BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023734
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZPS|A Chain A, Crystal Structure Of Methanobacterium Thermoautotrophicum
Phosphoribosyl-Amp Cyclohydrolase Hisi
pdb|1ZPS|B Chain B, Crystal Structure Of Methanobacterium Thermoautotrophicum
Phosphoribosyl-Amp Cyclohydrolase Hisi
Length = 138
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 61/92 (66%)
Query: 64 LAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDI 123
L +A+AQ+ +TG +LM + NR+AL T+ + A ++S SR LW KGE+S + V+D+
Sbjct: 23 LIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDV 82
Query: 124 FLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
+DCD D+++ + +G CHTG +C+Y S+
Sbjct: 83 LVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 114
>pdb|2A7W|A Chain A, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|B Chain B, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|C Chain C, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|D Chain D, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|E Chain E, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|F Chain F, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|G Chain G, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|H Chain H, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|I Chain I, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|J Chain J, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|K Chain K, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
pdb|2A7W|L Chain L, Crystal Structure Of Phosphoribosyl-Atp Pyrophosphatase
From Chromobacterium Violaceum (Atcc 12472). Nesg Target
Cvr7
Length = 116
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 223 ENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGIEEKRSR 274
+++D E+AD+ +H VLL ++ E+V+ L +R SG++EK SR
Sbjct: 53 KDKDKLHLVREVADLWFHTXVLLTYHGLRPEDVVXELHRREGISGLDEKASR 104
>pdb|2D3I|A Chain A, Crystal Structure Of Aluminum-Bound Ovotransferrin At 2.15
Angstrom Resolution
Length = 686
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 177 LESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMA 235
++ + + KN K W K L +D +LLC+ R ++ E N +A
Sbjct: 540 IQHSTVEENTGGKN-KADWAKNLQMDDFELLCTDGRRA-----NVMDYRECN------LA 587
Query: 236 DVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGIEEKRSRVSEN 278
+V HA+V+ K K ++LE KRF +G E+ + + E+
Sbjct: 588 EVPTHAVVVRPEKANKIRDLLERQEKRFGVNGSEKSKFMMFES 630
>pdb|1N04|A Chain A, Diferric Chicken Serum Transferrin At 2.8 A Resolution.
pdb|1RYX|A Chain A, Crystal Structure Of Hen Serum Transferrin In Apo- Form
pdb|1AIV|A Chain A, Apo Ovotransferrin
pdb|1OVT|A Chain A, Refined Crystallographic Structure Of Hen Ovotransferrin
At 2.4 Angstroms Resolution
Length = 686
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 177 LESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMA 235
++ + + KN K W K L +D +LLC+ R ++ E N +A
Sbjct: 540 IQHSTVEENTGGKN-KADWAKNLQMDDFELLCTDGRRA-----NVMDYRECN------LA 587
Query: 236 DVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGIEEKRSRVSEN 278
+V HA+V+ K K ++LE KRF +G E+ + + E+
Sbjct: 588 EVPTHAVVVRPEKANKIRDLLERQEKRFGVNGSEKSKFMMFES 630
>pdb|1IQ7|A Chain A, Ovotransferrin, C-Terminal Lobe, Apo Form
Length = 345
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 177 LESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMA 235
++ + + KN K W K L +D +LLC+ R ++ E N +A
Sbjct: 199 IQHSTVEENTGGKN-KADWAKNLQMDDFELLCTDGRRA-----NVMDYRECN------LA 246
Query: 236 DVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGIEEKRSRVSE 277
+V HA+V+ K K ++LE KRF +G E+ + + E
Sbjct: 247 EVPTHAVVVRPEKANKIRDLLERQEKRFGVNGSEKSKFMMFE 288
>pdb|2FSQ|A Chain A, Crystal Structure Of The Conserved Protein Of Unknown
Function Atu0111 From Agrobacterium Tumefaciens Str. C58
Length = 243
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 161 DQPVQGNNLAMTTLYSLESTISQRKAASKNGKPSWTKRLLLDSKL 205
D P + + LA T + SL T+ Q S+ P W + L LD+ +
Sbjct: 68 DXP-EASQLAFTPVSSLHXTVFQGVIESRRALPYWPQTLPLDTPI 111
>pdb|2QIP|A Chain A, Crystal Structure Of A Protein Of Unknown Function Vpa0982
From Vibrio Parahaemolyticus Rimd 2210633
Length = 165
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 65 AVAIAQNVDTGAILMQGFANRDALATTISSR---KATFYSRSRSTLWTKGETSQNFINVQ 121
A+ IA +VD IL+ G + L I R K T Y R T T + + NF+ +
Sbjct: 102 AIEIAPDVDR-VILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAID 160
Query: 122 DIFL 125
D FL
Sbjct: 161 DDFL 164
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 96 KATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYT-- 153
+A ++R+ + + G T +N+I +QD+ C + +P P H+ +E ++T
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTV---QPIRPKSHSKAEAVFFTTP 498
Query: 154 --SVLDALKDQPV 164
S L +P+
Sbjct: 499 PCSALKGKSHKPI 511
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,278,431
Number of Sequences: 62578
Number of extensions: 276390
Number of successful extensions: 835
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 19
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)