RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023734
(278 letters)
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis;
1.70A {Methanothermobacterthermautotrophicus} SCOP:
b.168.1.1
Length = 138
Score = 142 bits (361), Expect = 5e-43
Identities = 37/100 (37%), Positives = 63/100 (63%)
Query: 56 SVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQ 115
+ + L +A+AQ+ +TG +LM + NR+AL T+ + A ++S SR LW KGE+S
Sbjct: 15 RHNINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSG 74
Query: 116 NFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
+ V+D+ +DCD D+++ + +G CHTG +C+Y S+
Sbjct: 75 HVQRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 114
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics,
PSI, protein structure initiative; 2.80A
{Chromobacterium violaceum} SCOP: a.204.1.4
Length = 116
Score = 102 bits (255), Expect = 1e-27
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 171 MT--TLYSLESTISQRKAASKNGKPSWTKRLLLD-SKLLCSKIREEADELCRTLEENEDN 227
MT L ++ T+ R+ A+ S+ L + K+ EEA E +++D
Sbjct: 1 MTPDVLKNIADTLEARREAAPQS--SYVASLFHKGEDAILKKVAEEAAETLMA-SKDKDK 57
Query: 228 SRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKRFSHSGIEEKRSR 274
E+AD+ +H MVLL ++ E+V+ L +R SG++EK SR
Sbjct: 58 LHLVREVADLWFHTMVLLTYHGLRPEDVVMELHRREGISGLDEKASR 104
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine
biosynthesis, structural genomics, PSI, protein
structure initiative; 2.60A {Bacillus cereus} SCOP:
a.204.1.4
Length = 115
Score = 96.2 bits (240), Expect = 2e-25
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 173 TLYSLESTISQRKAASKNGKPSWTKRLLLD-SKLLCSKIREEADELCRTLEENEDNSRTA 231
L TI +RK + S+T L + KI EE E+ +N D
Sbjct: 4 AFKLLYKTIEERKGSPLPE--SYTNYLFSKGEDKILKKIGEECAEVI-IACKNNDKEEVV 60
Query: 232 SEMADVLYHAMVLLALKDVKAEEVLEVLRKRFSH-SGIEEKRSR 274
EM DV YH VLLA K++ E+V+ +++R S + ++R
Sbjct: 61 KEMVDVFYHCFVLLAEKNIALEDVMREVKERNGKLSRVGDRREI 104
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine,
hydrolase, ST genomics, PSI, protein structure
initiative; 1.25A {Mycobacterium tuberculosis} SCOP:
a.204.1.4 PDB: 3c90_X
Length = 93
Score = 75.0 bits (185), Expect = 1e-17
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 170 AMTTLYSLESTISQRKAASKNGKPSWTKRLLLD-SKLLCSKIREEADELCRTLE-ENEDN 227
A+ T L + + R S T L L K+ EEA E+ L E+E N
Sbjct: 6 AVKTFEDLFAELGDRARTRPAD--STTVAALDGGVHALGKKLLEEAGEVW--LAAEHESN 61
Query: 228 SRTASEMADVLYHAMVLLALKDVKAEEVLEVL 259
A E++ +LY VL+ + + ++V L
Sbjct: 62 DALAEEISQLLYWTQVLMISRGLSLDDVYRKL 93
>1yxb_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics,
PSI, protein structure initiative; 2.60A {Streptomyces
coelicolor} SCOP: a.204.1.4
Length = 98
Score = 72.4 bits (178), Expect = 2e-16
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 169 LAMTTLYSLESTISQRKAASKNGKP--SWTKRLL---LDSKLLCSKIREEADELCRTLE- 222
++ T L + + + NG P S T L+ + + + K+ EEA E+ +
Sbjct: 1 MSKKTFEELFTELQHKA---ANGDPATSRTAELVDKGVHA--IGKKVVEEAAEVW--MAA 53
Query: 223 ENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVLRKR 262
E E A E++ +LYH V++ + + ++V L +
Sbjct: 54 EYEGKDAAAEEISQLLYHVQVMMVARGISLDDVYAHLLEH 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 5e-08
Identities = 50/325 (15%), Positives = 91/325 (28%), Gaps = 93/325 (28%)
Query: 1 MAVSYSQCVQSLKVSLTGSDRCRD-NDMKRNCLVFASSTESN---SNPVLQSKVDRLLDS 56
Y + + + + C+D DM ++ L S E + + S RL +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 57 VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTIS------SRKATFYSRSRSTLWTK 110
+ +K + + V+ +++ N L + I S Y R L+
Sbjct: 71 LL--SKQ-EEMVQKFVEE---VLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 111 GET--------SQNFINVQDIFLDCDRDSIIYL------GKPDGPTCHTGSETCYYTSVL 156
+ Q ++ ++ L+ + + GK + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----------------TWV 166
Query: 157 --DALKDQPVQGNN------------------LAM--TTLYSLESTISQRKAASKNGK-- 192
D VQ L M LY ++ + R S N K
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 193 PSWTKRLLLDSKLLCSKIREEA----DEL------------CRTLEENEDNSRTASEMAD 236
+ L +LL SK E + C+ L T A
Sbjct: 227 IHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 237 VLYHAMVLLALKDVKAEEVLEVLRK 261
H + + +EV +L K
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLK 309
Score = 33.3 bits (75), Expect = 0.11
Identities = 50/329 (15%), Positives = 97/329 (29%), Gaps = 91/329 (27%)
Query: 7 QCVQSLKVSLTGSDRCRDNDMKRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDN----- 61
C K+ LT + + + S + +S + +V LL +K+ +
Sbjct: 265 SC----KILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQD 317
Query: 62 ------KG--LAVA-IAQNVDTGAILMQGFA--NRDALATTISS----------RK---- 96
++ IA+++ G + N D L T I S RK
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 97 -ATFYSRSR------STLWTKGETSQNFINVQDIFLDCDRDSIIYLGKPDGPTCHTGSET 149
+ F + S +W S +V + + S++ T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKS----DVMVVVNKLHKYSLV--------EKQPKEST 425
Query: 150 CYYTSVLDALKDQPVQGNNL--AMTTLYSLESTISQR-------------------KAAS 188
S+ LK + L ++ Y++ T K
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 189 KNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADV-LYHAMVLLAL 247
+ + + + LD + L KIR ++ + + + + Y +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-------GSILNTLQQLKFYKPYI--CD 536
Query: 248 KDVKAEEVLEVLRKRFSHSGIEEK--RSR 274
D K E ++ + F IEE S+
Sbjct: 537 NDPKYERLVNAI-LDFLPK-IEENLICSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 9e-05
Identities = 66/374 (17%), Positives = 109/374 (29%), Gaps = 146/374 (39%)
Query: 6 SQCVQSLKVSLTGSDRC--RDNDMKRNCLVFASSTESNSNPVLQSK-------------- 49
Q Q L + LT + C ND+ + L A + N ++++K
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDI--HALA-AKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 50 --VDRLLDSVKWDNKGLAVAIAQNVDTG-AILM-----QGFAN------RDALATTISSR 95
D+ +S A+ + V G A L+ QG + RD L T
Sbjct: 135 RPFDKKSNS----------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-LYQTYHVL 183
Query: 96 KATFYSRSRSTLW----TKGETSQNFINVQDI--FLDCDRDSIIYLGKPD---------- 139
S TL T + + F +I +L+ + + PD
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSN-----TPDKDYLLSIPIS 237
Query: 140 GP------------TCHT-------------GSETCY---YTSVL-------DALKDQPV 164
P T G+ T+V ++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 165 QGNNLAMTTLY-------------SLESTISQRKAASKNGKPSWTKRLLLDSKLLCSKIR 211
+ A+T L+ SL +I + + G PS +L S L +++
Sbjct: 298 K----AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP---MLSISNLTQEQVQ 350
Query: 212 EEADELCRTLEENED------NSRT--------ASEMADVLYHAMVLLALKDVKAEEVLE 257
+ ++ L + N S LY + L L+ KA L+
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-----LYG--LNLTLRKAKAPSGLD 403
Query: 258 VLRKRFSHSGIEEK 271
R FS E K
Sbjct: 404 QSRIPFS----ERK 413
Score = 40.8 bits (95), Expect = 5e-04
Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 47/183 (25%)
Query: 99 FYSRSRS--TLWTKGE--TSQNF-INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYT 153
Y S++ +W + + + ++ DI ++ + I+ G G +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 154 SVLDA-LKDQPVQGNNLAMTTLYS-------LEST-ISQRKAASKNGKPSWTKRLLLDSK 204
+++D LK + + +T Y+ L +T +Q P L L K
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ---------P----ALTLMEK 1741
Query: 205 LLCSKIREEADELCRTLEENEDNSRTA--S--EMADVLYHAMVLLALKDV-KAEEVLEVL 259
++ + ++ A S E Y A+ LA DV E ++EV+
Sbjct: 1742 AAFEDLKSKGLI--------PADATFAGHSLGE-----YAALASLA--DVMSIESLVEVV 1786
Query: 260 RKR 262
R
Sbjct: 1787 FYR 1789
Score = 36.2 bits (83), Expect = 0.013
Identities = 46/289 (15%), Positives = 82/289 (28%), Gaps = 115/289 (39%)
Query: 62 KGL--AVAIAQNVDTGAILMQGFANRDALATTISSRKATFY--SRS-----RSTLWTK-- 110
+GL AVAIA+ D+ + F A T+ F+ R ++L
Sbjct: 275 QGLVTAVAIAE-TDSW----ESFFVSVRKAITVL-----FFIGVRCYEAYPNTSLPPSIL 324
Query: 111 ------GETS---------------QNFINVQDIFLDCDRDSIIYLGKPDGPTCH--TGS 147
E Q+++N + L + + + +G +G
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ--VEISLVNGAKNLVVSG- 381
Query: 148 ETCYYTSVLDALKDQPVQGNNLAMTTLYSLESTISQRKAASKNG-----------KPSWT 196
P Q +LY L T+ RKA + +G K ++
Sbjct: 382 ---------------PPQ-------SLYGLNLTL--RKAKAPSGLDQSRIPFSERKLKFS 417
Query: 197 KRLL-----LDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYH----------- 240
R L S LL A +L + S A ++ +Y
Sbjct: 418 NRFLPVASPFHSHLL-----VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 241 AMVLLALKDVKAEEVL---EVLRKRFSH---------SGIEEKRSRVSE 277
+ + D + + + +H SG+ R +
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 28.9 bits (64), Expect = 2.3
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 22/99 (22%)
Query: 3 VSYSQCVQSLKV----SLTGSD-RCRDNDMKRN---CLV-----FASSTESNSNPVL--- 46
VS++ + +++ + GSD R + C++ + ++T+ + +L
Sbjct: 448 VSFNA--KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 47 ---QSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGF 82
S + L K D G+ V +A +D GF
Sbjct: 506 PGGASGLGVLTHRNK-DGTGVRVIVAGTLDINPDDDYGF 543
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 36.3 bits (85), Expect = 0.007
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 26/100 (26%)
Query: 183 QRKAAS-----KNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENE-DNSRTASEMAD 236
Q++ A+ P K+ EE DE+ + D ++ EM D
Sbjct: 151 QKRCANVGFDWTTLGPVV------------DKVYEEIDEVMYEARQAVVDQAKLEEEMGD 198
Query: 237 VLYHAMVLLA-LKDVKAEEVLEV----LRKRFSHSGIEEK 271
+L+ A V LA KAE L+ +RF +E
Sbjct: 199 LLF-ATVNLARHLGTKAEIALQKANEKFERRFRE--VERI 235
>2gta_A Hypothetical protein YPJD; pyrophosphatase, NESG, structural
genomics, PSI, protein structure initiative; 2.90A
{Bacillus subtilis} SCOP: a.204.1.2
Length = 119
Score = 34.5 bits (79), Expect = 0.009
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 202 DSKLLCSKIREEADELCR---------TLEENEDNSRTASEMADVLYHAMVLLALKDVKA 252
+ +++ EE EL R + ED+ E+ DVL+ + L D+
Sbjct: 26 SPLAMMARLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANSLDISL 85
Query: 253 EEVLEV----LRKRFSHSGIEEKRSRVSEN 278
EE + R ++ ++ +
Sbjct: 86 EEAHDRVMHKFNTRDKDRWTRKEEGKLEHH 115
>1vmg_A Hypothetical protein SSO3215; 13816655, MAZG nucleotide
pyrophosphohydrolase, structural G JCSG, protein
structure initiative, PSI; HET: MSE; 1.46A {Sulfolobus
solfataricus} SCOP: a.204.1.2
Length = 95
Score = 34.0 bits (78), Expect = 0.010
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 209 KIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLE 257
+ EE EL L N + E+ADV+ + + L+ + EE L+
Sbjct: 43 WLVEEVGELAEALLSN-NLDSIQEELADVIAWTVSIANLEGIDIEEALK 90
>2q5z_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 2.30A {Vibrio SP}
Length = 114
Score = 33.6 bits (77), Expect = 0.018
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 183 QRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTL--------EENEDNSRTASEM 234
Q + P ++ K+ EE EL ++ +E A E+
Sbjct: 27 QSHIKEFDYAPEQSEHYFF-------KLIEEVGELSESIRKGKSGQPTLDELKGSVAEEL 79
Query: 235 ADVLYHAMVLLALKDVKAEEV----LEVLRKRF 263
DVLY+ L + V E+ + + ++
Sbjct: 80 YDVLYYVCALANIHGVNLEKTRELKEVLNKVKY 112
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 31.9 bits (73), Expect = 0.25
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 43 NPVLQSKVDRLLDSVKW-DNKGLAVAIAQNVDTGAIL 78
NP +Q + + KG VA+ TG IL
Sbjct: 131 NPRIQQAGWDAMQQGCYGPCKGAVVAL--EPSTGKIL 165
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics,
PSI-biology, protein STRU initiative; 1.90A {Bacillus
halodurans}
Length = 211
Score = 29.4 bits (67), Expect = 0.92
Identities = 10/72 (13%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 27 MKRNCLVFASSTESNSNPVLQSKVDR-----------LLDSVKWDNKGLAVAIAQNVDTG 75
+ + +FAS + +N ++ + LL + K K + +
Sbjct: 1 VMKRVAIFASGSGTN----AEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVC 56
Query: 76 AILMQGFANRDA 87
A+ + + +++A
Sbjct: 57 ALDPKTYPSKEA 68
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance,
cell WALL, transmembrane; 2.4A {Streptococcus
pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1
PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B*
2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A*
2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Length = 702
Score = 29.3 bits (66), Expect = 1.6
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 46 LQSKVDRLLDSVKWDNKGLAV-AIAQNVDTGAILMQGFANR 85
LQS ++ +D+ + KG + A + TG IL R
Sbjct: 221 LQSFMETQMDAFQEKVKGKYMTATLVSAKTGEIL--ATTQR 259
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 29.2 bits (66), Expect = 1.6
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 21/67 (31%)
Query: 66 VAIAQNVDTGAILMQGFANRDALATTISSRKATFYSR------SR--STLWTKGETSQNF 117
V AQ + Q +ALA Y R R L +F
Sbjct: 382 VQKAQTKE------QADFALEALAKAT-------YERLFRWLVLRLNRALDRSPRQGASF 428
Query: 118 INVQDIF 124
+ + DI
Sbjct: 429 LGILDIA 435
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme
antibiotic resistance, cell shape, peptidoglycan; 2.18A
{Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Length = 680
Score = 29.0 bits (65), Expect = 2.0
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
Query: 46 LQSKVDRLL----------DSVKWDNKGLAVAIAQNVDTGAIL-MQGF 82
Q VD LL K+ AVA+ N TGA+L M G
Sbjct: 316 FQDSVDALLKSYFNSELGNGGAKYSEGVYAVAL--NPQTGAVLSMSGL 361
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 28.6 bits (63), Expect = 2.4
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 193 PSWTKRLLLDSKLLCSKIREEADELCRTLEEN----EDNSRTASEMADVLYHAMVLLALK 248
P+W +L L + L + EA + L + E L + + L ++
Sbjct: 209 PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ 268
Query: 249 DVKAEEVLEVLRK 261
+ E++ L K
Sbjct: 269 GLDTEDLTNQLVK 281
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 28.8 bits (65), Expect = 2.5
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 23/92 (25%)
Query: 41 NSNPVLQSKVDRLLDSVKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFY 100
+ + + S R++ + KG + + V+ Q RDALA T+ Y
Sbjct: 378 DQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVE------QANNARDALAKTV-------Y 424
Query: 101 SR------SR--STLWTKGETSQNFINVQDIF 124
S +R + TS FI V DI
Sbjct: 425 SHLFDHVVNRVNQCFPFE--TSSYFIGVLDIA 454
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 28.5 bits (64), Expect = 2.6
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 209 KIREEADELCRTLEENEDNSRT----ASEMADVLYHAMV-LLALKDVKAEEVLEVLRK 261
++ + A EL L+ +DN+ M + MV L A + + E L+K
Sbjct: 250 RMAQYAVELWEMLK--KDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKK 305
>2q73_A MAZG, hypothetical protein; NTP-ppase, hydrolase; 1.80A {Vibrio SP}
PDB: 2q9l_A
Length = 100
Score = 26.9 bits (60), Expect = 3.4
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 183 QRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTL--------EENEDNSRTASEM 234
Q + P ++ KL+ EE EL ++ +E A E+
Sbjct: 7 QSHIKEFDYAPEQSEHYFF--KLI-----EEVGELSESIRKGKSGQPTLDELKGSVAEEL 59
Query: 235 ADVLYHAMVLLALKDV-------KAEEVLEVLRKRFS 264
DVLY + AL ++ E + + +++
Sbjct: 60 YDVLY---YVCALANIHGVNLEKTHELKEVLNKVKYN 93
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 3.8
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 209 KIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKA--EEVLEVLRKRFSHS 266
K REE + L+E + S+ + A KD++ + E + K ++
Sbjct: 89 KWREEQRKR---LQELDAASKVMEQ-------EWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 267 GIEEK 271
I +K
Sbjct: 139 RIADK 143
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
riken structural genomics/proteomics in RSGI, rossmann
fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Length = 212
Score = 27.1 bits (61), Expect = 5.5
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 16/72 (22%)
Query: 27 MKRNCLVFASSTESNSNPVLQSKVDR-----------LLDSVKWDNKGLAVAIAQNVDTG 75
MKR VFAS + +N Q+ VD LL + K + A +NV
Sbjct: 3 MKR-LAVFASGSGTN----FQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAF 57
Query: 76 AILMQGFANRDA 87
+ + ++ A
Sbjct: 58 VFSPKDYPSKAA 69
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 27.2 bits (60), Expect = 6.1
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 209 KIREEADELCRTLEENEDNSRT----ASEMADVLYHAMV-LLALKDVKAEEVLEVLRK 261
++ E ADEL ++ + N+ M + + + EE+ ++K
Sbjct: 338 RVSEYADELFEMIQ--KPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKK 393
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.5 bits (61), Expect = 6.2
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 21/67 (31%)
Query: 66 VAIAQNVDTGAILMQGFANRDALATTISSRKATFYSR------SR--STLWTKGETSQNF 117
V AQ + Q +ALA + R +R L +F
Sbjct: 413 VQKAQTKE------QADFAIEALAKAK-------FERLFRWILTRVNKALDKTKRQGASF 459
Query: 118 INVQDIF 124
+ + DI
Sbjct: 460 LGILDIA 466
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 27.3 bits (61), Expect = 7.3
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 22/67 (32%)
Query: 66 VAIAQNVDTGAILMQGFANRDALATTISSRKATFYSR------SR--STLWTKGETSQNF 117
V QN++ Q + ALA ++ Y R R TL TK +
Sbjct: 410 VTKGQNMN------QVVNSVGALAKSL-------YDRMFNWLVRRVNKTLDTK-AKRNYY 455
Query: 118 INVQDIF 124
I V DI
Sbjct: 456 IGVLDIA 462
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan
synthetase; transpeptidase, transferase; 2.30A
{Acinetobacter}
Length = 554
Score = 26.8 bits (60), Expect = 8.0
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 46 LQSKVDRLLDSVKWDNKGLAV-AIAQNVDTGAIL-MQGFANR 85
LQ + R L + N + AIA +V TG IL M +
Sbjct: 213 LQYIMYRELTAAGVANNARSATAIAVDVKTGEILAM---TSW 251
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.85A {Brucella melitensis BV}
Length = 209
Score = 26.7 bits (60), Expect = 8.1
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 28 KRNCLVFASSTESNSNPVLQSKVDRLLDSVKWDN---------------KGLAVAIAQNV 72
+ ++F S SN +++ L+ + + GLA A A +
Sbjct: 7 RNRVVIFISGGGSN----MEA----LIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGI 58
Query: 73 DTGAILMQGFANRDA 87
T + FA+++A
Sbjct: 59 ATQVFKRKDFASKEA 73
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 26.7 bits (60), Expect = 9.1
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 22/76 (28%)
Query: 57 VKWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSR------SR--STLW 108
+ +++ + + Q +RDALA + Y R S+ + +
Sbjct: 327 TGVGKRCSVISVPMDCN------QAAYSRDALAKAL-------YERLFNWLVSKINTIIN 373
Query: 109 TKGETSQNFINVQDIF 124
E I + DI+
Sbjct: 374 CTTE-KGPVIGILDIY 388
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.358
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,837,745
Number of extensions: 212824
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 601
Number of HSP's successfully gapped: 37
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)