTT-------TTTCCCS
T ss_pred Cceecch-------hhhhhHH
Confidence 3566666 6777776
No 34
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.95 E-value=39 Score=22.41 Aligned_cols=27 Identities=26% Similarity=0.666 Sum_probs=20.4
Q ss_pred cccccccccccCCCCC----CCCcccccccc
Q 023733 96 ERRQCDKCSAYKPPRA----HHCKVCRRCVL 122 (278)
Q Consensus 96 ~~~~C~~C~~~kP~Rs----~HC~~C~~CV~ 122 (278)
....|+.|...+-.|. .||+.|++=+.
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 5678999987776664 59999987554
No 35
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.68 E-value=13 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=13.5
Q ss_pred cccccccccccCC----CCCCCCcccc
Q 023733 96 ERRQCDKCSAYKP----PRAHHCKVCR 118 (278)
Q Consensus 96 ~~~~C~~C~~~kP----~Rs~HC~~C~ 118 (278)
..++|+.|..-.- ...++|..||
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 5689999975111 1234666665
No 36
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.43 E-value=31 Score=16.53 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=6.1
Q ss_pred CCCCcccccc
Q 023733 111 AHHCKVCRRC 120 (278)
Q Consensus 111 s~HC~~C~~C 120 (278)
.+.|..|++-
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 1ard_A 2 SFVCEVCTRA 11 (29)
T ss_dssp CCBCTTTCCB
T ss_pred CeECCCCCcc
Confidence 4566666654
No 37
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=20.18 E-value=50 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=14.2
Q ss_pred CCCCCCCccc---cccccCCcc--cccccc
Q 023733 108 PPRAHHCKVC---RRCVLRMDH--HCLWIN 132 (278)
Q Consensus 108 P~Rs~HC~~C---~~CV~~~DH--HCpw~~ 132 (278)
|.|..+|..| |.-+..-+| +|+|-+
T Consensus 4 ~r~~p~CaRCrNHG~~~~lKGHKr~C~~r~ 33 (52)
T 1lpv_A 4 PRTPPNCARCRNHGLKITLKGHKRYCKFRY 33 (52)
T ss_dssp CCCCSSCHHHHTTTCCCTTTTCGGGCTTTT
T ss_pred CCCCCCCcccccCCCccccCCccCccCCCC
Confidence 4444566666 344555555 488864
Done!