RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023734
(278 letters)
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 124
Score = 110 bits (275), Expect = 6e-31
Identities = 37/98 (37%), Positives = 63/98 (64%)
Query: 58 KWDNKGLAVAIAQNVDTGAILMQGFANRDALATTISSRKATFYSRSRSTLWTKGETSQNF 117
+ + L +A+AQ+ +TG +LM + NR+AL T+ + A ++S SR LW KGE+S +
Sbjct: 10 NINGEDLIIAVAQDHETGEVLMVAYMNREALRRTLETGTAHYWSTSRGKLWLKGESSGHV 69
Query: 118 INVQDIFLDCDRDSIIYLGKPDGPTCHTGSETCYYTSV 155
V+D+ +DCD D+++ + +G CHTG +C+Y S+
Sbjct: 70 QRVKDVLVDCDGDAVVLKVEQEGGACHTGYRSCFYRSI 107
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE
{Chromobacterium violaceum [TaxId: 536]}
Length = 91
Score = 82.9 bits (205), Expect = 4e-21
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLC-SKIREEADELCRTLEENEDNSRTA 231
L ++ T+ R+ A+ S+ L + K+ EEA E +++D
Sbjct: 2 VLKNIADTLEARREAAPQS--SYVASLFHKGEDAILKKVAEEAAETLMA-SKDKDKLHLV 58
Query: 232 SEMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263
E+AD+ +H MVLL ++ E+V+ L +R
Sbjct: 59 REVADLWFHTMVLLTYHGLRPEDVVMELHRRE 90
>d1yvwa1 a.204.1.4 (A:4-95) Phosphoribosyl-ATP pyrophosphatase HisE
{Bacillus cereus [TaxId: 1396]}
Length = 92
Score = 80.2 bits (198), Expect = 6e-20
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 174 LYSLESTISQRKAASKNGKPSWTKRLLLDSK-LLCSKIREEADELCRTLEENEDNSRTAS 232
L TI +RK + S+T L + + KI EE E+ +N D
Sbjct: 2 FKLLYKTIEERKGSPLPE--SYTNYLFSKGEDKILKKIGEECAEVIIA-CKNNDKEEVVK 58
Query: 233 EMADVLYHAMVLLALKDVKAEEVLEVLRKRF 263
EM DV YH VLLA K++ E+V+ +++R
Sbjct: 59 EMVDVFYHCFVLLAEKNIALEDVMREVKERN 89
>d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase HisE
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 87
Score = 79.0 bits (195), Expect = 1e-19
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 171 MTTLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLC-SKIREEADELCRTLEENEDNSR 229
+ T L + + R S T L K+ EEA E+ E +E N
Sbjct: 1 VKTFEDLFAELGDRARTRPAD--STTVAALDGGVHALGKKLLEEAGEVWLAAE-HESNDA 57
Query: 230 TASEMADVLYHAMVLLALKDVKAEEVLEVL 259
A E++ +LY VL+ + + ++V L
Sbjct: 58 LAEEISQLLYWTQVLMISRGLSLDDVYRKL 87
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE
{Streptomyces coelicolor [TaxId: 1902]}
Length = 88
Score = 73.6 bits (181), Expect = 1e-17
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 173 TLYSLESTISQRKAASKNGKPSWTKRLLLDSKLLC-SKIREEADELCRTLEENEDNSRTA 231
T L + + + A S T L+ K+ EEA E+ E E A
Sbjct: 2 TFEELFTELQHKAANGDPAT-SRTAELVDKGVHAIGKKVVEEAAEVWMAAE-YEGKDAAA 59
Query: 232 SEMADVLYHAMVLLALKDVKAEEVLEVL 259
E++ +LYH V++ + + ++V L
Sbjct: 60 EEISQLLYHVQVMMVARGISLDDVYAHL 87
>d1vmga_ a.204.1.2 (A:) Hypothetical protein SSo12199 (SSo3215)
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 83
Score = 39.4 bits (92), Expect = 3e-05
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 183 QRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAM 242
Q K + + + + EE EL L + + E+ADV+ +
Sbjct: 9 QSKMKEMYFEKDSQR----GIYATFTWLVEEVGELAEALL-SNNLDSIQEELADVIAWTV 63
Query: 243 VLLALKDVKAEEVLE 257
+ L+ + EE L+
Sbjct: 64 SIANLEGIDIEEALK 78
>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
subtilis [TaxId: 1423]}
Length = 98
Score = 31.7 bits (72), Expect = 0.024
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 209 KIREEADELCRTL---------EENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLEVL 259
++ EE EL R + + ED+ E+ DVL+ + L D+ EE + +
Sbjct: 33 RLTEELGELAREVNHRYGEKPKKATEDDKSMEEEIGDVLFVLVCLANSLDISLEEAHDRV 92
Query: 260 RKRFS 264
+F+
Sbjct: 93 MHKFN 97
>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x),
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 368
Score = 30.9 bits (68), Expect = 0.17
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 43 NPVLQSKVDRLLDSVKWDNKGL-AVAIAQNVDTGAILMQGFANRDALATTISSRKATFYS 101
+ LQS ++ +D+ + KG A + TG IL A + T
Sbjct: 3 SSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEIL--------ATTQRPTFDADTKEG 54
Query: 102 RSRSTLWTKGETSQNF 117
+ +W N+
Sbjct: 55 ITEDFVWRDILYQSNY 70
>d2f09a1 b.61.8.1 (A:1-82) Hypothetical protein YdhA {Escherichia
coli [TaxId: 562]}
Length = 82
Score = 26.4 bits (58), Expect = 1.2
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 82 FANRDALATTISSRKATFYSRSRSTLWTKGETSQNFINVQDIFLDC 127
+ N+ S Y+ W+KG+ + + + + +C
Sbjct: 30 YDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC 75
>d2oiea1 a.204.1.2 (A:21-122) XTP3-transactivated gene A protein
homolog RS21-C6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 26.1 bits (57), Expect = 2.1
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 175 YSLESTIS--QRKAASKNGKPSWTKRLLLDSKLLCSKIREEADELCR------------T 220
+S E T+ +R A + W + + L + E EL
Sbjct: 5 FSPEPTLEDIRRLHAEFAAERDWEQ--FHQPRNLLLALVGEVGELAELFQWKSDTEPGPQ 62
Query: 221 LEENEDNSRTASEMADVLYHAMVLLALKDVKAEEVLE 257
++ + E++DVL + + L A V + +
Sbjct: 63 AWPPKERAALQEELSDVLIYLVALAARCHVDLPQAVI 99
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 27.4 bits (60), Expect = 2.2
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 193 PSWTKRLLLDSKLLCSKIREEADELCRTLEENEDNSRTASEMADVLYHAMVLLALKDVKA 252
P+ LL + L R+E + L+ N+ +V+ ++ D+ +
Sbjct: 36 PARLDELLFSAILESHDARKEHKQFVAELKAND---------INVVELIDLVAETYDLAS 86
Query: 253 EEVLEVLRKRFSHSGIEEKRSRVSEN 278
+E + + +E+ +SE
Sbjct: 87 QEA----KDKLIEEFLEDSEPVLSEE 108
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 26.9 bits (59), Expect = 3.5
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 142 TCHTGSETCYYTSVLDALKDQPV-QGNNLAM--TTLYSLESTISQRKAASKNGKPSWTKR 198
T H Y + P+ G +L + + E+ I + K + P +
Sbjct: 265 TVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIYPVLKEN 324
Query: 199 ------------LLLDSKLLCSKIREEADELCRTL 221
L + + IR EAD +
Sbjct: 325 LPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNF 359
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 26.5 bits (57), Expect = 3.7
Identities = 3/28 (10%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 239 YHA--MVLLALKDVKAEEVLEVLRKRFS 264
+ V++ ++K E+++ + +
Sbjct: 175 FLNSNAVVVGTGNIKHEDLVNSIESKNL 202
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 26.0 bits (56), Expect = 4.9
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 239 YHA--MVLLALKDVKAEEVLEVLRKRFSH 265
YH + D L VL +
Sbjct: 216 YHPSNARIWFYGDDDPVHRLRVLSEYLDM 244
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 25.5 bits (55), Expect = 7.7
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 193 PSWTKRLLLDSKLLCSKIREEADELCRTLEEN 224
PS LL D + ++ + + + + E
Sbjct: 29 PSNCDELLFDDVIWVNQAKRDHFDFVTKMRER 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.127 0.358
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 904,341
Number of extensions: 37960
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 18
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)