BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023737
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13049|TRI32_HUMAN E3 ubiquitin-protein ligase TRIM32 OS=Homo sapiens GN=TRIM32 PE=1
SV=2
Length = 653
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 110
E LECPIC ESF + P +L CGHT+C+ C+ L + I + CP+C+
Sbjct: 16 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 65
Query: 111 MVS 113
++
Sbjct: 66 KIT 68
>sp|Q8CH72|TRI32_MOUSE E3 ubiquitin-protein ligase TRIM32 OS=Mus musculus GN=Trim32 PE=1
SV=2
Length = 655
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 110
E LECPIC ESF + P +L CGHT+C+ C+ L + I + CP+C+
Sbjct: 17 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCS 66
Query: 111 MVS 113
++
Sbjct: 67 KIT 69
>sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1
SV=2
Length = 1625
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114
C +C +N E +P +L CGH CK+C+ + +TCP C VS
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCLSKM---------FSTSSDTTLTCPRCRHVS- 59
Query: 115 RLICKGNLKFPQKNYYLLWMVESMNG 140
+ +++ +KNY +L ++ + +G
Sbjct: 60 --VVGNSVQGLRKNYAMLALIHAASG 83
>sp|Q8K0W3|RN208_MOUSE RING finger protein 208 OS=Mus musculus GN=Rnf208 PE=2 SV=2
Length = 265
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 29 LKPSQVSSELSDDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
++P +S S + E LECP C ++NV + P VL C H++C+ C+ L
Sbjct: 124 IRPGPTASAPSSSGPVIAG---EPLECPTCGHTYNVTQRRPRVLSCLHSVCEQCLQILYE 180
Query: 89 AVIRLPTLPFQLPFFITCPWCN 110
+ + FI+CP C+
Sbjct: 181 SCPKY--------KFISCPTCH 194
>sp|Q9H0X6|RN208_HUMAN RING finger protein 208 OS=Homo sapiens GN=RNF208 PE=1 SV=2
Length = 261
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
E LECP C S+NV + P VL C H++C+ C+ L + + FI+CP C
Sbjct: 139 EPLECPTCGHSYNVTQRRPRVLSCLHSVCEQCLQILYESCPKY--------KFISCPTC 189
>sp|Q6INB3|RN182_XENLA E3 ubiquitin-protein ligase RNF182 OS=Xenopus laevis GN=rnf182
PE=2 SV=1
Length = 246
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 34 VSSELSDDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 86
++S+LS+D++ N + LEC IC+ +N+ + P VL C H +C C+ L
Sbjct: 1 MTSQLSEDNSESPNLNSDELECKICYNRYNLRQRKPKVLGCCHRVCAKCLYKL 53
>sp|Q4VGL6|RC3H1_MOUSE Probable E3 ubiquitin-protein ligase Roquin OS=Mus musculus
GN=Rc3h1 PE=1 SV=1
Length = 1130
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
L CPIC ++F+ P L CGHT+CK C+ L R
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHR 47
>sp|Q5TC82|RC3H1_HUMAN Probable E3 ubiquitin-protein ligase Roquin OS=Homo sapiens
GN=RC3H1 PE=1 SV=1
Length = 1133
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAV 90
L CPIC ++F+ P L CGHT+CK C+ L R
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKA 49
>sp|Q8CEF8|RN222_MOUSE RING finger protein 222 OS=Mus musculus GN=Rnf222 PE=2 SV=2
Length = 211
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111
G ECP+C+E F ++ L CGH C +C++ + + Q+ I CP C
Sbjct: 11 GSECPVCYEKFRDLDGASRTLSCGHVFCHDCLVKYLLST----RVDGQVQRTIVCPICRY 66
Query: 112 VSL 114
V+
Sbjct: 67 VTF 69
>sp|Q86UV7|TRI73_HUMAN Tripartite motif-containing protein 73 OS=Homo sapiens GN=TRIM73
PE=2 SV=1
Length = 250
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 23/94 (24%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
E+ L+CPIC E F E+L +L CGH+ CK C++ +L + L + CP C
Sbjct: 11 EDRLQCPICLEVFK--ESL--MLQCGHSYCKGCLV----------SLSYHLDTKVRCPMC 56
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN--GD 141
V G+ P N L W++E++ GD
Sbjct: 57 WQVV-----DGSSSLP--NVSLAWVIEALRLPGD 83
>sp|Q6NRD3|SH3R1_XENLA E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus laevis GN=sh3rf1 PE=2
SV=1
Length = 826
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 26/123 (21%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112
LECP+C E + VL C HT CK C+LG+ + L CP C
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVSSRKEL-----------RCPECRT- 54
Query: 113 SLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFRGDHQPASSLNRNSAVRNQVSHA 172
L+ G + P + +V ++G R + P GD S+ N +A+R Q S
Sbjct: 55 ---LVECGVDELPSN----ILLVRLLDGIRQR--PRKAGDG--GSAGNSTNALRAQGSVT 103
Query: 173 HNG 175
NG
Sbjct: 104 TNG 106
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
E L CPIC+ F+ + P L C HT+CK C+ L R
Sbjct: 10 EFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHR 47
>sp|A6NCQ9|RN222_HUMAN RING finger protein 222 OS=Homo sapiens GN=RNF222 PE=4 SV=1
Length = 220
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111
G ECP+C+E F +E L CGH C +C++ + + Q+ + CP C
Sbjct: 11 GSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLST----RVDGQVQRTLVCPICRY 66
Query: 112 VSL 114
V+
Sbjct: 67 VTF 69
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
E L CPIC+ F+ + P L C HT+CK C+ L R
Sbjct: 10 EFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHR 47
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 41.2 bits (95), Expect = 0.008, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
L CPIC ++F+ P L CGHT+CK C+ L R
Sbjct: 12 LSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHR 47
>sp|Q865W2|TRI50_PIG E3 ubiquitin-protein ligase TRIM50 OS=Sus scrofa GN=TRIM50 PE=2
SV=1
Length = 486
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
E+ L+CP+C E F P +L CGH+ CK C+L L R
Sbjct: 11 EDRLQCPVCLEVFKE----PLMLQCGHSYCKGCLLSLSR 45
>sp|Q86UV6|TRI74_HUMAN Tripartite motif-containing protein 74 OS=Homo sapiens GN=TRIM74
PE=2 SV=1
Length = 250
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 23/94 (24%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
E+ L+CPIC E F E+L +L CGH+ CK C L +L + L + CP C
Sbjct: 11 EDWLQCPICLEVFK--ESL--MLQCGHSYCKGC----------LVSLSYHLDTKVRCPMC 56
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN--GD 141
V G+ P N L W++E++ GD
Sbjct: 57 WQVV-----DGSSSLP--NVSLAWVIEALRLPGD 83
>sp|F6ZQ54|TRI13_XENTR Tripartite motif containing 13 OS=Xenopus tropicalis GN=trim13 PE=3
SV=1
Length = 408
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
EE L CPIC F+ P VL C H CK C+ G+ R T+ ++ P CP C
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLDGVLEENSR--TMQWR-PSSFKCPTC 57
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN 139
+ + G Q NY L +VE N
Sbjct: 58 RKETPTMGVNG----LQVNYLLKGIVEKYN 83
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114
CPIC F+++E Y+ CGH+ C C+ R P + + I + N +
Sbjct: 138 CPIC---FDMIEE-AYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVD-NIDHLYPNFLVN 192
Query: 115 RLICKGNLKFPQKNYYLLWMVESMNGDR 142
LI K +F +K + L V S NG R
Sbjct: 193 ELILKQKQRFEEKRFKLDHSVSSTNGHR 220
>sp|O74775|SIP5_SCHPO Protein sip5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sip5 PE=1 SV=1
Length = 554
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLP----FFI--- 104
+ECPIC+ + N Y C +C C + ++RA LPT+ P F +
Sbjct: 148 AMECPICFLYY--PSNFNYTRCCAQPICSECFVEIRRAEPHLPTVHANEPTPNEFDLISE 205
Query: 105 --TCPWCNMVSLRLICKGNLKF 124
CP+C +I K N K
Sbjct: 206 PAKCPYCMTERFGVIYKPNPKL 227
>sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1
SV=1
Length = 731
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114
CPIC F+++E Y+ CGH+ C C+ R P + + I + N +
Sbjct: 136 CPIC---FDMIEE-AYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVD-NIDHLYPNFLVN 190
Query: 115 RLICKGNLKFPQKNYYLLWMVESMNGDR 142
LI K +F +K + L V S NG R
Sbjct: 191 ELILKQKQRFEEKRFKLDHSVSSTNGHR 218
>sp|Q9CYB0|TRI13_MOUSE E3 ubiquitin-protein ligase TRIM13 OS=Mus musculus GN=Trim13 PE=2
SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
EE L CPIC F+ P VL C H CK C+ GL +R +L PF CP C
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLEGLLEGNVR-NSLWRPSPF--KCPTC 57
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN 139
+ + Q NY L +VE N
Sbjct: 58 R----KETSATGVNSLQVNYSLKGIVEKYN 83
>sp|Q96D59|RN183_HUMAN RING finger protein 183 OS=Homo sapiens GN=RNF183 PE=2 SV=1
Length = 192
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 86
RE ECP+CW FN + P +L C H+ C C+ L
Sbjct: 4 QQGRELEAECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHL 44
>sp|O60858|TRI13_HUMAN E3 ubiquitin-protein ligase TRIM13 OS=Homo sapiens GN=TRIM13 PE=1
SV=2
Length = 407
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
EE L CPIC F+ P VL C H CK C+ G+ +R +L PF CP C
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLEGILEGSVR-NSLWRPAPF--KCPTC 57
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN 139
+ + Q NY L +VE N
Sbjct: 58 R----KETSATGINSLQVNYSLKGIVEKYN 83
>sp|Q5M7V1|TRI13_RAT Tripartite motif-containing 13 OS=Rattus norvegicus GN=Trim13 PE=2
SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
EE L CPIC F+ P VL C H CK C+ GL +R +L PF CP C
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLEGLLEGNVR-NSLWRPSPF--KCPTC 57
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN 139
+ + Q NY L +VE N
Sbjct: 58 R----KETSATGVNSLQVNYSLKGIVEKYN 83
>sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59
PE=2 SV=1
Length = 403
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTL-PFQLPFFITCPW 108
EE L CPIC+ F P VL C HT C+NC+ + +A P ++P + CP
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIP--LKCPN 58
Query: 109 CNMVS 113
C ++
Sbjct: 59 CRSIT 63
>sp|Q810I1|TRI50_RAT E3 ubiquitin-protein ligase TRIM50 OS=Rattus norvegicus GN=Trim50
PE=2 SV=1
Length = 483
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
++ L+CPIC E F P +L CGH+ CKNC L +L L + CP C
Sbjct: 11 QDQLQCPICLEVFKE----PLMLQCGHSYCKNC----------LDSLSEHLDSELRCPVC 56
Query: 110 NM 111
Sbjct: 57 RQ 58
>sp|Q32L60|TRI13_BOVIN E3 ubiquitin-protein ligase TRIM13 OS=Bos taurus GN=TRIM13 PE=2
SV=2
Length = 407
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
EE L CPIC F+ P VL C H CK C+ G+ +R +L PF CP C
Sbjct: 5 EEDLTCPICCSLFDD----PRVLPCSHNFCKKCLEGILEGNVR-NSLWRSSPF--KCPTC 57
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN 139
+ + Q NY L +VE N
Sbjct: 58 R----KETSATGVNSLQVNYSLKGIVEKYN 83
>sp|P36407|TRI23_RAT E3 ubiquitin-protein ligase TRIM23 OS=Rattus norvegicus GN=Trim23
PE=2 SV=2
Length = 573
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 22/131 (16%)
Query: 53 LECPICWESFNVV-ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111
LEC +C + F++ + +P +L CGHT+C +C L LP I CP+
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDC----------LTRLPLH-GRAIRCPFDRQ 77
Query: 112 VSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFR--GDHQPASSLNRNSAVRNQV 169
V+ + + +KN+ LL ++E + N H G + A ++ S +R
Sbjct: 78 VT--DLGDSGVWGLKKNFALLELLERLQ------NGHIGQYGAAEEALGISGESIIRCDE 129
Query: 170 SHAHNGRATCS 180
AH C+
Sbjct: 130 DEAHVASVYCT 140
>sp|Q28E95|SH3R1_XENTR E3 ubiquitin-protein ligase SH3RF1 OS=Xenopus tropicalis
GN=sh3rf1 PE=2 SV=1
Length = 861
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT CK C+LG+ R +R P
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVSSRNELRCP 50
>sp|A5D8S5|SH3R1_DANRE E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio GN=sh3rf1 PE=2
SV=2
Length = 867
Score = 38.5 bits (88), Expect = 0.057, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT C+ C+LG+ R +R P
Sbjct: 10 LECPVCLERLDATAK---VLPCQHTFCRRCLLGIVGSRGELRCP 50
>sp|Q8QZS5|RN183_MOUSE RING finger protein 183 OS=Mus musculus GN=Rnf183 PE=2 SV=1
Length = 190
Score = 38.1 bits (87), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 86
+E ECP+CW FN + P VL C H+ C C+ L
Sbjct: 5 QGQELRAECPVCWNPFNNTFHTPKVLDCCHSFCVECLAHL 44
>sp|Q5RBR0|SH3R1_PONAB E3 ubiquitin-protein ligase SH3RF1 OS=Pongo abelii GN=SH3RF1 PE=2
SV=1
Length = 888
Score = 38.1 bits (87), Expect = 0.063, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT CK C+LG+ R +R P
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVGSRNELRCP 50
>sp|Q69ZI1|SH3R1_MOUSE E3 ubiquitin-protein ligase SH3RF1 OS=Mus musculus GN=Sh3rf1 PE=1
SV=2
Length = 892
Score = 38.1 bits (87), Expect = 0.063, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT CK C+LG+ R +R P
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVGSRNELRCP 50
>sp|Q7Z6J0|SH3R1_HUMAN E3 ubiquitin-protein ligase SH3RF1 OS=Homo sapiens GN=SH3RF1 PE=1
SV=2
Length = 888
Score = 38.1 bits (87), Expect = 0.063, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT CK C+LG+ R +R P
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVGSRNELRCP 50
>sp|Q503I2|TRI13_DANRE Tripartite motif-containing 13 OS=Danio rerio GN=trim13 PE=2 SV=1
Length = 404
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
EE L CPIC F P VL C H+ CK C+ G+ R PT ++ PF CP C
Sbjct: 5 EEDLTCPICCCLFED----PRVLPCSHSFCKKCLEGILDGN-RSPT--WRPPF--KCPTC 55
Query: 110 NMVSLRLICKGNLKFPQKNYYLLWMVESMN 139
++ + Q NY L +VE N
Sbjct: 56 RKETVH----NGIASLQVNYSLRGIVEKYN 81
>sp|Q922Y2|TRI59_MOUSE Tripartite motif-containing protein 59 OS=Mus musculus GN=Trim59
PE=2 SV=2
Length = 403
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPT-LPFQLPFFITCPW 108
EE L CPIC+ F P VL C HT C+NC+ + +A P ++P + CP
Sbjct: 5 EEELTCPICYSIFED----PRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIP--LKCPN 58
Query: 109 CNMV 112
C +
Sbjct: 59 CRSI 62
>sp|A5D7F8|SH3R1_BOVIN E3 ubiquitin-protein ligase SH3RF1 OS=Bos taurus GN=SH3RF1 PE=2
SV=1
Length = 840
Score = 38.1 bits (87), Expect = 0.072, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT CK C+LG+ R +R P
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVGSRNELRCP 50
>sp|Q71F54|SH3R1_RAT E3 ubiquitin-protein ligase SH3RF1 OS=Rattus norvegicus GN=Sh3rf1
PE=1 SV=1
Length = 894
Score = 38.1 bits (87), Expect = 0.073, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL--QRAVIRLP 94
LECP+C E + VL C HT CK C+LG+ R +R P
Sbjct: 10 LECPVCLERLDASAK---VLPCQHTFCKRCLLGIVGSRNELRCP 50
>sp|Q3UIW8|RN224_MOUSE RING finger protein 224 OS=Mus musculus GN=Rnf224 PE=2 SV=1
Length = 156
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 40 DDDASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQ 99
++ +L SR + C IC+ ++++ +LP L+CGHT C+ C+ L +P
Sbjct: 11 EEGTALTASRND---CIICYSAYDLSVHLPRRLYCGHTFCQACMQRLD--------MPAH 59
Query: 100 LPFFITCPWCNMVS 113
+I CP C +
Sbjct: 60 EQHWIPCPQCRQST 73
>sp|Q86XT4|TRI50_HUMAN E3 ubiquitin-protein ligase TRIM50 OS=Homo sapiens GN=TRIM50 PE=1
SV=1
Length = 487
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 86
E+ L+CPIC E F P +L CGH+ CK C++ L
Sbjct: 11 EDWLQCPICLEVFKE----PLMLQCGHSYCKGCLVSL 43
>sp|Q8BGX0|TRI23_MOUSE E3 ubiquitin-protein ligase TRIM23 OS=Mus musculus GN=Trim23 PE=2
SV=1
Length = 574
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 22/131 (16%)
Query: 53 LECPICWESFNVV-ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111
LEC +C + F++ + +P +L CGHT+C +C L LP I CP+
Sbjct: 29 LECGVCEDVFSLQGDKVPRLLLCGHTVCHDC----------LTRLPLH-GRAIRCPFDRQ 77
Query: 112 VSLRLICKGNLKFPQKNYYLLWMVESMNGDRSKSNPHFR--GDHQPASSLNRNSAVRNQV 169
V+ + + +KN+ LL ++E + N H G + A + S +R
Sbjct: 78 VT--DLGDSGVWGLKKNFALLELLERLQ------NGHIGQYGAAEEAIGTSGESIIRCDE 129
Query: 170 SHAHNGRATCS 180
AH C+
Sbjct: 130 DEAHVASVYCT 140
>sp|P0DH78|RN224_HUMAN RING finger protein 224 OS=Homo sapiens GN=RNF224 PE=4 SV=1
Length = 156
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCV 83
EE +C IC ++++ +LP L+CGHT C+ CV
Sbjct: 19 EERTDCIICCSAYDLSGHLPRRLYCGHTFCQACV 52
>sp|Q5ZMD4|TRI59_CHICK Tripartite motif-containing protein 59 OS=Gallus gallus GN=TRIM59
PE=2 SV=1
Length = 408
Score = 37.7 bits (86), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPT-----LPFQLPFFI 104
EE L C IC+ F P VL C HT C++C+ G VI+L + P ++P +
Sbjct: 5 EEELTCSICYSLFED----PRVLPCSHTFCRSCLEG----VIQLSSNFSIWRPLRVP--L 54
Query: 105 TCPWCNMVSLRLICKGNLKFPQKNYYLLWMVESM----NGDRSKSNPHFR 150
CP C + + + G P N+ L ++E + D + + H+R
Sbjct: 55 KCPNCRSI-VEIPASGTESLPI-NFALKAIIEKYRQEDHSDVATCSEHYR 102
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPT 95
LECPIC E+ P+ CGHT C C+L + PT
Sbjct: 83 LECPICTEALQ----RPFTTHCGHTYCYECLLNWLKESKSCPT 121
>sp|Q3SWY0|RN183_BOVIN RING finger protein 183 OS=Bos taurus GN=RNF183 PE=2 SV=1
Length = 188
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 54 ECPICWESFNVVENLPYVLWCGHTLCKNCV 83
ECP+CW FN + P VL C H+ C C+
Sbjct: 10 ECPVCWNPFNNTFHTPKVLDCCHSFCVECL 39
>sp|Q8TEC5|SH3R2_HUMAN Putative E3 ubiquitin-protein ligase SH3RF2 OS=Homo sapiens
GN=SH3RF2 PE=1 SV=3
Length = 729
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 14/56 (25%)
Query: 54 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109
ECP+C+E +V VL C HT CK C LQR F+ + CP C
Sbjct: 11 ECPVCFEKLDVTAK---VLPCQHTFCKPC---LQRV--------FKAHKELRCPEC 52
>sp|Q7XZZ3|BAHL1_ORYSJ Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. japonica GN=Os03g0650900 PE=2 SV=1
Length = 339
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 50 EEGLECPICWES-FNVVENLPYVLWCGHTLCKNCVLG 85
E L CPIC ++ FN PY L CGH CK C G
Sbjct: 230 EYSLTCPICLDTLFN-----PYALSCGHLFCKGCACG 261
>sp|A2XK56|BAHL1_ORYSI Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa
subsp. indica GN=OsI_12825 PE=3 SV=1
Length = 339
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 50 EEGLECPICWES-FNVVENLPYVLWCGHTLCKNCVLG 85
E L CPIC ++ FN PY L CGH CK C G
Sbjct: 230 EYSLTCPICLDTLFN-----PYALSCGHLFCKGCACG 261
>sp|Q810I2|TRI50_MOUSE E3 ubiquitin-protein ligase TRIM50 OS=Mus musculus GN=Trim50 PE=2
SV=1
Length = 483
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88
++ L+CPIC E F P +L CGH+ CK+C+ L +
Sbjct: 11 QDQLQCPICLEVFKE----PLMLQCGHSYCKDCLDNLSQ 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,750,473
Number of Sequences: 539616
Number of extensions: 3704730
Number of successful extensions: 12226
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 12096
Number of HSP's gapped (non-prelim): 212
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)