Query 023737
Match_columns 278
No_of_seqs 211 out of 1399
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03208 E3 ubiquitin-protein 99.2 5.7E-11 1.2E-15 103.3 8.2 66 45-114 11-79 (193)
2 PF15227 zf-C3HC4_4: zinc fing 99.2 9E-12 2E-16 83.1 2.5 42 55-109 1-42 (42)
3 smart00504 Ubox Modified RING 99.1 1.9E-10 4.2E-15 82.2 4.9 62 52-137 1-62 (63)
4 TIGR00599 rad18 DNA repair pro 99.1 1.3E-10 2.8E-15 111.6 4.7 74 45-142 19-92 (397)
5 PF13445 zf-RING_UBOX: RING-ty 99.0 2.7E-10 5.8E-15 76.4 2.8 34 55-89 1-34 (43)
6 KOG0287 Postreplication repair 99.0 2E-10 4.4E-15 106.5 2.9 73 45-141 16-88 (442)
7 PF04564 U-box: U-box domain; 99.0 5.8E-10 1.3E-14 82.9 4.0 70 51-143 3-72 (73)
8 PF13639 zf-RING_2: Ring finge 98.9 6.4E-10 1.4E-14 74.5 2.6 43 54-110 2-44 (44)
9 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.8E-09 3.9E-14 70.6 2.3 31 55-89 1-32 (39)
10 PF13920 zf-C3HC4_3: Zinc fing 98.8 4.4E-09 9.6E-14 72.3 3.2 47 51-114 1-48 (50)
11 KOG2177 Predicted E3 ubiquitin 98.8 4.5E-09 9.8E-14 93.6 4.1 71 46-142 7-77 (386)
12 PF14634 zf-RING_5: zinc-RING 98.8 3.6E-09 7.7E-14 71.0 2.3 44 54-111 1-44 (44)
13 PF14835 zf-RING_6: zf-RING of 98.8 8.9E-10 1.9E-14 79.3 -0.7 62 48-135 3-65 (65)
14 KOG0320 Predicted E3 ubiquitin 98.8 3.6E-09 7.8E-14 90.4 2.8 52 48-114 127-178 (187)
15 KOG0823 Predicted E3 ubiquitin 98.8 9.3E-09 2E-13 91.3 5.4 51 49-113 44-94 (230)
16 PF00097 zf-C3HC4: Zinc finger 98.7 7.6E-09 1.6E-13 67.9 2.7 40 55-109 1-41 (41)
17 PHA02929 N1R/p28-like protein; 98.7 8.4E-09 1.8E-13 93.0 3.7 52 50-114 172-227 (238)
18 COG5432 RAD18 RING-finger-cont 98.7 1.3E-08 2.8E-13 92.9 3.5 73 43-139 16-88 (391)
19 KOG0317 Predicted E3 ubiquitin 98.7 1.7E-08 3.6E-13 92.2 3.7 52 46-114 233-284 (293)
20 PHA02926 zinc finger-like prot 98.6 5E-08 1.1E-12 86.3 3.9 61 47-114 165-230 (242)
21 cd00162 RING RING-finger (Real 98.5 9.3E-08 2E-12 62.4 3.3 43 54-112 1-44 (45)
22 smart00184 RING Ring finger. E 98.3 4.2E-07 9.1E-12 57.2 3.3 30 55-88 1-30 (39)
23 KOG4628 Predicted E3 ubiquitin 98.3 3.6E-07 7.9E-12 86.2 2.7 48 53-113 230-277 (348)
24 PF12678 zf-rbx1: RING-H2 zinc 98.2 1E-06 2.2E-11 65.5 3.6 44 54-110 21-73 (73)
25 COG5574 PEX10 RING-finger-cont 98.2 6.3E-07 1.4E-11 81.1 2.9 48 50-113 213-261 (271)
26 KOG2164 Predicted E3 ubiquitin 98.2 5.9E-07 1.3E-11 87.7 2.8 51 52-114 186-236 (513)
27 KOG4185 Predicted E3 ubiquitin 98.2 1.2E-06 2.5E-11 81.2 4.5 74 52-139 3-78 (296)
28 KOG0311 Predicted E3 ubiquitin 98.0 1E-06 2.2E-11 82.6 -0.2 52 46-113 37-89 (381)
29 PF12861 zf-Apc11: Anaphase-pr 98.0 6.6E-06 1.4E-10 62.8 3.7 53 51-113 20-81 (85)
30 TIGR00570 cdk7 CDK-activating 98.0 3.6E-06 7.8E-11 78.4 2.1 51 52-114 3-54 (309)
31 KOG4367 Predicted Zn-finger pr 97.9 8.8E-06 1.9E-10 78.3 4.4 87 49-142 1-159 (699)
32 COG5243 HRD1 HRD ubiquitin lig 97.9 7.8E-06 1.7E-10 77.3 3.1 51 50-113 285-344 (491)
33 COG5540 RING-finger-containing 97.9 1.2E-05 2.5E-10 74.3 3.5 52 49-113 320-371 (374)
34 KOG0802 E3 ubiquitin ligase [P 97.8 8.9E-06 1.9E-10 81.7 2.9 51 49-112 288-339 (543)
35 KOG2660 Locus-specific chromos 97.8 1.5E-05 3.2E-10 74.3 2.6 69 47-137 10-81 (331)
36 KOG4159 Predicted E3 ubiquitin 97.7 1.4E-05 3.1E-10 77.1 1.9 52 46-114 78-129 (398)
37 KOG0978 E3 ubiquitin ligase in 97.7 1.2E-05 2.7E-10 81.8 0.7 53 45-113 636-688 (698)
38 KOG0824 Predicted E3 ubiquitin 97.5 2.6E-05 5.7E-10 71.9 1.0 47 52-114 7-53 (324)
39 COG5152 Uncharacterized conser 97.5 6.5E-05 1.4E-09 65.7 2.4 50 48-114 192-241 (259)
40 PF11793 FANCL_C: FANCL C-term 97.4 6.6E-05 1.4E-09 55.4 1.8 61 52-114 2-66 (70)
41 COG5222 Uncharacterized conser 97.4 0.00011 2.3E-09 67.9 3.1 66 52-139 274-340 (427)
42 KOG0804 Cytoplasmic Zn-finger 97.4 9E-05 1.9E-09 71.6 2.1 51 47-112 170-220 (493)
43 KOG1813 Predicted E3 ubiquitin 97.3 0.00011 2.4E-09 67.6 1.7 45 53-114 242-286 (313)
44 KOG2879 Predicted E3 ubiquitin 97.2 0.00027 5.9E-09 64.5 3.4 52 47-113 234-286 (298)
45 PF11789 zf-Nse: Zinc-finger o 97.2 0.00023 4.9E-09 50.5 2.3 35 49-87 8-43 (57)
46 KOG1039 Predicted E3 ubiquitin 97.1 0.00064 1.4E-08 64.6 5.2 59 50-114 159-221 (344)
47 KOG1645 RING-finger-containing 97.0 0.00044 9.5E-09 66.3 3.3 54 50-114 2-56 (463)
48 KOG4265 Predicted E3 ubiquitin 96.9 0.00073 1.6E-08 63.8 3.7 48 50-114 288-336 (349)
49 KOG1734 Predicted RING-contain 96.8 0.00033 7.1E-09 63.9 0.5 52 51-113 223-280 (328)
50 KOG0297 TNF receptor-associate 96.7 0.0006 1.3E-08 66.1 1.5 50 47-113 16-66 (391)
51 KOG3161 Predicted E3 ubiquitin 96.5 0.00088 1.9E-08 67.4 1.2 71 47-135 6-76 (861)
52 KOG1785 Tyrosine kinase negati 96.5 0.00084 1.8E-08 64.3 1.0 45 54-113 371-415 (563)
53 KOG1002 Nucleotide excision re 96.5 0.001 2.2E-08 65.8 1.3 54 48-113 532-585 (791)
54 KOG1493 Anaphase-promoting com 96.4 0.00067 1.4E-08 50.6 -0.3 50 54-113 22-80 (84)
55 KOG0825 PHD Zn-finger protein 96.4 0.0017 3.6E-08 66.8 1.9 57 51-121 122-178 (1134)
56 KOG4172 Predicted E3 ubiquitin 96.2 0.0011 2.3E-08 46.5 -0.2 45 53-113 8-53 (62)
57 COG5194 APC11 Component of SCF 96.2 0.0058 1.3E-07 46.1 3.6 49 53-114 32-81 (88)
58 KOG0827 Predicted E3 ubiquitin 96.2 0.0026 5.5E-08 60.8 1.9 49 53-111 5-53 (465)
59 smart00744 RINGv The RING-vari 95.8 0.011 2.4E-07 40.5 3.3 44 54-110 1-49 (49)
60 KOG0828 Predicted E3 ubiquitin 95.6 0.0054 1.2E-07 60.3 1.5 53 49-113 568-633 (636)
61 COG5236 Uncharacterized conser 95.5 0.024 5.1E-07 53.8 5.4 62 44-120 53-114 (493)
62 COG5219 Uncharacterized conser 95.2 0.0078 1.7E-07 63.2 1.2 53 50-113 1467-1522(1525)
63 PF04641 Rtf2: Rtf2 RING-finge 95.1 0.022 4.9E-07 52.1 4.0 54 47-114 108-161 (260)
64 COG5175 MOT2 Transcriptional r 95.1 0.021 4.5E-07 53.9 3.6 51 51-113 13-63 (480)
65 PF14570 zf-RING_4: RING/Ubox 95.0 0.012 2.7E-07 40.2 1.4 46 55-112 1-46 (48)
66 KOG4692 Predicted E3 ubiquitin 94.8 0.016 3.4E-07 55.0 2.1 47 50-113 420-466 (489)
67 KOG1941 Acetylcholine receptor 94.8 0.0094 2E-07 57.2 0.5 52 50-112 363-414 (518)
68 KOG1571 Predicted E3 ubiquitin 94.6 0.019 4.1E-07 54.5 2.1 46 48-113 301-346 (355)
69 KOG3970 Predicted E3 ubiquitin 94.6 0.24 5.2E-06 44.5 8.9 57 50-113 48-104 (299)
70 PF14447 Prok-RING_4: Prokaryo 94.6 0.013 2.8E-07 41.2 0.7 43 52-113 7-49 (55)
71 KOG3039 Uncharacterized conser 94.6 0.022 4.8E-07 51.6 2.3 51 50-113 219-269 (303)
72 KOG4275 Predicted E3 ubiquitin 94.5 0.0071 1.5E-07 55.9 -1.1 43 51-114 299-342 (350)
73 KOG3800 Predicted E3 ubiquitin 94.4 0.037 7.9E-07 51.2 3.3 47 54-112 2-49 (300)
74 KOG3002 Zn finger protein [Gen 94.2 0.071 1.5E-06 50.0 4.8 63 47-139 43-106 (299)
75 KOG2817 Predicted E3 ubiquitin 94.2 0.036 7.7E-07 53.3 2.9 55 47-112 329-383 (394)
76 KOG1814 Predicted E3 ubiquitin 94.2 0.021 4.4E-07 55.2 1.2 59 49-113 181-239 (445)
77 PHA03096 p28-like protein; Pro 92.7 0.14 2.9E-06 47.8 4.1 37 53-89 179-219 (284)
78 PF07800 DUF1644: Protein of u 92.7 0.17 3.7E-06 43.1 4.2 59 51-113 1-90 (162)
79 PF05290 Baculo_IE-1: Baculovi 92.6 0.087 1.9E-06 43.6 2.3 49 51-113 79-131 (140)
80 KOG1001 Helicase-like transcri 91.8 0.076 1.7E-06 55.0 1.4 45 53-113 455-499 (674)
81 KOG0826 Predicted E3 ubiquitin 91.4 0.21 4.6E-06 47.1 3.7 47 49-112 297-344 (357)
82 KOG4362 Transcriptional regula 91.0 0.077 1.7E-06 54.5 0.5 52 48-113 17-68 (684)
83 KOG4739 Uncharacterized protei 91.0 0.079 1.7E-06 47.8 0.5 43 53-113 4-47 (233)
84 KOG1812 Predicted E3 ubiquitin 90.2 0.17 3.6E-06 49.1 2.0 40 51-90 145-184 (384)
85 KOG2932 E3 ubiquitin ligase in 90.1 0.11 2.5E-06 48.5 0.8 47 53-117 91-137 (389)
86 PF10367 Vps39_2: Vacuolar sor 89.9 0.11 2.3E-06 40.3 0.4 36 47-84 73-108 (109)
87 COG5109 Uncharacterized conser 89.8 0.26 5.5E-06 46.4 2.7 55 47-112 331-385 (396)
88 KOG2114 Vacuolar assembly/sort 89.4 0.17 3.6E-06 53.0 1.3 29 52-84 840-869 (933)
89 KOG1940 Zn-finger protein [Gen 89.1 0.2 4.3E-06 46.4 1.5 47 52-111 158-204 (276)
90 KOG4185 Predicted E3 ubiquitin 87.8 0.17 3.6E-06 46.8 0.1 49 52-112 207-265 (296)
91 KOG1428 Inhibitor of type V ad 87.2 0.7 1.5E-05 51.3 4.2 65 49-117 3483-3547(3738)
92 PF03854 zf-P11: P-11 zinc fin 86.1 0.35 7.6E-06 33.0 0.9 42 53-113 3-45 (50)
93 PF05883 Baculo_RING: Baculovi 85.6 0.7 1.5E-05 38.3 2.7 35 52-87 26-66 (134)
94 KOG2930 SCF ubiquitin ligase, 85.3 0.55 1.2E-05 37.2 1.8 28 73-113 80-107 (114)
95 KOG0298 DEAD box-containing he 84.0 0.41 9E-06 52.2 0.8 50 47-112 1148-1197(1394)
96 KOG2789 Putative Zn-finger pro 81.5 0.68 1.5E-05 44.8 1.1 73 51-125 73-156 (482)
97 PHA02825 LAP/PHD finger-like p 81.2 1.7 3.7E-05 37.1 3.3 51 49-113 5-58 (162)
98 KOG0825 PHD Zn-finger protein 80.0 2.3 5E-05 44.6 4.3 42 48-89 92-136 (1134)
99 PF08746 zf-RING-like: RING-li 79.9 1.8 3.8E-05 28.8 2.4 28 55-86 1-31 (43)
100 KOG1952 Transcription factor N 79.7 1.5 3.2E-05 46.2 2.9 56 49-112 188-245 (950)
101 KOG1815 Predicted E3 ubiquitin 79.6 1.3 2.8E-05 43.7 2.4 40 49-91 67-106 (444)
102 COG5220 TFB3 Cdk activating ki 79.4 0.77 1.7E-05 41.7 0.7 39 51-89 9-49 (314)
103 PF12906 RINGv: RING-variant d 78.1 2.2 4.7E-05 28.8 2.5 34 55-90 1-39 (47)
104 PF14494 DUF4436: Domain of un 77.0 4.1 8.9E-05 37.4 4.7 33 227-259 170-216 (256)
105 KOG2034 Vacuolar sorting prote 76.9 1.3 2.9E-05 46.7 1.7 38 48-88 813-851 (911)
106 PF10272 Tmpp129: Putative tra 76.5 1.8 3.9E-05 41.6 2.3 41 74-114 311-351 (358)
107 PF02891 zf-MIZ: MIZ/SP-RING z 76.4 2.2 4.8E-05 29.2 2.1 47 52-111 2-49 (50)
108 PF07234 DUF1426: Protein of u 75.6 6.9 0.00015 30.8 4.9 32 229-260 11-42 (117)
109 KOG3039 Uncharacterized conser 73.2 2.6 5.6E-05 38.6 2.3 39 47-89 38-76 (303)
110 PHA02702 ORF033 IMV membrane p 72.5 3.3 7.1E-05 30.9 2.3 22 245-266 47-68 (78)
111 KOG3268 Predicted E3 ubiquitin 70.9 4 8.7E-05 35.6 2.9 41 72-114 188-228 (234)
112 PF07191 zinc-ribbons_6: zinc- 69.6 0.42 9.1E-06 35.3 -2.9 41 52-114 1-41 (70)
113 KOG2169 Zn-finger transcriptio 65.8 4.7 0.0001 41.7 2.7 76 44-140 298-375 (636)
114 PF10571 UPF0547: Uncharacteri 64.2 3.2 6.9E-05 24.7 0.7 11 54-64 2-12 (26)
115 KOG3579 Predicted E3 ubiquitin 63.4 9 0.0002 35.8 3.8 38 50-91 266-307 (352)
116 KOG1100 Predicted E3 ubiquitin 63.2 2.6 5.6E-05 37.5 0.2 37 55-112 161-198 (207)
117 PF15616 TerY-C: TerY-C metal 61.5 6.2 0.00013 32.7 2.1 44 47-113 72-115 (131)
118 PF05605 zf-Di19: Drought indu 59.3 3.4 7.3E-05 28.4 0.2 14 51-64 1-14 (54)
119 PHA02862 5L protein; Provision 57.9 8.2 0.00018 32.6 2.3 45 53-113 3-52 (156)
120 cd00065 FYVE FYVE domain; Zinc 56.8 7 0.00015 26.7 1.5 34 53-86 3-36 (57)
121 smart00064 FYVE Protein presen 55.0 10 0.00022 27.0 2.1 36 51-86 9-44 (68)
122 KOG4767 Cytochrome c oxidase, 54.2 29 0.00063 30.8 5.2 15 250-264 75-89 (231)
123 PHA03055 Hypothetical protein; 54.1 11 0.00024 28.4 2.2 17 250-266 55-71 (79)
124 KOG3053 Uncharacterized conser 52.3 20 0.00042 33.1 3.9 62 48-114 16-82 (293)
125 PF06844 DUF1244: Protein of u 52.1 9.6 0.00021 27.8 1.6 15 77-91 11-25 (68)
126 PHA03062 putative IMV membrane 51.0 14 0.00029 27.9 2.3 17 250-266 56-72 (78)
127 PF10497 zf-4CXXC_R1: Zinc-fin 50.9 14 0.00031 29.2 2.6 60 50-113 5-71 (105)
128 PF01363 FYVE: FYVE zinc finge 50.6 6.5 0.00014 28.1 0.5 35 50-85 7-42 (69)
129 PF05293 ASFV_L11L: African sw 49.8 45 0.00096 24.3 4.7 43 220-272 8-54 (78)
130 KOG2068 MOT2 transcription fac 49.1 9.7 0.00021 36.1 1.5 48 53-113 250-297 (327)
131 PF06906 DUF1272: Protein of u 47.9 26 0.00056 24.8 3.1 46 53-113 6-51 (57)
132 PF02790 COX2_TM: Cytochrome C 47.1 46 0.00099 24.3 4.7 19 252-270 65-83 (84)
133 PF03839 Sec62: Translocation 46.8 21 0.00046 32.2 3.3 36 215-250 108-144 (224)
134 PF13198 DUF4014: Protein of u 45.4 45 0.00098 24.7 4.2 21 228-248 20-40 (72)
135 PF04713 Pox_I5: Poxvirus prot 44.6 18 0.0004 27.1 2.1 17 250-266 55-71 (77)
136 KOG0314 Predicted E3 ubiquitin 44.5 38 0.00081 33.7 4.8 36 47-86 214-252 (448)
137 PF02318 FYVE_2: FYVE-type zin 44.1 12 0.00027 29.9 1.3 50 51-112 53-103 (118)
138 COG3492 Uncharacterized protei 43.8 17 0.00037 28.3 1.9 16 77-92 42-57 (104)
139 TIGR00869 sec62 protein transl 41.7 38 0.00082 30.8 4.1 53 215-267 116-180 (232)
140 COG3813 Uncharacterized protei 41.1 24 0.00053 26.3 2.3 45 54-113 7-51 (84)
141 KOG1812 Predicted E3 ubiquitin 40.6 14 0.00031 35.8 1.3 38 50-87 304-342 (384)
142 KOG3113 Uncharacterized conser 39.6 23 0.0005 32.6 2.3 51 48-113 107-157 (293)
143 PF14353 CpXC: CpXC protein 38.0 31 0.00067 27.7 2.7 13 52-64 1-13 (128)
144 KOG3899 Uncharacterized conser 37.6 11 0.00024 35.4 0.0 39 74-114 325-365 (381)
145 KOG2927 Membrane component of 36.8 41 0.00088 32.4 3.6 43 225-267 197-251 (372)
146 PF08636 Pkr1: ER protein Pkr1 35.3 1.1E+02 0.0024 22.9 5.0 11 267-277 60-70 (75)
147 PF05915 DUF872: Eukaryotic pr 35.0 1E+02 0.0022 24.8 5.2 45 222-266 38-98 (115)
148 KOG2231 Predicted E3 ubiquitin 34.3 27 0.00059 36.3 2.2 49 54-113 2-51 (669)
149 PHA03164 hypothetical protein; 33.7 35 0.00076 25.7 2.1 21 216-236 60-80 (88)
150 PLN02189 cellulose synthase 32.8 34 0.00073 37.4 2.7 51 52-114 34-87 (1040)
151 PF14257 DUF4349: Domain of un 31.8 47 0.001 30.0 3.2 24 225-248 235-258 (262)
152 smart00647 IBR In Between Ring 31.7 13 0.00028 25.6 -0.4 35 52-86 18-58 (64)
153 KOG0824 Predicted E3 ubiquitin 31.6 40 0.00087 31.8 2.7 51 47-114 100-151 (324)
154 PF04246 RseC_MucC: Positive r 30.9 1.4E+02 0.003 24.1 5.6 16 231-246 71-86 (135)
155 PF14569 zf-UDP: Zinc-binding 30.7 66 0.0014 24.3 3.2 51 51-113 8-61 (80)
156 PF09680 Tiny_TM_bacill: Prote 30.7 48 0.001 19.4 1.9 14 240-253 6-19 (24)
157 PF14446 Prok-RING_1: Prokaryo 30.5 51 0.0011 23.1 2.4 33 51-85 4-38 (54)
158 PLN02436 cellulose synthase A 29.4 41 0.00088 37.0 2.6 51 52-114 36-89 (1094)
159 TIGR03068 srtB_sig_NPQTN sorta 29.2 57 0.0012 20.5 2.2 8 234-241 12-19 (33)
160 PRK11088 rrmA 23S rRNA methylt 28.2 36 0.00078 30.8 1.8 26 52-78 2-27 (272)
161 COG5183 SSM4 Protein involved 28.1 49 0.0011 35.4 2.8 51 50-113 10-65 (1175)
162 PF00301 Rubredoxin: Rubredoxi 26.9 48 0.001 22.4 1.7 14 99-112 30-43 (47)
163 MTH00154 COX2 cytochrome c oxi 26.5 1.4E+02 0.0029 26.9 5.1 20 254-273 66-85 (227)
164 COG4665 FcbT2 TRAP-type mannit 26.1 43 0.00094 29.0 1.7 20 249-268 96-116 (182)
165 PRK03001 M48 family peptidase; 25.4 1.1E+02 0.0024 28.1 4.4 18 251-268 33-50 (283)
166 PF01485 IBR: IBR domain; Int 25.2 22 0.00048 24.3 -0.1 34 53-86 19-58 (64)
167 TIGR01732 tiny_TM_bacill conse 24.8 75 0.0016 18.9 2.0 13 241-253 9-21 (26)
168 PF06692 MNSV_P7B: Melon necro 24.7 70 0.0015 22.6 2.2 16 223-238 15-30 (61)
169 KOG1609 Protein involved in mR 24.4 95 0.002 28.3 3.9 52 51-113 77-133 (323)
170 PF06827 zf-FPG_IleRS: Zinc fi 24.1 21 0.00045 21.4 -0.4 12 53-64 2-13 (30)
171 PF10112 Halogen_Hydrol: 5-bro 24.1 2E+02 0.0043 24.8 5.6 30 236-265 21-50 (199)
172 KOG0428 Non-canonical ubiquiti 24.0 4.9E+02 0.011 24.0 8.1 28 37-64 132-159 (314)
173 KOG3249 Uncharacterized conser 23.8 1.7E+02 0.0036 25.3 4.8 15 229-243 107-121 (181)
174 PF10749 DUF2534: Protein of u 23.6 59 0.0013 24.8 1.8 25 235-259 42-77 (85)
175 KOG0309 Conserved WD40 repeat- 23.0 51 0.0011 35.0 1.8 36 50-88 1026-1062(1081)
176 PLN02915 cellulose synthase A 22.6 62 0.0013 35.5 2.5 52 51-114 14-68 (1044)
177 PF08637 NCA2: ATP synthase re 22.6 56 0.0012 30.5 1.9 34 237-270 144-184 (290)
178 KOG4718 Non-SMC (structural ma 22.5 43 0.00094 30.1 1.1 44 52-112 181-225 (235)
179 COG4920 Predicted membrane pro 22.4 92 0.002 28.0 3.1 61 203-263 87-160 (249)
180 MTH00047 COX2 cytochrome c oxi 22.0 1.7E+02 0.0036 25.7 4.7 22 252-273 52-73 (194)
181 PHA02655 hypothetical protein; 22.0 58 0.0013 24.2 1.5 22 229-250 62-83 (94)
182 PTZ00303 phosphatidylinositol 21.7 36 0.00078 36.3 0.5 59 53-111 461-527 (1374)
183 COG3162 Predicted membrane pro 21.5 1.3E+02 0.0027 23.9 3.3 16 262-277 82-97 (102)
184 PRK04989 psbM photosystem II r 21.5 1.5E+02 0.0033 18.9 3.1 9 227-235 6-14 (35)
185 PLN02638 cellulose synthase A 21.4 77 0.0017 34.9 2.9 51 52-114 17-70 (1079)
186 KOG3005 GIY-YIG type nuclease 21.2 1.3E+02 0.0028 28.0 3.9 54 53-112 183-241 (276)
187 smart00834 CxxC_CXXC_SSSS Puta 21.1 49 0.0011 20.7 0.9 11 103-113 26-36 (41)
188 PF13719 zinc_ribbon_5: zinc-r 21.0 76 0.0016 20.1 1.7 12 53-64 3-14 (37)
189 PRK05978 hypothetical protein; 21.0 2.2E+02 0.0048 24.0 5.0 8 105-112 35-42 (148)
190 PF06143 Baculo_11_kDa: Baculo 21.0 1.3E+02 0.0029 22.9 3.4 23 197-219 14-36 (84)
191 PF13721 SecD-TM1: SecD export 20.9 65 0.0014 25.2 1.7 10 229-238 16-25 (101)
192 PF11241 DUF3043: Protein of u 20.8 1.9E+02 0.0042 25.0 4.7 11 194-204 65-75 (170)
193 PF13240 zinc_ribbon_2: zinc-r 20.6 57 0.0012 18.6 1.0 7 105-111 15-21 (23)
194 COG4647 AcxC Acetone carboxyla 20.5 52 0.0011 27.3 1.1 13 69-81 70-82 (165)
195 PF09538 FYDLN_acid: Protein o 20.4 71 0.0015 25.5 1.9 14 51-64 8-21 (108)
196 PF05399 EVI2A: Ectropic viral 20.1 1.6E+02 0.0035 26.4 4.2 16 240-255 140-155 (227)
No 1
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.19 E-value=5.7e-11 Score=103.32 Aligned_cols=66 Identities=21% Similarity=0.341 Sum_probs=46.6
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCC---CCCCCCcccccccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTL---PFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~---p~~~~~~i~CP~CR~~~~ 114 (278)
...+..+.++|+||++.+.+ |++++|||.||+.||.+|+......... .........||.||..+.
T Consensus 11 ~~~~~~~~~~CpICld~~~d----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRD----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred eeccCCCccCCccCCCcCCC----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 34555678999999999999 9999999999999999985532210000 000122457999998753
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.19 E-value=9e-12 Score=83.11 Aligned_cols=42 Identities=38% Similarity=0.896 Sum_probs=30.7
Q ss_pred cccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccc
Q 023737 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~C 109 (278)
||||+++|.+ |++++|||+||+.||.++ |+..+.. .+.||.|
T Consensus 1 CpiC~~~~~~----Pv~l~CGH~FC~~Cl~~~-~~~~~~~--------~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD----PVSLPCGHSFCRSCLERL-WKEPSGS--------GFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS----EEE-SSSSEEEHHHHHHH-HCCSSSS--------T---SSS
T ss_pred CCccchhhCC----ccccCCcCHHHHHHHHHH-HHccCCc--------CCCCcCC
Confidence 8999999999 999999999999999998 5433211 2579987
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.06 E-value=1.9e-10 Score=82.18 Aligned_cols=62 Identities=19% Similarity=0.133 Sum_probs=51.8
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCcchHHH
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYYL 131 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~N~~l 131 (278)
++.||||.+.+.+ |++++|||+||+.|+.+|..... .||.|+.... ..++.+|..+
T Consensus 1 ~~~Cpi~~~~~~~----Pv~~~~G~v~~~~~i~~~~~~~~-------------~cP~~~~~~~-------~~~l~~~~~l 56 (63)
T smart00504 1 EFLCPISLEVMKD----PVILPSGQTYERRAIEKWLLSHG-------------TDPVTGQPLT-------HEDLIPNLAL 56 (63)
T ss_pred CcCCcCCCCcCCC----CEECCCCCEEeHHHHHHHHHHCC-------------CCCCCcCCCC-------hhhceeCHHH
Confidence 4689999999999 99999999999999999965421 5999998764 5677888888
Q ss_pred HHHHHH
Q 023737 132 LWMVES 137 (278)
Q Consensus 132 ~~lve~ 137 (278)
++.+++
T Consensus 57 ~~~i~~ 62 (63)
T smart00504 57 KSAIQE 62 (63)
T ss_pred HHHHHh
Confidence 887763
No 4
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=1.3e-10 Score=111.57 Aligned_cols=74 Identities=27% Similarity=0.500 Sum_probs=61.0
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
....+++.+.|+||.+.|.+ |++++|||+||..|+..++.... .||.|+.... ...
T Consensus 19 ~l~~Le~~l~C~IC~d~~~~----PvitpCgH~FCs~CI~~~l~~~~-------------~CP~Cr~~~~-------~~~ 74 (397)
T TIGR00599 19 SLYPLDTSLRCHICKDFFDV----PVLTSCSHTFCSLCIRRCLSNQP-------------KCPLCRAEDQ-------ESK 74 (397)
T ss_pred cccccccccCCCcCchhhhC----ccCCCCCCchhHHHHHHHHhCCC-------------CCCCCCCccc-------ccc
Confidence 34678889999999999999 99999999999999999854321 5999998754 456
Q ss_pred CcchHHHHHHHHHHhccc
Q 023737 125 PQKNYYLLWMVESMNGDR 142 (278)
Q Consensus 125 ~~~N~~l~~lve~~~~~~ 142 (278)
++.|+.+.++++.++..+
T Consensus 75 Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 75 LRSNWLVSEIVESFKNLR 92 (397)
T ss_pred CccchHHHHHHHHHHHhh
Confidence 788999999998876433
No 5
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.99 E-value=2.7e-10 Score=76.36 Aligned_cols=34 Identities=53% Similarity=1.133 Sum_probs=23.9
Q ss_pred cccccccccccCCCcEEecCCCcchHHHHHHHHHh
Q 023737 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRA 89 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~ 89 (278)
||||.+ |.+.+|.|++|+|||+||++|+.++...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 8888999999999999999999998554
No 6
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.98 E-value=2e-10 Score=106.48 Aligned_cols=73 Identities=29% Similarity=0.503 Sum_probs=62.8
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
+...+++.+.|.||.++|+. |+++||||+||.-||+..+.... .||.|+.... ...
T Consensus 16 slk~lD~lLRC~IC~eyf~i----p~itpCsHtfCSlCIR~~L~~~p-------------~CP~C~~~~~-------Es~ 71 (442)
T KOG0287|consen 16 SLKTLDDLLRCGICFEYFNI----PMITPCSHTFCSLCIRKFLSYKP-------------QCPTCCVTVT-------ESD 71 (442)
T ss_pred hhhhhHHHHHHhHHHHHhcC----ceeccccchHHHHHHHHHhccCC-------------CCCceecccc-------hhh
Confidence 45677899999999999999 99999999999999999865533 5999998876 778
Q ss_pred CcchHHHHHHHHHHhcc
Q 023737 125 PQKNYYLLWMVESMNGD 141 (278)
Q Consensus 125 ~~~N~~l~~lve~~~~~ 141 (278)
++.|+.+.++++.++-.
T Consensus 72 Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 72 LRNNRILDEIVKSLNFA 88 (442)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 89999999999887643
No 7
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.96 E-value=5.8e-10 Score=82.91 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=54.7
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCcchHH
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYY 130 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~N~~ 130 (278)
+.+.|||+.+++.+ |+++++||+|++.||+.|+.... ..||.|+.... ...+..|..
T Consensus 3 ~~f~CpIt~~lM~d----PVi~~~G~tyer~~I~~~l~~~~------------~~~P~t~~~l~-------~~~l~pn~~ 59 (73)
T PF04564_consen 3 DEFLCPITGELMRD----PVILPSGHTYERSAIERWLEQNG------------GTDPFTRQPLS-------ESDLIPNRA 59 (73)
T ss_dssp GGGB-TTTSSB-SS----EEEETTSEEEEHHHHHHHHCTTS------------SB-TTT-SB-S-------GGGSEE-HH
T ss_pred cccCCcCcCcHhhC----ceeCCcCCEEcHHHHHHHHHcCC------------CCCCCCCCcCC-------cccceECHH
Confidence 67999999999999 99999999999999999965522 26999998765 567889999
Q ss_pred HHHHHHHHhcccC
Q 023737 131 LLWMVESMNGDRS 143 (278)
Q Consensus 131 l~~lve~~~~~~~ 143 (278)
++..++.+..+++
T Consensus 60 Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 60 LKSAIEEWCAENK 72 (73)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcc
Confidence 9999999887653
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.92 E-value=6.4e-10 Score=74.47 Aligned_cols=43 Identities=35% Similarity=0.801 Sum_probs=35.2
Q ss_pred ccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 110 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR 110 (278)
+|+||++.+.. +...+.++|||.||.+|+.+|+..+. .||.||
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~~~-------------~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKRNN-------------SCPVCR 44 (44)
T ss_dssp CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHHSS-------------B-TTTH
T ss_pred CCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHhCC-------------cCCccC
Confidence 69999999976 33477889999999999999976533 699997
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.83 E-value=1.8e-09 Score=70.55 Aligned_cols=31 Identities=39% Similarity=0.989 Sum_probs=27.0
Q ss_pred cccccccccccCCCc-EEecCCCcchHHHHHHHHHh
Q 023737 55 CPICWESFNVVENLP-YVLWCGHTLCKNCVLGLQRA 89 (278)
Q Consensus 55 CpIC~e~f~~~~~~P-~~L~CGHtFC~~CL~~~~~~ 89 (278)
|+||++.+.+ | +.++|||+||++|+.+++..
T Consensus 1 C~iC~~~~~~----~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRD----PVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SS----EEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCcccC----cCEECCCCCchhHHHHHHHHHC
Confidence 8999999999 9 56799999999999998655
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.78 E-value=4.4e-09 Score=72.33 Aligned_cols=47 Identities=36% Similarity=0.762 Sum_probs=37.7
Q ss_pred CccccccccccccccCCCcEEecCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
|+..|.||++...+ ++.++|||. ||..|+.++..... .||.||+.+.
T Consensus 1 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~-------------~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKK-------------KCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTS-------------BBTTTTBB-S
T ss_pred CcCCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCC-------------CCCcCChhhc
Confidence 46789999999988 888899999 99999999855322 6999998753
No 11
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=4.5e-09 Score=93.56 Aligned_cols=71 Identities=32% Similarity=0.620 Sum_probs=57.7
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
....++.+.|+||++.|.+ |++++|||+||..|+..+ |. . .+.||.||. .. ..+
T Consensus 7 ~~~~~~~~~C~iC~~~~~~----p~~l~C~H~~c~~C~~~~-~~-~-----------~~~Cp~cr~-~~--------~~~ 60 (386)
T KOG2177|consen 7 LEVLQEELTCPICLEYFRE----PVLLPCGHNFCRACLTRS-WE-G-----------PLSCPVCRP-PS--------RNL 60 (386)
T ss_pred hhhccccccChhhHHHhhc----CccccccchHhHHHHHHh-cC-C-----------CcCCcccCC-ch--------hcc
Confidence 4566789999999999999 988899999999999987 33 1 247999995 32 255
Q ss_pred cchHHHHHHHHHHhccc
Q 023737 126 QKNYYLLWMVESMNGDR 142 (278)
Q Consensus 126 ~~N~~l~~lve~~~~~~ 142 (278)
..|..+.++++...+..
T Consensus 61 ~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 61 RPNVLLANLVERLRQLR 77 (386)
T ss_pred CccHHHHHHHHHHHhcC
Confidence 68999999998887654
No 12
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=3.6e-09 Score=71.04 Aligned_cols=44 Identities=34% Similarity=0.875 Sum_probs=35.1
Q ss_pred ccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
.|++|++.| +.++.|++++|||+||.+|+.+.. . ..+.||.||+
T Consensus 1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~---~----------~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK---G----------KSVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc---C----------CCCCCcCCCC
Confidence 599999999 335558899999999999999874 1 1337999984
No 13
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.77 E-value=8.9e-10 Score=79.32 Aligned_cols=62 Identities=31% Similarity=0.633 Sum_probs=33.9
Q ss_pred CCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCc
Q 023737 48 SREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 126 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 126 (278)
.+++.+.|++|.+.+++ |+.+ .|.|.||..|+... .++ .||+|+.+.- .++.+
T Consensus 3 ~le~lLrCs~C~~~l~~----pv~l~~CeH~fCs~Ci~~~------~~~---------~CPvC~~Paw-------~qD~~ 56 (65)
T PF14835_consen 3 RLEELLRCSICFDILKE----PVCLGGCEHIFCSSCIRDC------IGS---------ECPVCHTPAW-------IQDIQ 56 (65)
T ss_dssp HHHHTTS-SSS-S--SS-----B---SSS--B-TTTGGGG------TTT---------B-SSS--B-S--------SS--
T ss_pred HHHHhcCCcHHHHHhcC----CceeccCccHHHHHHhHHh------cCC---------CCCCcCChHH-------HHHHH
Confidence 35678999999999999 9987 99999999999652 111 5999998865 68888
Q ss_pred chHHHHHHH
Q 023737 127 KNYYLLWMV 135 (278)
Q Consensus 127 ~N~~l~~lv 135 (278)
.|..+.+|+
T Consensus 57 ~NrqLd~~i 65 (65)
T PF14835_consen 57 INRQLDSMI 65 (65)
T ss_dssp --HHHHHHH
T ss_pred hhhhhhccC
Confidence 999888774
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.6e-09 Score=90.43 Aligned_cols=52 Identities=29% Similarity=0.742 Sum_probs=42.8
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+....||||++.+.+ .+|+...|||.||+.||+..+.... .||+|++.+.
T Consensus 127 ~~~~~~~CPiCl~~~se--k~~vsTkCGHvFC~~Cik~alk~~~-------------~CP~C~kkIt 178 (187)
T KOG0320|consen 127 RKEGTYKCPICLDSVSE--KVPVSTKCGHVFCSQCIKDALKNTN-------------KCPTCRKKIT 178 (187)
T ss_pred ccccccCCCceecchhh--ccccccccchhHHHHHHHHHHHhCC-------------CCCCcccccc
Confidence 44567999999999887 4588889999999999999866554 5999998653
No 15
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=9.3e-09 Score=91.30 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=43.0
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
....+.|.||++.-.+ |+++.|||-||+.||.+|+..... ...||+|+..+
T Consensus 44 ~~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~----------~~~cPVCK~~V 94 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPN----------SKECPVCKAEV 94 (230)
T ss_pred CCCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCC----------CeeCCcccccc
Confidence 4568999999999999 999999999999999999765442 22699999764
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.72 E-value=7.6e-09 Score=67.95 Aligned_cols=40 Identities=40% Similarity=1.056 Sum_probs=33.7
Q ss_pred cccccccccccCCCcE-EecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccc
Q 023737 55 CPICWESFNVVENLPY-VLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~-~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~C 109 (278)
|+||.+.+.+ |. +++|||+||..|+.+++.... ...||.|
T Consensus 1 C~iC~~~~~~----~~~~~~C~H~fC~~C~~~~~~~~~-----------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED----PVILLPCGHSFCRDCLRKWLENSG-----------SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS----EEEETTTSEEEEHHHHHHHHHHTS-----------SSBTTTT
T ss_pred CCcCCccccC----CCEEecCCCcchHHHHHHHHHhcC-----------CccCCcC
Confidence 8999999999 98 779999999999999965421 3369987
No 17
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.72 E-value=8.4e-09 Score=93.03 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=39.8
Q ss_pred CCccccccccccccccC----CCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVVE----NLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~----~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.++.+|+||++.+.+.+ .++++++|||.||..|+.+|+.... .||.||....
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-------------tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-------------TCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-------------CCCCCCCEee
Confidence 45689999999877632 1345669999999999999864322 6999998753
No 18
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.67 E-value=1.3e-08 Score=92.94 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=56.8
Q ss_pred cccccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCC
Q 023737 43 ASLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNL 122 (278)
Q Consensus 43 ~s~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~ 122 (278)
..+...++..+.|.||.+.+.. |..++|||+||.-||+.++.... .||.||.... .
T Consensus 16 IPSL~~LDs~lrC~IC~~~i~i----p~~TtCgHtFCslCIR~hL~~qp-------------~CP~Cr~~~~-------e 71 (391)
T COG5432 16 IPSLKGLDSMLRCRICDCRISI----PCETTCGHTFCSLCIRRHLGTQP-------------FCPVCREDPC-------E 71 (391)
T ss_pred CcchhcchhHHHhhhhhheeec----ceecccccchhHHHHHHHhcCCC-------------CCccccccHH-------h
Confidence 3345677889999999999999 99999999999999999854322 6999998765 4
Q ss_pred CCCcchHHHHHHHHHHh
Q 023737 123 KFPQKNYYLLWMVESMN 139 (278)
Q Consensus 123 ~~~~~N~~l~~lve~~~ 139 (278)
..++.+....++.|.+.
T Consensus 72 srlr~~s~~~ei~es~~ 88 (391)
T COG5432 72 SRLRGSSGSREINESHA 88 (391)
T ss_pred hhcccchhHHHHHHhhh
Confidence 55566666666665543
No 19
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.7e-08 Score=92.18 Aligned_cols=52 Identities=27% Similarity=0.603 Sum_probs=43.0
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....+...+|.+|++...+ |--+||||.||+.||.+|..+.. .||.||....
T Consensus 233 ~~i~~a~~kC~LCLe~~~~----pSaTpCGHiFCWsCI~~w~~ek~-------------eCPlCR~~~~ 284 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSN----PSATPCGHIFCWSCILEWCSEKA-------------ECPLCREKFQ 284 (293)
T ss_pred ccCCCCCCceEEEecCCCC----CCcCcCcchHHHHHHHHHHcccc-------------CCCcccccCC
Confidence 3344566899999999999 99999999999999999854433 5999998753
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.56 E-value=5e-08 Score=86.33 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=41.8
Q ss_pred cCCCCccccccccccccc----cCCC-cEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNV----VENL-PYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~----~~~~-P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....++.+|+||+|...+ .+++ ++..+|+|.||..|+..|.......+ ....||.||..+.
T Consensus 165 ~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~-------~~rsCPiCR~~f~ 230 (242)
T PHA02926 165 YRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETG-------ASDNCPICRTRFR 230 (242)
T ss_pred HhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccC-------cCCcCCCCcceee
Confidence 344567899999998654 2332 44449999999999999854322111 1336999998864
No 21
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.51 E-value=9.3e-08 Score=62.44 Aligned_cols=43 Identities=44% Similarity=0.997 Sum_probs=34.4
Q ss_pred ccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 54 ECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
+|+||.+.+.+ +..+ +|||.||..|+.+|.... ...||.|+..
T Consensus 1 ~C~iC~~~~~~----~~~~~~C~H~~c~~C~~~~~~~~------------~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFRE----PVVLLPCGHVFCRSCIDKWLKSG------------KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhC----ceEecCCCChhcHHHHHHHHHhC------------cCCCCCCCCc
Confidence 59999999966 7777 599999999999985541 1269999864
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.35 E-value=4.2e-07 Score=57.23 Aligned_cols=30 Identities=47% Similarity=1.131 Sum_probs=26.9
Q ss_pred cccccccccccCCCcEEecCCCcchHHHHHHHHH
Q 023737 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQR 88 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~ 88 (278)
|+||.+.... ++.++|||.||..|+.+|..
T Consensus 1 C~iC~~~~~~----~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEELKD----PVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCCCC----cEEecCCChHHHHHHHHHHH
Confidence 7899999777 99999999999999999854
No 23
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.6e-07 Score=86.24 Aligned_cols=48 Identities=27% Similarity=0.563 Sum_probs=40.9
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.+|.||+|.|..++.+- .|||+|.|+.+|+..|+....+ .||.|+..+
T Consensus 230 ~~CaIClEdY~~GdklR-iLPC~H~FH~~CIDpWL~~~r~------------~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLR-ILPCSHKFHVNCIDPWLTQTRT------------FCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeee-EecCCCchhhccchhhHhhcCc------------cCCCCCCcC
Confidence 59999999999988755 4999999999999999876542 599998754
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.23 E-value=1e-06 Score=65.53 Aligned_cols=44 Identities=32% Similarity=0.737 Sum_probs=32.9
Q ss_pred ccccccccccc--------cCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccc
Q 023737 54 ECPICWESFNV--------VENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 110 (278)
Q Consensus 54 ~CpIC~e~f~~--------~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR 110 (278)
.|+||++.+.+ ++..++.+ +|||.|+..||.+|+..+. .||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-------------~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-------------TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-------------B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-------------cCCCCC
Confidence 49999999944 13356665 8999999999999965433 699997
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.3e-07 Score=81.07 Aligned_cols=48 Identities=29% Similarity=0.643 Sum_probs=40.2
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHHHHH-HHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLG-LQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~-~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+.+.+|.||.+.... |..++|||.||..||.. |..+.. -.||.||...
T Consensus 213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~------------~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKY------------EFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCC----cccccccchhhHHHHHHHHHhhcc------------ccCchhhhhc
Confidence 457899999999999 99999999999999998 533322 2599999875
No 26
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.9e-07 Score=87.72 Aligned_cols=51 Identities=31% Similarity=0.706 Sum_probs=41.5
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+..||||++...- |.++.|||.||..||..+ |...+.. ....||.|+..+.
T Consensus 186 ~~~CPICL~~~~~----p~~t~CGHiFC~~CiLqy-~~~s~~~-------~~~~CPiC~s~I~ 236 (513)
T KOG2164|consen 186 DMQCPICLEPPSV----PVRTNCGHIFCGPCILQY-WNYSAIK-------GPCSCPICRSTIT 236 (513)
T ss_pred CCcCCcccCCCCc----ccccccCceeeHHHHHHH-Hhhhccc-------CCccCCchhhhcc
Confidence 7899999999998 999999999999999998 5433212 2458999998754
No 27
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.2e-06 Score=81.17 Aligned_cols=74 Identities=41% Similarity=0.745 Sum_probs=62.6
Q ss_pred ccccccccccccc--cCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCcchH
Q 023737 52 GLECPICWESFNV--VENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNY 129 (278)
Q Consensus 52 ~l~CpIC~e~f~~--~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~N~ 129 (278)
.++|.||.+.|.. ++|.|+.|.|||++|..|+..+.... .+.||+||..+. .+.+..+.+.+|+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~------------~i~cpfcR~~~~--~~~~~~~~l~kNf 68 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS------------RILCPFCRETTE--IPDGDVKSLQKNF 68 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCc------------eeeccCCCCccc--CCchhHhhhhhhH
Confidence 4689999999998 59999999999999999998874332 457999999874 6667788999999
Q ss_pred HHHHHHHHHh
Q 023737 130 YLLWMVESMN 139 (278)
Q Consensus 130 ~l~~lve~~~ 139 (278)
.+...++.+.
T Consensus 69 ~ll~~~~~~~ 78 (296)
T KOG4185|consen 69 ALLQAIEHMK 78 (296)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 28
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1e-06 Score=82.59 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=43.4
Q ss_pred ccCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...+...+.|+||++++.. -++. .|+|.||..||...+....+ .||+||+..
T Consensus 37 l~~~~~~v~c~icl~llk~----tmttkeClhrfc~~ci~~a~r~gn~------------ecptcRk~l 89 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKK----TMTTKECLHRFCFDCIWKALRSGNN------------ECPTCRKKL 89 (381)
T ss_pred HHHhhhhhccHHHHHHHHh----hcccHHHHHHHHHHHHHHHHHhcCC------------CCchHHhhc
Confidence 4566778999999999999 7777 89999999999877665443 699999875
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.99 E-value=6.6e-06 Score=62.80 Aligned_cols=53 Identities=25% Similarity=0.512 Sum_probs=40.8
Q ss_pred Cccccccccccccc--------cCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNV--------VENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~--------~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++..|+||...|+. ++.-|.++ .|+|.|+..||.+|+......+ .||.||+..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~----------~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKG----------QCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCC----------CCCCcCCee
Confidence 35678888888884 45668888 9999999999999976532211 699999875
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=3.6e-06 Score=78.43 Aligned_cols=51 Identities=31% Similarity=0.502 Sum_probs=33.6
Q ss_pred cccccccccc-ccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWES-FNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~-f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+..||+|... +...+..-.+-+|||.||..|+... |... ...||.|+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l-~~~~-----------~~~CP~C~~~lr 54 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLL-FVRG-----------SGSCPECDTPLR 54 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHH-hcCC-----------CCCCCCCCCccc
Confidence 4689999993 4441111122279999999999997 3322 116999987653
No 31
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.94 E-value=8.8e-06 Score=78.27 Aligned_cols=87 Identities=26% Similarity=0.498 Sum_probs=64.2
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCC-----------------------------
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQ----------------------------- 99 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~----------------------------- 99 (278)
+||+++|+||...|.+ |++|+|||+.|+.|....+..... ++.|..
T Consensus 1 meeelkc~vc~~f~~e----piil~c~h~lc~~ca~~~~~~tp~-~~spq~~~aa~s~vs~~~~~~~d~msl~~~ad~g~ 75 (699)
T KOG4367|consen 1 MEEELKCPVCGSFYRE----PIILPCSHNLCQACARNILVQTPE-SESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGY 75 (699)
T ss_pred CcccccCceehhhccC----ceEeecccHHHHHHHHhhcccCCC-CCCchhhhhcCCCCCccccccccceeeEeeccCCC
Confidence 4789999999999999 999999999999999876433211 111100
Q ss_pred -------------------------------------------CCCcccccccccccccccccCCCCCCcchHHHHHHHH
Q 023737 100 -------------------------------------------LPFFITCPWCNMVSLRLICKGNLKFPQKNYYLLWMVE 136 (278)
Q Consensus 100 -------------------------------------------~~~~i~CP~CR~~~~~~~~~~~~~~~~~N~~l~~lve 136 (278)
....+.||.|.+.. +.-+..+...++|..+..+++
T Consensus 76 ~~~~~~a~~~~t~~~~~~~g~~~~p~am~pp~t~l~~~lap~~~~~~i~c~~c~rs~--~~dd~~l~~~p~n~~le~vi~ 153 (699)
T KOG4367|consen 76 GSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSL--ILDDRGLRGFPKNRVLEGVID 153 (699)
T ss_pred CccCCeeecCCCccccCCCCceeCCCCCCCchhhccccccCCCCCceEEcchhhhhe--EecccccccCchhhHHHHHHH
Confidence 00124699998854 355667888899999999999
Q ss_pred HHhccc
Q 023737 137 SMNGDR 142 (278)
Q Consensus 137 ~~~~~~ 142 (278)
.+++..
T Consensus 154 ryq~s~ 159 (699)
T KOG4367|consen 154 RYQQSK 159 (699)
T ss_pred HHhhhh
Confidence 887544
No 32
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=7.8e-06 Score=77.25 Aligned_cols=51 Identities=27% Similarity=0.539 Sum_probs=42.0
Q ss_pred CCcccccccccccccc---------CCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVV---------ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~---------~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.++-.|.||.+.+... +..|+.|||||.++..|++.|+.+.. .||.||.+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-------------TCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-------------TCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-------------CCCcccCcc
Confidence 4567899999985442 34579999999999999999987755 699999874
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=1.2e-05 Score=74.29 Aligned_cols=52 Identities=29% Similarity=0.580 Sum_probs=42.1
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
-.-+.+|.||.+.|..+++ -+++||.|.|+..|+.+|+..... .||+||...
T Consensus 320 a~~GveCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~~------------~CPvCrt~i 371 (374)
T COG5540 320 ADKGVECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYSN------------KCPVCRTAI 371 (374)
T ss_pred cCCCceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhcc------------cCCccCCCC
Confidence 3456899999999987665 667799999999999999764332 599999764
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=8.9e-06 Score=81.72 Aligned_cols=51 Identities=29% Similarity=0.531 Sum_probs=42.8
Q ss_pred CCCccccccccccccc-cCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 49 REEGLECPICWESFNV-VENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~-~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
......|+||.|.+.. .+..|..++|||.||..|+.+|+.+.. .||.||..
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-------------tCP~CR~~ 339 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-------------TCPTCRTV 339 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-------------cCCcchhh
Confidence 3457899999999998 344578899999999999999988754 69999983
No 35
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.75 E-value=1.5e-05 Score=74.30 Aligned_cols=69 Identities=22% Similarity=0.395 Sum_probs=52.9
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCC--CC
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGN--LK 123 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~--~~ 123 (278)
.......+|.+|..+|.+ +.+. .|-||||+.||.+.+.... .||.|...+. +. ..
T Consensus 10 ~~~n~~itC~LC~GYliD----ATTI~eCLHTFCkSCivk~l~~~~-------------~CP~C~i~ih-----~t~pl~ 67 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYLID----ATTITECLHTFCKSCIVKYLEESK-------------YCPTCDIVIH-----KTHPLL 67 (331)
T ss_pred hhcccceehhhccceeec----chhHHHHHHHHHHHHHHHHHHHhc-------------cCCccceecc-----Cccccc
Confidence 456688999999999999 8888 8999999999999877633 6999987543 21 34
Q ss_pred CCcchHHHHHHHHH
Q 023737 124 FPQKNYYLLWMVES 137 (278)
Q Consensus 124 ~~~~N~~l~~lve~ 137 (278)
.++.+..+..++-+
T Consensus 68 ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 68 NIRSDRTLQDIVYK 81 (331)
T ss_pred cCCcchHHHHHHHH
Confidence 45566667666643
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.4e-05 Score=77.11 Aligned_cols=52 Identities=25% Similarity=0.585 Sum_probs=42.9
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
......+++|.||...+.. |++++|||+||..||.+.+.... .||.||....
T Consensus 78 ~~~~~sef~c~vc~~~l~~----pv~tpcghs~c~~Cl~r~ld~~~-------------~cp~Cr~~l~ 129 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYP----PVVTPCGHSFCLECLDRSLDQET-------------ECPLCRDELV 129 (398)
T ss_pred CccccchhhhhhhHhhcCC----CccccccccccHHHHHHHhccCC-------------CCcccccccc
Confidence 3444789999999999999 99999999999999988644222 6999998754
No 37
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.2e-05 Score=81.82 Aligned_cols=53 Identities=26% Similarity=0.572 Sum_probs=43.1
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.....++.+.||+|..-+.+ .++..|||.||..|+.+...... -.||.|...+
T Consensus 636 Elk~yK~~LkCs~Cn~R~Kd----~vI~kC~H~FC~~Cvq~r~etRq------------RKCP~Cn~aF 688 (698)
T KOG0978|consen 636 ELKEYKELLKCSVCNTRWKD----AVITKCGHVFCEECVQTRYETRQ------------RKCPKCNAAF 688 (698)
T ss_pred HHHHHHhceeCCCccCchhh----HHHHhcchHHHHHHHHHHHHHhc------------CCCCCCCCCC
Confidence 34566789999999999999 88889999999999998743322 2699998775
No 38
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=2.6e-05 Score=71.92 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=40.0
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+|+||++..+- |+.+.|+|.||.-||++..|...+ .|+.||.++.
T Consensus 7 ~~eC~IC~nt~n~----Pv~l~C~HkFCyiCiKGsy~ndk~------------~CavCR~pid 53 (324)
T KOG0824|consen 7 KKECLICYNTGNC----PVNLYCFHKFCYICIKGSYKNDKK------------TCAVCRFPID 53 (324)
T ss_pred CCcceeeeccCCc----CccccccchhhhhhhcchhhcCCC------------CCceecCCCC
Confidence 4589999998888 999999999999999988665442 6999998864
No 39
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.47 E-value=6.5e-05 Score=65.67 Aligned_cols=50 Identities=24% Similarity=0.593 Sum_probs=40.2
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+--+.|.||.+-|.. |++..|||.||..|..+-..+.. .|-.|.+.+.
T Consensus 192 ~e~IPF~C~iCKkdy~s----pvvt~CGH~FC~~Cai~~y~kg~-------------~C~~Cgk~t~ 241 (259)
T COG5152 192 GEKIPFLCGICKKDYES----PVVTECGHSFCSLCAIRKYQKGD-------------ECGVCGKATY 241 (259)
T ss_pred CCCCceeehhchhhccc----hhhhhcchhHHHHHHHHHhccCC-------------cceecchhhc
Confidence 33446789999999999 99999999999999976533322 6999998764
No 40
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.43 E-value=6.6e-05 Score=55.41 Aligned_cols=61 Identities=25% Similarity=0.483 Sum_probs=27.0
Q ss_pred ccccccccccccccCCCcEEe----cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVL----WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L----~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+.+|+||+....+.+..|... .|++.|+..||.+|+....+... .-.+....||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~--~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQ--SFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS---TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCe--eecccccCCcCCCCeee
Confidence 578999999877544556554 59999999999999876543211 01122347999998753
No 41
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.40 E-value=0.00011 Score=67.95 Aligned_cols=66 Identities=26% Similarity=0.503 Sum_probs=46.9
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCcchHH
Q 023737 52 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQKNYY 130 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~N~~ 130 (278)
.|.|+.|..++.+ |+-+ .|||+||+.||...+..+. +.||.|...- ++ +..+..++.
T Consensus 274 ~LkCplc~~Llrn----p~kT~cC~~~fc~eci~~al~dsD------------f~CpnC~rkd--vl----ld~l~pD~d 331 (427)
T COG5222 274 SLKCPLCHCLLRN----PMKTPCCGHTFCDECIGTALLDSD------------FKCPNCSRKD--VL----LDGLTPDID 331 (427)
T ss_pred cccCcchhhhhhC----cccCccccchHHHHHHhhhhhhcc------------ccCCCccccc--ch----hhccCccHH
Confidence 4999999999999 9888 7899999999997655432 3699997631 22 334445555
Q ss_pred HHHHHHHHh
Q 023737 131 LLWMVESMN 139 (278)
Q Consensus 131 l~~lve~~~ 139 (278)
...-+|...
T Consensus 332 k~~EvE~~l 340 (427)
T COG5222 332 KKLEVEKAL 340 (427)
T ss_pred HHHHHHHHH
Confidence 555555443
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.35 E-value=9e-05 Score=71.64 Aligned_cols=51 Identities=22% Similarity=0.578 Sum_probs=39.6
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
..+.|..+||||++.++..-.--+...|.|+|...|+..| |.. +||+||..
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w-~~~--------------scpvcR~~ 220 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW-WDS--------------SCPVCRYC 220 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhc-ccC--------------cChhhhhh
Confidence 4567899999999999982222234499999999999998 432 59999964
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00011 Score=67.63 Aligned_cols=45 Identities=31% Similarity=0.656 Sum_probs=37.6
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+.|-||.+.|.+ |++..|||+||..|....+.+.. .|.+|.+.+.
T Consensus 242 f~c~icr~~f~~----pVvt~c~h~fc~~ca~~~~qk~~-------------~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYR----PVVTKCGHYFCEVCALKPYQKGE-------------KCYVCSQQTH 286 (313)
T ss_pred cccccccccccc----chhhcCCceeehhhhccccccCC-------------cceecccccc
Confidence 459999999999 99999999999999876533322 6999998764
No 44
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00027 Score=64.55 Aligned_cols=52 Identities=31% Similarity=0.673 Sum_probs=40.6
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.....+.+|++|.+.-.. |.+. +|||.+|-.|+.....-.. .+.||.|....
T Consensus 234 s~~t~~~~C~~Cg~~Pti----P~~~~~C~HiyCY~Ci~ts~~~~a-----------sf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTI----PHVIGKCGHIYCYYCIATSRLWDA-----------SFTCPLCGENV 286 (298)
T ss_pred ccccCCceeeccCCCCCC----Ceeeccccceeehhhhhhhhcchh-----------hcccCccCCCC
Confidence 344578899999999999 9999 6999999999986532211 34799998764
No 45
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.20 E-value=0.00023 Score=50.52 Aligned_cols=35 Identities=34% Similarity=0.614 Sum_probs=26.6
Q ss_pred CCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHH
Q 023737 49 REEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQ 87 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~ 87 (278)
..-.+.|||....|.+ |+.- .|||+|.++.|.+++
T Consensus 8 ~~~~~~CPiT~~~~~~----PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 8 GTISLKCPITLQPFED----PVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp SB--SB-TTTSSB-SS----EEEESSS--EEEHHHHHHHC
T ss_pred cEeccCCCCcCChhhC----CcCcCCCCCeecHHHHHHHH
Confidence 4567899999999999 9987 999999999999986
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00064 Score=64.62 Aligned_cols=59 Identities=27% Similarity=0.608 Sum_probs=39.6
Q ss_pred CCccccccccccccccC---C-CcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVVE---N-LPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~---~-~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+-+|.||.+...+.. + ..+..+|.|.||.+|+++|..... ... . -...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q-~~~-~----~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQ-FES-K----TSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhc-ccc-c----cccCCCcccCccc
Confidence 45789999999888721 1 122357999999999999842222 110 0 1237999998875
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00044 Score=66.30 Aligned_cols=54 Identities=26% Similarity=0.612 Sum_probs=43.7
Q ss_pred CCccccccccccccc-cCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNV-VENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~-~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+...+||||++.+.- ++|+=+.+.|||-|-..|+++|+-+ +. ...||.|.....
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k--~~---------~~~cp~c~~kat 56 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK--KT---------KMQCPLCSGKAT 56 (463)
T ss_pred CccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh--hh---------hhhCcccCChhH
Confidence 356799999999988 7888888899999999999999742 21 236999987643
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00073 Score=63.84 Aligned_cols=48 Identities=35% Similarity=0.678 Sum_probs=40.7
Q ss_pred CCccccccccccccccCCCcEEecCCC-cchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGH-TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGH-tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
++..+|-||+..-.+ -.+|||.| -.|..|.+.+...+. .||.||..+.
T Consensus 288 ~~gkeCVIClse~rd----t~vLPCRHLCLCs~Ca~~Lr~q~n-------------~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRD----TVVLPCRHLCLCSGCAKSLRYQTN-------------NCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcc----eEEecchhhehhHhHHHHHHHhhc-------------CCCccccchH
Confidence 568899999999999 88899999 589999998865444 5999998764
No 49
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00033 Score=63.94 Aligned_cols=52 Identities=27% Similarity=0.590 Sum_probs=38.6
Q ss_pred CccccccccccccccC------CCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVE------NLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~------~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++-.|.+|.+.++..+ ..-+.|.|+|.|.+.||++|-- ..|.. .||.|++..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci-vGKkq----------tCPYCKekV 280 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI-VGKKQ----------TCPYCKEKV 280 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee-ecCCC----------CCchHHHHh
Confidence 4557999999888732 1257899999999999999833 23323 599998765
No 50
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.74 E-value=0.0006 Score=66.06 Aligned_cols=50 Identities=32% Similarity=0.720 Sum_probs=42.0
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..+++.+.|++|...+.+ |... .|||.||..|+..|...+. .||.|+...
T Consensus 16 ~~~~~~l~C~~C~~vl~~----p~~~~~cgh~fC~~C~~~~~~~~~-------------~cp~~~~~~ 66 (391)
T KOG0297|consen 16 RPLDENLLCPICMSVLRD----PVQTTTCGHRFCAGCLLESLSNHQ-------------KCPVCRQEL 66 (391)
T ss_pred CCCcccccCccccccccC----CCCCCCCCCcccccccchhhccCc-------------CCccccccc
Confidence 347889999999999999 9995 9999999999999855422 599997653
No 51
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.00088 Score=67.42 Aligned_cols=71 Identities=35% Similarity=0.463 Sum_probs=49.7
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 126 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 126 (278)
.+..+.+.|+||++.|......|+.+.|||+.|+.|+.....+ .|| |...-. ...-..+...
T Consensus 6 ~~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---------------scp-~~~De~--~~~~~~~e~p 67 (861)
T KOG3161|consen 6 LKWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---------------SCP-TKRDED--SSLMQLKEEP 67 (861)
T ss_pred hhhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---------------cCC-CCcccc--chhcChhhcc
Confidence 3456788999999999887777999999999999999887322 477 433211 1112244556
Q ss_pred chHHHHHHH
Q 023737 127 KNYYLLWMV 135 (278)
Q Consensus 127 ~N~~l~~lv 135 (278)
.|+.++..+
T Consensus 68 ~n~alL~~~ 76 (861)
T KOG3161|consen 68 RNYALLRRE 76 (861)
T ss_pred hhHHHHHhh
Confidence 777776655
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.54 E-value=0.00084 Score=64.30 Aligned_cols=45 Identities=33% Similarity=0.620 Sum_probs=35.6
Q ss_pred ccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.|.||-|.=.+ -.+-||||-.|..|+..|+.... .-.||.||..+
T Consensus 371 LCKICaendKd----vkIEPCGHLlCt~CLa~WQ~sd~-----------gq~CPFCRcEI 415 (563)
T KOG1785|consen 371 LCKICAENDKD----VKIEPCGHLLCTSCLAAWQDSDE-----------GQTCPFCRCEI 415 (563)
T ss_pred HHHHhhccCCC----cccccccchHHHHHHHhhcccCC-----------CCCCCceeeEe
Confidence 48999998887 66679999999999999854332 11599999865
No 53
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.51 E-value=0.001 Score=65.80 Aligned_cols=54 Identities=20% Similarity=0.528 Sum_probs=42.6
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...++.+|.+|.+.-.+ ++...|.|.||+.|+.++...-.. + ..+.||.|....
T Consensus 532 enk~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~-~-------~nvtCP~C~i~L 585 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFME-N-------NNVTCPVCHIGL 585 (791)
T ss_pred cccCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhc-c-------cCCCCccccccc
Confidence 44578899999999999 999999999999999887544221 1 135899998764
No 54
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.00067 Score=50.64 Aligned_cols=50 Identities=26% Similarity=0.605 Sum_probs=39.6
Q ss_pred ccccccccccc--------cCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 54 ECPICWESFNV--------VENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 54 ~CpIC~e~f~~--------~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.|.||...|+. ++.-|.++ .|.|.|...||.+|+...... -.||.||+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq----------~~CPmcRq~~ 80 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQ----------GQCPMCRQTW 80 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcccc----------ccCCcchhee
Confidence 78888888876 57778888 899999999999986543322 2699999875
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.37 E-value=0.0017 Score=66.76 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=41.1
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCC
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGN 121 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~ 121 (278)
..-.||+|+..+.+++. ---.+|+|.||+.|+..|-.... .||.||..+.+++....
T Consensus 122 ~~~~CP~Ci~s~~DqL~-~~~k~c~H~FC~~Ci~sWsR~aq-------------TCPiDR~EF~~v~V~eS 178 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLE-ESEKHTAHYFCEECVGSWSRCAQ-------------TCPVDRGEFGEVKVLES 178 (1134)
T ss_pred hhhhhhHHHHHHHHHhh-ccccccccccHHHHhhhhhhhcc-------------cCchhhhhhheeeeecc
Confidence 45579999998888331 12238999999999999844333 69999998776665443
No 56
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0011 Score=46.52 Aligned_cols=45 Identities=33% Similarity=0.747 Sum_probs=35.1
Q ss_pred cccccccccccccCCCcEEecCCC-cchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGH-TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGH-tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.+|-||+|--.+ .+.-.||| -+|-.|-.+. |+.. .+ .||.||.++
T Consensus 8 dECTICye~pvd----sVlYtCGHMCmCy~Cg~rl-~~~~--~g---------~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVD----SVLYTCGHMCMCYACGLRL-KKAL--HG---------CCPICRAPI 53 (62)
T ss_pred cceeeeccCcch----HHHHHcchHHhHHHHHHHH-HHcc--CC---------cCcchhhHH
Confidence 589999998777 66669999 5899999887 4432 12 699999875
No 57
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.21 E-value=0.0058 Score=46.06 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=38.0
Q ss_pred cccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
-.|+-|..-...++.-|+.. .|.|.|...||.+|+.... .||.||+...
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~-------------~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKG-------------VCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCC-------------CCCCCCceeE
Confidence 35666776665667778888 8999999999999965422 5999998864
No 58
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.0026 Score=60.83 Aligned_cols=49 Identities=24% Similarity=0.472 Sum_probs=38.9
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
..|.||.+.+...+++.-+-.|||+|...|+..|+..... ...||.|+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps----------~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS----------NRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc----------cCCCCceee
Confidence 5799998888888887777789999999999998543221 126999993
No 59
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.78 E-value=0.011 Score=40.48 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=31.6
Q ss_pred ccccccccccccCCCcEEecCC-----CcchHHHHHHHHHhhccCCCCCCCCCCcccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCG-----HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCN 110 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CG-----HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR 110 (278)
.|-||++..+ +..|.+.||. |.+..+|+.+|+..+.+ ..||.|+
T Consensus 1 ~CrIC~~~~~--~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~-----------~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD--EGDPLVSPCRCKGSLKYVHQECLERWINESGN-----------KTCEICK 49 (49)
T ss_pred CccCCCCCCC--CCCeeEeccccCCchhHHHHHHHHHHHHHcCC-----------CcCCCCC
Confidence 4889998222 2337788985 77999999999765432 2699985
No 60
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0054 Score=60.29 Aligned_cols=53 Identities=23% Similarity=0.534 Sum_probs=38.3
Q ss_pred CCCcccccccccccccc-----CCC-------cEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVV-----ENL-------PYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~-----~~~-------P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.+....|+||....+.+ +.+ -+++ ||.|.|...|+++|+..- ++.||+||.+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y------------kl~CPvCR~pL 633 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY------------KLICPVCRCPL 633 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh------------cccCCccCCCC
Confidence 45667899999876652 111 2555 999999999999996521 23699999764
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.54 E-value=0.024 Score=53.75 Aligned_cols=62 Identities=29% Similarity=0.644 Sum_probs=46.0
Q ss_pred ccccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccC
Q 023737 44 SLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKG 120 (278)
Q Consensus 44 s~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~ 120 (278)
+.....+|...|-||-+-..- --.+||+|..|--|..+. ++--+.+ .||.||..+..+++.+
T Consensus 53 SaddtDEen~~C~ICA~~~TY----s~~~PC~H~~CH~Ca~Rl-RALY~~K----------~C~~CrTE~e~V~fT~ 114 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTY----SARYPCGHQICHACAVRL-RALYMQK----------GCPLCRTETEAVVFTA 114 (493)
T ss_pred cccccccccceeEEecCCceE----EEeccCCchHHHHHHHHH-HHHHhcc----------CCCccccccceEEEec
Confidence 334556788899999998887 677899999999999876 3333322 5999999876555543
No 62
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.19 E-value=0.0078 Score=63.18 Aligned_cols=53 Identities=25% Similarity=0.598 Sum_probs=38.7
Q ss_pred CCccccccccccccccCC-CcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVEN-LPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~-~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+..-+|+||+.+++.+++ .|--. .|.|-|+..|+.+|...+.. + .||.||..+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~-s----------~CPlCRsei 1522 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSAR-S----------NCPLCRSEI 1522 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCC-C----------CCCcccccc
Confidence 455689999999985332 34333 68999999999999665442 2 699999653
No 63
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.15 E-value=0.022 Score=52.10 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=40.8
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...+..+.|||....|+...+.-+..+|||.|+..++.+.. ... .||.|..++.
T Consensus 108 ~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~-------------~Cp~c~~~f~ 161 (260)
T PF04641_consen 108 DNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSK-------------KCPVCGKPFT 161 (260)
T ss_pred ccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccc-------------cccccCCccc
Confidence 34567899999999997644444444999999999999872 111 5999998864
No 64
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.09 E-value=0.021 Score=53.93 Aligned_cols=51 Identities=24% Similarity=0.632 Sum_probs=37.4
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
|+..||.|.+.++..+.--.-.+||...|+-|....... . .+ .||-||...
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-l--ng---------rcpacrr~y 63 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-L--NG---------RCPACRRKY 63 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-c--cC---------CChHhhhhc
Confidence 444599999999986554455699999999998776222 2 22 699999753
No 65
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.03 E-value=0.012 Score=40.22 Aligned_cols=46 Identities=26% Similarity=0.655 Sum_probs=21.7
Q ss_pred cccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 55 CPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
||+|.+.++.++.--.--+||+.+|..|....+... .+ .||-||+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~---~g---------~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE---GG---------RCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS----S---------B-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc---CC---------CCCCCCCC
Confidence 789999886644322223899999999998873311 11 69999975
No 66
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.016 Score=55.02 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=38.6
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.|+-.||||+---.. .+..||+|.-|..||.+.+-+.+ .|-.|+..+
T Consensus 420 sEd~lCpICyA~pi~----Avf~PC~H~SC~~CI~qHlmN~k-------------~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN----AVFAPCSHRSCYGCITQHLMNCK-------------RCFFCKTTV 466 (489)
T ss_pred cccccCcceecccch----hhccCCCCchHHHHHHHHHhcCC-------------eeeEeccee
Confidence 467889999987666 78889999999999999865543 599998764
No 67
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.79 E-value=0.0094 Score=57.17 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
+-++.|..|.+.+-.....-.-|||.|.|..+|+.+.+.++. .-+||.||+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-----------~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-----------TRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-----------CCCCccHHHH
Confidence 457899999999987444345679999999999999975543 1269999954
No 68
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.019 Score=54.54 Aligned_cols=46 Identities=24% Similarity=0.553 Sum_probs=34.9
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.+.....|-||.+...+ .+.++|||.-| |..-. ++. ..||+||..+
T Consensus 301 ~~~~p~lcVVcl~e~~~----~~fvpcGh~cc--ct~cs--~~l------------~~CPvCR~rI 346 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKS----AVFVPCGHVCC--CTLCS--KHL------------PQCPVCRQRI 346 (355)
T ss_pred ccCCCCceEEecCCccc----eeeecCCcEEE--chHHH--hhC------------CCCchhHHHH
Confidence 34456689999999999 89999999877 77653 111 1599999865
No 69
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.24 Score=44.49 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=43.9
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+..-.|..|...+..++ -+.|-|-|.|.++|+.++. ++.... +.|....||.|...+
T Consensus 48 DY~pNC~LC~t~La~gd--t~RLvCyhlfHW~Clnera-A~lPan----TAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGD--TTRLVCYHLFHWKCLNERA-ANLPAN----TAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCc--ceeehhhhhHHHHHhhHHH-hhCCCc----CCCCcccCCCCCCcc
Confidence 45668999999998877 6778999999999999973 323222 356677899998765
No 70
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.61 E-value=0.013 Score=41.18 Aligned_cols=43 Identities=35% Similarity=0.694 Sum_probs=30.3
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...|-.|...=.. ..+++|||..|..|.... +.+ .||.|...+
T Consensus 7 ~~~~~~~~~~~~~----~~~~pCgH~I~~~~f~~~-----rYn----------gCPfC~~~~ 49 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLPCGHLICDNCFPGE-----RYN----------GCPFCGTPF 49 (55)
T ss_pred ceeEEEccccccc----cccccccceeeccccChh-----hcc----------CCCCCCCcc
Confidence 3445555554444 889999999999998764 112 499998775
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.022 Score=51.59 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=40.9
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+....||+|.+.+.+.-...+.-+|||.+|.+|.+++..... .||+|..+.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-------------v~pv~d~pl 269 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-------------VDPVTDKPL 269 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-------------cccCCCCcC
Confidence 467899999999999665555559999999999999854433 699998764
No 72
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.0071 Score=55.93 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=35.1
Q ss_pred CccccccccccccccCCCcEEecCCC-cchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGH-TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGH-tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+...|.||++.-.+ -+.|+||| .-|-+|-.+. . .||.||+.+.
T Consensus 299 ~~~LC~ICmDaP~D----CvfLeCGHmVtCt~CGkrm----~-------------eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPRD----CVFLECGHMVTCTKCGKRM----N-------------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCcc----eEEeecCcEEeehhhcccc----c-------------cCchHHHHHH
Confidence 36789999999999 99999999 5688886554 1 5999998753
No 73
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.037 Score=51.22 Aligned_cols=47 Identities=28% Similarity=0.610 Sum_probs=32.2
Q ss_pred ccccccc-cccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 54 ECPICWE-SFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 54 ~CpIC~e-~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.||+|.. .|.+..-+-++-+|||+.|.+|+..++.... -.||.|...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~------------~~CpeC~~i 49 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP------------AQCPECMVI 49 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC------------CCCCcccch
Confidence 4888875 4444333333339999999999999855432 169999754
No 74
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.18 E-value=0.071 Score=49.99 Aligned_cols=63 Identities=21% Similarity=0.451 Sum_probs=44.3
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
...-+.++||||.+.+.. |+.- .=||..|..|-.+.. . .||.||... . .
T Consensus 43 ~~~~~lleCPvC~~~l~~----Pi~QC~nGHlaCssC~~~~~---~-------------~CP~Cr~~~---------g-~ 92 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSP----PIFQCDNGHLACSSCRTKVS---N-------------KCPTCRLPI---------G-N 92 (299)
T ss_pred ccchhhccCchhhccCcc----cceecCCCcEehhhhhhhhc---c-------------cCCcccccc---------c-c
Confidence 455688999999999997 6443 448999999986531 1 599999774 2 1
Q ss_pred cchHHHHHHHHHHh
Q 023737 126 QKNYYLLWMVESMN 139 (278)
Q Consensus 126 ~~N~~l~~lve~~~ 139 (278)
..++.+.+++|...
T Consensus 93 ~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 93 IRCRAMEKVAEAVL 106 (299)
T ss_pred HHHHHHHHHHHhce
Confidence 25566666666543
No 75
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.036 Score=53.29 Aligned_cols=55 Identities=27% Similarity=0.524 Sum_probs=42.0
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.....-+.|||=.+-=.+ ||-|++|.|||..|++-+.++..... ..+.||.|-..
T Consensus 329 ~~fHSvF~CPVlKeqtsd-eNPPm~L~CGHVISkdAlnrLS~ng~----------~sfKCPYCP~e 383 (394)
T KOG2817|consen 329 YHFHSVFICPVLKEQTSD-ENPPMMLICGHVISKDALNRLSKNGS----------QSFKCPYCPVE 383 (394)
T ss_pred ccccceeecccchhhccC-CCCCeeeeccceecHHHHHHHhhCCC----------eeeeCCCCCcc
Confidence 355678899997775554 88899999999999999999833221 14689999754
No 76
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.021 Score=55.17 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=41.9
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
......|.||.+.... .+.=+.+||+|.||+.|+..+.....+.+. -..+.||.+....
T Consensus 181 ~~slf~C~ICf~e~~G-~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~-----v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMG-QHCFKFLPCSHVFCKSCLKDYFTIQIQEGQ-----VSCLKCPDPKCGS 239 (445)
T ss_pred HhhcccceeeehhhcC-cceeeecccchHHHHHHHHHHHHHhhhcce-----eeeecCCCCCCcc
Confidence 3457889999998765 333566799999999999998765543222 1246798877653
No 77
>PHA03096 p28-like protein; Provisional
Probab=92.69 E-value=0.14 Score=47.76 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.2
Q ss_pred ccccccccccccc---CCCcEEe-cCCCcchHHHHHHHHHh
Q 023737 53 LECPICWESFNVV---ENLPYVL-WCGHTLCKNCVLGLQRA 89 (278)
Q Consensus 53 l~CpIC~e~f~~~---~~~P~~L-~CGHtFC~~CL~~~~~~ 89 (278)
-.|.||.+..... ++.=-+| .|.|.||..|++.|...
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 6799999976652 4333445 89999999999998554
No 78
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.68 E-value=0.17 Score=43.06 Aligned_cols=59 Identities=27% Similarity=0.490 Sum_probs=38.4
Q ss_pred CccccccccccccccCCCcEEecCC-C-cc-----------hHHHHHHHHHhhccCCCCCC------------------C
Q 023737 51 EGLECPICWESFNVVENLPYVLWCG-H-TL-----------CKNCVLGLQRAVIRLPTLPF------------------Q 99 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CG-H-tF-----------C~~CL~~~~~~~~~~~~~p~------------------~ 99 (278)
|+..||||+|.-.+ .+.|-|. | .= ..+|+++......+...... .
T Consensus 1 ed~~CpICme~PHN----AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T PF07800_consen 1 EDVTCPICMEHPHN----AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ 76 (162)
T ss_pred CCccCceeccCCCc----eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence 56799999999999 8888774 2 11 35899987554333221110 1
Q ss_pred CCCccccccccccc
Q 023737 100 LPFFITCPWCNMVS 113 (278)
Q Consensus 100 ~~~~i~CP~CR~~~ 113 (278)
....+.||.||..+
T Consensus 77 ~~~~L~CPLCRG~V 90 (162)
T PF07800_consen 77 EQPELACPLCRGEV 90 (162)
T ss_pred ccccccCccccCce
Confidence 12367899999875
No 79
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.60 E-value=0.087 Score=43.56 Aligned_cols=49 Identities=31% Similarity=0.666 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCcEEe----cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL----WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L----~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...+|.||.|.-.+ .+.| -||-+.|..|-..+ |+.... .-.||.|+...
T Consensus 79 ~lYeCnIC~etS~e----e~FLKPneCCgY~iCn~Cya~L-WK~~~~---------ypvCPvCkTSF 131 (140)
T PF05290_consen 79 KLYECNICKETSAE----ERFLKPNECCGYSICNACYANL-WKFCNL---------YPVCPVCKTSF 131 (140)
T ss_pred CceeccCcccccch----hhcCCcccccchHHHHHHHHHH-HHHccc---------CCCCCcccccc
Confidence 57899999999999 7777 39999999999987 876643 22799998764
No 80
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.79 E-value=0.076 Score=54.97 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=35.5
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..|++|.+ .+. ++...|||.||..|+........ ...||.||...
T Consensus 455 ~~c~ic~~-~~~----~~it~c~h~~c~~c~~~~i~~~~-----------~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LDS----FFITRCGHDFCVECLKKSIQQSE-----------NAPCPLCRNVL 499 (674)
T ss_pred cccccccc-ccc----ceeecccchHHHHHHHhcccccc-----------CCCCcHHHHHH
Confidence 79999999 777 88889999999999987633222 11699998754
No 81
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.36 E-value=0.21 Score=47.09 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=37.5
Q ss_pred CCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
..+.-.||+|+..-.+ |.++ --|-.||..|+-.+..+.. .||+=..+
T Consensus 297 ~~~~~~CpvClk~r~N----ptvl~vSGyVfCY~Ci~~Yv~~~~-------------~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQN----PTVLEVSGYVFCYPCIFSYVVNYG-------------HCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCC----CceEEecceEEeHHHHHHHHHhcC-------------CCCccCCc
Confidence 3456689999999999 9999 5599999999999866443 59976544
No 82
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=90.98 E-value=0.077 Score=54.50 Aligned_cols=52 Identities=31% Similarity=0.552 Sum_probs=41.5
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.+.-.++|+||...+.+ |..+.|-|.||..|+...++.... ...||.|+...
T Consensus 17 ~~~k~lEc~ic~~~~~~----p~~~kc~~~~l~~~~n~~f~~~~~----------~~~~~lc~~~~ 68 (684)
T KOG4362|consen 17 AMQKILECPICLEHVKE----PSLLKCDHIFLKFCLNKLFESKKG----------PKQCALCKSDI 68 (684)
T ss_pred HHhhhccCCceeEEeec----cchhhhhHHHHhhhhhceeeccCc----------cccchhhhhhh
Confidence 34567899999999999 988899999999999877654331 23699998554
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.97 E-value=0.079 Score=47.81 Aligned_cols=43 Identities=28% Similarity=0.778 Sum_probs=29.2
Q ss_pred cccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.-|..|...=.. .|..| .|+|.||..|.... . +. .||.|++.+
T Consensus 4 VhCn~C~~~~~~---~~f~LTaC~HvfC~~C~k~~----~--~~---------~C~lCkk~i 47 (233)
T KOG4739|consen 4 VHCNKCFRFPSQ---DPFFLTACRHVFCEPCLKAS----S--PD---------VCPLCKKSI 47 (233)
T ss_pred EEeccccccCCC---CceeeeechhhhhhhhcccC----C--cc---------cccccccee
Confidence 357766654331 26666 99999999998542 1 10 599999985
No 84
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.21 E-value=0.17 Score=49.12 Aligned_cols=40 Identities=35% Similarity=0.631 Sum_probs=29.5
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhh
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAV 90 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~ 90 (278)
...+|.||.......+..-.+..|+|.||..|+.+.....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 4678999995555533334467899999999999886544
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=0.11 Score=48.52 Aligned_cols=47 Identities=21% Similarity=0.437 Sum_probs=32.5
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLI 117 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~ 117 (278)
-.|.-|-.-+.. .-+|.+|.|.||.+|.+.- .. ..||.|...+.|+-
T Consensus 91 HfCd~Cd~PI~I---YGRmIPCkHvFCl~CAr~~---~d------------K~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 91 HFCDRCDFPIAI---YGRMIPCKHVFCLECARSD---SD------------KICPLCDDRVQRIE 137 (389)
T ss_pred EeecccCCccee---eecccccchhhhhhhhhcC---cc------------ccCcCcccHHHHHH
Confidence 347777665544 2467899999999998642 11 15999987776543
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.95 E-value=0.11 Score=40.27 Aligned_cols=36 Identities=22% Similarity=0.525 Sum_probs=27.0
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHH
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVL 84 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~ 84 (278)
....++-.|++|.+.+.. ..=.+.||||.++..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 345677889999999987 112233999999999975
No 87
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.78 E-value=0.26 Score=46.36 Aligned_cols=55 Identities=27% Similarity=0.532 Sum_probs=42.6
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
......+.||+=.+.-.+ ||-|+++.|||..=++-+..+..... ..+.||.|-..
T Consensus 331 ~hfHs~FiCPVlKe~~t~-ENpP~ml~CgHVIskeal~~LS~nG~----------~~FKCPYCP~~ 385 (396)
T COG5109 331 RHFHSLFICPVLKELCTD-ENPPVMLECGHVISKEALSVLSQNGV----------LSFKCPYCPEM 385 (396)
T ss_pred ccccceeeccccHhhhcc-cCCCeeeeccceeeHHHHHHHhhcCc----------EEeeCCCCCcc
Confidence 366788999997776665 88999999999999999988733221 25689999654
No 88
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=0.17 Score=53.01 Aligned_cols=29 Identities=28% Similarity=0.825 Sum_probs=27.1
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHHHHH
Q 023737 52 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVL 84 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~ 84 (278)
.-.|..|.-.++. |.+- .|||+|++.|+.
T Consensus 840 ~skCs~C~~~Ldl----P~VhF~CgHsyHqhC~e 869 (933)
T KOG2114|consen 840 VSKCSACEGTLDL----PFVHFLCGHSYHQHCLE 869 (933)
T ss_pred eeeecccCCcccc----ceeeeecccHHHHHhhc
Confidence 4689999999999 9998 999999999998
No 89
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.09 E-value=0.2 Score=46.41 Aligned_cols=47 Identities=32% Similarity=0.606 Sum_probs=38.7
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
...||+|.+.+......|..++|||.....|++..-..+ ..||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-------------y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-------------YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-------------CCCCcccc
Confidence 445999999999988889999999999999998863221 37999986
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=0.17 Score=46.79 Aligned_cols=49 Identities=35% Similarity=0.670 Sum_probs=39.8
Q ss_pred ccccccccccccc--cCCCcEEec--------CCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 52 GLECPICWESFNV--VENLPYVLW--------CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 52 ~l~CpIC~e~f~~--~~~~P~~L~--------CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
...|.+|...|.. ...+|.++. |||+.|..|+...+.... +.||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~------------~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG------------IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh------------hcCCcccce
Confidence 3569999999993 677899998 999999999998755432 379999874
No 91
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=87.15 E-value=0.7 Score=51.34 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=43.2
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLI 117 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~ 117 (278)
-+.+..|-||...--.. --.+.|.|+|.|...|.+..+.+... -|+..-+++.||.|..++..++
T Consensus 3483 QD~DDmCmICFTE~L~A-AP~IqL~C~HiFHlqC~R~vLE~RW~---GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSA-APAIQLDCSHIFHLQCCRRVLENRWL---GPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cccCceEEEEehhhhCC-CcceecCCccchhHHHHHHHHHhccc---CCeeEEeeeecccccchhhhHH
Confidence 34456788887644331 11466799999999999988765432 1333445889999998865333
No 92
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=86.12 E-value=0.35 Score=33.03 Aligned_cols=42 Identities=29% Similarity=0.703 Sum_probs=23.7
Q ss_pred cccccccccccccCCCcEEecCC-CcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CG-HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..|.-||-.... ...|. |-.|.+|+...+..+. .||.|..+.
T Consensus 3 ~nCKsCWf~~k~------Li~C~dHYLCl~CLt~ml~~s~-------------~C~iC~~~L 45 (50)
T PF03854_consen 3 YNCKSCWFANKG------LIKCSDHYLCLNCLTLMLSRSD-------------RCPICGKPL 45 (50)
T ss_dssp ----SS-S--SS------EEE-SS-EEEHHHHHHT-SSSS-------------EETTTTEE-
T ss_pred ccChhhhhcCCC------eeeecchhHHHHHHHHHhcccc-------------CCCcccCcC
Confidence 357777766555 44786 9999999988754433 699998764
No 93
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.64 E-value=0.7 Score=38.33 Aligned_cols=35 Identities=20% Similarity=0.536 Sum_probs=26.7
Q ss_pred ccccccccccccccCCCcEEecCC------CcchHHHHHHHH
Q 023737 52 GLECPICWESFNVVENLPYVLWCG------HTLCKNCVLGLQ 87 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CG------HtFC~~CL~~~~ 87 (278)
..+|.||++..++ +.--+.++|| |-||..|+.+|.
T Consensus 26 ~~EC~IC~~~I~~-~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN-NDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc-CCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 7899999999988 2213334776 569999999984
No 94
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.34 E-value=0.55 Score=37.22 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=23.8
Q ss_pred cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 73 WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 73 ~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.|.|.|.--||.+|++... .||+|.+..
T Consensus 80 ~CNHaFH~hCisrWlktr~-------------vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-------------VCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-------------cCCCcCcce
Confidence 7999999999999976544 699998865
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.03 E-value=0.41 Score=52.24 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=39.9
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.++.+...|++|.+++.+ .-.+..|||.+|..|...|+..+. .||.|...
T Consensus 1148 ~~~~~~~~c~ic~dil~~---~~~I~~cgh~~c~~c~~~~l~~~s-------------~~~~~ksi 1197 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRN---QGGIAGCGHEPCCRCDELWLYASS-------------RCPICKSI 1197 (1394)
T ss_pred HHhhcccchHHHHHHHHh---cCCeeeechhHhhhHHHHHHHHhc-------------cCcchhhh
Confidence 445567799999999995 145569999999999999987765 59999743
No 96
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=81.52 E-value=0.68 Score=44.78 Aligned_cols=73 Identities=25% Similarity=0.487 Sum_probs=48.8
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCC-----------CCCCccccccccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPF-----------QLPFFITCPWCNMVSLRLICK 119 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~-----------~~~~~i~CP~CR~~~~~~~~~ 119 (278)
...+||||+-+|-. +.-++--|.-+.|..|+..........++..- ..+....||.|.....++.+.
T Consensus 73 r~~ecpicflyyps--~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~ 150 (482)
T KOG2789|consen 73 RKTECPICFLYYPS--AKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYI 150 (482)
T ss_pred ccccCceeeeeccc--ccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeee
Confidence 45799999998877 11234479999999999876333222221110 124456899999988888887
Q ss_pred CCCCCC
Q 023737 120 GNLKFP 125 (278)
Q Consensus 120 ~~~~~~ 125 (278)
++.+.+
T Consensus 151 ~i~~~~ 156 (482)
T KOG2789|consen 151 KIVDGL 156 (482)
T ss_pred ccccCC
Confidence 776444
No 97
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=81.24 E-value=1.7 Score=37.11 Aligned_cols=51 Identities=20% Similarity=0.310 Sum_probs=33.3
Q ss_pred CCCccccccccccccccCCCcEEecCCCc---chHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHT---LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHt---FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...+..|=||.+.-+. + ..-..|..+ .+++|+++|...+. ...|+.|+...
T Consensus 5 s~~~~~CRIC~~~~~~-~--~~PC~CkGs~k~VH~sCL~rWi~~s~-----------~~~CeiC~~~Y 58 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-V--TNYCNCKNENKIVHKECLEEWINTSK-----------NKSCKICNGPY 58 (162)
T ss_pred CCCCCeeEecCCCCCC-c--cCCcccCCCchHHHHHHHHHHHhcCC-----------CCcccccCCeE
Confidence 3466799999988543 1 111244443 49999999965432 23799999765
No 98
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.96 E-value=2.3 Score=44.63 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=28.7
Q ss_pred CCCCccccccccccccc-cCCCcE--EecCCCcchHHHHHHHHHh
Q 023737 48 SREEGLECPICWESFNV-VENLPY--VLWCGHTLCKNCVLGLQRA 89 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~-~~~~P~--~L~CGHtFC~~CL~~~~~~ 89 (278)
+--+..+|.+|+..+.+ ++-.+. +-.|+|.+|-.||..|...
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 33456788888888776 222222 2259999999999998544
No 99
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=79.93 E-value=1.8 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=17.6
Q ss_pred cccccccccccCCCcEEec---CCCcchHHHHHHH
Q 023737 55 CPICWESFNVVENLPYVLW---CGHTLCKNCVLGL 86 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~---CGHtFC~~CL~~~ 86 (278)
|.+|.++... .+.-+ |+-.+...|+..+
T Consensus 1 C~~C~~iv~~----G~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVTQ----GQRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-SS----SEE-SS--S--EE-HHHHHHH
T ss_pred CcccchhHee----eccCCCCccCchHHHHHHHHH
Confidence 6788888887 66665 9989999999998
No 100
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=79.71 E-value=1.5 Score=46.21 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=40.5
Q ss_pred CCCccccccccccccccCCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
..+.++|-||.+.++... |+-- .|-|.|...||.+|-.+..+ +.+....||.|+-.
T Consensus 188 ~~~~yeCmIC~e~I~~t~--~~WSC~sCYhVFHl~CI~~WArs~ek------~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTA--PVWSCKSCYHVFHLNCIKKWARSSEK------TGQDGWRCPACQSV 245 (950)
T ss_pred hcCceEEEEeeeeccccC--CceecchhhhhhhHHHHHHHHHHhhh------ccCccccCCcccch
Confidence 356789999999988733 4333 57799999999998554222 23457899999843
No 101
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.58 E-value=1.3 Score=43.66 Aligned_cols=40 Identities=33% Similarity=0.672 Sum_probs=31.7
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVI 91 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~ 91 (278)
.....+|.||.+.+.. ....+.|||.||..|....+....
T Consensus 67 ~~~~~~c~ic~~~~~~---~~~~~~c~H~~c~~cw~~yl~~kI 106 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG---EIIGLGCGHPFCPPCWTGYLGTKI 106 (444)
T ss_pred CCccccCCcccCCCcc---hhhhcCCCcHHHHHHHHHHhhhee
Confidence 3456899999999974 155669999999999999866544
No 102
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=79.40 E-value=0.77 Score=41.73 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=25.6
Q ss_pred Cccccccccc-cccccCCCcEEec-CCCcchHHHHHHHHHh
Q 023737 51 EGLECPICWE-SFNVVENLPYVLW-CGHTLCKNCVLGLQRA 89 (278)
Q Consensus 51 e~l~CpIC~e-~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~ 89 (278)
++-.||+|.. .|-+.+-+-.+-| |-|.+|.+|+.+.+..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~ 49 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR 49 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC
Confidence 4558999986 3444221112225 9999999999998543
No 103
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=78.08 E-value=2.2 Score=28.81 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=22.1
Q ss_pred cccccccccccCCCcEEecCCC-----cchHHHHHHHHHhh
Q 023737 55 CPICWESFNVVENLPYVLWCGH-----TLCKNCVLGLQRAV 90 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~CGH-----tFC~~CL~~~~~~~ 90 (278)
|-||++.-.+.+ |.+.||+- ..+.+|+.+|....
T Consensus 1 CrIC~~~~~~~~--~li~pC~C~Gs~~~vH~~CL~~W~~~~ 39 (47)
T PF12906_consen 1 CRICLEGEEEDE--PLISPCRCKGSMKYVHRSCLERWIRES 39 (47)
T ss_dssp ETTTTEE-SSSS---EE-SSS-SSCCGSEECCHHHHHHHHH
T ss_pred CeEeCCcCCCCC--ceecccccCCCcchhHHHHHHHHHHhc
Confidence 568888766634 67778864 45889999997763
No 104
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=76.99 E-value=4.1 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHhhhhh
Q 023737 227 IVLILIILYAIPASAAILALYIL--------------ITIVFAIPSC 259 (278)
Q Consensus 227 ~~fl~~~~~~~~~~~~~~~~y~~--------------~~~~~~~~~~ 259 (278)
.++|+.+++++++.+++.+++.+ .+.|||+|.+
T Consensus 170 ~~~i~~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~l 216 (256)
T PF14494_consen 170 ALFICLVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPL 216 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhH
Confidence 45788899999999999999887 5778888753
No 105
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.92 E-value=1.3 Score=46.71 Aligned_cols=38 Identities=21% Similarity=0.519 Sum_probs=30.7
Q ss_pred CCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHH
Q 023737 48 SREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQR 88 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~ 88 (278)
.++..-+|.+|...+.. .|.++ +|||.|.++|+.+...
T Consensus 813 v~ep~d~C~~C~~~ll~---~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLI---KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhc---CcceeeeccchHHHHHHHHHHH
Confidence 34567789999997766 38777 9999999999998644
No 106
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=76.49 E-value=1.8 Score=41.61 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=25.4
Q ss_pred CCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 74 CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 74 CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
|.--.|..|+.+|+........+..=+.+...||.||+.+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34456889999996554322211111345678999998764
No 107
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=76.42 E-value=2.2 Score=29.20 Aligned_cols=47 Identities=26% Similarity=0.566 Sum_probs=23.3
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
.+.||+....+.. |..- .|.|.-|-+ ++.++....+. ....||.|.+
T Consensus 2 sL~CPls~~~i~~----P~Rg~~C~H~~CFD-l~~fl~~~~~~--------~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRIRI----PVRGKNCKHLQCFD-LESFLESNQRT--------PKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB-SS----EEEETT--SS--EE-HHHHHHHHHHS-----------B-TTT--
T ss_pred eeeCCCCCCEEEe----CccCCcCcccceEC-HHHHHHHhhcc--------CCeECcCCcC
Confidence 3789999999998 9888 899986633 22333322211 1358999975
No 108
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=75.56 E-value=6.9 Score=30.82 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=23.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 023737 229 LILIILYAIPASAAILALYILITIVFAIPSCL 260 (278)
Q Consensus 229 fl~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 260 (278)
|.=|.||.--...||-.||+|+.+||-+|-++
T Consensus 11 fFEwFLF~~AIFiAItIlYILLalL~EvPkYI 42 (117)
T PF07234_consen 11 FFEWFLFFGAIFIAITILYILLALLFEVPKYI 42 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44444444445678889999999999999763
No 109
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.17 E-value=2.6 Score=38.56 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=33.8
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHh
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRA 89 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~ 89 (278)
...++...|..|++.+.+ |++.+=||.||+.||.+..-.
T Consensus 38 DsiK~FdcCsLtLqPc~d----Pvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRD----PVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cccCCcceeeeecccccC----CccCCCCeeeeHHHHHHHHHH
Confidence 455677789999999999 999999999999999987543
No 110
>PHA02702 ORF033 IMV membrane protein; Provisional
Probab=72.46 E-value=3.3 Score=30.93 Aligned_cols=22 Identities=23% Similarity=0.627 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhcc
Q 023737 245 ALYILITIVFAIPSCLVLYFAL 266 (278)
Q Consensus 245 ~~y~~~~~~~~~~~~~~~~~~~ 266 (278)
...=++..+.-+|..++||+||
T Consensus 47 tvle~va~l~~IPgtIiLY~aY 68 (78)
T PHA02702 47 TVLDFVSLLTTIPCTIILYFLC 68 (78)
T ss_pred HHHHHHHHHHHhchHHHHHHHH
Confidence 3334477777899999999999
No 111
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.91 E-value=4 Score=35.60 Aligned_cols=41 Identities=22% Similarity=0.597 Sum_probs=26.5
Q ss_pred ecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 72 LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 72 L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..||..|.+-|+..|++.-. .+++... ..+-.||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgil-TsRQSFd-iiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGIL-TSRQSFD-IIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHh-hccceee-eeeccCCCCCCcce
Confidence 37999999999999976522 1111111 11347999988754
No 112
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=69.61 E-value=0.42 Score=35.30 Aligned_cols=41 Identities=24% Similarity=0.541 Sum_probs=22.5
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
++.||.|...+..+. ||..|..|-..... .-.||.|..+..
T Consensus 1 e~~CP~C~~~L~~~~--------~~~~C~~C~~~~~~--------------~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEWQG--------GHYHCEACQKDYKK--------------EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEEET--------TEEEETTT--EEEE--------------EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEEeC--------CEEECcccccccee--------------cccCCCcccHHH
Confidence 468999999776511 88899999875411 226999998764
No 113
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=65.82 E-value=4.7 Score=41.69 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=46.8
Q ss_pred ccccCCCCccccccccccccccCCCcEEecCCCcchH--HHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCC
Q 023737 44 SLNNSREEGLECPICWESFNVVENLPYVLWCGHTLCK--NCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGN 121 (278)
Q Consensus 44 s~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~--~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~ 121 (278)
-......-.|.|+++...+. +||.+..|+ .|......-..... .....||+|.+...
T Consensus 298 i~tt~~~vSL~CPl~~~Rm~--------~P~r~~~CkHlQcFD~~~~lq~n~~------~pTW~CPVC~~~~~------- 356 (636)
T KOG2169|consen 298 IATTSLRVSLNCPLSKMRMS--------LPARGHTCKHLQCFDALSYLQMNEQ------KPTWRCPVCQKAAP------- 356 (636)
T ss_pred ceeccceeEecCCcccceee--------cCCcccccccceecchhhhHHhccC------CCeeeCccCCcccc-------
Confidence 33456677899999988444 455555555 66654422222111 12568999998765
Q ss_pred CCCCcchHHHHHHHHHHhc
Q 023737 122 LKFPQKNYYLLWMVESMNG 140 (278)
Q Consensus 122 ~~~~~~N~~l~~lve~~~~ 140 (278)
...+..+..+.+++.....
T Consensus 357 ~e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 357 FEGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ccchhhhHHHHHHHhhccC
Confidence 5666677777777766554
No 114
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=64.21 E-value=3.2 Score=24.67 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=5.7
Q ss_pred ccccccccccc
Q 023737 54 ECPICWESFNV 64 (278)
Q Consensus 54 ~CpIC~e~f~~ 64 (278)
+||-|......
T Consensus 2 ~CP~C~~~V~~ 12 (26)
T PF10571_consen 2 TCPECGAEVPE 12 (26)
T ss_pred cCCCCcCCchh
Confidence 35555555444
No 115
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.41 E-value=9 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCccccccccccccccCCCcEEecC----CCcchHHHHHHHHHhhc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWC----GHTLCKNCVLGLQRAVI 91 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~C----GHtFC~~CL~~~~~~~~ 91 (278)
.+-|.|-+|.|.+.| -....| .|.||-.|-++..++..
T Consensus 266 ~apLcCTLC~ERLED----THFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 266 SAPLCCTLCHERLED----THFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CCceeehhhhhhhcc----CceeecCCCcccceecccCHHHHHhhc
Confidence 345999999999999 556677 79999999988755544
No 116
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.16 E-value=2.6 Score=37.47 Aligned_cols=37 Identities=35% Similarity=0.675 Sum_probs=26.7
Q ss_pred cccccccccccCCCcEEecCCC-cchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 55 CPICWESFNVVENLPYVLWCGH-TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 55 CpIC~e~f~~~~~~P~~L~CGH-tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
|-.|.+.=.. -..+||.| .+|..|-.+. . .||.|+..
T Consensus 161 Cr~C~~~~~~----VlllPCrHl~lC~~C~~~~----~-------------~CPiC~~~ 198 (207)
T KOG1100|consen 161 CRKCGEREAT----VLLLPCRHLCLCGICDESL----R-------------ICPICRSP 198 (207)
T ss_pred ceecCcCCce----EEeecccceEecccccccC----c-------------cCCCCcCh
Confidence 8888775444 55559997 8999996531 1 59999865
No 117
>PF15616 TerY-C: TerY-C metal binding domain
Probab=61.49 E-value=6.2 Score=32.69 Aligned_cols=44 Identities=27% Similarity=0.647 Sum_probs=32.1
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..+...-.||-|...+.- .+-.||+.+|.+= +....||||....
T Consensus 72 seL~g~PgCP~CGn~~~f-----a~C~CGkl~Ci~g------------------~~~~~CPwCg~~g 115 (131)
T PF15616_consen 72 SELIGAPGCPHCGNQYAF-----AVCGCGKLFCIDG------------------EGEVTCPWCGNEG 115 (131)
T ss_pred HHhcCCCCCCCCcChhcE-----EEecCCCEEEeCC------------------CCCEECCCCCCee
Confidence 455566899999998775 4559999998541 1134799998764
No 118
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=59.33 E-value=3.4 Score=28.42 Aligned_cols=14 Identities=29% Similarity=0.916 Sum_probs=11.0
Q ss_pred Cccccccccccccc
Q 023737 51 EGLECPICWESFNV 64 (278)
Q Consensus 51 e~l~CpIC~e~f~~ 64 (278)
+.+.||.|.+.++.
T Consensus 1 ~~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE 14 (54)
T ss_pred CCcCCCCCCCccCH
Confidence 46789999996665
No 119
>PHA02862 5L protein; Provisional
Probab=57.93 E-value=8.2 Score=32.57 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=31.4
Q ss_pred cccccccccccccCCCcEEecCCC-----cchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGH-----TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGH-----tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..|=||.+.-++ . .-||.. -.+++|+.+|...+. ...|+.|+.+.
T Consensus 3 diCWIC~~~~~e----~-~~PC~C~GS~K~VHq~CL~~WIn~S~-----------k~~CeLCkteY 52 (156)
T PHA02862 3 DICWICNDVCDE----R-NNFCGCNEEYKVVHIKCMQLWINYSK-----------KKECNLCKTKY 52 (156)
T ss_pred CEEEEecCcCCC----C-cccccccCcchhHHHHHHHHHHhcCC-----------CcCccCCCCeE
Confidence 478899998655 2 246643 368999999974432 23799999775
No 120
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=56.78 E-value=7 Score=26.66 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=25.6
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHH
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGL 86 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~ 86 (278)
..|..|...|....+...--.||+.||.+|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 3688998888874444444589999999998754
No 121
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG4767 consensus Cytochrome c oxidase, subunit II, and related proteins [Energy production and conversion]
Probab=54.18 E-value=29 Score=30.83 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=10.6
Q ss_pred HHHHHhhhhhhhhhh
Q 023737 250 ITIVFAIPSCLVLYF 264 (278)
Q Consensus 250 ~~~~~~~~~~~~~~~ 264 (278)
|-++-|+|||-+||.
T Consensus 75 Ill~ialPS~~LLY~ 89 (231)
T KOG4767|consen 75 ILLLIALPSLRLLYL 89 (231)
T ss_pred HHHHHHhHHHHHHHH
Confidence 555667888888774
No 123
>PHA03055 Hypothetical protein; Provisional
Probab=54.11 E-value=11 Score=28.35 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=15.2
Q ss_pred HHHHHhhhhhhhhhhcc
Q 023737 250 ITIVFAIPSCLVLYFAL 266 (278)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (278)
+.++--+|..++||+||
T Consensus 55 va~lifIPgti~LY~aY 71 (79)
T PHA03055 55 IGLFIYIPGTIILYATY 71 (79)
T ss_pred HHHHHhhccHHHHHHHH
Confidence 67777899999999999
No 124
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.32 E-value=20 Score=33.13 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=40.4
Q ss_pred CCCCccccccccccccccCCCcEEecCC-----CcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCG-----HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CG-----HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+-+.+-.|=||..-=.+.-+..-+-||. |=.++.|+..|..++.. ..+ ...+.||.|+....
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~--~n~---~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR--GNP---LQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc--CCC---Cceeechhhcchhe
Confidence 3456678999998666533333455773 44789999998665442 212 23568999998754
No 125
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=52.11 E-value=9.6 Score=27.84 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=10.2
Q ss_pred cchHHHHHHHHHhhc
Q 023737 77 TLCKNCVLGLQRAVI 91 (278)
Q Consensus 77 tFC~~CL~~~~~~~~ 91 (278)
-||++||.+|.....
T Consensus 11 gFCRNCLskWy~~aA 25 (68)
T PF06844_consen 11 GFCRNCLSKWYREAA 25 (68)
T ss_dssp S--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 499999999976544
No 126
>PHA03062 putative IMV membrane protein; Provisional
Probab=51.01 E-value=14 Score=27.87 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=15.2
Q ss_pred HHHHHhhhhhhhhhhcc
Q 023737 250 ITIVFAIPSCLVLYFAL 266 (278)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (278)
+.++--+|..++||+||
T Consensus 56 va~lifIPgti~LY~aY 72 (78)
T PHA03062 56 VAILIFVPGTIALYSAY 72 (78)
T ss_pred HHHHHhhccHHHHHHHH
Confidence 67777899999999999
No 127
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=50.92 E-value=14 Score=29.20 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCccccccccccccccCC----CcEEecC---CCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVEN----LPYVLWC---GHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~----~P~~L~C---GHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+.+..|..|.+.-.+... ......| .-.||..||.......... ........||.||...
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~e----v~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEE----VLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHH----HhcCCceECCCCCCee
Confidence 456678888885544000 0011244 6679999998764432210 0112356899998754
No 128
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.65 E-value=6.5 Score=28.05 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=18.5
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 50 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
++...|.+|...|.-. +....- .||+.||.+|...
T Consensus 7 ~~~~~C~~C~~~F~~~-~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 7 SEASNCMICGKKFSLF-RRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GG-SB-TTT--B-BSS-S-EEE-TTT--EEECCCS-E
T ss_pred CCCCcCcCcCCcCCCc-eeeEccCCCCCEECCchhCC
Confidence 3567899999999653 334444 8999999999864
No 129
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=49.78 E-value=45 Score=24.26 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=25.6
Q ss_pred hcchhHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHhhhhhhhhhhcccchHHH
Q 023737 220 TAKFPLIIVLILIIL----YAIPASAAILALYILITIVFAIPSCLVLYFALPILDWL 272 (278)
Q Consensus 220 t~~~~~v~~fl~~~~----~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (278)
.+.+|+|+|||+.-+ .-+-..|+.|++.++| +==|.+|-+-|-
T Consensus 8 mapipliliflysyfkiklhklitialflgclffi----------lrdfcfppmlw~ 54 (78)
T PF05293_consen 8 MAPIPLILIFLYSYFKIKLHKLITIALFLGCLFFI----------LRDFCFPPMLWT 54 (78)
T ss_pred ecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHccCCHHHHH
Confidence 578899999987543 3334444445444433 234566766664
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=49.14 E-value=9.7 Score=36.15 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=34.1
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
-.|++|.+..+..+..-.-.+||+..|..|+...... .-.||.||+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~-------------~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG-------------DGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc-------------CCCCCccCCcc
Confidence 5899999988664433333489999999999876222 22699999654
No 131
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.90 E-value=26 Score=24.80 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=30.1
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
-.|..|...+.....-.++-.=..|||..|.+..+. . .||-|....
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-~--------------~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-G--------------VCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-C--------------cCcCCCCcc
Confidence 356667666655333355555556899999988632 1 599998654
No 132
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=47.10 E-value=46 Score=24.31 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=16.0
Q ss_pred HHHhhhhhhhhhhcccchH
Q 023737 252 IVFAIPSCLVLYFALPILD 270 (278)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~ 270 (278)
+--.+|.++++..++||+.
T Consensus 65 ~WTiiP~iiLl~l~~pSl~ 83 (84)
T PF02790_consen 65 IWTIIPAIILLFLAFPSLK 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhcc
Confidence 3457899999999999985
No 133
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=46.76 E-value=21 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=24.5
Q ss_pred ehhhhhcchhHHHHHHHHHHH-HHhHHHHHHHHHHHH
Q 023737 215 FFAQLTAKFPLIIVLILIILY-AIPASAAILALYILI 250 (278)
Q Consensus 215 ~~~~~t~~~~~v~~fl~~~~~-~~~~~~~~~~~y~~~ 250 (278)
-..++...+-++++.+.+|+| ++|..+=..+.|+-+
T Consensus 108 ~~~~~l~~~~~~~~v~a~~lFPlWP~~~r~gv~YlS~ 144 (224)
T PF03839_consen 108 PLMQYLIGALLLVGVIAICLFPLWPRWMRQGVYYLSV 144 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcChHHHhheeehhHH
Confidence 344555556677888888988 888876666666443
No 134
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=45.43 E-value=45 Score=24.66 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 023737 228 VLILIILYAIPASAAILALYI 248 (278)
Q Consensus 228 ~fl~~~~~~~~~~~~~~~~y~ 248 (278)
.||++++|++|.|-++++..+
T Consensus 20 F~ilfIvlmipI~pll~~~~i 40 (72)
T PF13198_consen 20 FFILFIVLMIPISPLLFVWII 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888876665443
No 135
>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5.
Probab=44.61 E-value=18 Score=27.13 Aligned_cols=17 Identities=35% Similarity=0.725 Sum_probs=15.0
Q ss_pred HHHHHhhhhhhhhhhcc
Q 023737 250 ITIVFAIPSCLVLYFAL 266 (278)
Q Consensus 250 ~~~~~~~~~~~~~~~~~ 266 (278)
+.++--+|..++||+||
T Consensus 55 vailifIPGTIiLY~aY 71 (77)
T PF04713_consen 55 VAILIFIPGTIILYSAY 71 (77)
T ss_pred HHHHhhcccHHHHHHHH
Confidence 66777799999999999
No 136
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.48 E-value=38 Score=33.69 Aligned_cols=36 Identities=31% Similarity=0.743 Sum_probs=30.0
Q ss_pred cCCCCccccccc-cccccccCCCcEEe--cCCCcchHHHHHHH
Q 023737 47 NSREEGLECPIC-WESFNVVENLPYVL--WCGHTLCKNCVLGL 86 (278)
Q Consensus 47 ~~l~e~l~CpIC-~e~f~~~~~~P~~L--~CGHtFC~~CL~~~ 86 (278)
-...+++.|++| .+.|.+ -+++ -|.-++|..|++..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~----~~l~~~~~~~~~~~~~i~~~ 252 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLD----AALLSKCCLKSFCDKCIRDA 252 (448)
T ss_pred ccCCccccCceecchhhHH----HHHhhhhhcccCCccccccc
Confidence 456789999999 788888 7777 68899999999765
No 137
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=44.06 E-value=12 Score=29.89 Aligned_cols=50 Identities=24% Similarity=0.439 Sum_probs=32.9
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
..-.|.+|...|.--.+..... .|+|.+|.+|-.. ..+ .....|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~----~~~--------~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY----SKK--------EPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE----TSS--------SCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc----CCC--------CCCEEChhhHHH
Confidence 4558999998776544456666 8999999999643 111 125579999764
No 138
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.85 E-value=17 Score=28.28 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHhhcc
Q 023737 77 TLCKNCVLGLQRAVIR 92 (278)
Q Consensus 77 tFC~~CL~~~~~~~~~ 92 (278)
-||++|+..|......
T Consensus 42 gFCRNCLs~Wy~eaae 57 (104)
T COG3492 42 GFCRNCLSNWYREAAE 57 (104)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4999999999776553
No 139
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=41.71 E-value=38 Score=30.75 Aligned_cols=53 Identities=6% Similarity=0.190 Sum_probs=31.4
Q ss_pred ehhhhhcchhHHHHHHHHHHH-HHhHHHHHHHHHHHHHHH-----------Hhhhhhhhhhhccc
Q 023737 215 FFAQLTAKFPLIIVLILIILY-AIPASAAILALYILITIV-----------FAIPSCLVLYFALP 267 (278)
Q Consensus 215 ~~~~~t~~~~~v~~fl~~~~~-~~~~~~~~~~~y~~~~~~-----------~~~~~~~~~~~~~~ 267 (278)
-..++...+-++++.+.+|+| ++|...=..+.|+-+.++ +=+=.|+|+||..+
T Consensus 116 ~~~~~l~~~~~~~~ila~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilF~i~~~~~g 180 (232)
T TIGR00869 116 PYMDYLIVILVVSIILALVLFPLWPRFMRRGSWYLSLGALGIIGGFFAVAILRLILFVLTLIVVK 180 (232)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccChHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334555666678888888887 777665555555443322 22345666676643
No 140
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.13 E-value=24 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=27.8
Q ss_pred ccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.|..|-.-+--...-..+..=.|+||..|.+..+. + .||-|....
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~------g---------~CPnCGGel 51 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRLH------G---------LCPNCGGEL 51 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc------C---------cCCCCCchh
Confidence 35555554443222255555678999999985421 1 699998764
No 141
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.57 E-value=14 Score=35.80 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=26.5
Q ss_pred CCcccccccccccccc-CCCcEEecCCCcchHHHHHHHH
Q 023737 50 EEGLECPICWESFNVV-ENLPYVLWCGHTLCKNCVLGLQ 87 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~-~~~P~~L~CGHtFC~~CL~~~~ 87 (278)
+.-..||.|.-.+... .---++..|||-||..|...|.
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~ 342 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWK 342 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchh
Confidence 3456788888776552 2223444899999999998873
No 142
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.57 E-value=23 Score=32.64 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=39.3
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.....+.|||=.-.|+..-+.-....|||.|=.+-+.+. .. + .|++|....
T Consensus 107 ~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-ka----s----------~C~~C~a~y 157 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-KA----S----------VCHVCGAAY 157 (293)
T ss_pred cccceeecccccceecceEEEEEEeccceeccHHHHHHh-hh----c----------cccccCCcc
Confidence 345688999999988885555556699999999998876 21 1 599999865
No 143
>PF14353 CpXC: CpXC protein
Probab=38.02 E-value=31 Score=27.71 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=10.4
Q ss_pred ccccccccccccc
Q 023737 52 GLECPICWESFNV 64 (278)
Q Consensus 52 ~l~CpIC~e~f~~ 64 (278)
+++||-|...+..
T Consensus 1 ~itCP~C~~~~~~ 13 (128)
T PF14353_consen 1 EITCPHCGHEFEF 13 (128)
T ss_pred CcCCCCCCCeeEE
Confidence 3689999888877
No 144
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.55 E-value=11 Score=35.38 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCCcchHHHHHHHHHhhccCCCCCC--CCCCcccccccccccc
Q 023737 74 CGHTLCKNCVLGLQRAVIRLPTLPF--QLPFFITCPWCNMVSL 114 (278)
Q Consensus 74 CGHtFC~~CL~~~~~~~~~~~~~p~--~~~~~i~CP~CR~~~~ 114 (278)
|..-.|.+|+.+|...... ...+ =..+.-.||.||+...
T Consensus 325 crp~wc~~cla~~f~~rq~--~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQD--NVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhccc--chhHHHHHhcCCCCcchhhceE
Confidence 4456788999998654321 0000 0133558999998764
No 145
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.81 E-value=41 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.327 Sum_probs=23.4
Q ss_pred HHHHHHHHHHH-HHhHH-----------HHHHHHHHHHHHHHhhhhhhhhhhccc
Q 023737 225 LIIVLILIILY-AIPAS-----------AAILALYILITIVFAIPSCLVLYFALP 267 (278)
Q Consensus 225 ~v~~fl~~~~~-~~~~~-----------~~~~~~y~~~~~~~~~~~~~~~~~~~~ 267 (278)
+|++-|.|||| ++|.. ++.++.+||+..+.=+=.|.|.|.-|+
T Consensus 197 fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 197 FVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36667778887 66643 233344344333333345566666666
No 146
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=35.27 E-value=1.1e+02 Score=22.91 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=8.8
Q ss_pred cchHHHHHHHh
Q 023737 267 PILDWLVREII 277 (278)
Q Consensus 267 ~~~~~~~~~~~ 277 (278)
=|..|.++|+-
T Consensus 60 ~Sv~WFi~EL~ 70 (75)
T PF08636_consen 60 ASVNWFIAELK 70 (75)
T ss_pred HHHHHHHHHHH
Confidence 36899999974
No 147
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=35.03 E-value=1e+02 Score=24.82 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHH----------------HHHHHhhhhhhhhhhcc
Q 023737 222 KFPLIIVLILIILYAIPASAAILALYIL----------------ITIVFAIPSCLVLYFAL 266 (278)
Q Consensus 222 ~~~~v~~fl~~~~~~~~~~~~~~~~y~~----------------~~~~~~~~~~~~~~~~~ 266 (278)
|.||=.|.|.+.|.++.+..++++++++ +.++-.+|-+--++.+|
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y 98 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAY 98 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHH
Confidence 4456666777777777777777666654 55666677665444443
No 148
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.31 E-value=27 Score=36.35 Aligned_cols=49 Identities=29% Similarity=0.506 Sum_probs=35.8
Q ss_pred ccccccccccccCCCcEEecCCC-cchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCGH-TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CGH-tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.|+||-...+- +..-.||| ..|..|..+........ .-...||+||..+
T Consensus 2 ~c~ic~~s~~~----~~~~s~~h~~v~~~~~~R~~~~~~~~-------~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDF----VGRGSCGHNEVCATCVVRLRFELNNR-------KCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccc----cccccccccccchhhhhhhhhhcccc-------cccccCcccccce
Confidence 59999999888 76679999 99999998875432210 0134689999854
No 149
>PHA03164 hypothetical protein; Provisional
Probab=33.67 E-value=35 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=13.9
Q ss_pred hhhhhcchhHHHHHHHHHHHH
Q 023737 216 FAQLTAKFPLIIVLILIILYA 236 (278)
Q Consensus 216 ~~~~t~~~~~v~~fl~~~~~~ 236 (278)
|+.+|.-.--+|+||.+|+|+
T Consensus 60 FlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 60 FLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 444555555677888888775
No 150
>PLN02189 cellulose synthase
Probab=32.76 E-value=34 Score=37.43 Aligned_cols=51 Identities=25% Similarity=0.535 Sum_probs=33.8
Q ss_pred cccccccccccccc-CCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVV-ENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~-~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.-.|.||.+..... +--+.+. .|+--.|+.|.+-- ++.. .-.||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye-r~eg-----------~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE-RREG-----------TQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhh-hhcC-----------CccCcccCCchh
Confidence 34899999987641 1125555 58889999999532 2221 126999987654
No 151
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.81 E-value=47 Score=30.05 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 023737 225 LIIVLILIILYAIPASAAILALYI 248 (278)
Q Consensus 225 ~v~~fl~~~~~~~~~~~~~~~~y~ 248 (278)
+++.|+.++++.+|+.++++++|.
T Consensus 235 ~lv~~l~~l~p~~~~~~~~~~~~~ 258 (262)
T PF14257_consen 235 GLVVFLVGLLPWLPLILIIGLLVR 258 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666555555443
No 152
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=31.68 E-value=13 Score=25.60 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=22.1
Q ss_pred ccccc--ccccccccc---CCCcEEe-cCCCcchHHHHHHH
Q 023737 52 GLECP--ICWESFNVV---ENLPYVL-WCGHTLCKNCVLGL 86 (278)
Q Consensus 52 ~l~Cp--IC~e~f~~~---~~~P~~L-~CGHtFC~~CL~~~ 86 (278)
..-|| -|...+... ....+.- .|||.||..|...|
T Consensus 18 ~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred ccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcC
Confidence 33576 666555542 2223344 68999999998775
No 153
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.60 E-value=40 Score=31.80 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=39.4
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....+.-.|.+|...+.. |... -|+|.||.-|...|..... .||.|+....
T Consensus 100 ~~~~~~~~~~~~~g~l~v----pt~~qg~w~qf~~~~p~~~~~~~~-------------~~~d~~~~~~ 151 (324)
T KOG0824|consen 100 GFQQDHDICYICYGKLTV----PTRIQGCWHQFCYVCPKSNFAMGN-------------DCPDCRGKIS 151 (324)
T ss_pred cccCCccceeeeeeeEEe----cccccCceeeeeecCCchhhhhhh-------------ccchhhcCcC
Confidence 344567789999999998 7777 5999999999988754433 5888887653
No 154
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=30.92 E-value=1.4e+02 Score=24.09 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHH
Q 023737 231 LIILYAIPASAAILAL 246 (278)
Q Consensus 231 ~~~~~~~~~~~~~~~~ 246 (278)
.+++|.+|..++++++
T Consensus 71 a~l~Y~lPll~li~g~ 86 (135)
T PF04246_consen 71 AFLVYLLPLLALIAGA 86 (135)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555554444443
No 155
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=30.67 E-value=66 Score=24.30 Aligned_cols=51 Identities=24% Similarity=0.536 Sum_probs=19.4
Q ss_pred CccccccccccccccC-CCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVE-NLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~-~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..-.|.||.+..-..+ --+.+. .|+--.|+.|.+=-.+.. .-.||.|+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg------------~q~CpqCkt~y 61 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG------------NQVCPQCKTRY 61 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-------------SB-TTT--B-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC------------cccccccCCCc
Confidence 3457999998765521 115555 789999999986321221 12699998653
No 156
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=30.67 E-value=48 Score=19.35 Aligned_cols=14 Identities=50% Similarity=0.738 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 023737 240 SAAILALYILITIV 253 (278)
Q Consensus 240 ~~~~~~~y~~~~~~ 253 (278)
.|+|++|++|+.++
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 35566666665554
No 157
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=30.46 E-value=51 Score=23.12 Aligned_cols=33 Identities=30% Similarity=0.714 Sum_probs=25.0
Q ss_pred CccccccccccccccCCCcEEe--cCCCcchHHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLG 85 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L--~CGHtFC~~CL~~ 85 (278)
+.-.|++|.+.|.+.+ .++. .||-.+.+.|..+
T Consensus 4 ~~~~C~~Cg~~~~~~d--DiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGD--DIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCC--CEEECCCCCCcccHHHHhh
Confidence 4568999999995332 4444 7999999999764
No 158
>PLN02436 cellulose synthase A
Probab=29.42 E-value=41 Score=36.97 Aligned_cols=51 Identities=27% Similarity=0.601 Sum_probs=33.9
Q ss_pred ccccccccccccc-cCCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNV-VENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~-~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.-.|.||.+.... .+--|.+. .|+--.|+.|.+-- ++.. .-.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye-r~eg-----------~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE-RREG-----------NQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhh-hhcC-----------CccCcccCCchh
Confidence 3489999998754 12226665 68999999999532 2211 126999987654
No 159
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=29.17 E-value=57 Score=20.47 Aligned_cols=8 Identities=50% Similarity=1.119 Sum_probs=5.3
Q ss_pred HHHHhHHH
Q 023737 234 LYAIPASA 241 (278)
Q Consensus 234 ~~~~~~~~ 241 (278)
+|.||+.+
T Consensus 12 ~y~Ip~v~ 19 (33)
T TIGR03068 12 IYAIPVAS 19 (33)
T ss_pred hhHHHHHH
Confidence 46677766
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.15 E-value=36 Score=30.82 Aligned_cols=26 Identities=19% Similarity=0.602 Sum_probs=18.6
Q ss_pred ccccccccccccccCCCcEEecCCCcc
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTL 78 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtF 78 (278)
.+.||+|.+.+...+ .....+.||+|
T Consensus 2 ~~~CP~C~~~l~~~~-~~~~C~~~h~f 27 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-NSWICPQNHQF 27 (272)
T ss_pred cccCCCCCcchhcCC-CEEEcCCCCCC
Confidence 378999999996533 24555678987
No 161
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=28.13 E-value=49 Score=35.39 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=35.6
Q ss_pred CCccccccccccccccCCCcEEecCCCc-----chHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHT-----LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHt-----FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+|..+|-||...=..++ |.--||..+ .+++|+.+|+.-+. ...|-.|..+.
T Consensus 10 ~d~~~CRICr~e~~~d~--pLfhPCKC~GSIkYiH~eCL~eW~~~s~-----------~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDD--PLFHPCKCSGSIKYIHRECLMEWMECSG-----------TKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCC--cCcccccccchhHHHHHHHHHHHHhcCC-----------Ccceeeeccee
Confidence 34579999987544433 766677654 78999999966332 23699998764
No 162
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.93 E-value=48 Score=22.45 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=8.2
Q ss_pred CCCCcccccccccc
Q 023737 99 QLPFFITCPWCNMV 112 (278)
Q Consensus 99 ~~~~~i~CP~CR~~ 112 (278)
.++....||.|...
T Consensus 30 ~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 30 DLPDDWVCPVCGAP 43 (47)
T ss_dssp GS-TT-B-TTTSSB
T ss_pred HCCCCCcCcCCCCc
Confidence 45667899999864
No 163
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.48 E-value=1.4e+02 Score=26.85 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=15.6
Q ss_pred HhhhhhhhhhhcccchHHHH
Q 023737 254 FAIPSCLVLYFALPILDWLV 273 (278)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~ 273 (278)
-.+|.++++.+++||+..|.
T Consensus 66 TviP~iiL~~l~~ps~~~l~ 85 (227)
T MTH00154 66 TILPAIILIFIALPSLRLLY 85 (227)
T ss_pred EehHHHHHHHHHHHHHHHHH
Confidence 45888888888888887663
No 164
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.13 E-value=43 Score=29.03 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=10.7
Q ss_pred HHHHHHhhhh-hhhhhhcccc
Q 023737 249 LITIVFAIPS-CLVLYFALPI 268 (278)
Q Consensus 249 ~~~~~~~~~~-~~~~~~~~~~ 268 (278)
|-|++|.+|- +++.|++||.
T Consensus 96 lGtifFLlPfc~l~iy~~~~~ 116 (182)
T COG4665 96 LGTIFFLLPFCLLVIYLSWPY 116 (182)
T ss_pred HHHHHHHHHHHHHHHHHccHH
Confidence 3455555552 3455666664
No 165
>PRK03001 M48 family peptidase; Provisional
Probab=25.44 E-value=1.1e+02 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHhhhhhhhhhhcccc
Q 023737 251 TIVFAIPSCLVLYFALPI 268 (278)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (278)
.++|++...++.||.+|.
T Consensus 33 ~~~~~~~~~~~~~~~~~~ 50 (283)
T PRK03001 33 ALLFALGMNFFSYWFSDK 50 (283)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 345555555666666654
No 166
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.23 E-value=22 Score=24.30 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=18.7
Q ss_pred ccccc--ccccccccCCCcE--Ee-c-CCCcchHHHHHHH
Q 023737 53 LECPI--CWESFNVVENLPY--VL-W-CGHTLCKNCVLGL 86 (278)
Q Consensus 53 l~CpI--C~e~f~~~~~~P~--~L-~-CGHtFC~~CL~~~ 86 (278)
..||- |...+...+.... +. + |++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47877 8887777333232 33 5 9999999997654
No 167
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.81 E-value=75 Score=18.94 Aligned_cols=13 Identities=54% Similarity=0.881 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 023737 241 AAILALYILITIV 253 (278)
Q Consensus 241 ~~~~~~y~~~~~~ 253 (278)
+++++||+|+.++
T Consensus 9 ~livVLFILLIIi 21 (26)
T TIGR01732 9 ALIVVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHHHHh
Confidence 3455555554443
No 168
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=24.73 E-value=70 Score=22.59 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHh
Q 023737 223 FPLIIVLILIILYAIP 238 (278)
Q Consensus 223 ~~~v~~fl~~~~~~~~ 238 (278)
.||.++||-++|+.|-
T Consensus 15 ~~lLiliis~~f~lI~ 30 (61)
T PF06692_consen 15 GPLLILIISFVFFLIT 30 (61)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 4566677766665543
No 169
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=24.42 E-value=95 Score=28.29 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=35.1
Q ss_pred CccccccccccccccCCCcEEecCCC-----cchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGH-----TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGH-----tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++..|-||.+........+...+|.. ...+.|+..|...+. ...|..|....
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~-----------~~~CeiC~~~~ 133 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG-----------NITCEICKSFF 133 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc-----------Ceeeecccccc
Confidence 35789999998776333355667753 357899999854221 34799998764
No 170
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=24.12 E-value=21 Score=21.36 Aligned_cols=12 Identities=33% Similarity=1.077 Sum_probs=6.4
Q ss_pred cccccccccccc
Q 023737 53 LECPICWESFNV 64 (278)
Q Consensus 53 l~CpIC~e~f~~ 64 (278)
..|+.|+..+.+
T Consensus 2 ~~C~rC~~~~~~ 13 (30)
T PF06827_consen 2 EKCPRCWNYIED 13 (30)
T ss_dssp SB-TTT--BBEE
T ss_pred CcCccCCCcceE
Confidence 368888887766
No 171
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=24.08 E-value=2e+02 Score=24.85 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 023737 236 AIPASAAILALYILITIVFAIPSCLVLYFA 265 (278)
Q Consensus 236 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 265 (278)
++.++.+.+..++++.+++++=.+.++|+.
T Consensus 21 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 50 (199)
T PF10112_consen 21 TFLVSFFGFDHSFLLSLLIGAVAFAVVYLF 50 (199)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555666666666666666654
No 172
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=4.9e+02 Score=24.04 Aligned_cols=28 Identities=7% Similarity=0.241 Sum_probs=18.1
Q ss_pred cCCccccccccCCCCccccccccccccc
Q 023737 37 ELSDDDASLNNSREEGLECPICWESFNV 64 (278)
Q Consensus 37 ~~s~~~~s~~~~l~e~l~CpIC~e~f~~ 64 (278)
|.-.+|.-.......+..|.-|...+.+
T Consensus 132 DYpp~ERr~LAkkS~e~~ck~cGs~mk~ 159 (314)
T KOG0428|consen 132 DYPPEERRALAKKSQEFCCKGCGSAMKD 159 (314)
T ss_pred cCCHHHHHHHHHhhcccCccccCChhhh
Confidence 3334444445556677788888888887
No 173
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.82 E-value=1.7e+02 Score=25.33 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=6.5
Q ss_pred HHHHHHHHHhHHHHH
Q 023737 229 LILIILYAIPASAAI 243 (278)
Q Consensus 229 fl~~~~~~~~~~~~~ 243 (278)
|+.++||.+..-.|+
T Consensus 107 ~v~vllW~vL~~ia~ 121 (181)
T KOG3249|consen 107 WVIVLLWFVLAPIAH 121 (181)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433343
No 174
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=23.65 E-value=59 Score=24.78 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHH-----------HHHHHhhhhh
Q 023737 235 YAIPASAAILALYIL-----------ITIVFAIPSC 259 (278)
Q Consensus 235 ~~~~~~~~~~~~y~~-----------~~~~~~~~~~ 259 (278)
|-+|+|.--..+|++ +|+|+|+|.-
T Consensus 42 YniP~s~WttsMf~~Q~ami~vYS~VFT~L~sIPlg 77 (85)
T PF10749_consen 42 YNIPFSEWTTSMFILQGAMILVYSIVFTILLSIPLG 77 (85)
T ss_pred hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556766444444433 8999999953
No 175
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.03 E-value=51 Score=35.00 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=25.1
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHH
Q 023737 50 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQR 88 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~ 88 (278)
.-.+.|.+|.-..... ..+. .|||.....|..+|..
T Consensus 1026 ~~~~~C~~C~l~V~gs---s~~Cg~C~Hv~H~sc~~eWf~ 1062 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGS---SNFCGTCGHVGHTSCMMEWFR 1062 (1081)
T ss_pred cceeeeeeEeeEeecc---chhhccccccccHHHHHHHHh
Confidence 3456688877655541 2223 8999999999999943
No 176
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.64 E-value=62 Score=35.51 Aligned_cols=52 Identities=29% Similarity=0.661 Sum_probs=34.5
Q ss_pred Ccccccccccccccc-CCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWESFNVV-ENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e~f~~~-~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..-.|.||.+..... +--|.+. .|+--.|+.|.+ .-.+.. .-.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~~g-----------~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERSEG-----------NQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhhcC-----------CccCCccCCchh
Confidence 455799999976651 1126665 788899999994 322211 126999987654
No 177
>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast). Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].
Probab=22.56 E-value=56 Score=30.52 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHH-------HHHHHhhhhhhhhhhcccchH
Q 023737 237 IPASAAILALYIL-------ITIVFAIPSCLVLYFALPILD 270 (278)
Q Consensus 237 ~~~~~~~~~~y~~-------~~~~~~~~~~~~~~~~~~~~~ 270 (278)
+=...|+.++==| +-++-+.|+|||+|+.|-.+-
T Consensus 144 VD~~~Am~gID~LLkSneL~F~iva~~Pa~li~~~~~~~l~ 184 (290)
T PF08637_consen 144 VDVEVAMSGIDKLLKSNELNFGIVAASPAFLISYGLYRWLR 184 (290)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445566655433 778889999999999885444
No 178
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.52 E-value=43 Score=30.05 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=33.1
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.-.|.+|..+.-. -+.. .||-.+...|+.+.+.+.. .||.|.-.
T Consensus 181 lk~Cn~Ch~LvIq----g~rCg~c~i~~h~~c~qty~q~~~-------------~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQ----GIRCGSCNIQYHRGCIQTYLQRRD-------------ICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhhe----eeccCcccchhhhHHHHHHhcccC-------------cCCchhcc
Confidence 4579999998887 5555 7887889999998854411 59999654
No 179
>COG4920 Predicted membrane protein [Function unknown]
Probab=22.42 E-value=92 Score=27.99 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=45.1
Q ss_pred ccccccceehheehhhhhcchhHHHHHHHHHHHHHhHHHH------------HHHHHHH-HHHHHhhhhhhhhh
Q 023737 203 ERLQLSLRKSLVFFAQLTAKFPLIIVLILIILYAIPASAA------------ILALYIL-ITIVFAIPSCLVLY 263 (278)
Q Consensus 203 ~~~~~~~~k~~~~~~~~t~~~~~v~~fl~~~~~~~~~~~~------------~~~~y~~-~~~~~~~~~~~~~~ 263 (278)
|.++..-+..+.+|..+.--+|-.|+|..+.+|++|..|+ -++.|+- +-.+|||-+.-++=
T Consensus 87 e~l~E~~~~~~~~f~~m~~ml~yfIll~~f~~p~~~~~a~n~~~~~~l~~f~~Fl~Yfel~fgV~~v~~~~v~k 160 (249)
T COG4920 87 ELLNEYKRFARASFMPMLTMLPYFILLATFLFPTLPPLAENGLGPVVLREFARFLSYFELVFGVFAVISMAVFK 160 (249)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcchHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666778888999888999999999999999988764 3445553 56667766655543
No 180
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.03 E-value=1.7e+02 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=17.1
Q ss_pred HHHhhhhhhhhhhcccchHHHH
Q 023737 252 IVFAIPSCLVLYFALPILDWLV 273 (278)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~ 273 (278)
+...+|.++++.+++|++..+.
T Consensus 52 iWTviPiiill~L~~~sl~~~~ 73 (194)
T MTH00047 52 LWTVVPTLLVLVLCFLNLNFIT 73 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999886553
No 181
>PHA02655 hypothetical protein; Provisional
Probab=21.97 E-value=58 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=14.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 023737 229 LILIILYAIPASAAILALYILI 250 (278)
Q Consensus 229 fl~~~~~~~~~~~~~~~~y~~~ 250 (278)
|..+-.|.|||......+-+|+
T Consensus 62 fvvftiylipfvivmisciflv 83 (94)
T PHA02655 62 FVVFTIYLIPFVIVMISCIFLV 83 (94)
T ss_pred heeehhhHHHHHHHHHHHHHhh
Confidence 5566678888877766665554
No 182
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.66 E-value=36 Score=36.26 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=34.0
Q ss_pred ccccccccccccc----CCCcEEe-cCCCcchHHHHHHHHHhh---ccCCCCCCCCCCccccccccc
Q 023737 53 LECPICWESFNVV----ENLPYVL-WCGHTLCKNCVLGLQRAV---IRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 53 l~CpIC~e~f~~~----~~~P~~L-~CGHtFC~~CL~~~~~~~---~~~~~~p~~~~~~i~CP~CR~ 111 (278)
..|..|...|..- .++..-. .||..||..|-....... .+.++.+-..+-...|-.|-+
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 5799999999631 1123334 899999999986542211 111222222223346888863
No 183
>COG3162 Predicted membrane protein [Function unknown]
Probab=21.50 E-value=1.3e+02 Score=23.89 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=11.7
Q ss_pred hhhcccchHHHHHHHh
Q 023737 262 LYFALPILDWLVREII 277 (278)
Q Consensus 262 ~~~~~~~~~~~~~~~~ 277 (278)
..+|=-.+|.|.+||.
T Consensus 82 v~rAn~~fDrl~~~i~ 97 (102)
T COG3162 82 VRRANGEFDRLNAEIL 97 (102)
T ss_pred hhHhhccchHHHHHHH
Confidence 3466667888888874
No 184
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=21.47 E-value=1.5e+02 Score=18.89 Aligned_cols=9 Identities=11% Similarity=0.501 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 023737 227 IVLILIILY 235 (278)
Q Consensus 227 ~~fl~~~~~ 235 (278)
..|+...|+
T Consensus 6 lgfiAt~Lf 14 (35)
T PRK04989 6 LGFVASLLF 14 (35)
T ss_pred HHHHHHHHH
Confidence 345555555
No 185
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.39 E-value=77 Score=34.93 Aligned_cols=51 Identities=25% Similarity=0.609 Sum_probs=33.8
Q ss_pred cccccccccccccc-CCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVV-ENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~-~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.-.|.||.+..... +--|.+. .||--.|+.|.+ +-++.. .-.||.|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr~eG-----------~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YERKDG-----------NQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhhhcC-----------CccCCccCCchh
Confidence 34899999986651 1116655 788889999994 322221 126999987654
No 186
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=21.20 E-value=1.3e+02 Score=27.96 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=32.1
Q ss_pred cccccccccccccCCCcEEecC-----CCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWC-----GHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~C-----GHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.+|.+|.+.+.+.+ ...+.| +-.....|+...+.....-.- +|..-.||.|++.
T Consensus 183 ~~celc~~ei~e~~--~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~----~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETD--WSRATCPNPDCDSLNHLTCLAEELLEVEPGQL----IPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhcccc--ceeccCCCCCCCchhhhhhhhHHHhccCCCce----eccCCCCCchhce
Confidence 58999999985433 444444 545556898873332221111 2334589999874
No 187
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=21.06 E-value=49 Score=20.74 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=7.8
Q ss_pred ccccccccccc
Q 023737 103 FITCPWCNMVS 113 (278)
Q Consensus 103 ~i~CP~CR~~~ 113 (278)
...||.|....
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 34699998754
No 188
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.98 E-value=76 Score=20.06 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 023737 53 LECPICWESFNV 64 (278)
Q Consensus 53 l~CpIC~e~f~~ 64 (278)
.+||-|...|..
T Consensus 3 i~CP~C~~~f~v 14 (37)
T PF13719_consen 3 ITCPNCQTRFRV 14 (37)
T ss_pred EECCCCCceEEc
Confidence 568888888877
No 189
>PRK05978 hypothetical protein; Provisional
Probab=20.98 E-value=2.2e+02 Score=23.99 Aligned_cols=8 Identities=38% Similarity=0.912 Sum_probs=6.4
Q ss_pred cccccccc
Q 023737 105 TCPWCNMV 112 (278)
Q Consensus 105 ~CP~CR~~ 112 (278)
.||.|++-
T Consensus 35 rCP~CG~G 42 (148)
T PRK05978 35 RCPACGEG 42 (148)
T ss_pred cCCCCCCC
Confidence 69999864
No 190
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=20.95 E-value=1.3e+02 Score=22.94 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=17.4
Q ss_pred cCccccccccccceehheehhhh
Q 023737 197 TGHLNAERLQLSLRKSLVFFAQL 219 (278)
Q Consensus 197 ~~~~~~~~~~~~~~k~~~~~~~~ 219 (278)
++.+|.|+++.-+.+-..|+-+|
T Consensus 14 ~si~d~DQL~qlVsrN~sfirdF 36 (84)
T PF06143_consen 14 NSILDYDQLEQLVSRNRSFIRDF 36 (84)
T ss_pred CCCCcHHHHHHHHHhChHHHHHH
Confidence 36678888888888888877773
No 191
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.87 E-value=65 Score=25.17 Aligned_cols=10 Identities=60% Similarity=1.002 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q 023737 229 LILIILYAIP 238 (278)
Q Consensus 229 fl~~~~~~~~ 238 (278)
.++..+||+|
T Consensus 16 l~~~~lyALP 25 (101)
T PF13721_consen 16 LLLGALYALP 25 (101)
T ss_pred HHHHHHHHhh
Confidence 3344445554
No 192
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=20.79 E-value=1.9e+02 Score=24.98 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=5.9
Q ss_pred ccccCcccccc
Q 023737 194 RFLTGHLNAER 204 (278)
Q Consensus 194 ~~~~~~~~~~~ 204 (278)
.|..||.|.-+
T Consensus 65 r~vRD~VDsR~ 75 (170)
T PF11241_consen 65 RYVRDYVDSRR 75 (170)
T ss_pred hhhhhhhhccc
Confidence 34556666544
No 193
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.63 E-value=57 Score=18.57 Aligned_cols=7 Identities=43% Similarity=1.170 Sum_probs=3.9
Q ss_pred ccccccc
Q 023737 105 TCPWCNM 111 (278)
Q Consensus 105 ~CP~CR~ 111 (278)
.||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 4666653
No 194
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.53 E-value=52 Score=27.33 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.1
Q ss_pred cEEecCCCcchHH
Q 023737 69 PYVLWCGHTLCKN 81 (278)
Q Consensus 69 P~~L~CGHtFC~~ 81 (278)
-....|||+||..
T Consensus 70 v~rcecghsf~d~ 82 (165)
T COG4647 70 VIRCECGHSFGDY 82 (165)
T ss_pred EEEEeccccccCh
Confidence 4445999999975
No 195
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=20.37 E-value=71 Score=25.46 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=9.2
Q ss_pred Cccccccccccccc
Q 023737 51 EGLECPICWESFNV 64 (278)
Q Consensus 51 e~l~CpIC~e~f~~ 64 (278)
-...|+-|..-|.+
T Consensus 8 tKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 8 TKRTCPSCGAKFYD 21 (108)
T ss_pred CcccCCCCcchhcc
Confidence 34567777777766
No 196
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.06 E-value=1.6e+02 Score=26.42 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 023737 240 SAAILALYILITIVFA 255 (278)
Q Consensus 240 ~~~~~~~y~~~~~~~~ 255 (278)
..+|-.+-||-||+.|
T Consensus 140 LfLICT~LfLSTVVLA 155 (227)
T PF05399_consen 140 LFLICTLLFLSTVVLA 155 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555566655
Done!