Query 023734
Match_columns 278
No_of_seqs 257 out of 1543
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02759 bifunctional phosphor 100.0 1.6E-85 3.5E-90 584.6 23.9 198 53-263 4-203 (203)
2 PLN02346 histidine biosynthesi 100.0 7.4E-84 1.6E-88 593.1 27.3 234 42-277 32-269 (271)
3 KOG4311 Histidinol dehydrogena 100.0 5.3E-61 1.1E-65 441.8 16.4 253 1-276 78-347 (359)
4 COG0139 HisI Phosphoribosyl-AM 100.0 4.2E-55 9E-60 355.9 12.4 103 52-154 6-109 (111)
5 PRK00051 hisI phosphoribosyl-A 100.0 4.9E-54 1.1E-58 357.1 12.6 105 52-156 2-106 (125)
6 PF01502 PRA-CH: Phosphoribosy 100.0 8E-44 1.7E-48 273.3 9.0 75 79-153 1-75 (75)
7 PRK00400 hisE phosphoribosyl-A 100.0 2.7E-36 5.9E-41 245.1 11.6 101 172-275 3-104 (105)
8 COG0140 HisI Phosphoribosyl-AT 100.0 6.3E-33 1.4E-37 220.3 9.9 89 174-265 1-90 (92)
9 TIGR03188 histidine_hisI phosp 100.0 2.1E-31 4.6E-36 208.8 9.0 83 174-259 1-84 (84)
10 PF01503 PRA-PH: Phosphoribosy 99.7 3.8E-18 8.1E-23 131.9 7.8 83 174-263 1-83 (83)
11 PF03819 MazG: MazG nucleotide 98.0 2.8E-05 6E-10 58.8 7.0 59 204-263 4-70 (74)
12 TIGR00444 mazG MazG family pro 97.2 0.0012 2.7E-08 61.3 7.4 60 204-264 21-88 (248)
13 PRK09562 mazG nucleoside triph 97.1 0.0014 3.1E-08 61.2 7.2 88 172-264 7-102 (262)
14 PRK09562 mazG nucleoside triph 96.7 0.0048 1E-07 57.7 7.3 60 204-264 165-228 (262)
15 COG1694 MazG Predicted pyropho 96.7 0.0089 1.9E-07 47.6 7.4 51 204-254 29-79 (102)
16 PRK12334 nucleoside triphospha 96.1 0.013 2.9E-07 55.4 6.3 84 173-264 63-156 (277)
17 PRK12333 nucleoside triphospha 95.1 0.075 1.6E-06 48.5 7.2 60 204-264 26-93 (204)
18 TIGR00444 mazG MazG family pro 91.5 0.72 1.6E-05 43.1 7.4 60 204-263 154-218 (248)
19 COG4696 Uncharacterized protei 89.6 0.86 1.9E-05 40.2 5.6 36 228-263 93-128 (180)
20 PF04447 DUF550: Protein of un 86.7 2.5 5.4E-05 34.7 6.3 54 204-264 21-74 (100)
21 PF12643 MazG-like: MazG-like 78.2 7.7 0.00017 31.5 6.1 52 213-265 18-72 (98)
22 COG3956 Protein containing tet 64.6 10 0.00022 37.8 4.6 188 42-264 115-326 (488)
23 PF04824 Rad21_Rec8: Conserved 41.1 14 0.0003 27.0 1.0 22 231-252 17-38 (55)
24 PHA02602 56 dCTP pyrophosphata 40.1 53 0.0011 29.4 4.6 36 226-261 124-159 (172)
25 TIGR02573 LcrG_PcrG type III s 39.9 65 0.0014 26.1 4.7 58 213-276 9-82 (90)
26 COG3956 Protein containing tet 39.5 60 0.0013 32.7 5.3 58 206-264 394-455 (488)
27 cd04474 RPA1_DBD_A RPA1_DBD_A: 36.9 1.2E+02 0.0026 24.0 5.9 55 62-116 34-90 (104)
28 cd00495 Ribosomal_L25_TL5_CTC 32.3 73 0.0016 24.7 3.9 32 61-94 21-52 (91)
29 PF07836 DmpG_comm: DmpG-like 32.2 57 0.0012 25.0 3.1 33 236-268 20-52 (66)
30 PRK12334 nucleoside triphospha 30.1 1.1E+02 0.0024 29.3 5.4 83 172-263 168-256 (277)
31 COG4997 Uncharacterized conser 29.8 2.1E+02 0.0045 23.3 6.0 47 204-258 35-81 (95)
32 PF14076 DUF4258: Domain of un 29.1 2.1E+02 0.0046 20.2 6.0 34 83-116 15-52 (73)
33 PF12554 MOZART1: Mitotic-spin 29.0 1.5E+02 0.0033 21.3 4.7 31 229-259 6-44 (48)
34 PF07216 LcrG: LcrG protein; 28.3 1.2E+02 0.0027 24.7 4.6 22 254-275 60-84 (93)
35 PF14420 Clr5: Clr5 domain 27.8 98 0.0021 22.1 3.6 27 236-265 10-36 (54)
36 COG1694 MazG Predicted pyropho 27.1 92 0.002 24.5 3.7 39 226-264 55-93 (102)
37 PF14076 DUF4258: Domain of un 26.7 78 0.0017 22.5 3.0 21 240-260 5-25 (73)
38 PRK05943 50S ribosomal protein 26.6 79 0.0017 24.9 3.2 32 61-94 22-53 (94)
39 PF03698 UPF0180: Uncharacteri 26.5 53 0.0011 25.9 2.2 21 243-263 59-79 (80)
40 PF05910 DUF868: Plant protein 24.7 1.7E+02 0.0037 28.1 5.6 39 62-102 94-135 (274)
41 PF15596 Imm34: Immunity prote 21.6 94 0.002 26.0 2.8 33 172-206 49-81 (110)
42 PF08518 GIT_SHD: Spa2 homolog 21.1 71 0.0015 21.0 1.6 13 253-265 18-30 (31)
43 PF01386 Ribosomal_L25p: Ribos 21.0 1.3E+02 0.0029 23.3 3.5 31 61-93 19-49 (88)
44 KOG3953 SOCS box protein SSB-1 20.7 82 0.0018 29.7 2.6 73 81-153 95-181 (242)
45 PF09137 Glucodextran_N: Gluco 20.4 1.4E+02 0.003 28.4 4.1 26 113-138 93-118 (269)
No 1
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=100.00 E-value=1.6e-85 Score=584.61 Aligned_cols=198 Identities=40% Similarity=0.671 Sum_probs=187.0
Q ss_pred hhhccccCCC-CeEEEEEEecCCCceEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEEEEeccCCCCc
Q 023734 53 LLDSVKWDNK-GLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS 131 (278)
Q Consensus 53 ~~~~i~~d~~-GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ 131 (278)
+++.|+||++ |||||||||+.||+|||+||||+|||.+||+||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus 4 ~~~~l~~~~~~gLip~ivqd~~tg~vLml~ymn~eal~~Tl~tg~~~~~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ 83 (203)
T PRK02759 4 QIEELDFDKNDGLIPAIVQDALTGEVLMLGYMNREALEKTLETGEVTFFSRSKQRLWTKGETSGNTQKVVSIRLDCDNDT 83 (203)
T ss_pred hhhccCcCCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEeCCCCcccCCCCCCCCeEEEEEEEecCCCCe
Confidence 4678999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCCCCcccccccccccccCCCcCCCchhhhHHHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHH
Q 023734 132 IIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKI 210 (278)
Q Consensus 132 ll~~v~~~g~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKI 210 (278)
||++|+|.|||||||++||||+.+.. +.+..+|.+|+++|.+||.++|++ |||++||++| ++|+|||
T Consensus 84 ll~~V~~~G~aCHtg~~sCF~~~~~~----------~~~~~~L~~L~~~I~~Rk~~~pe~--SYT~~L~~~G~~kI~kKv 151 (203)
T PRK02759 84 LLVLVEPIGPACHTGTRSCFYREKKA----------APPWDFLSQLEQLIAERKNAPPEG--SYTAKLFASGTKRIAQKV 151 (203)
T ss_pred EEEEEEecCCcCCCCCCCCCCCcccc----------cchhhHHHHHHHHHHHHHhCCCCC--cHHHHHHhCcHHHHHHHH
Confidence 99999999999999999999986510 112468999999999999998876 9999999998 8999999
Q ss_pred hHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHh
Q 023734 211 REEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 211 gEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~ 263 (278)
||||+|+++|++ ++|++++++|+||||||+||+|+++||+|+||++||++||
T Consensus 152 gEEA~E~iiAak-~~d~~~li~E~ADLlYHllVlL~~~gv~l~dV~~eL~~R~ 203 (203)
T PRK02759 152 GEEAVEVVLAAK-NNDKEELINEAADLLYHLLVLLADQGLSLSDVIAELKERH 203 (203)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 999999999986 7899999999999999999999999999999999999997
No 2
>PLN02346 histidine biosynthesis bifunctional protein hisIE
Probab=100.00 E-value=7.4e-84 Score=593.13 Aligned_cols=234 Identities=78% Similarity=1.162 Sum_probs=210.1
Q ss_pred CCCcchhhHHHhhhccccCCCCeEEEEEEecCCCceEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEE
Q 023734 42 SNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQ 121 (278)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~d~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~ 121 (278)
-.++.+.+++.+++.|+||++|||||||||+.||+||||||||+|||.+||+||++|||||||++||+|||||||+|+|+
T Consensus 32 ~~~~~~~~~~~~~~~l~~~~~gLipaivQd~~tg~VLml~ymn~eal~~Tl~tg~~~y~SRSR~~LW~KGetSG~~q~v~ 111 (271)
T PLN02346 32 AEPALEPKVESLLDSVKWDDKGLAVAIAQNVDTGAILMQGFANREAISATISSRKATFYSRSRSGLWTKGETSGNFINVH 111 (271)
T ss_pred cccccchhHHHHHHhcCcCCCCCEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEeCCCCccccCCCCcCCeEEEE
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCcEEEEEeeCCCCCCCCCcccccccccccccCCCcCCCchhhhHHHHHHHHHHHHHhc----CCCCCCchhh
Q 023734 122 DIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAA----SKNGKPSWTK 197 (278)
Q Consensus 122 ~i~~DCD~D~ll~~v~~~g~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~~L~~~I~~Rk~~----~~e~~~SYT~ 197 (278)
+|++|||+|||||+|+|.|||||||++||||+.+...........++.++.+|.+|+++|.+|+.+ +|+ +|||+
T Consensus 112 ~i~~DCD~D~ll~~V~~~G~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~~L~~~I~~Rk~~~~~~~~e--~SYT~ 189 (271)
T PLN02346 112 DIYLDCDRDSIIYLGTPDGPTCHTGAETCYYTSVDDALQNGGPHGNKLALTTLYSLEETIQQRKEEAVPQGGK--PSWTK 189 (271)
T ss_pred EEEecCCCCeEEEEEEecCCcccCCCCCCcCccccccccccccccccchhhHHHHHHHHHHHHHhccCCCCCC--CchHH
Confidence 999999999999999999999999999999986521100000111112346899999999999998 664 59999
Q ss_pred hhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHhCCCCccccccCCCC
Q 023734 198 RLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGIEEKRSRVSE 277 (278)
Q Consensus 198 ~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~~~SGi~EK~~R~~~ 277 (278)
+||+++++|++||||||+|+++|+.++++++++++|+||||||++|+|+++||+|+||+++|.+||+++|++||++|..+
T Consensus 190 ~L~~~~~~I~kKlgEEA~EliiAa~~~~dre~lieElADLLyHlLVLl~~~GIsleeV~~eL~~R~~~~g~~ek~~r~~~ 269 (271)
T PLN02346 190 RLLQDPELLCSKIREEAGELCQTLEENEGKERTASEMADVLYHAMVLLAKQGVKMEDVLEVLRKRFSQSGIEEKASRPPK 269 (271)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCccccccCccC
Confidence 99996699999999999999999844678999999999999999999999999999999999999999999999999764
No 3
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-61 Score=441.77 Aligned_cols=253 Identities=51% Similarity=0.738 Sum_probs=217.6
Q ss_pred Cccccccccccccccc--CCCccccccc---cccccceeccccC----CCCCCcchhhHHHhhhccccCC-CCeEEEEEE
Q 023734 1 MAVSYSQCVQSLKVSL--TGSDRCRDND---MKRNCLVFASSTE----SNSNPVLQSKVDRLLDSVKWDN-KGLAVAIAQ 70 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~d~-~GLiPaivQ 70 (278)
|++|+.+-.|++-+++ .|.++.++.. |..+..|..|... .+|++..+..++.+++.++||+ +||+...|.
T Consensus 78 ~~~Sq~A~~~~~~~s~~niPker~v~~e~g~F~~q~~v~~sfsv~~~v~~K~~~k~~l~d~~L~~i~tDr~dgl~~tlvv 157 (359)
T KOG4311|consen 78 MAVSQNALAQSLARSSCNIPKERVVVEENGSFRDQKLVSRSFSVFACVDNKNIAKQALVDNLLDRIKTDRKDGLVATLVV 157 (359)
T ss_pred HHHhHHHHHHHHHHhhccCCCcceecccCCccchHHHHhhccceeeeeccchHHHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence 6889999999998887 5655533322 3222222211111 3666889999999999999997 567665555
Q ss_pred ecCCCceEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEEEEeccCCCCcEEEEEeeCCC-CCCCCCcc
Q 023734 71 NVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGP-TCHTGSET 149 (278)
Q Consensus 71 d~~tg~VLmlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~v~~~g~-aCHtg~~S 149 (278)
+ ++|.|||++|.|+||+.+||.+|+++||||||++||.|||||||+|++.+|++|||+|||+|.|.|.|| +||+|+.+
T Consensus 158 ~-~~g~~Lglvysskes~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~ 236 (359)
T KOG4311|consen 158 V-DTGAVLGLVYSSKESLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTET 236 (359)
T ss_pred h-hhhhhhhhhcccHHHHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcce
Confidence 4 799999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred cccccccccccCCCcCCCchhhhHHHHHHHHHHHHHhcCCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchh
Q 023734 150 CYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSR 229 (278)
Q Consensus 150 CF~~~~~~~~~~~~~~~~~~~~~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~e 229 (278)
||++.. ..|..|+.+|.+||++.|++ |||++||.++..++.||.|||.|++.|.. +++
T Consensus 237 Cfg~~~----------------~gL~~LEs~l~~Rk~~aPee--SyTrRLftD~aLL~aKI~EEAeELc~a~~----k~e 294 (359)
T KOG4311|consen 237 CFGTSV----------------FGLYSLESILSKRKETAPEE--SYTRRLFTDDALLCAKIREEAEELCRALE----KNE 294 (359)
T ss_pred eeeeec----------------hhhhhHHHHHHHhhhcCCch--hhHHHhhCChHHHHHHHHHHHHHHHHhhc----ccC
Confidence 998743 47999999999999998876 99999999999999999999999999863 456
Q ss_pred hHhhHHHHHHHHHHHHHhCCCCHHHHHHHH----HhHhCCCCccc--cccCCC
Q 023734 230 TASEMADVLYHAMVLLALKDVKAEEVLEVL----RKRFSHSGIEE--KRSRVS 276 (278)
Q Consensus 230 li~EaADLlYHllVlL~~~gv~l~dV~~eL----~~R~~~SGi~E--K~~R~~ 276 (278)
++||+|||+||.|++|..+||+++||++.| ++|+..+|+++ |.+|.+
T Consensus 295 ~~wEmADl~YfA~~~lv~~gVsl~Dv~~~LnmkhrKvtrrkGdak~~~Q~k~k 347 (359)
T KOG4311|consen 295 TPWEMADLLYFAMVLLVKRGVSLEDVLEVLNMKHRKVTRRKGDAKFVKQNKTK 347 (359)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcHHHHHHHhhhHHHhHhhhcchhhhhccccch
Confidence 999999999999999999999999999999 88888999998 666544
No 4
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-55 Score=355.90 Aligned_cols=103 Identities=47% Similarity=0.865 Sum_probs=99.4
Q ss_pred HhhhccccCCCCeEEEEEEecCCCceEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEEEEeccCCCCc
Q 023734 52 RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS 131 (278)
Q Consensus 52 ~~~~~i~~d~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ 131 (278)
.++..++|+++|||||||||+.||+|||+||||+|||++|++||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus 6 ~~~~~~~~~~~gLvpaIvQd~~t~eVLMlaymN~eAl~kTleTg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Da 85 (111)
T COG0139 6 ALLDELDFDKDGLVPAIVQDAETGEVLMLAYMNEEALAKTLETGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDA 85 (111)
T ss_pred hhhhhcccCCCCeEEEEEEecCCCcEEEEEecCHHHHHHHHhcCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCC-CCCCCCCccccccc
Q 023734 132 IIYLGKPDG-PTCHTGSETCYYTS 154 (278)
Q Consensus 132 ll~~v~~~g-~aCHtg~~SCF~~~ 154 (278)
|||+|+|.| ||||||++||||+.
T Consensus 86 ll~~V~q~gg~aCHtG~~SCF~~~ 109 (111)
T COG0139 86 LLLLVEQIGGPACHTGTRSCFYRA 109 (111)
T ss_pred EEEEEEeCCCCcccCCCccccccc
Confidence 999999966 99999999999974
No 5
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=100.00 E-value=4.9e-54 Score=357.07 Aligned_cols=105 Identities=42% Similarity=0.810 Sum_probs=101.9
Q ss_pred HhhhccccCCCCeEEEEEEecCCCceEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEEEEeccCCCCc
Q 023734 52 RLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDS 131 (278)
Q Consensus 52 ~~~~~i~~d~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ 131 (278)
.+++.++||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||
T Consensus 2 ~~~~~l~~~~~GLipaivqd~~tg~VLMlaymn~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ 81 (125)
T PRK00051 2 KILDRLKFDADGLVPAIAQDAETGEVLMVAWMNEEALAKTLETGRAHYWSRSRQKLWRKGETSGHVQKVHEVRLDCDGDA 81 (125)
T ss_pred cHhhccccCCCCcEEEEEEECCCCCEEEEEEcCHHHHHHHHhcCcEEEEeCccCcccCCCCCcCCeEEEEEEEecCCCCE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCCCCCCccccccccc
Q 023734 132 IIYLGKPDGPTCHTGSETCYYTSVL 156 (278)
Q Consensus 132 ll~~v~~~g~aCHtg~~SCF~~~~~ 156 (278)
|||+|+|.|||||||++||||+++.
T Consensus 82 Ll~~V~q~G~aCHtg~~SCF~~~~~ 106 (125)
T PRK00051 82 VLLKVEQVGAACHTGRRSCFYRKLE 106 (125)
T ss_pred EEEEEEecCCcccCCCCCccceeec
Confidence 9999999999999999999999874
No 6
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=100.00 E-value=8e-44 Score=273.35 Aligned_cols=75 Identities=47% Similarity=0.914 Sum_probs=66.4
Q ss_pred EEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEEEEeccCCCCcEEEEEeeCCCCCCCCCcccccc
Q 023734 79 MQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYT 153 (278)
Q Consensus 79 mlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~v~~~g~aCHtg~~SCF~~ 153 (278)
|+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+||||++|+|.||+||||++|||++
T Consensus 1 Mlaymn~eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~aCHtg~~SCF~r 75 (75)
T PF01502_consen 1 MLAYMNKEALEKTLETGRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGPACHTGRRSCFYR 75 (75)
T ss_dssp EEEEE-HHHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-SSTTSBSSS--E
T ss_pred CceecCHHHHHHHHHhCcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCCCccCCCCCCcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999985
No 7
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=100.00 E-value=2.7e-36 Score=245.08 Aligned_cols=101 Identities=41% Similarity=0.562 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCC
Q 023734 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDV 250 (278)
Q Consensus 172 ~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv 250 (278)
.+|.+|+++|.+|+.++|++ |||++||.+| ++|+|||||||+|+++|++ ++|++++++|+||||||+||+|+++||
T Consensus 3 ~~l~~L~~~I~~Rk~~~~~~--SYT~~L~~~G~~ki~kKlgEEa~E~i~A~~-~~d~~~~i~E~ADLlYHllVlL~~~gv 79 (105)
T PRK00400 3 DTLERLAATIEERKGADPEG--SYTAKLLDKGLDKILKKVGEEATEVVIAAK-DGDREELVYEIADLLYHLLVLLAARGI 79 (105)
T ss_pred cHHHHHHHHHHHHHhCCCCC--cHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47999999999999998866 9999999998 8999999999999999986 789999999999999999999999999
Q ss_pred CHHHHHHHHHhHhCCCCccccccCC
Q 023734 251 KAEEVLEVLRKRFSHSGIEEKRSRV 275 (278)
Q Consensus 251 ~l~dV~~eL~~R~~~SGi~EK~~R~ 275 (278)
+|+||++||.+||+++|++||++|+
T Consensus 80 ~~~dV~~eL~~R~~~~g~~ek~~r~ 104 (105)
T PRK00400 80 SLEDVLAELERREGLSGLEEKASRK 104 (105)
T ss_pred CHHHHHHHHHHHcCCccchhhccCC
Confidence 9999999999999999999999886
No 8
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-33 Score=220.32 Aligned_cols=89 Identities=39% Similarity=0.573 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCH
Q 023734 174 LYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKA 252 (278)
Q Consensus 174 L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l 252 (278)
|.+|+++|.+|++.+|++ |||++||++| ++|+|||||||+|+++|++ ++|++++++|+||||||+||+|++.||++
T Consensus 1 l~~L~~~i~~Rk~~~pe~--SYTa~L~~~G~~ki~kKvGEEa~E~~iAa~-~~d~e~l~~E~ADLlYH~lVlL~~~gv~l 77 (92)
T COG0140 1 LSELEAVIADRKNARPEG--SYTAKLLAKGIDKIAKKVGEEAVEVILAAK-DEDKEELVSEAADLLYHLLVLLAAQGLSL 77 (92)
T ss_pred ChHHHHHHHHHHhcCCCc--hHHHHHHHCcHHHHHHHHhHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 468999999999999876 9999999998 9999999999999999986 67999999999999999999999999999
Q ss_pred HHHHHHHHhHhCC
Q 023734 253 EEVLEVLRKRFSH 265 (278)
Q Consensus 253 ~dV~~eL~~R~~~ 265 (278)
+||+++|.+||++
T Consensus 78 ~dV~~eL~~R~~~ 90 (92)
T COG0140 78 EDVLRELERRHGK 90 (92)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999986
No 9
>TIGR03188 histidine_hisI phosphoribosyl-ATP pyrophosphohydrolase. This enzyme, phosphoribosyl-ATP pyrophosphohydrolase, catalyses the second step in the histidine biosynthesis pathway. It often occurs as a fusion protein. This model a somewhat narrower scope than Pfam model pfam01503, as some paralogs that appear to be functionally distinct are excluded from this model.
Probab=99.97 E-value=2.1e-31 Score=208.78 Aligned_cols=83 Identities=43% Similarity=0.576 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCH
Q 023734 174 LYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKA 252 (278)
Q Consensus 174 L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l 252 (278)
|.+|+++|.+|+.++|++ |||++||++| ++|+|||||||+|+++|++ ++|++++++|+||||||+||+|+++||+|
T Consensus 1 l~~L~~~I~~R~~~~~~~--SYT~~L~~~G~~ki~kKvgEEa~E~iiAa~-~~d~~~~~~E~ADLlYHllVlL~~~gi~~ 77 (84)
T TIGR03188 1 LEELEATIAERKAADPEG--SYTARLFAKGLDKILKKVGEEAVEVVIAAK-NGDKEELVYEAADLLYHLLVLLAAQGVSL 77 (84)
T ss_pred CHHHHHHHHHHHhCCCCC--cHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 468999999999999866 9999999998 9999999999999999986 68999999999999999999999999999
Q ss_pred HHHHHHH
Q 023734 253 EEVLEVL 259 (278)
Q Consensus 253 ~dV~~eL 259 (278)
+||++||
T Consensus 78 ~dV~~eL 84 (84)
T TIGR03188 78 EDVLAEL 84 (84)
T ss_pred HHHHhhC
Confidence 9999986
No 10
>PF01503 PRA-PH: Phosphoribosyl-ATP pyrophosphohydrolase; InterPro: IPR021130 Phosphoribosyl-ATP pyrophosphatase, 3.6.1.31 from EC catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi The Neurospora crassa enzyme also catalyzes the reactions of histidinol dehydrogenase (1.1.1.23 from EC) and phosphoribosyl-AMP cyclohydrolase (3.5.4.19 from EC). This entry also includes the Bacillus subtilis Cof proteins, which catalyze the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate []. ; PDB: 2A7W_K 3NL9_A 1YXB_D 1YVW_A 2YFD_C 2YFC_B 2YF3_C 2YF4_A 2YEU_E 2YF9_A ....
Probab=99.74 E-value=3.8e-18 Score=131.92 Aligned_cols=83 Identities=39% Similarity=0.505 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHH
Q 023734 174 LYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAE 253 (278)
Q Consensus 174 L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~ 253 (278)
+.+|.++|.+|+...|.+ | |.+|+.. +++||+||+.|++.|++ ++|+.++++|+|||+||++++|..+|++++
T Consensus 1 v~ef~~~~~~~~~~~p~~--~-~~~l~~~---~~~kl~EE~~E~~~A~~-~~d~~~~~~e~aDlly~~~~~~~~~gi~~~ 73 (83)
T PF01503_consen 1 VEEFHRTIDQRKKEAPEG--S-TKELLDL---RLKKLGEEAGELIEAAK-NGDKEEVADELADLLYHLLGLLASMGIDLD 73 (83)
T ss_dssp HHHHHHHHHHCCHSSTTT--H-HHHHHHH---HHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHTT--HH
T ss_pred CHHHHHHHHhHhhCCCCC--C-cHHHHHH---HHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 467899999999997764 6 9999966 78999999999999986 679999999999999999999999999999
Q ss_pred HHHHHHHhHh
Q 023734 254 EVLEVLRKRF 263 (278)
Q Consensus 254 dV~~eL~~R~ 263 (278)
+|+++|++|+
T Consensus 74 ~v~~ev~~~N 83 (83)
T PF01503_consen 74 EVFDEVHRRN 83 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999995
No 11
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=97.97 E-value=2.8e-05 Score=58.78 Aligned_cols=59 Identities=32% Similarity=0.503 Sum_probs=50.7
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHh----CCCCHHHHHHH----HHhHh
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLAL----KDVKAEEVLEV----LRKRF 263 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~----~gv~l~dV~~e----L~~R~ 263 (278)
..++.|+.||+.|++-|.. .++.+++..|.||+++.++.++.. .|++++++++. +.+|+
T Consensus 4 ~~~~~~l~eE~~El~~ai~-~~~~~~l~eElgDvl~~l~~la~~~~~~~~idle~~~~~~~~K~~~R~ 70 (74)
T PF03819_consen 4 ESLLLKLIEEVGELAEAIR-KEDRENLEEELGDVLFYLLQLARILEERLGIDLEEALERKMEKLERRY 70 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHCHTTSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHhHcCCCCHHHHHHHHHHHHhccC
Confidence 3467899999999999975 478899999999999999999997 99999998755 55665
No 12
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=97.17 E-value=0.0012 Score=61.28 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=51.0
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHH---HHhCC-CCHHHHHHH----HHhHhC
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVL---LALKD-VKAEEVLEV----LRKRFS 264 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVl---L~~~g-v~l~dV~~e----L~~R~~ 264 (278)
..+..++.||+.|+..|.. ++|.+++..|..||||+++.. ....| ++++||+.. |.+||.
T Consensus 21 ~sl~~~l~EE~~El~~Ai~-~~d~~~l~eELGDlL~qvv~~a~iar~~g~f~~edvl~~~~~K~irRhp 88 (248)
T TIGR00444 21 QSLIPYTLEETYEVLEAIA-REDFDDLREELGDLLLQVVFYAQMAQEEGYFDFDDVCAGISEKLVRRHP 88 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch
Confidence 3478999999999999874 678899999999999999888 47899 999998876 556653
No 13
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=97.10 E-value=0.0014 Score=61.21 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhC---
Q 023734 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALK--- 248 (278)
Q Consensus 172 ~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~--- 248 (278)
..|.+|..+|.. ...++.| -.|... +....+..|+.||+.|++.|.. ++|.+.+..|..||||+++.+-...
T Consensus 7 ~~~~~l~~~~~~-lr~~~~G-cpWd~~--Qt~~sl~~~l~EE~~El~~ai~-~~d~~~l~eElGDvL~~vv~~a~~~~e~ 81 (262)
T PRK09562 7 EAIDRLLEIMAR-LRDPEGG-CPWDKE--QTFASLAPYTIEEAYEVVDAIE-RGDLDDLREELGDLLLQVVFHAQMAEEQ 81 (262)
T ss_pred HHHHHHHHHHHH-HhCCCCC-CCCCcc--cCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357778887763 3332222 234221 1124678999999999999875 5788999999999999988887777
Q ss_pred -CCCHHHHHHH----HHhHhC
Q 023734 249 -DVKAEEVLEV----LRKRFS 264 (278)
Q Consensus 249 -gv~l~dV~~e----L~~R~~ 264 (278)
++++++|++. |.+||.
T Consensus 82 ~~~d~e~vl~~~~~K~~~R~p 102 (262)
T PRK09562 82 GAFDFADVVEAISDKLIRRHP 102 (262)
T ss_pred CCCCHHHHHHHHHHHHhhhch
Confidence 8999998765 667774
No 14
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=96.73 E-value=0.0048 Score=57.69 Aligned_cols=60 Identities=27% Similarity=0.445 Sum_probs=51.5
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH----HHhHhC
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV----LRKRFS 264 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e----L~~R~~ 264 (278)
..+..|+.||..|+..|.. .++.+.+..|.+||||++..+-...|++++++++. +.+||.
T Consensus 165 ~~~~~kl~EE~~El~~Ai~-~~~~~~l~eElGDlLf~lv~lAr~~~id~E~aL~~a~~Kf~rR~~ 228 (262)
T PRK09562 165 EPVLDKVEEEIDELKEALA-QGDQAKIEEEFGDLLFALVNLARHLGIDPEAALRKANAKFERRFR 228 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH-ccChhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhHH
Confidence 4577999999999999875 56889999999999999999999999999998765 555553
No 15
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=96.66 E-value=0.0089 Score=47.59 Aligned_cols=51 Identities=29% Similarity=0.362 Sum_probs=43.5
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHH
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEE 254 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~d 254 (278)
..++-.+.||+.|++.|..++.+.+++..|.+|+|++++.+....+++...
T Consensus 29 ~~~~~~l~eE~gEv~eai~~~~~~~~l~eELgDvL~~v~~~a~~~~~~~~~ 79 (102)
T COG1694 29 ESLLLYLVEEAGEVAEAIRKEEDLEDLKEELGDVLADVLFLANLLDIDLEF 79 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566789999999999998755478899999999999999988888877743
No 16
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=96.09 E-value=0.013 Score=55.44 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCH
Q 023734 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKA 252 (278)
Q Consensus 173 ~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l 252 (278)
-|.+++++++.=+... -|... +.-..+..++.||+.|+..|.. ++|.+++..|..||||+++..-.-.++..
T Consensus 63 aL~~a~~I~~rlr~~g-----pWd~~--QTh~sl~~~l~EE~~El~eAI~-~~d~~~l~EELGDlLfqVvf~Aria~~~~ 134 (277)
T PRK12334 63 RLLDAVAVMDRLRSPG-----PWESE--QTHRSLARYLLEETYELLDAIE-SGDRDELREELGDVLLQVLFHARIAEEAP 134 (277)
T ss_pred HHHHHHHHHHHHhCCC-----CCCcc--cccHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4677888776322211 12110 0013578999999999999874 67899999999999999998887776655
Q ss_pred ------HHHHHH----HHhHhC
Q 023734 253 ------EEVLEV----LRKRFS 264 (278)
Q Consensus 253 ------~dV~~e----L~~R~~ 264 (278)
+||++. |.+||.
T Consensus 135 e~~F~~~dvl~~~~~KfirRhP 156 (277)
T PRK12334 135 EDPFDIDDVAATLVAKLVRRHP 156 (277)
T ss_pred CCCCCHHHHHHHHHHHHHHHhH
Confidence 466654 666663
No 17
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=95.14 E-value=0.075 Score=48.46 Aligned_cols=60 Identities=25% Similarity=0.227 Sum_probs=47.1
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHH----HHHhCCCCHHHHHHH----HHhHhC
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMV----LLALKDVKAEEVLEV----LRKRFS 264 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllV----lL~~~gv~l~dV~~e----L~~R~~ 264 (278)
..|..=+.||+.|++-|.. ++|.+++..|..|||+|.+. .=..-..+++||++. |-+||-
T Consensus 26 ~SL~~yllEE~yEv~dAI~-~~d~~~l~EELGDlLlqVvfha~iaee~g~F~~~DV~~~i~~KlirRHP 93 (204)
T PRK12333 26 ESLRPYLLEEAAEAVDALS-EGDPQELAEELGDVLLQVAFHSVIAEEEGRFTYPDVERGIVEKLIRRHP 93 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCC
Confidence 4577889999999999875 67999999999999876554 444566889998766 566764
No 18
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=91.54 E-value=0.72 Score=43.08 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=48.3
Q ss_pred hhHHHHHhHhHHHHHHhhhcc-CCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH----HHhHh
Q 023734 204 KLLCSKIREEADELCRTLEEN-EDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV----LRKRF 263 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~-~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e----L~~R~ 263 (278)
..+..||-||-.|+..|...+ ++++++-.|.+||||-+.-+....||+++.-+.. +.+||
T Consensus 154 ~~~~~k~~EE~~El~~a~~~~~~~~~~ieeElGDlLFalvnlAr~~giDpE~ALr~a~~KF~~Rf 218 (248)
T TIGR00444 154 SPVWDKVYEELDEVMYEARQAVVEQNKLEEEMGDLLFATVNLARHLKTDAEIALQKANEKFERRF 218 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 456789999999998776422 2457788999999999999999999999997764 45555
No 19
>COG4696 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.55 E-value=0.86 Score=40.21 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=31.4
Q ss_pred hhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHh
Q 023734 228 SRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 228 ~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~ 263 (278)
-..+.+.|||||+..=.|.-.||+++.|.++.++-.
T Consensus 93 ~gqvdalaDlLYfTYGslvlmGiDp~~iF~~VHrAN 128 (180)
T COG4696 93 IGQVDALADLLYFTYGSLVLMGIDPDAIFAAVHRAN 128 (180)
T ss_pred hhHHHHHHHHHHHhhhhHHHhcCCHHHHHHHHHHhh
Confidence 346789999999999999999999999999987643
No 20
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=86.74 E-value=2.5 Score=34.75 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=43.0
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHhC
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRFS 264 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~~ 264 (278)
...++-+.+|+.|+..+ +.++ .|-||+++=++=.....|+++++|++.+..-..
T Consensus 21 ~g~lkHl~kE~~E~~~~------p~Dl-~EwaDv~~Ll~D~~~RaGis~~~i~~A~~~K~~ 74 (100)
T PF04447_consen 21 VGPLKHLSKEALEAEAA------PGDL-SEWADVQILLWDGARRAGISPEQIIDAMEAKLA 74 (100)
T ss_pred chHHHHHHHHHHHHHhC------CCCH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45789999999998764 2333 499999887777778999999999998876553
No 21
>PF12643 MazG-like: MazG-like family
Probab=78.23 E-value=7.7 Score=31.45 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=38.8
Q ss_pred hHHHHHHhhhccCCc---hhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHhCC
Q 023734 213 EADELCRTLEENEDN---SRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRFSH 265 (278)
Q Consensus 213 EA~E~iiAa~~~~d~---~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~~~ 265 (278)
|..|+-.+.. .++. +.+..|.||++--+.+|-...|+++.++-+.+.++-..
T Consensus 18 el~elfq~~~-~~~~~~~e~i~deLAdvii~~ylLa~rLGid~~~lD~~i~~KL~~ 72 (98)
T PF12643_consen 18 ELLELFQWLT-SGSEVAQEAIKDELADVIIYCYLLADRLGIDFRELDEIIKEKLKK 72 (98)
T ss_pred HHHHHHhhcc-cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4445544332 2344 88999999999999999999999988777777666653
No 22
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=64.58 E-value=10 Score=37.84 Aligned_cols=188 Identities=21% Similarity=0.333 Sum_probs=100.9
Q ss_pred CCCcchhhHHHhhhccccCC-CCe-------EEEEEEecCCCceEEEee--cCHHHHHHHHh----cCcEEEEeCCCCcc
Q 023734 42 SNPVLQSKVDRLLDSVKWDN-KGL-------AVAIAQNVDTGAILMQGF--ANRDALATTIS----SRKATFYSRSRSTL 107 (278)
Q Consensus 42 ~~~~~~~~~~~~~~~i~~d~-~GL-------iPaivQd~~tg~VLmlay--mN~eAl~~Tl~----tg~~~y~SRSr~~l 107 (278)
+.++.+++++.+++.++-|+ +|+ +...+-|..++-|..++| |-..-+..||- .-+-+|+-|.-+
T Consensus 115 kilgg~SFiD~~fealkiDPveG~q~vDa~~l~~~il~vr~hivItQVY~~miAs~vKltLmE~ypDDyev~ivtaag-- 192 (488)
T COG3956 115 KILGGQSFIDALFEALKIDPVEGFQIVDATDLSNDILDVRLHIVITQVYDQMIASDVKLTLMEYYPDDYEVYIVTAAG-- 192 (488)
T ss_pred EEeCcchhHHHHHHHhcCCcccCceEeccchhhHHHHhhhhceeehhHHHHHHHHhHHHHHHHhCCCCceEEEEEecc--
Confidence 34677889999999999987 454 223344566777887777 44444555553 344555555433
Q ss_pred eeccCCCCCeeEEEEEeccCCCCcEEEEEeeCCCCCCCCCcccccccccccccCCCcCCCchhhhHHHHHHHHHHHHHhc
Q 023734 108 WTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAA 187 (278)
Q Consensus 108 W~KGetSG~~q~v~~i~~DCD~D~ll~~v~~~g~aCHtg~~SCF~~~~~~~~~~~~~~~~~~~~~~L~~L~~~I~~Rk~~ 187 (278)
.+||.|=.+-.+-++ |+++-+ .+-.|-|...+. .+..-..-+..|-++|+.=+..
T Consensus 193 -s~~ee~v~tvPLyEL----Dr~~ai-----------nnLTsVyVP~ii---------~~~~ly~dF~~~~~ii~~Lrge 247 (488)
T COG3956 193 -SENEESVRTVPLYEL----DRQSAI-----------NNLTSVYVPPII---------NETYLYHDFYTLRNIIETLRGE 247 (488)
T ss_pred -CCCccceeeecceee----chhhhh-----------hhcceeeccccc---------cchhhhhhHHHHHHHHHHhcCC
Confidence 356665444444333 222100 011222222111 0100112233444444432222
Q ss_pred CCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhC------CCCHHHHHHH---
Q 023734 188 SKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALK------DVKAEEVLEV--- 258 (278)
Q Consensus 188 ~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~------gv~l~dV~~e--- 258 (278)
+| -.|-..=-+ ..+-+-+.||+.|+..|. +++|.+.++.|..|+|+. |+|++. -++.+||+.-
T Consensus 248 --nG-CPWDk~QtH--qtlKryliEE~yEl~EAI-d~edddhmvEELGDvLlQ--VllHaqIGkdeGyf~I~dVI~~i~~ 319 (488)
T COG3956 248 --NG-CPWDKKQTH--QTLKRYLIEECYELLEAI-DEEDDDHMVEELGDVLLQ--VLLHAQIGKDEGYFNINDVISGISE 319 (488)
T ss_pred --CC-CCCchhhHH--HHHHHHHHHHHHHHHHHh-hccchHhHHHHHHHHHHH--HHHHHhhcccCCeeeHHHHHHHHHH
Confidence 22 123221111 234467899999999987 467889999999999874 444432 3567776644
Q ss_pred -HHhHhC
Q 023734 259 -LRKRFS 264 (278)
Q Consensus 259 -L~~R~~ 264 (278)
+-|||-
T Consensus 320 KMIrRHP 326 (488)
T COG3956 320 KMIRRHP 326 (488)
T ss_pred HHHHhCc
Confidence 445553
No 23
>PF04824 Rad21_Rec8: Conserved region of Rad21 / Rec8 like protein; InterPro: IPR006909 This domain represents a conserved C-terminal region found in eukaryotic cohesins of the Rad21, Rec8 and Scc1 families. Rad21/Rec8 like proteins mediate sister chromatid cohesion during mitosis and meiosis, as part of the cohesin complex []. Cohesion is necessary for homologous recombination (including double-strand break repair) and correct chromatid segregation. These proteins may also be involved in chromosome condensation. Dissociation at the metaphase to anaphase transition causes loss of cohesion and chromatid segregation [].; GO: 0000228 nuclear chromosome; PDB: 1W1W_E.
Probab=41.11 E-value=14 Score=26.97 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.4
Q ss_pred HhhHHHHHHHHHHHHHhCCCCH
Q 023734 231 ASEMADVLYHAMVLLALKDVKA 252 (278)
Q Consensus 231 i~EaADLlYHllVlL~~~gv~l 252 (278)
..|+|..+||+|||....=|.+
T Consensus 17 r~~AA~~Fy~~LvL~t~~~I~v 38 (55)
T PF04824_consen 17 RKEAARAFYELLVLATKGYIDV 38 (55)
T ss_dssp -HHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHhhCCeEEe
Confidence 4799999999999887765544
No 24
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=40.05 E-value=53 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=31.4
Q ss_pred CchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 023734 226 DNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRK 261 (278)
Q Consensus 226 d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~ 261 (278)
|..++..|..|+|=++|-+....|+++++|++....
T Consensus 124 D~le~k~ElID~~HF~l~~~~~LG~t~eeI~~aY~~ 159 (172)
T PHA02602 124 DQLEIKFELIDQLHFVLNKFIALGMDAEEIFKLYYL 159 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 455889999999999999999999999999886543
No 25
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=39.85 E-value=65 Score=26.09 Aligned_cols=58 Identities=28% Similarity=0.372 Sum_probs=32.9
Q ss_pred hHHHHHHhhhccCCchhhHhhHHH------HHHHHHHHHHhCCCCH-------HHHHHHHHhHhC---CCCccccccCCC
Q 023734 213 EADELCRTLEENEDNSRTASEMAD------VLYHAMVLLALKDVKA-------EEVLEVLRKRFS---HSGIEEKRSRVS 276 (278)
Q Consensus 213 EA~E~iiAa~~~~d~~eli~EaAD------LlYHllVlL~~~gv~l-------~dV~~eL~~R~~---~SGi~EK~~R~~ 276 (278)
++.|++|+ +++.+.++..|+-+ ..-++|+. |-+. .+++.|+.||.. ++|-+-|++|..
T Consensus 9 ~~AElAI~--dsd~R~~llqEm~~gLgl~p~ag~~Lf~----~~~~e~~~~AEqELL~EiqRrr~~qp~~~~~GkR~RRP 82 (90)
T TIGR02573 9 QAAELAIR--DSDERNDLLQEMWQGLGLGPVAGEVLFG----GLNAELMQHAEQELLEEVQRRRSQQPQQGEQGKRPRRP 82 (90)
T ss_pred HHHHHHHh--chHHHHHHHHHHHHHcCCChHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 56777775 45566677776522 22222221 2222 347889999876 455666666643
No 26
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=39.48 E-value=60 Score=32.66 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=42.5
Q ss_pred HHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHH----HHHHhHhC
Q 023734 206 LCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVL----EVLRKRFS 264 (278)
Q Consensus 206 i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~----~eL~~R~~ 264 (278)
+..|++||-.|+-... +.--+++++.|..||||-+.=.-...+|..++-+ +.+.|||.
T Consensus 394 ~w~k~~Ee~~e~~ev~-~g~h~~~~a~efgd~lf~lvniarfy~i~~eeal~~tndkf~rrf~ 455 (488)
T COG3956 394 AWDKVLEEMREVKEVY-KGIHRDRIAEEFGDLLFSLVNIARFYDIDSEEALNYTNDKFIRRFY 455 (488)
T ss_pred HHHHHHHHhhhHHHHH-hchhHHHHHHHhhhhhhhhhhHHHHhcCCHHHHHhhhHHHHHHHHH
Confidence 3356777777743322 1235788999999999998888888999998855 45778874
No 27
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=36.94 E-value=1.2e+02 Score=24.01 Aligned_cols=55 Identities=20% Similarity=0.132 Sum_probs=43.1
Q ss_pred CCeEEEEEEecCCCceEEEeecCH-HHHHHHHhcCcEEEEeCCCCccee-ccCCCCC
Q 023734 62 KGLAVAIAQNVDTGAILMQGFANR-DALATTISSRKATFYSRSRSTLWT-KGETSQN 116 (278)
Q Consensus 62 ~GLiPaivQd~~tg~VLmlaymN~-eAl~~Tl~tg~~~y~SRSr~~lW~-KGetSG~ 116 (278)
..++..++.|-.+|++-...|-+. +.+...|+.|+++|+|+=+-+-+. +--+++|
T Consensus 34 g~~~~~~l~De~~~~I~~t~~~~~~~~f~~~l~eG~vy~i~~~~V~~a~~~y~~~~~ 90 (104)
T cd04474 34 GKLFSFDLLDEDGGEIRATFFNDAVDKFYDLLEVGKVYYISKGSVKVANKKFNTLKN 90 (104)
T ss_pred cEEEEEEEEECCCCEEEEEEehHHHHHhhcccccccEEEEeccEEeeccccCCCCCC
Confidence 458899999988999999999763 668889999999999997766553 3344444
No 28
>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L
Probab=32.32 E-value=73 Score=24.74 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=23.0
Q ss_pred CCCeEEEEEEecCCCceEEEeecCHHHHHHHHhc
Q 023734 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (278)
Q Consensus 61 ~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~t 94 (278)
++|.||+|+-. .|.==....++...|.+.+.+
T Consensus 21 ~~G~iPavvYG--~~~~~~~i~v~~~~l~k~l~~ 52 (91)
T cd00495 21 RAGKVPAVIYG--KGKEPISISVDEKELEKLLRK 52 (91)
T ss_pred HCCCCCEEEEC--CCCCCEEEEEcHHHHHHHHhh
Confidence 57999999944 332234458899999888754
No 29
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=32.23 E-value=57 Score=24.99 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhHhCCCCc
Q 023734 236 DVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGI 268 (278)
Q Consensus 236 DLlYHllVlL~~~gv~l~dV~~eL~~R~~~SGi 268 (278)
-.+-|+.=.-..+||++.||+-||.+|.-..|=
T Consensus 20 sFl~ha~raa~~ygVd~r~il~elgrR~~VgGQ 52 (66)
T PF07836_consen 20 SFLLHAERAAERYGVDPRDILVELGRRKLVGGQ 52 (66)
T ss_dssp THHHHHHHHHHHHT--HHHHHHHHHHCT--TT-
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHhcccccCch
Confidence 356788888889999999999999999876663
No 30
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=30.08 E-value=1.1e+02 Score=29.31 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhhhhhcC-----C-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHH
Q 023734 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLD-----S-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLL 245 (278)
Q Consensus 172 ~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~-----g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL 245 (278)
.-+..+++.++..-+. ..| .+.+ + -..+.||.+.|.-+-.... +.....+-.|..||||-+.-+-
T Consensus 168 eev~~~We~~K~~Ek~----~~s----~ldgip~~lPaL~~A~ki~~ra~~~Gf~~~-~~~~~~~e~e~GdlLf~lv~~a 238 (277)
T PRK12334 168 EEQLAQWEARKAAEKA----RTS----VLDGVPLGQPALALAAKVLSRARKAGLPVP-LAPAEDSEDELGALLLALVAVA 238 (277)
T ss_pred HHHHHHHHHHHHHhhh----ccc----chhcCCCCCCHHHHHHHHHHHHHhcCCCCC-CccchhhHHHHHHHHHHHHHHH
Confidence 4466666666644221 123 4443 2 2467899999887765432 2222345689999999999999
Q ss_pred HhCCCCHHHHHHHHHhHh
Q 023734 246 ALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 246 ~~~gv~l~dV~~eL~~R~ 263 (278)
...||+++.-+..-.+||
T Consensus 239 r~~~idpE~aLr~a~~kf 256 (277)
T PRK12334 239 VAAGVDAEAALRAAVRDF 256 (277)
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 999999999776544433
No 31
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=29.76 E-value=2.1e+02 Score=23.30 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=37.0
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV 258 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e 258 (278)
..+..|+-||+.|.... .-..|.||++=-..=...++|.+-+.+++-
T Consensus 35 ~~Le~KL~EE~~E~led--------k~lEeLadllEvi~~ia~a~gfske~l~~~ 81 (95)
T COG4997 35 ELLENKLLEEVEEFLED--------KNLEELADLLEVISRIAEARGFSKENLEAL 81 (95)
T ss_pred HHHHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45678999999999762 234799999888888888999998877654
No 32
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=29.10 E-value=2.1e+02 Score=20.23 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=26.3
Q ss_pred cCHHHHHHHHhcCcEEE----EeCCCCcceeccCCCCC
Q 023734 83 ANRDALATTISSRKATF----YSRSRSTLWTKGETSQN 116 (278)
Q Consensus 83 mN~eAl~~Tl~tg~~~y----~SRSr~~lW~KGetSG~ 116 (278)
.+.+-+..+|.+|+..+ -.+...++|..+...|+
T Consensus 15 Is~~~I~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 52 (73)
T PF14076_consen 15 ISEEDIEDALENGEIIEDYSDDKRGPCRLYIGGGKEGR 52 (73)
T ss_pred CCHHHHHHHHhcCeEeeecCCCCCCCeEEEEEecCCCC
Confidence 56788899999999996 44555677778777777
No 33
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=29.01 E-value=1.5e+02 Score=21.27 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=22.5
Q ss_pred hhHhhHHHHH--------HHHHHHHHhCCCCHHHHHHHH
Q 023734 229 RTASEMADVL--------YHAMVLLALKDVKAEEVLEVL 259 (278)
Q Consensus 229 eli~EaADLl--------YHllVlL~~~gv~l~dV~~eL 259 (278)
++++|+++|+ .-++|.|-..||.|+......
T Consensus 6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI 44 (48)
T PF12554_consen 6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVI 44 (48)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4666777765 456888999999998755544
No 34
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=28.29 E-value=1.2e+02 Score=24.67 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=14.2
Q ss_pred HHHHHHHhHhC---CCCccccccCC
Q 023734 254 EVLEVLRKRFS---HSGIEEKRSRV 275 (278)
Q Consensus 254 dV~~eL~~R~~---~SGi~EK~~R~ 275 (278)
++++|+.||.. +++-+-|++|.
T Consensus 60 ELL~Ei~Rrr~~qp~~~~~G~r~rR 84 (93)
T PF07216_consen 60 ELLEEIQRRRQQQPQQPEEGKRPRR 84 (93)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 47888888876 35555555443
No 35
>PF14420 Clr5: Clr5 domain
Probab=27.77 E-value=98 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhHhCC
Q 023734 236 DVLYHAMVLLALKDVKAEEVLEVLRKRFSH 265 (278)
Q Consensus 236 DLlYHllVlL~~~gv~l~dV~~eL~~R~~~ 265 (278)
+.|++|-+ ..|.|++||.+.++++|+-
T Consensus 10 ~~I~~LY~---~e~~tl~~v~~~M~~~~~F 36 (54)
T PF14420_consen 10 EEIERLYI---DENKTLEEVMEIMKEEHGF 36 (54)
T ss_pred HHHHHHHH---hCCCcHHHHHHHHHHHhCC
Confidence 44455443 7899999999999999874
No 36
>COG1694 MazG Predicted pyrophosphatase [General function prediction only]
Probab=27.12 E-value=92 Score=24.49 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=33.5
Q ss_pred CchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHhC
Q 023734 226 DNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRFS 264 (278)
Q Consensus 226 d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~~ 264 (278)
-++++....+++++|+..+=......+.+|+....+|..
T Consensus 55 l~eELgDvL~~v~~~a~~~~~~~~~~~~~v~~~~~~k~~ 93 (102)
T COG1694 55 LKEELGDVLADVLFLANLLDIDLEFALEEVVRKIAEKLE 93 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 357888899999999999999999999999997666653
No 37
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=26.73 E-value=78 Score=22.55 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHH
Q 023734 240 HAMVLLALKDVKAEEVLEVLR 260 (278)
Q Consensus 240 HllVlL~~~gv~l~dV~~eL~ 260 (278)
|+.-.|..+||+.++|.+.|.
T Consensus 5 Ha~~rm~eR~Is~~~I~~~l~ 25 (73)
T PF14076_consen 5 HARERMQERGISEEDIEDALE 25 (73)
T ss_pred HHHHHHHhCCCCHHHHHHHHh
Confidence 889999999999999999994
No 38
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=26.60 E-value=79 Score=24.95 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=23.3
Q ss_pred CCCeEEEEEEecCCCceEEEeecCHHHHHHHHhc
Q 023734 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (278)
Q Consensus 61 ~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~t 94 (278)
.+|.||+|+ |.-|.==+-..+++..|.+.+.+
T Consensus 22 ~~G~vPaVi--YG~~~~~~~i~v~~~el~k~l~~ 53 (94)
T PRK05943 22 RAGKFPAII--YGGNEAPVSIVLDHKDVINLQAK 53 (94)
T ss_pred HCCCCCEEE--ECCCCCcEEEEEcHHHHHHHHhc
Confidence 579999999 44442235568999999888754
No 39
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=26.52 E-value=53 Score=25.87 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.5
Q ss_pred HHHHhCCCCHHHHHHHHHhHh
Q 023734 243 VLLALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 243 VlL~~~gv~l~dV~~eL~~R~ 263 (278)
....+.|.|++||.++|++|.
T Consensus 59 pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 59 PVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred eEEecCCCCHHHHHHHHHHhh
Confidence 456789999999999999996
No 40
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=24.74 E-value=1.7e+02 Score=28.05 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCeEEEEEEecCCCceEEEeecCHHHHHHHHhc---CcEEEEeC
Q 023734 62 KGLAVAIAQNVDTGAILMQGFANRDALATTISS---RKATFYSR 102 (278)
Q Consensus 62 ~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~t---g~~~y~SR 102 (278)
.|.+-|||-| .--||.||=|.+||+.+|-.. ..+...||
T Consensus 94 sgfYVavv~d--~EvvLllGDl~~ea~~rt~~~~~~~~~~LvsR 135 (274)
T PF05910_consen 94 SGFYVAVVVD--GEVVLLLGDLKKEAYKRTKSRPSPSEAVLVSR 135 (274)
T ss_pred CccEEEEEEC--CEEEEEecCchhHHHhhccCCCCccceeEEEE
Confidence 6888899855 468999999999999999544 35666666
No 41
>PF15596 Imm34: Immunity protein 34
Probab=21.63 E-value=94 Score=25.99 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhhhhhcCChhH
Q 023734 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDSKLL 206 (278)
Q Consensus 172 ~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i 206 (278)
.+++.|-+++.-|....- ..+||.+|+.+|+.+
T Consensus 49 ~~~~~LvnL~r~RiDgal--SE~ytCy~l~kg~~~ 81 (110)
T PF15596_consen 49 AALDHLVNLMRYRIDGAL--SEEYTCYLLTKGKAL 81 (110)
T ss_pred HHHHHHHHHHhhhccccc--CcceeeeecccchHH
Confidence 578899999998987753 459999999998654
No 42
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=21.10 E-value=71 Score=21.02 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=11.0
Q ss_pred HHHHHHHHhHhCC
Q 023734 253 EEVLEVLRKRFSH 265 (278)
Q Consensus 253 ~dV~~eL~~R~~~ 265 (278)
.||+.|+.||...
T Consensus 18 ~DV~~E~~RR~~~ 30 (31)
T PF08518_consen 18 TDVYDELDRRETE 30 (31)
T ss_pred HHHHHHHHHhhcc
Confidence 6899999999754
No 43
>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....
Probab=21.04 E-value=1.3e+02 Score=23.27 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=24.3
Q ss_pred CCCeEEEEEEecCCCceEEEeecCHHHHHHHHh
Q 023734 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTIS 93 (278)
Q Consensus 61 ~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~ 93 (278)
.+|.||+|+ |..|.=-+...++...|.+.+.
T Consensus 19 ~~G~iPavi--YG~~~~~~~i~v~~~~l~k~~~ 49 (88)
T PF01386_consen 19 REGKIPAVI--YGKGKESIPISVDEKELEKLLR 49 (88)
T ss_dssp HTTEEEEEE--EESSEEEEEEEEEHHHHHHHHT
T ss_pred HcCCceEEE--ECCCCCCEEEEEeHHHHHHHHH
Confidence 479999999 5445445778899999999974
No 44
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=20.70 E-value=82 Score=29.75 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=49.8
Q ss_pred eecCHHHHHHHH-hcCcEEEEeCCCCcceeccCCCCCeeEEE-----------EEeccCCCCcEEEEEeeC--CCCCCCC
Q 023734 81 GFANRDALATTI-SSRKATFYSRSRSTLWTKGETSQNFINVQ-----------DIFLDCDRDSIIYLGKPD--GPTCHTG 146 (278)
Q Consensus 81 aymN~eAl~~Tl-~tg~~~y~SRSr~~lW~KGetSG~~q~v~-----------~i~~DCD~D~ll~~v~~~--g~aCHtg 146 (278)
|=+-..++..-| .+-+-|=|+=.+|.||+.|+-.|-|+..- -+-+|||..+|-|.+.+. |.|-...
T Consensus 95 Aplha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL 174 (242)
T KOG3953|consen 95 APLHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGL 174 (242)
T ss_pred CchhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCC
Confidence 333344444444 45677888999999999998888877763 367999999999998653 6664444
Q ss_pred Ccccccc
Q 023734 147 SETCYYT 153 (278)
Q Consensus 147 ~~SCF~~ 153 (278)
..-|-|.
T Consensus 175 ~~~~LYP 181 (242)
T KOG3953|consen 175 KDKKLYP 181 (242)
T ss_pred CCCccee
Confidence 4444443
No 45
>PF09137 Glucodextran_N: Glucodextranase, domain N; InterPro: IPR015220 Glucodextranase domain N, uniquely found in bacterial and archaeal glucoamylases and glucodextranases, adopts a structure consisting of 17 antiparallel beta-strands. These beta-strands are divided into two beta-sheets, and one of the beta-sheets is wrapped by an extended polypeptide, which appears to stabilise the domain. This domain, together with glycoside hydrolase domain A (IPR011613 from INTERPRO), is mainly involved with catalytic activity, hydrolysing alpha-1,6-glucosidic linkages of dextran to release beta-D-glucose from the non-reducing end via an inverting reaction mechanism []. ; PDB: 1UG9_A 1ULV_A 1LF6_B 1LF9_A.
Probab=20.36 E-value=1.4e+02 Score=28.44 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.8
Q ss_pred CCCCeeEEEEEeccCCCCcEEEEEee
Q 023734 113 TSQNFINVQDIFLDCDRDSIIYLGKP 138 (278)
Q Consensus 113 tSG~~q~v~~i~~DCD~D~ll~~v~~ 138 (278)
..|.++..++|..|=++|+||++|.-
T Consensus 93 ~~gry~i~k~i~tDP~rd~ll~~v~f 118 (269)
T PF09137_consen 93 KQGRYRITKEIFTDPDRDVLLMRVTF 118 (269)
T ss_dssp TTSSEEEEEEEEE-TTSSEEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCEEEEEEEE
Confidence 46899999999999999999999864
Done!