Query 023734
Match_columns 278
No_of_seqs 257 out of 1543
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zps_A PRA-CH, phosphoribosyl- 100.0 4.3E-56 1.5E-60 373.3 7.8 104 53-156 12-115 (138)
2 2a7w_A PRA-PH, phosphoribosyl- 100.0 1.4E-38 4.6E-43 261.3 9.9 102 173-277 5-107 (116)
3 1yvw_A PRA-PH, phosphoribosyl- 100.0 3E-37 1E-41 252.9 9.5 100 172-276 3-103 (115)
4 1y6x_A Phosphoribosyl-ATP pyro 100.0 1.5E-32 5E-37 217.8 7.2 86 171-259 7-93 (93)
5 1yxb_A PRA-PH, phosphoribosyl- 100.0 1.3E-32 4.5E-37 219.9 6.6 90 171-263 3-94 (98)
6 2yxh_A MAZG-related protein; T 98.9 2.3E-09 7.8E-14 87.1 8.2 83 174-264 2-92 (116)
7 2gta_A Hypothetical protein YP 97.6 0.00018 6E-09 58.0 7.6 60 204-263 28-96 (119)
8 2q5z_A MAZG, hypothetical prot 97.6 0.00019 6.5E-09 57.5 7.5 58 205-262 42-107 (114)
9 1vmg_A Hypothetical protein SS 97.6 0.00014 4.7E-09 57.2 6.3 54 204-258 38-91 (95)
10 2q73_A MAZG, hypothetical prot 97.5 0.00024 8.1E-09 55.6 6.9 54 205-258 22-83 (100)
11 2oie_A RS21-C6; helix, hydrola 97.5 0.00013 4.4E-09 57.7 5.2 55 204-258 39-105 (111)
12 2a3q_A Hypothetical protein; M 97.4 0.00019 6.5E-09 61.7 6.1 61 204-264 54-130 (170)
13 3obc_A Pyrophosphatase; dimeri 97.1 0.00076 2.6E-08 55.2 5.6 63 202-264 34-111 (118)
14 3cra_A Protein MAZG; tandem-re 96.5 0.0048 1.6E-07 56.7 7.1 87 173-264 5-99 (265)
15 2yf4_A MAZG-like nucleoside tr 95.5 0.024 8.1E-07 48.3 6.1 54 208-262 48-114 (154)
16 3cra_A Protein MAZG; tandem-re 93.8 0.16 5.6E-06 46.6 7.8 61 204-264 165-230 (265)
17 2rfp_A Putative NTP pyrophosph 93.7 0.087 3E-06 45.6 5.4 37 227-263 91-127 (171)
18 3nl9_A Putative NTP pyrophosph 63.6 2.8 9.7E-05 35.8 1.8 38 226-263 90-127 (171)
19 2p06_A Hypothetical protein AF 21.9 1.7E+02 0.0058 22.7 5.4 71 172-247 30-101 (114)
20 1b75_A Protein (50S ribosomal 21.3 52 0.0018 24.9 2.4 32 61-94 22-53 (94)
21 2i7u_A Four-alpha-helix bundle 21.2 56 0.0019 23.1 2.3 13 208-220 16-28 (62)
22 1ynx_A Replication factor-A pr 20.7 1E+02 0.0036 23.6 4.1 40 64-104 41-81 (114)
No 1
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=100.00 E-value=4.3e-56 Score=373.25 Aligned_cols=104 Identities=37% Similarity=0.710 Sum_probs=100.0
Q ss_pred hhhccccCCCCeEEEEEEecCCCceEEEeecCHHHHHHHHhcCcEEEEeCCCCcceeccCCCCCeeEEEEEeccCCCCcE
Q 023734 53 LLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDCDRDSI 132 (278)
Q Consensus 53 ~~~~i~~d~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~tg~~~y~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~l 132 (278)
+...++||++|||||||||+.||+|||+||||+|||++||+||++|||||||++||+|||||||+|+|++|++|||+|||
T Consensus 12 ~~~~~~~~~~GLipaIvQd~~tg~VLMlayMN~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~L 91 (138)
T 1zps_A 12 LNFRHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAV 91 (138)
T ss_dssp SCCCCCSSSCCCEEEEEEETTTCCEEEEEEECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEE
T ss_pred hhcccccCCCCcEEEEEEECCCCCEEEEEecCHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCCCccccccccc
Q 023734 133 IYLGKPDGPTCHTGSETCYYTSVL 156 (278)
Q Consensus 133 l~~v~~~g~aCHtg~~SCF~~~~~ 156 (278)
|++|+|.|||||||++||||+.+.
T Consensus 92 L~~V~q~G~aCHtG~~SCF~~~~~ 115 (138)
T 1zps_A 92 VLKVEQEGGACHTGYRSCFYRSID 115 (138)
T ss_dssp EEEEEESSCSSTTSBSSSCCEEEE
T ss_pred EEEEEecCCcccCCCCCcCccccc
Confidence 999999999999999999998763
No 2
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=100.00 E-value=1.4e-38 Score=261.29 Aligned_cols=102 Identities=29% Similarity=0.461 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCC
Q 023734 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVK 251 (278)
Q Consensus 173 ~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~ 251 (278)
+|.+|+++|.+|+.++|++ |||++||++| ++|+|||||||+|+++||+ ++|++++++|+||||||+||+|+++||+
T Consensus 5 ~L~~L~~~I~~Rk~~~pe~--SYT~~L~~kG~~kI~kKvgEEA~E~iiAak-~~d~~el~~E~ADLlYHllVlL~~~gv~ 81 (116)
T 2a7w_A 5 VLKNIADTLEARREAAPQS--SYVASLFHKGEDAILKKVAEEAAETLMASK-DKDKLHLVREVADLWFHTMVLLTYHGLR 81 (116)
T ss_dssp CHHHHHHHHHHGGGSCTTT--CHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCCC--cHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6999999999999999876 9999999998 9999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHHHHHhHhCCCCccccccCCCC
Q 023734 252 AEEVLEVLRKRFSHSGIEEKRSRVSE 277 (278)
Q Consensus 252 l~dV~~eL~~R~~~SGi~EK~~R~~~ 277 (278)
|+||++||.+|+++|||+||++|+..
T Consensus 82 l~dV~~eL~~R~~~sg~~eK~~R~~~ 107 (116)
T 2a7w_A 82 PEDVVMELHRREGISGLDEKASRKPT 107 (116)
T ss_dssp HHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhcccCcchhccCCCc
Confidence 99999999999999999999999753
No 3
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=100.00 E-value=3e-37 Score=252.94 Aligned_cols=100 Identities=30% Similarity=0.426 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCC
Q 023734 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDV 250 (278)
Q Consensus 172 ~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv 250 (278)
.+|.+|+++|.+|+.++|++ |||++||++| ++|+|||||||+|+++||+ ++|++++++|+||||||+||+|+++||
T Consensus 3 ~~L~~L~~~I~~Rk~~~pe~--SYT~~L~~kG~~kI~kKvgEEA~E~iiAak-~~d~~~l~~E~ADLlYHllVlL~~~gv 79 (115)
T 1yvw_A 3 NAFKLLYKTIEERKGSPLPE--SYTNYLFSKGEDKILKKIGEECAEVIIACK-NNDKEEVVKEMVDVFYHCFVLLAEKNI 79 (115)
T ss_dssp -CHHHHHHHHHHHHHSCCTT--SHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHcCCCCC--cHHHHHHHCcHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 36999999999999999876 9999999998 9999999999999999986 789999999999999999999999999
Q ss_pred CHHHHHHHHHhHhCCCCccccccCCC
Q 023734 251 KAEEVLEVLRKRFSHSGIEEKRSRVS 276 (278)
Q Consensus 251 ~l~dV~~eL~~R~~~SGi~EK~~R~~ 276 (278)
+|+||++||.+|++ ||+||++|+.
T Consensus 80 ~l~dV~~eL~~R~~--gi~eK~~R~~ 103 (115)
T 1yvw_A 80 ALEDVMREVKERNG--KLSRVGDRRE 103 (115)
T ss_dssp CHHHHHHHHHHHHH--HC--------
T ss_pred CHHHHHHHHHHHhC--CchhhccCCc
Confidence 99999999999998 9999999975
No 4
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=99.97 E-value=1.5e-32 Score=217.83 Aligned_cols=86 Identities=27% Similarity=0.327 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCC
Q 023734 171 MTTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKD 249 (278)
Q Consensus 171 ~~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~g 249 (278)
+.+|.+|+++|.+|+.++|++ |||++||++| ++|+|||||||+|+++||+ ++|++++++|+||||||+||+|+++|
T Consensus 7 ~~~l~~L~~~I~~Rk~~~pe~--SYT~~L~~~G~~ki~kKvgEEA~E~iiAak-~~~~~~l~~E~ADLlYHllVlL~~~g 83 (93)
T 1y6x_A 7 VKTFEDLFAELGDRARTRPAD--STTVAALDGGVHALGKKLLEEAGEVWLAAE-HESNDALAEEISQLLYWTQVLMISRG 83 (93)
T ss_dssp CCSHHHHHHHHHHHHHHCCTT--CHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCCCC--cHHHHHHHCcHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999876 9999999999 9999999999999999986 78999999999999999999999999
Q ss_pred CCHHHHHHHH
Q 023734 250 VKAEEVLEVL 259 (278)
Q Consensus 250 v~l~dV~~eL 259 (278)
|+|+||++||
T Consensus 84 v~l~dV~~eL 93 (93)
T 1y6x_A 84 LSLDDVYRKL 93 (93)
T ss_dssp CCHHHHHTTC
T ss_pred CCHHHHHhhC
Confidence 9999999876
No 5
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.60A {Streptomyces coelicolor} SCOP: a.204.1.4
Probab=99.97 E-value=1.3e-32 Score=219.91 Aligned_cols=90 Identities=23% Similarity=0.337 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHhc-CCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhC
Q 023734 171 MTTLYSLESTISQRKAA-SKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALK 248 (278)
Q Consensus 171 ~~~L~~L~~~I~~Rk~~-~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~ 248 (278)
+.+|.+|+++|.+|+.+ +|++ |||++||++| ++|+|||||||+|+++||+ ++|++++++|+||||||+||+|+++
T Consensus 3 ~~~L~~L~~~I~~Rk~~~~pe~--SYT~~L~~kG~~kI~kKvgEEA~E~iiAak-~~d~~~l~~E~ADLlYHllVlL~~~ 79 (98)
T 1yxb_A 3 KKTFEELFTELQHKAANGDPAT--SRTAELVDKGVHAIGKKVVEEAAEVWMAAE-YEGKDAAAEEISQLLYHVQVMMVAR 79 (98)
T ss_dssp -CCHHHHHHHHHHHTCC----C--CSSCCHHHHCHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhCCCCCC--cHHHHHHHCcHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999 8866 9999999998 9999999999999999986 6899999999999999999999999
Q ss_pred CCCHHHHHHHHHhHh
Q 023734 249 DVKAEEVLEVLRKRF 263 (278)
Q Consensus 249 gv~l~dV~~eL~~R~ 263 (278)
||+|+||++||+.-|
T Consensus 80 gv~l~dV~~eL~~~~ 94 (98)
T 1yxb_A 80 GISLDDVYAHLLEHH 94 (98)
T ss_dssp TCCHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998765
No 6
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=98.94 E-value=2.3e-09 Score=87.09 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhC----C
Q 023734 174 LYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALK----D 249 (278)
Q Consensus 174 L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~----g 249 (278)
|.+|..+| -|... .-+|+. ++....++.||.||+.|++.|.. +++++++..|.+|||||++.+.... |
T Consensus 2 ~~~l~~i~-lR~~~----G~~W~~--~qt~~~l~~~l~EE~~El~eai~-~~d~~~l~eElGDlLf~vv~la~~~~~~~~ 73 (116)
T 2yxh_A 2 VERLLEII-ERSLR----KCPWLE--KQSIETLLEALASEIEEVAEAVK-KNDLANLEEEIGDMIYDALLVAAVAQRDYG 73 (116)
T ss_dssp HHHHHHHH-HHHHH----HCHHHH--TCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-ccCCC----CCCCCc--ccCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhHcCC
Confidence 57888999 77632 236766 33346788999999999999875 5689999999999999999999887 9
Q ss_pred CCHHHHHHH----HHhHhC
Q 023734 250 VKAEEVLEV----LRKRFS 264 (278)
Q Consensus 250 v~l~dV~~e----L~~R~~ 264 (278)
+++++|++. +.+||.
T Consensus 74 ~d~e~al~~~~~K~~rR~~ 92 (116)
T 2yxh_A 74 IDLESAIQKVVEKISHRKP 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHHCG
T ss_pred CCHHHHHHHHHHHHHHHhH
Confidence 999999998 999985
No 7
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural genomics, PSI, protein structure initiative; 2.90A {Bacillus subtilis} SCOP: a.204.1.2
Probab=97.59 E-value=0.00018 Score=58.05 Aligned_cols=60 Identities=27% Similarity=0.452 Sum_probs=48.3
Q ss_pred hhHHHHHhHhHHHHHHhhhc---------cCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHh
Q 023734 204 KLLCSKIREEADELCRTLEE---------NEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~---------~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~ 263 (278)
..++.||.||+.|+..|..+ .+.++.+..|.|||||.++.+....||++++++..=..++
T Consensus 28 ~~~~~kL~EE~gEl~eai~~~~~~~~~~~~~~~~~l~eELGDvLf~lv~lA~~l~idle~al~~~~~K~ 96 (119)
T 2gta_A 28 LAMMARLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANSLDISLEEAHDRVMHKF 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCCSSCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45678999999999887542 1123689999999999999999999999999887644433
No 8
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Probab=97.57 E-value=0.00019 Score=57.51 Aligned_cols=58 Identities=28% Similarity=0.322 Sum_probs=47.8
Q ss_pred hHHHHHhHhHHHHHHhhhcc--------CCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhH
Q 023734 205 LLCSKIREEADELCRTLEEN--------EDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKR 262 (278)
Q Consensus 205 ~i~kKIgEEA~E~iiAa~~~--------~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R 262 (278)
.+..||.||+.|+..+..+. ++++++..|.|||||.++.+....||+++++++.-.++
T Consensus 42 ~~~~kL~eE~gEl~e~i~~~~~~~~~~~~~~~~l~eELgDvL~~l~~LA~~lgiDle~al~~k~~K 107 (114)
T 2q5z_A 42 HYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTRELKEVL 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45689999999998876432 13678999999999999999999999999988774443
No 9
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide pyrophosphohydrolase, structural G JCSG, protein structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus solfataricus} SCOP: a.204.1.2
Probab=97.55 E-value=0.00014 Score=57.21 Aligned_cols=54 Identities=24% Similarity=0.310 Sum_probs=47.2
Q ss_pred hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023734 204 KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV 258 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e 258 (278)
..+..|+.||..|+..|.. .++++++..|.|||||.++.+....||++++.++.
T Consensus 38 ~~~~~kl~EE~gEl~eai~-~~~~~~i~eELgDvLf~lv~lA~~lgiD~e~al~~ 91 (95)
T 1vmg_A 38 YATFTWLVEEVGELAEALL-SNNLDSIQEELADVIAWTVSIANLEGIDIEEALKK 91 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4567899999999988765 35788999999999999999999999999998753
No 10
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP} PDB: 2q9l_A
Probab=97.49 E-value=0.00024 Score=55.58 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=45.2
Q ss_pred hHHHHHhHhHHHHHHhhhccC--------CchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023734 205 LLCSKIREEADELCRTLEENE--------DNSRTASEMADVLYHAMVLLALKDVKAEEVLEV 258 (278)
Q Consensus 205 ~i~kKIgEEA~E~iiAa~~~~--------d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e 258 (278)
..+.||.||+.|+..+..... +++++..|.||+||.++.+....||+++++++.
T Consensus 22 ~~~~kL~eE~gEl~e~~~~~~~~~~~~~~~~~~i~eELgDvL~~l~~lA~~lgiDle~al~~ 83 (100)
T 2q73_A 22 HYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHEL 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCCGGGCTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 456799999999988754321 247899999999999999999999999998765
No 11
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=97.47 E-value=0.00013 Score=57.69 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=45.8
Q ss_pred hhHHHHHhHhHHHHHHhhhc------------cCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023734 204 KLLCSKIREEADELCRTLEE------------NEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV 258 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~------------~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e 258 (278)
..++.||.||+.|+..+... .++++++..|.||+||.++.+....||++++++..
T Consensus 39 ~~~~~~L~eE~gEl~e~~~~~~~~~~~~~~~~~~~~~~l~eElgDvL~~l~~lA~~lgiDle~al~~ 105 (111)
T 2oie_A 39 RNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQAVIS 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45678999999999877541 12467899999999999999999999999998753
No 12
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural genomics, PROT structure initiative, PSI; 2.32A {Mus musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Probab=97.43 E-value=0.00019 Score=61.73 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=50.8
Q ss_pred hhHHHHHhHhHHHHHHhhhcc------------CCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH----HHhHhC
Q 023734 204 KLLCSKIREEADELCRTLEEN------------EDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV----LRKRFS 264 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~~~------------~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e----L~~R~~ 264 (278)
..++.||.||+.|++.+.... ++++++..|.+||||.++.+....||++++++.. +.+||.
T Consensus 54 ~~l~~~L~EEvgEL~eai~~~~~~~~g~~~~~~~~~e~l~eELGDVL~~lv~LA~~lgIDleeAl~~k~~K~~~Ryp 130 (170)
T 2a3q_A 54 RNLLLALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQAVISKMDTNRQRYP 130 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSSCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc
Confidence 456789999999998876421 2567899999999999999999999999997754 777885
No 13
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus} SCOP: a.204.1.0
Probab=97.06 E-value=0.00076 Score=55.18 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=50.4
Q ss_pred CChhHHHHHhHhHHHHHHhhhc-c----------CCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH----HHhHhC
Q 023734 202 DSKLLCSKIREEADELCRTLEE-N----------EDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV----LRKRFS 264 (278)
Q Consensus 202 ~g~~i~kKIgEEA~E~iiAa~~-~----------~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e----L~~R~~ 264 (278)
.+..++-.+.+||.|++.+... . ++++++..|.||+|+.++.+....||++++++.. +++|+-
T Consensus 34 ~Pknlal~L~~EaGELae~fqwg~~~~~~~~~~~~~~~~l~eELADVL~Yl~~LA~~lgIDLeea~~~Km~Kn~~RYP 111 (118)
T 3obc_A 34 TPKNLAVSISIEVAELLEIFQWTRSSDEEFEVLERRKGEVEEEIADVLIYLLFLCDVAEINPIEAVKRKMEKNERKYP 111 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3455678999999999987653 1 2357899999999999999999999999997654 666654
No 14
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=96.52 E-value=0.0048 Score=56.72 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchhhhhhcCChhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHH---HHHhCC
Q 023734 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMV---LLALKD 249 (278)
Q Consensus 173 ~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllV---lL~~~g 249 (278)
-|.+|..++. |...|..| -.|... +.-..|..=+.||+.|++-|.. ++|.+++..|..|||++++. +....|
T Consensus 5 ~~~~L~~im~-~LR~p~~g-CPWD~~--QT~~Sl~~yl~eE~~Ev~daI~-~~d~~~l~eELGDvLlqVvf~a~ia~e~g 79 (265)
T 3cra_A 5 QIDRLLTIMQ-RLRDPENG-CPWDKE--QTFATIAPYTLEETYEVLDAIA-REDFDDLRGELGDLLFQVVFYAQMAQEEG 79 (265)
T ss_dssp HHHHHHHHHH-HHHCTTTC-CSSGGG--CCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-HHhCCCCC-CCCCcc--cCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4677777776 45543211 234322 1114678899999999999975 67999999999999986663 344455
Q ss_pred -CCHHHHHHH----HHhHhC
Q 023734 250 -VKAEEVLEV----LRKRFS 264 (278)
Q Consensus 250 -v~l~dV~~e----L~~R~~ 264 (278)
++++||++. |.+||-
T Consensus 80 ~F~~~dV~~~~~~KlirRhP 99 (265)
T 3cra_A 80 RFDFNDICAAISDKLERRHP 99 (265)
T ss_dssp SCCHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHhhCC
Confidence 999997764 778885
No 15
>2yf4_A MAZG-like nucleoside triphosphate pyrophosphohydr; hydrolase, dimeric dutpase; HET: GOL; 1.70A {Deinococcus radiodurans} PDB: 2yf3_A* 2yeu_A* 2yf9_A 2yfc_A* 2yfd_A*
Probab=95.45 E-value=0.024 Score=48.31 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=46.2
Q ss_pred HHHhHhHHHHHH-------------hhhccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhH
Q 023734 208 SKIREEADELCR-------------TLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKR 262 (278)
Q Consensus 208 kKIgEEA~E~ii-------------Aa~~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R 262 (278)
.=+.||..|+.. |. .+.|.-+++.+.+||+|-++=.+...||.++.|++|.++=
T Consensus 48 ~li~EEl~E~~e~~~~~~~~~~~~~A~-~~~dlve~aDAL~DllYv~~G~~~~~Gid~~~vf~eVh~S 114 (154)
T 2yf4_A 48 TLLDEESAEVRAEIDHLLARQAAGEAL-SAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVHRA 114 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC-CGGGGHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcc-ccccHHHHHHHHhChhhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 457788889887 43 3567889999999999999999999999999999998764
No 16
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=93.82 E-value=0.16 Score=46.56 Aligned_cols=61 Identities=28% Similarity=0.378 Sum_probs=49.9
Q ss_pred hhHHHHHhHhHHHHHHhhh-ccCCchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHH----HHhHhC
Q 023734 204 KLLCSKIREEADELCRTLE-ENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEV----LRKRFS 264 (278)
Q Consensus 204 ~~i~kKIgEEA~E~iiAa~-~~~d~~eli~EaADLlYHllVlL~~~gv~l~dV~~e----L~~R~~ 264 (278)
.....||.||..|+..|.. ..++++.+..|.+||||-+.-+-...||++++-++. +.+||.
T Consensus 165 ~~v~~Kl~EEl~El~eal~~~~~~~~~ieeElGDlLFalVnlAR~~gIDpE~ALr~an~KF~~Rf~ 230 (265)
T 3cra_A 165 GPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFR 230 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999987652 235788899999999999999999999999986665 666664
No 17
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=93.68 E-value=0.087 Score=45.61 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=33.2
Q ss_pred chhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHh
Q 023734 227 NSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 227 ~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~ 263 (278)
--+++.+.+|++|-++=.+...||+++.++++.++=.
T Consensus 91 lve~aDaL~Dl~Yv~~G~~~~~Gid~~~~~~eVh~SN 127 (171)
T 2rfp_A 91 LVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQAN 127 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 4678899999999999999999999999999988654
No 18
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=63.61 E-value=2.8 Score=35.79 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.9
Q ss_pred CchhhHhhHHHHHHHHHHHHHhCCCCHHHHHHHHHhHh
Q 023734 226 DNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263 (278)
Q Consensus 226 d~~eli~EaADLlYHllVlL~~~gv~l~dV~~eL~~R~ 263 (278)
+-.+++.+.+|++|-++=.+...|+.++.++++.++=.
T Consensus 90 d~ve~~DaL~D~~yv~~g~~~~~g~~~~~~~~eV~~sN 127 (171)
T 3nl9_A 90 RLVGQGDALTDALYFIMGSFVEAGLEPGPLFEIVQQAN 127 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 34567888999999999999999999999999987653
No 19
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=21.88 E-value=1.7e+02 Score=22.70 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCchhhhhhcCC-hhHHHHHhHhHHHHHHhhhccCCchhhHhhHHHHHHHHHHHHHh
Q 023734 172 TTLYSLESTISQRKAASKNGKPSWTKRLLLDS-KLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLAL 247 (278)
Q Consensus 172 ~~L~~L~~~I~~Rk~~~~e~~~SYT~~Ll~~g-~~i~kKIgEEA~E~iiAa~~~~d~~eli~EaADLlYHllVlL~~ 247 (278)
.||.++-+.--.|-..|.. -..--|+=. .+++.++-||-.|+-.|.. .+|-+.+..|.-|+--++|.++-.
T Consensus 30 kflremhakymkrvsrpgn----tprpwfdfseerllsrlfeemdelreave-kedwenlrdelldvanfcmylwgk 101 (114)
T 2p06_A 30 KFLREMHAKYMKRVSRPGN----TPRPWFDFSEERLLSRLFEEMDELREAVE-KEDWENLRDELLDVANFCMYLWGK 101 (114)
T ss_dssp HHHHHHHHHHHHHHTSTTC----CSCHHHHSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCC----CCCCcccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566665555555544321 112234433 6788999999999998876 478899999999998888887654
No 20
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=21.31 E-value=52 Score=24.86 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=22.0
Q ss_pred CCCeEEEEEEecCCCceEEEeecCHHHHHHHHhc
Q 023734 61 NKGLAVAIAQNVDTGAILMQGFANRDALATTISS 94 (278)
Q Consensus 61 ~~GLiPaivQd~~tg~VLmlaymN~eAl~~Tl~t 94 (278)
.+|.||+|| |..|.==....++...|.+.+.+
T Consensus 22 r~G~vPaVv--YG~~~e~~~i~v~~~~~~~~l~~ 53 (94)
T 1b75_A 22 AANKFPAII--YGGKEAPLAIELDHDKVMNMQAK 53 (94)
T ss_dssp TTTBCCEEE--ECSSSCCEEECCBSHHHHHHHTT
T ss_pred HCCCceEEE--ECCCCCCEEEEECHHHHHHHHhc
Confidence 579999999 54442223445788888888754
No 21
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=21.21 E-value=56 Score=23.07 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=8.4
Q ss_pred HHHhHhHHHHHHh
Q 023734 208 SKIREEADELCRT 220 (278)
Q Consensus 208 kKIgEEA~E~iiA 220 (278)
||+.|||..+...
T Consensus 16 kklaeeaaklleg 28 (62)
T 2i7u_A 16 KKLAEEAAKLLEG 28 (62)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 5677777766553
No 22
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.71 E-value=1e+02 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.3
Q ss_pred eEEEEEEecCCCceEEEeecCH-HHHHHHHhcCcEEEEeCCC
Q 023734 64 LAVAIAQNVDTGAILMQGFANR-DALATTISSRKATFYSRSR 104 (278)
Q Consensus 64 LiPaivQd~~tg~VLmlaymN~-eAl~~Tl~tg~~~y~SRSr 104 (278)
++.+++.| .+|++-...|-+. +.+...|+.|++.|.|+-+
T Consensus 41 ~~~~~L~D-e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~~ 81 (114)
T 1ynx_A 41 LFNVNFLD-TSGEIRATAFNDFATKFNEILQEGKVYYVSKAK 81 (114)
T ss_dssp EEEEEEEE-TTEEEEEEECHHHHHHHHHHSCSSSEEEEESCE
T ss_pred EEEEEEEC-CCCeEEEEECHHHHHHHHhhcccCcEEEECCcE
Confidence 78899999 5888888888764 5577889999999999854
Done!