Query 023737
Match_columns 278
No_of_seqs 211 out of 1399
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ztg_A E3 ubiquitin-protein li 99.5 1.8E-14 6E-19 109.6 6.6 77 46-143 7-84 (92)
2 1t1h_A Gspef-atpub14, armadill 99.5 2.1E-14 7.3E-19 105.8 4.7 72 48-142 4-75 (78)
3 2kr4_A Ubiquitin conjugation f 99.5 3.5E-14 1.2E-18 107.3 4.5 74 45-142 7-80 (85)
4 1wgm_A Ubiquitin conjugation f 99.4 1.2E-13 4.1E-18 107.3 7.2 75 45-143 15-90 (98)
5 2kre_A Ubiquitin conjugation f 99.4 1.6E-13 5.4E-18 107.0 7.6 75 46-144 23-97 (100)
6 2y43_A E3 ubiquitin-protein li 99.4 3.5E-14 1.2E-18 109.5 2.3 74 46-143 16-90 (99)
7 3fl2_A E3 ubiquitin-protein li 99.4 2.6E-13 8.8E-18 108.9 5.3 74 47-142 47-120 (124)
8 3lrq_A E3 ubiquitin-protein li 99.4 7.3E-14 2.5E-18 108.4 1.4 75 45-142 15-90 (100)
9 2ecw_A Tripartite motif-contai 99.4 1.5E-13 5E-18 102.0 2.4 58 46-114 13-70 (85)
10 2csy_A Zinc finger protein 183 99.4 4.9E-13 1.7E-17 99.3 5.2 66 47-140 10-75 (81)
11 2ct2_A Tripartite motif protei 99.3 4.3E-13 1.5E-17 100.5 4.1 70 47-130 10-79 (88)
12 2ecv_A Tripartite motif-contai 99.3 1.1E-13 3.7E-18 102.7 0.5 57 47-114 14-70 (85)
13 2yu4_A E3 SUMO-protein ligase 99.3 1.8E-12 6E-17 99.6 7.3 79 48-144 3-85 (94)
14 1z6u_A NP95-like ring finger p 99.3 1.1E-12 3.8E-17 109.2 5.3 71 49-142 75-146 (150)
15 2djb_A Polycomb group ring fin 99.3 1.8E-12 6.3E-17 94.2 5.3 52 46-114 9-61 (72)
16 2egp_A Tripartite motif-contai 99.3 2.9E-14 9.9E-19 105.0 -4.5 59 46-114 6-64 (79)
17 2ysl_A Tripartite motif-contai 99.3 2E-12 6.7E-17 93.8 5.0 56 45-114 13-68 (73)
18 3l11_A E3 ubiquitin-protein li 99.3 4.4E-13 1.5E-17 106.0 1.5 79 45-139 8-86 (115)
19 2ckl_A Polycomb group ring fin 99.3 9.5E-13 3.2E-17 103.1 3.4 74 47-140 10-84 (108)
20 2ysj_A Tripartite motif-contai 99.3 3.1E-12 1.1E-16 90.4 5.7 51 45-109 13-63 (63)
21 4ayc_A E3 ubiquitin-protein li 99.3 1.4E-12 4.7E-17 106.7 3.1 48 49-113 50-97 (138)
22 3ng2_A RNF4, snurf, ring finge 99.3 2.3E-12 7.9E-17 92.8 3.8 55 47-114 5-62 (71)
23 1jm7_B BARD1, BRCA1-associated 99.3 5.8E-13 2E-17 105.9 0.3 71 45-141 15-86 (117)
24 2yur_A Retinoblastoma-binding 99.3 3.3E-12 1.1E-16 93.5 4.3 53 46-113 9-62 (74)
25 2ckl_B Ubiquitin ligase protei 99.2 3.6E-12 1.2E-16 107.0 4.9 76 45-142 47-123 (165)
26 2c2l_A CHIP, carboxy terminus 99.2 6.1E-12 2.1E-16 112.5 5.8 72 48-142 204-275 (281)
27 2ecy_A TNF receptor-associated 99.2 5.8E-12 2E-16 89.9 3.9 51 47-113 10-60 (66)
28 1jm7_A BRCA1, breast cancer ty 99.2 1.7E-12 5.7E-17 101.7 1.1 71 47-138 16-86 (112)
29 2d8t_A Dactylidin, ring finger 99.2 4E-12 1.4E-16 92.2 2.7 49 48-113 11-59 (71)
30 3hct_A TNF receptor-associated 99.2 9.9E-12 3.4E-16 98.9 5.1 71 46-139 12-82 (118)
31 2ea6_A Ring finger protein 4; 99.2 7.1E-12 2.4E-16 89.5 3.8 54 47-113 10-66 (69)
32 2f42_A STIP1 homology and U-bo 99.2 1.7E-11 5.8E-16 105.0 5.8 74 46-142 100-173 (179)
33 2ecj_A Tripartite motif-contai 99.1 1.8E-11 6.3E-16 84.5 3.3 37 47-87 10-46 (58)
34 1g25_A CDK-activating kinase a 99.1 1.8E-11 6.3E-16 87.0 3.1 52 51-114 2-54 (65)
35 2ect_A Ring finger protein 126 99.1 2.7E-11 9.3E-16 89.0 3.7 54 47-114 10-63 (78)
36 2xeu_A Ring finger protein 4; 99.1 2.2E-11 7.7E-16 85.6 2.9 51 51-114 2-55 (64)
37 3knv_A TNF receptor-associated 99.1 3E-11 1E-15 99.5 3.8 52 46-113 25-76 (141)
38 3htk_C E3 SUMO-protein ligase 99.1 7.4E-11 2.5E-15 106.2 6.3 79 40-140 169-250 (267)
39 2ecm_A Ring finger and CHY zin 99.1 4.6E-11 1.6E-15 81.7 3.8 50 51-113 4-53 (55)
40 2kiz_A E3 ubiquitin-protein li 99.1 8.8E-11 3E-15 84.2 5.0 54 47-114 9-62 (69)
41 1bor_A Transcription factor PM 99.1 1.3E-11 4.5E-16 85.7 0.2 46 49-114 3-48 (56)
42 1rmd_A RAG1; V(D)J recombinati 99.1 4.4E-11 1.5E-15 94.5 3.1 52 47-114 18-69 (116)
43 1x4j_A Ring finger protein 38; 99.1 1.2E-10 4.1E-15 85.0 4.7 52 48-113 19-70 (75)
44 3hcs_A TNF receptor-associated 99.0 1.1E-10 3.9E-15 98.1 5.0 71 46-139 12-82 (170)
45 2ep4_A Ring finger protein 24; 99.0 1.2E-10 4E-15 84.7 3.4 54 47-114 10-63 (74)
46 1e4u_A Transcriptional repress 99.0 1.2E-10 4.1E-15 86.6 2.6 54 47-114 6-61 (78)
47 1chc_A Equine herpes virus-1 r 99.0 1.5E-10 5.2E-15 82.6 2.9 48 50-114 3-51 (68)
48 1iym_A EL5; ring-H2 finger, ub 99.0 1.2E-10 4E-15 79.8 1.9 51 49-113 2-53 (55)
49 2l0b_A E3 ubiquitin-protein li 99.0 2.8E-10 9.6E-15 86.5 3.5 52 48-113 36-87 (91)
50 4ap4_A E3 ubiquitin ligase RNF 98.9 2.4E-10 8.1E-15 91.2 2.6 52 50-114 5-59 (133)
51 2ecn_A Ring finger protein 141 98.9 1.8E-10 6.2E-15 82.8 0.5 50 47-114 10-59 (70)
52 4ic3_A E3 ubiquitin-protein li 98.9 1.4E-10 4.6E-15 85.1 -0.4 49 45-114 17-66 (74)
53 1v87_A Deltex protein 2; ring- 98.9 6.5E-10 2.2E-14 87.3 3.4 55 51-113 24-92 (114)
54 2ecg_A Baculoviral IAP repeat- 98.9 2.6E-10 9E-15 83.6 0.5 49 45-114 18-67 (75)
55 2ecl_A Ring-box protein 2; RNF 98.8 3.7E-09 1.3E-13 78.7 4.4 50 51-113 14-74 (81)
56 4ap4_A E3 ubiquitin ligase RNF 98.8 2.6E-09 8.9E-14 85.1 2.9 56 46-114 66-124 (133)
57 2y1n_A E3 ubiquitin-protein li 98.7 1.1E-08 3.7E-13 97.0 4.6 50 49-114 329-378 (389)
58 2vje_A E3 ubiquitin-protein li 98.6 1.2E-08 4.1E-13 72.6 2.5 48 50-114 6-56 (64)
59 1wim_A KIAA0161 protein; ring 98.6 8.7E-09 3E-13 78.5 1.1 53 51-112 4-61 (94)
60 3dpl_R Ring-box protein 1; ubi 98.6 3.3E-08 1.1E-12 77.6 3.6 50 51-113 36-99 (106)
61 2vje_B MDM4 protein; proto-onc 98.5 2.9E-08 9.9E-13 70.4 2.8 47 51-114 6-55 (63)
62 2yho_A E3 ubiquitin-protein li 98.5 7.3E-09 2.5E-13 76.9 -0.8 47 47-114 13-60 (79)
63 2ea5_A Cell growth regulator w 98.5 3.5E-08 1.2E-12 71.2 2.9 45 49-114 12-57 (68)
64 3t6p_A Baculoviral IAP repeat- 98.4 2.8E-08 9.7E-13 93.1 0.4 49 45-114 288-337 (345)
65 2d8s_A Cellular modulator of i 98.4 2.4E-07 8.2E-12 69.0 4.6 51 50-113 13-68 (80)
66 2bay_A PRE-mRNA splicing facto 98.4 1.3E-07 4.6E-12 66.8 2.9 46 52-114 3-49 (61)
67 4a0k_B E3 ubiquitin-protein li 98.3 7.7E-08 2.6E-12 76.8 0.2 50 51-113 47-110 (117)
68 2ct0_A Non-SMC element 1 homol 97.8 6E-06 2E-10 60.6 2.3 51 50-114 13-63 (74)
69 3k1l_B Fancl; UBC, ring, RWD, 97.7 1.9E-05 6.3E-10 73.7 3.0 65 48-114 304-372 (381)
70 3vk6_A E3 ubiquitin-protein li 97.6 3E-05 1E-09 59.8 3.5 48 54-116 3-50 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00016 5.4E-09 50.6 3.6 49 50-113 4-57 (60)
72 2jun_A Midline-1; B-BOX, TRIM, 96.2 0.0014 4.9E-08 49.7 1.6 32 51-86 2-36 (101)
73 3m62_A Ubiquitin conjugation f 94.8 0.015 5.1E-07 60.7 3.4 74 46-143 885-959 (968)
74 3nw0_A Non-structural maintena 94.6 0.023 8E-07 50.1 3.9 49 51-114 179-228 (238)
75 2ko5_A Ring finger protein Z; 93.8 0.05 1.7E-06 41.3 3.6 48 47-113 23-71 (99)
76 3i2d_A E3 SUMO-protein ligase 82.3 0.67 2.3E-05 43.4 2.7 69 48-138 245-316 (371)
77 2cs3_A Protein C14ORF4, MY039 80.5 2 6.8E-05 31.6 4.1 38 50-91 13-54 (93)
78 4fo9_A E3 SUMO-protein ligase 77.4 1.6 5.4E-05 40.7 3.6 70 47-138 210-282 (360)
79 3zyq_A Hepatocyte growth facto 55.0 7.4 0.00025 33.5 3.0 33 52-85 164-197 (226)
80 2zet_C Melanophilin; complex, 51.2 8.2 0.00028 31.5 2.5 50 51-112 67-117 (153)
81 1weu_A Inhibitor of growth fam 49.6 26 0.0009 26.0 4.9 48 48-112 32-85 (91)
82 3t7l_A Zinc finger FYVE domain 49.4 6.4 0.00022 29.0 1.4 34 51-85 19-53 (90)
83 3mjh_B Early endosome antigen 49.4 4.1 0.00014 24.9 0.3 15 50-64 3-17 (34)
84 1z2q_A LM5-1; membrane protein 48.6 7.5 0.00026 28.2 1.7 35 50-85 19-54 (84)
85 2yw8_A RUN and FYVE domain-con 47.3 7.6 0.00026 28.0 1.5 34 51-85 18-52 (82)
86 1weo_A Cellulose synthase, cat 46.7 18 0.00062 27.0 3.5 51 51-113 15-68 (93)
87 1zbd_B Rabphilin-3A; G protein 46.0 8.4 0.00029 30.7 1.7 54 50-112 53-107 (134)
88 1wfl_A Zinc finger protein 216 45.9 24 0.00083 25.3 4.0 30 50-82 23-52 (74)
89 1vfy_A Phosphatidylinositol-3- 45.2 9.9 0.00034 26.7 1.9 31 53-84 12-43 (73)
90 1wfk_A Zinc finger, FYVE domai 45.1 7.8 0.00027 28.5 1.3 35 50-85 7-42 (88)
91 2ct7_A Ring finger protein 31; 43.8 7.7 0.00026 28.2 1.1 33 54-86 27-61 (86)
92 2o35_A Hypothetical protein DU 43.5 9.6 0.00033 29.0 1.6 15 77-91 42-56 (105)
93 1joc_A EEA1, early endosomal a 43.1 8.8 0.0003 30.0 1.4 34 51-85 68-102 (125)
94 3fyb_A Protein of unknown func 42.9 10 0.00034 28.9 1.6 14 77-90 41-54 (104)
95 1x4u_A Zinc finger, FYVE domai 42.3 9.8 0.00034 27.5 1.5 33 51-84 13-46 (84)
96 2k16_A Transcription initiatio 38.7 32 0.0011 23.9 3.8 52 49-113 15-69 (75)
97 1we9_A PHD finger family prote 37.5 17 0.00056 24.6 2.0 53 49-112 3-58 (64)
98 2lv9_A Histone-lysine N-methyl 37.4 23 0.00078 26.4 2.9 47 50-111 26-75 (98)
99 1y02_A CARP2, FYVE-ring finger 36.2 10 0.00035 29.7 0.8 34 51-85 18-52 (120)
100 2jmo_A Parkin; IBR, E3 ligase, 36.1 3.4 0.00011 29.9 -1.9 35 52-86 25-68 (80)
101 2lri_C Autoimmune regulator; Z 35.5 13 0.00044 25.8 1.1 47 51-112 11-59 (66)
102 2gsm_B Cytochrome C oxidase su 35.5 53 0.0018 28.9 5.4 18 254-271 80-97 (262)
103 1dvp_A HRS, hepatocyte growth 33.7 12 0.00042 31.8 0.9 34 51-85 160-194 (220)
104 1wd2_A Ariadne-1 protein homol 33.7 2.5 8.5E-05 29.1 -2.8 35 52-86 6-44 (60)
105 2l5u_A Chromodomain-helicase-D 30.5 19 0.00066 24.3 1.3 47 50-111 9-57 (61)
106 2jne_A Hypothetical protein YF 28.0 3.6 0.00012 31.2 -3.0 40 53-114 33-72 (101)
107 4rxn_A Rubredoxin; electron tr 27.7 43 0.0015 22.4 2.7 13 52-64 3-15 (54)
108 3mpx_A FYVE, rhogef and PH dom 26.4 14 0.00048 34.2 0.0 36 50-86 373-409 (434)
109 1v54_B Cytochrome C oxidase po 26.2 82 0.0028 27.0 5.0 17 254-270 66-82 (227)
110 1wen_A Inhibitor of growth fam 25.9 64 0.0022 22.5 3.5 47 50-112 14-65 (71)
111 1wil_A KIAA1045 protein; ring 25.6 31 0.0011 25.5 1.8 59 51-111 14-75 (89)
112 2kn9_A Rubredoxin; metalloprot 25.6 50 0.0017 24.0 2.9 14 51-64 26-39 (81)
113 3ql9_A Transcriptional regulat 25.4 2.4E+02 0.0083 22.0 7.2 49 51-111 56-110 (129)
114 2lbm_A Transcriptional regulat 25.0 53 0.0018 26.3 3.2 49 51-111 62-116 (142)
115 1f62_A Transcription factor WS 24.8 14 0.00048 23.8 -0.2 47 54-112 2-50 (51)
116 3o70_A PHD finger protein 13; 23.5 35 0.0012 23.6 1.7 49 48-111 15-66 (68)
117 3hb3_B Cytochrome C oxidase su 23.1 1.1E+02 0.0039 27.3 5.4 21 252-272 109-129 (298)
118 1x62_A C-terminal LIM domain p 22.5 49 0.0017 22.8 2.3 28 52-83 15-42 (79)
119 2gmg_A Hypothetical protein PF 21.8 28 0.00095 26.6 0.9 8 105-112 86-93 (105)
120 1wfe_A Riken cDNA 2310008M20 p 21.5 94 0.0032 22.6 3.7 28 50-81 23-53 (86)
121 1wg2_A Zinc finger (AN1-like) 21.1 67 0.0023 22.3 2.7 29 51-82 14-42 (64)
122 1dx8_A Rubredoxin; electron tr 20.4 75 0.0025 22.3 2.9 14 51-64 6-19 (70)
No 1
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=109.55 Aligned_cols=77 Identities=21% Similarity=0.408 Sum_probs=62.4
Q ss_pred ccCCCCccccccccccccccCCCcEEec-CCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
...+++.+.|+||++.|.+ |++++ |||+||..||.+|+.... ...||.||.... ....
T Consensus 7 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-----------~~~CP~Cr~~~~------~~~~ 65 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESD-----------EHTCPTCHQNDV------SPDA 65 (92)
T ss_dssp CCCCCTTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCT-----------TCCCTTTCCSSC------CTTS
T ss_pred cccCCcCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcC-----------CCcCcCCCCcCC------Cccc
Confidence 3566789999999999999 99999 999999999999954322 126999998741 1457
Q ss_pred CcchHHHHHHHHHHhcccC
Q 023737 125 PQKNYYLLWMVESMNGDRS 143 (278)
Q Consensus 125 ~~~N~~l~~lve~~~~~~~ 143 (278)
+..|..+.++++.+++..+
T Consensus 66 ~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 66 LIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CEECHHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHHh
Confidence 7899999999999887553
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.48 E-value=2.1e-14 Score=105.81 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=60.2
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCcc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQK 127 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~ 127 (278)
...+.+.|+||++.|.+ |++++|||+||+.|+.+|+... ...||.||.... ...+..
T Consensus 4 ~~~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~------------~~~CP~C~~~~~-------~~~l~~ 60 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAG------------HKTCPKSQETLL-------HAGLTP 60 (78)
T ss_dssp CCSSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTT------------CCBCTTTCCBCS-------SCCCEE
T ss_pred CCcccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHC------------cCCCCCCcCCCC-------hhhCcc
Confidence 45688999999999999 9999999999999999995431 126999998864 457788
Q ss_pred hHHHHHHHHHHhccc
Q 023737 128 NYYLLWMVESMNGDR 142 (278)
Q Consensus 128 N~~l~~lve~~~~~~ 142 (278)
|..+.++++.+.+..
T Consensus 61 n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 61 NYVLKSLIALWCESN 75 (78)
T ss_dssp CTTTHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999887654
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=3.5e-14 Score=107.34 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=62.2
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
......+++.||||+++|.+ |++++|||+||+.||.+|+.... .||.||.... ...
T Consensus 7 ~~~~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~~~~-------------~cP~~~~~l~-------~~~ 62 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDTLMTD----PVRLPSGTVMDRSIILRHLLNSP-------------TDPFNRQMLT-------ESM 62 (85)
T ss_dssp CCTTCCTTTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHCS-------------BCTTTCCBCC-------GGG
T ss_pred hhhcCchheECcccCchhcC----CeECCCCCEECHHHHHHHHhcCC-------------CCCCCcCCCC-------hHh
Confidence 34556789999999999999 99999999999999999954321 6999998764 467
Q ss_pred CcchHHHHHHHHHHhccc
Q 023737 125 PQKNYYLLWMVESMNGDR 142 (278)
Q Consensus 125 ~~~N~~l~~lve~~~~~~ 142 (278)
+..|..+.++++.+...+
T Consensus 63 l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 63 LEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CEECHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHh
Confidence 889999999999887654
No 4
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.45 E-value=1.2e-13 Score=107.28 Aligned_cols=75 Identities=15% Similarity=0.018 Sum_probs=63.0
Q ss_pred cccCCCCccccccccccccccCCCcEEecCC-CcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 123 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CG-HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~ 123 (278)
......+++.||||+++|.+ |++++|| |+||+.||.+|+.. . . .||.||.... ..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~d----PV~~~cG~htf~r~cI~~~l~~-~---~---------~cP~~~~~l~-------~~ 70 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCD----PVVLPSSRVTVDRSTIARHLLS-D---Q---------TDPFNRSPLT-------MD 70 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHTTT-S---C---------BCTTTCSBCC-------TT
T ss_pred hhhcCcHhcCCcCccccccC----CeECCCCCeEECHHHHHHHHHh-C---C---------CCCCCCCCCC-------hh
Confidence 34566789999999999999 9999999 99999999999432 1 1 6999998865 56
Q ss_pred CCcchHHHHHHHHHHhcccC
Q 023737 124 FPQKNYYLLWMVESMNGDRS 143 (278)
Q Consensus 124 ~~~~N~~l~~lve~~~~~~~ 143 (278)
.+..|..++++++.+...+.
T Consensus 71 ~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 71 QIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp TSEECHHHHHHHHHHHHHST
T ss_pred hceEcHHHHHHHHHHHHHcc
Confidence 78899999999999876654
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.45 E-value=1.6e-13 Score=106.98 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=63.1
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
.....+.+.||||+++|.+ |++++|||+||+.||.+|+. .. ..||.||.... ...+
T Consensus 23 ~~~~p~~~~CpI~~~~m~d----PV~~~cGhtf~r~~I~~~l~-~~------------~~cP~~~~~l~-------~~~L 78 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTD----PVRLPSGTIMDRSIILRHLL-NS------------PTDPFNRQTLT-------ESML 78 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSS----EEEETTTEEEEHHHHHHHTT-SC------------SBCSSSCCBCC-------TTSS
T ss_pred hccCcHhhCCcCccCcccC----CeECCCCCEEchHHHHHHHH-cC------------CCCCCCCCCCC-------hhhc
Confidence 3456789999999999999 99999999999999999943 21 16999999865 5678
Q ss_pred cchHHHHHHHHHHhcccCC
Q 023737 126 QKNYYLLWMVESMNGDRSK 144 (278)
Q Consensus 126 ~~N~~l~~lve~~~~~~~~ 144 (278)
..|..+.++++.+...+.+
T Consensus 79 ~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 79 EPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp EECHHHHHHHHHHHHTTTC
T ss_pred eECHHHHHHHHHHHHHhhh
Confidence 8999999999998876543
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.42 E-value=3.5e-14 Score=109.52 Aligned_cols=74 Identities=27% Similarity=0.519 Sum_probs=61.2
Q ss_pred ccCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
...+++.+.|+||++.|.+ |+++ +|||+||..|+.+|+... ..||.||..+. ...
T Consensus 16 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~-------------~~CP~Cr~~~~-------~~~ 71 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLSYK-------------TQCPTCCVTVT-------EPD 71 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTC-------------CBCTTTCCBCC-------GGG
T ss_pred HHhCCCCCCcccCChhhCC----cCEECCCCCHhhHHHHHHHHHCC-------------CCCCCCCCcCC-------hhh
Confidence 3455678999999999999 9999 999999999999985432 16999998864 356
Q ss_pred CcchHHHHHHHHHHhcccC
Q 023737 125 PQKNYYLLWMVESMNGDRS 143 (278)
Q Consensus 125 ~~~N~~l~~lve~~~~~~~ 143 (278)
+..|+.+.++++.+++.+.
T Consensus 72 l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 72 LKNNRILDELVKSLNFARN 90 (99)
T ss_dssp CEECHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 7889999999998876553
No 7
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=108.87 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=59.8
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 126 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 126 (278)
..+++.+.|+||++.|.+ |++++|||+||..|+..|+... ...||.||..+. ....+.
T Consensus 47 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~------~~~~~~ 104 (124)
T 3fl2_A 47 SKVEETFQCICCQELVFR----PITTVCQHNVCKDCLDRSFRAQ------------VFSCPACRYDLG------RSYAMQ 104 (124)
T ss_dssp HHHHHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTT------------CCBCTTTCCBCC------TTCCCC
T ss_pred HhCccCCCCCcCChHHcC----cEEeeCCCcccHHHHHHHHhHC------------cCCCCCCCccCC------CCCCCC
Confidence 445678999999999999 9999999999999999985421 126999998864 125678
Q ss_pred chHHHHHHHHHHhccc
Q 023737 127 KNYYLLWMVESMNGDR 142 (278)
Q Consensus 127 ~N~~l~~lve~~~~~~ 142 (278)
.|..+.++++.+....
T Consensus 105 ~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 105 VNQPLQTVLNQLFPGY 120 (124)
T ss_dssp CCHHHHHHHHHHSTTT
T ss_pred CCHHHHHHHHHHcccc
Confidence 9999999999876543
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.37 E-value=7.3e-14 Score=108.37 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=60.1
Q ss_pred cccCCCCccccccccccccccCCCcEE-ecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYV-LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 123 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~-L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~ 123 (278)
....+++.+.|+||++.|.+ |+. ++|||+||..||.+|+.... ..||.||..+. ..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~------------~~CP~Cr~~~~-------~~ 71 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLRD----ARLCPHCSKLCCFSCIRRWLTEQR------------AQCPHCRAPLQ-------LR 71 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHHHTC------------SBCTTTCCBCC-------GG
T ss_pred ccccCCCCCCCccCCccccC----ccccCCCCChhhHHHHHHHHHHCc------------CCCCCCCCcCC-------HH
Confidence 34567889999999999999 999 89999999999999965431 16999999864 45
Q ss_pred CCcchHHHHHHHHHHhccc
Q 023737 124 FPQKNYYLLWMVESMNGDR 142 (278)
Q Consensus 124 ~~~~N~~l~~lve~~~~~~ 142 (278)
.+..|..+..+++.+++.+
T Consensus 72 ~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 72 ELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp GCEECTTHHHHHHHHHHHC
T ss_pred HhHhhHHHHHHHHHHHHHH
Confidence 6667777777777766544
No 9
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=1.5e-13 Score=102.03 Aligned_cols=58 Identities=24% Similarity=0.468 Sum_probs=45.8
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...+++.++|+||++.+.+ |++++|||+||..|+..|+...... .....||.||..+.
T Consensus 13 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~-------~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKE----PVSADCNHSFCRACITLNYESNRNT-------DGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSS----CEECTTSCCBCHHHHHHHHHHSBCT-------TSCBCCTTTCCCCC
T ss_pred HHhCccCCCCcCCChhhCc----ceeCCCCCHHHHHHHHHHHHhccCC-------CCCCCCCCCCCcCC
Confidence 3456788999999999999 9999999999999999996553210 11347999998764
No 10
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=99.33 Aligned_cols=66 Identities=24% Similarity=0.476 Sum_probs=50.3
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 126 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 126 (278)
...++.+.|+||++.+.+ |++++|||+||..|+.+|+.... .||.||..+. ..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~-------------~CP~Cr~~~~--------~~~~ 64 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRATP-------------RCYICDQPTG--------GIFN 64 (81)
T ss_dssp SCCCCCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHHCS-------------BCSSSCCBCC--------SCCE
T ss_pred ccCCCCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHCCC-------------cCCCcCcccc--------ccCC
Confidence 345678899999999999 99999999999999999965422 6999998753 3444
Q ss_pred chHHHHHHHHHHhc
Q 023737 127 KNYYLLWMVESMNG 140 (278)
Q Consensus 127 ~N~~l~~lve~~~~ 140 (278)
.|. .+++.+++
T Consensus 65 ~~~---~l~~~~~~ 75 (81)
T 2csy_A 65 PAK---ELMAKLQK 75 (81)
T ss_dssp ECH---HHHHHHSS
T ss_pred cHH---HHHHHHHh
Confidence 554 44555544
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-13 Score=100.49 Aligned_cols=70 Identities=36% Similarity=0.726 Sum_probs=52.9
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 126 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 126 (278)
..+++.++|+||++.|.+.++.|++++|||+||..|+.+|+..... ...||.||..+. ......+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~----------~~~CP~Cr~~~~----~~~i~~l~ 75 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSIN----------GVRCPFCSKITR----ITSLTQLT 75 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSS----------CBCCTTTCCCBC----CSSTTTSE
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCC----------CcCCCCCCCccc----chhHHHHH
Confidence 4567889999999999998878999999999999999999654311 237999998753 12234444
Q ss_pred chHH
Q 023737 127 KNYY 130 (278)
Q Consensus 127 ~N~~ 130 (278)
.|+.
T Consensus 76 ~n~~ 79 (88)
T 2ct2_A 76 DNLT 79 (88)
T ss_dssp ECTT
T ss_pred HHHH
Confidence 5543
No 12
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-13 Score=102.73 Aligned_cols=57 Identities=28% Similarity=0.638 Sum_probs=45.4
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+++.+.|+||++.+.+ |++++|||+||..|+..|+....... ....||.||..+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~-------~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDK-------GESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTT-------SCCCCTTTCCSSC
T ss_pred HHccCCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCC-------CCCcCCCCCCccC
Confidence 456788999999999999 99999999999999999965522111 1337999998764
No 13
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-12 Score=99.61 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=61.4
Q ss_pred CCCCccccccccccccccCCCcEEec-CCCcchHHHHHHHHHhhccCCCCCCCCCCcccccc--cccc-cccccccCCCC
Q 023737 48 SREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPW--CNMV-SLRLICKGNLK 123 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~--CR~~-~~~~~~~~~~~ 123 (278)
...+.+.||||+++|.+ |++++ |||+||+.||.+|+....+.. ....||. |+.. .. ..
T Consensus 3 ~~~~~~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~l~~~~~~~-------~~~~CP~tgc~~~~l~-------~~ 64 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKK----PVKNKVCGHTYEEDAIVRMIESRQKRK-------KKAYCPQIGCSHTDIR-------KS 64 (94)
T ss_dssp SCSSCCBCTTTCSBCSS----EEEESSSCCEEEHHHHHHHHHHHHTTT-------CCBCCCSTTCCCCCBC-------GG
T ss_pred CCCcEeECcCcCchhcC----CEEcCCCCCeecHHHHHHHHHHccCcC-------CCCCCCcCcCcccccC-------Hh
Confidence 34678999999999999 99995 999999999999965432100 1236999 9854 43 46
Q ss_pred CCcchHHHHHHHHHHhcccCC
Q 023737 124 FPQKNYYLLWMVESMNGDRSK 144 (278)
Q Consensus 124 ~~~~N~~l~~lve~~~~~~~~ 144 (278)
.+..|..+..+++.++....+
T Consensus 65 ~L~pn~~L~~~I~~~~~~~~r 85 (94)
T 2yu4_A 65 DLIQDEALRRAIENHNKKRHR 85 (94)
T ss_dssp GEEECHHHHHHHHHHHTTCCS
T ss_pred hCcCCHHHHHHHHHHHHHhcc
Confidence 778999999999999866543
No 14
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=109.18 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=58.8
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCC-CCcc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK-FPQK 127 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~-~~~~ 127 (278)
+++.+.|+||++.|.+ |++++|||+||..|+.+|+... ...||.||..+. .. .+..
T Consensus 75 l~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~-------~~~~l~~ 131 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQ------------VFSCPACRHDLG-------QNYIMIP 131 (150)
T ss_dssp HHHHTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTT------------CCBCTTTCCBCC-------TTCCCCB
T ss_pred CccCCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhC------------CCcCCCCCccCC-------CCCCCCC
Confidence 4577899999999999 9999999999999999996532 126999999864 23 6789
Q ss_pred hHHHHHHHHHHhccc
Q 023737 128 NYYLLWMVESMNGDR 142 (278)
Q Consensus 128 N~~l~~lve~~~~~~ 142 (278)
|..+.++++.+....
T Consensus 132 n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 132 NEILQTLLDLFFPGY 146 (150)
T ss_dssp CHHHHHHHHHHSTTT
T ss_pred CHHHHHHHHHHhhHh
Confidence 999999999887544
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=94.17 Aligned_cols=52 Identities=27% Similarity=0.486 Sum_probs=44.4
Q ss_pred ccCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...+++.+.|+||++.+.+ |+++ +|||+||..|+.+|+.... .||.||..+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-------------~CP~Cr~~~~ 61 (72)
T 2djb_A 9 LSELTPYILCSICKGYLID----ATTITECLHTFCKSCIVRHFYYSN-------------RCPKCNIVVH 61 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHHHCS-------------SCTTTCCCCC
T ss_pred HhhcCCCCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHHcCC-------------cCCCcCcccC
Confidence 3556789999999999999 9998 9999999999999965422 6999998764
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.30 E-value=2.9e-14 Score=105.00 Aligned_cols=59 Identities=29% Similarity=0.701 Sum_probs=45.1
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...+++.++|+||++.+.+ |++++|||+||..|+.+|+..... .......||.||..+.
T Consensus 6 ~~~~~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~------~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVT------SMGGKSSCPVCGISYS 64 (79)
T ss_dssp SCCCCCCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSS------SCCCCCCCSSSCCCCC
T ss_pred HhhcccCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhccc------CCCCCCcCCCCCCcCC
Confidence 3556789999999999999 999999999999999987432110 0012347999998864
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=93.76 Aligned_cols=56 Identities=29% Similarity=0.736 Sum_probs=44.9
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....+++.+.|+||++.+.+ |++++|||+||..|+.+|+.... ....||.||..+.
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~----------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSC----------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSS----EEECTTCCEEEHHHHHHHCSSSC----------SCCCCSSSCCCCC
T ss_pred HHHhCccCCEeccCCcccCC----eEEcCCCChhhHHHHHHHHHcCC----------CCCCCCCCCCcCC
Confidence 34566788999999999999 99999999999999999843211 1236999998753
No 18
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=4.4e-13 Score=106.01 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=56.3
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
.....++++.|+||++.+.+ |++++|||+||..|+.+|+... ...||.||..+...........
T Consensus 8 ~~~~~~~~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~~~~~~~~~~~ 71 (115)
T 3l11_A 8 DAIPSLSECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKA------------SLCCPFCRRRVSSWTRYHTRRN 71 (115)
T ss_dssp TCCCCHHHHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTT------------TSBCTTTCCBCHHHHHHHHHTT
T ss_pred cccCCCCCCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHC------------cCCCCCCCcccCcccccccccc
Confidence 34556688999999999999 9999999999999999874321 2369999997641000011244
Q ss_pred CcchHHHHHHHHHHh
Q 023737 125 PQKNYYLLWMVESMN 139 (278)
Q Consensus 125 ~~~N~~l~~lve~~~ 139 (278)
...|..+..+++++.
T Consensus 72 ~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 72 SLVNVELWTIIQKHY 86 (115)
T ss_dssp CCBCHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHC
Confidence 557778877776553
No 19
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.29 E-value=9.5e-13 Score=103.07 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=57.8
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
..+++.+.|+||++.+.+ |+.+ +|||+||..|+.+|+... ..||.||..+. .......+
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~-------------~~CP~Cr~~~~---~~~~~~~l 69 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLETS-------------KYCPICDVQVH---KTRPLLNI 69 (108)
T ss_dssp HHHGGGTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHTSC-------------SBCTTTCCBSC---SSCGGGGE
T ss_pred hccCCcCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHHhC-------------CcCcCCCcccc---ccCccccc
Confidence 456789999999999999 9998 999999999999985432 16999998754 11112256
Q ss_pred cchHHHHHHHHHHhc
Q 023737 126 QKNYYLLWMVESMNG 140 (278)
Q Consensus 126 ~~N~~l~~lve~~~~ 140 (278)
..|..+.++++.+..
T Consensus 70 ~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 70 RSDKTLQDIVYKLVP 84 (108)
T ss_dssp EECHHHHHHHHHHST
T ss_pred CcCHHHHHHHHHHhh
Confidence 788999999887654
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.1e-12 Score=90.41 Aligned_cols=51 Identities=31% Similarity=0.861 Sum_probs=42.0
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWC 109 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~C 109 (278)
....++++++|+||++.+.+ |++++|||+||..|+.+|+..... ...||.|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~----------~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQK----PVTIDCGHNFCLKCITQIGETSCG----------FFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSS----CEECTTSSEECHHHHHHHHHHCSS----------CCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCC----eEEeCCCCcchHHHHHHHHHcCCC----------CCcCcCC
Confidence 34567789999999999999 999999999999999999653211 2269988
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.27 E-value=1.4e-12 Score=106.72 Aligned_cols=48 Identities=33% Similarity=0.695 Sum_probs=41.0
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+++++.|+||++.|.+ |++++|||+||..|+..|+.... .||.||..+
T Consensus 50 ~~~~~~C~iC~~~~~~----~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~ 97 (138)
T 4ayc_A 50 LENELQCIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKI-------------ECPICRKDI 97 (138)
T ss_dssp HHHHSBCTTTCSBCSS----EEEETTSCEEEHHHHHHHTTTCS-------------BCTTTCCBC
T ss_pred ccccCCCcccCcccCC----ceECCCCCCccHHHHHHHHHcCC-------------cCCCCCCcC
Confidence 4567899999999999 99999999999999999843221 699999875
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2.3e-12 Score=92.79 Aligned_cols=55 Identities=25% Similarity=0.612 Sum_probs=42.8
Q ss_pred cCCCCcccccccccccccc---CCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...++..+|+||++.+.+. ++.++.++|||+||..|+.+|+.... .||.||..+.
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-------------BCTTTCCBCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-------------CCCCCCCccC
Confidence 3456788999999999981 12228889999999999999965432 6999998754
No 23
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=5.8e-13 Score=105.94 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=59.4
Q ss_pred cccCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 123 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~ 123 (278)
....+++.+.|+||++.|.+ |+++ +|||+||..|+..|+. ..||.||..+. ..
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~---------------~~CP~Cr~~~~-------~~ 68 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG---------------TGCPVCYTPAW-------IQ 68 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT---------------TBCSSSCCBCS-------CS
T ss_pred HHHhchhCCCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc---------------CCCcCCCCcCc-------cc
Confidence 34566789999999999999 9999 9999999999998732 16999999864 56
Q ss_pred CCcchHHHHHHHHHHhcc
Q 023737 124 FPQKNYYLLWMVESMNGD 141 (278)
Q Consensus 124 ~~~~N~~l~~lve~~~~~ 141 (278)
.+..|+.+.++++.+++.
T Consensus 69 ~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 69 DLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp SCCCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 788899999999877643
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=93.51 Aligned_cols=53 Identities=25% Similarity=0.528 Sum_probs=44.2
Q ss_pred ccCCCCccccccccccccccCCCcEEec-CCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...+++.+.|+||++.|.+ |++++ |||+||..|+.+|+.... ...||.||...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~-----------~~~CP~Cr~~~ 62 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESD-----------EHTCPTCHQND 62 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSS-----------SSCCSSSCCSS
T ss_pred cccCCCCCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcC-----------CCcCCCCCCcC
Confidence 3556789999999999999 99998 999999999999965431 12699999863
No 25
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.25 E-value=3.6e-12 Score=107.00 Aligned_cols=76 Identities=20% Similarity=0.408 Sum_probs=58.1
Q ss_pred cccCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCC
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 123 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~ 123 (278)
....+++.+.|+||++.|.+ |+.+ +|||+||..|+..|+.... ..||.||..+. ...
T Consensus 47 ~~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~------------~~CP~Cr~~~~------~~~ 104 (165)
T 2ckl_B 47 SPRSLHSELMCPICLDMLKN----TMTTKECLHRFCADCIITALRSGN------------KECPTCRKKLV------SKR 104 (165)
T ss_dssp ---CCHHHHBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHHTTC------------CBCTTTCCBCC------SGG
T ss_pred chhhCCCCCCCcccChHhhC----cCEeCCCCChhHHHHHHHHHHhCc------------CCCCCCCCcCC------Ccc
Confidence 34566788999999999999 9998 9999999999999965321 16999998752 134
Q ss_pred CCcchHHHHHHHHHHhccc
Q 023737 124 FPQKNYYLLWMVESMNGDR 142 (278)
Q Consensus 124 ~~~~N~~l~~lve~~~~~~ 142 (278)
.+..|..+.++++.+....
T Consensus 105 ~l~~~~~l~~~i~~~~~~~ 123 (165)
T 2ckl_B 105 SLRPDPNFDALISKIYPSR 123 (165)
T ss_dssp GEEECHHHHHHHHHHC---
T ss_pred cCCcCHHHHHHHHHHHcch
Confidence 5678999999999887644
No 26
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.23 E-value=6.1e-12 Score=112.50 Aligned_cols=72 Identities=13% Similarity=0.018 Sum_probs=60.5
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCcc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQK 127 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~~ 127 (278)
...+.+.||||.++|.+ |++++|||+||+.||.+|+..... .||.||.... ...+.+
T Consensus 204 ~~~~~~~c~i~~~~~~d----Pv~~~~gh~f~~~~i~~~~~~~~~------------~cP~~~~~~~-------~~~l~~ 260 (281)
T 2c2l_A 204 DIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGH------------FNPVTRSPLT-------QEQLIP 260 (281)
T ss_dssp CCCSTTBCTTTCSBCSS----EEECSSCCEEETTHHHHHHHHTCS------------SCTTTCCCCC-------GGGCEE
T ss_pred CCCcccCCcCcCCHhcC----CeECCCCCEECHHHHHHHHHHCCC------------CCcCCCCCCc-------hhcCcc
Confidence 44578999999999999 999999999999999999544221 4999998864 557889
Q ss_pred hHHHHHHHHHHhccc
Q 023737 128 NYYLLWMVESMNGDR 142 (278)
Q Consensus 128 N~~l~~lve~~~~~~ 142 (278)
|..+..+++.+...+
T Consensus 261 n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 261 NLAMKEVIDAFISEN 275 (281)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHC
Confidence 999999999987654
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.8e-12 Score=89.90 Aligned_cols=51 Identities=24% Similarity=0.552 Sum_probs=42.8
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..+++.+.|+||++.+.+ |++++|||+||..|+.+|+... ...||.||...
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~ 60 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCS----PKQTECGHRFCESCMAALLSSS------------SPKCTACQESI 60 (66)
T ss_dssp CSCCCCEECTTTCCEESS----CCCCSSSCCCCHHHHHHHHTTS------------SCCCTTTCCCC
T ss_pred hcCCcCCCCCCCChHhcC----eeECCCCCHHHHHHHHHHHHhC------------cCCCCCCCcCC
Confidence 456788999999999999 9999999999999999995321 12699999875
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=1.7e-12 Score=101.66 Aligned_cols=71 Identities=31% Similarity=0.531 Sum_probs=51.3
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCCc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFPQ 126 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~~ 126 (278)
..+++.+.|+||++.+.+ |++++|||+||..|+.+|+..... ...||.||.... ...+.
T Consensus 16 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~----------~~~CP~Cr~~~~-------~~~~~ 74 (112)
T 1jm7_A 16 NAMQKILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKG----------PSQCPLCKNDIT-------KRSLQ 74 (112)
T ss_dssp HHHHHHTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSS----------SCCCTTTSCCCC-------TTTCB
T ss_pred HhccCCCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCC----------CCCCcCCCCcCC-------HhhcC
Confidence 345678899999999999 999999999999999999553221 236999999764 33444
Q ss_pred chHHHHHHHHHH
Q 023737 127 KNYYLLWMVESM 138 (278)
Q Consensus 127 ~N~~l~~lve~~ 138 (278)
.|..+..+++.+
T Consensus 75 ~~~~l~~~~~~~ 86 (112)
T 1jm7_A 75 ESTRFSQLVEEL 86 (112)
T ss_dssp CCCSSSHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 454444444433
No 29
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4e-12 Score=92.15 Aligned_cols=49 Identities=29% Similarity=0.529 Sum_probs=41.8
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...+..+|+||++.+.+ |+.++|||.||..|+.+|++... .||.||..+
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~-------------~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGK-------------RCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSS-------------BCSSSCCBC
T ss_pred cCCCCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCC-------------cCcCcCchh
Confidence 34577899999999999 99999999999999999854322 699999875
No 30
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.21 E-value=9.9e-12 Score=98.88 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=55.5
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
...+++.+.|+||++.+.+ |++++|||+||..|+.+|+..... .||.||..+. ...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~------------~CP~Cr~~~~-------~~~~ 68 (118)
T 3hct_A 12 DPPLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGH------------KCPVDNEILL-------ENQL 68 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCS------------BCTTTCCBCC-------GGGC
T ss_pred ccCCCCCCCCCcCChhhcC----eEECCcCChhhHHHHHHHHhhCCC------------CCCCCCCCcC-------HHhc
Confidence 3567789999999999999 999999999999999999655431 5999998764 3344
Q ss_pred cchHHHHHHHHHHh
Q 023737 126 QKNYYLLWMVESMN 139 (278)
Q Consensus 126 ~~N~~l~~lve~~~ 139 (278)
..+..+...++.++
T Consensus 69 ~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 69 FPDNFAKREILSLM 82 (118)
T ss_dssp EECHHHHHHHHTSE
T ss_pred ccCHHHHHHHccce
Confidence 56666666666543
No 31
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=7.1e-12 Score=89.47 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=42.9
Q ss_pred cCCCCcccccccccccccc---CCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 47 NSREEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...++...|+||++.+.+. .+.++.++|||.||..|+.+|+.... .||.||..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~ 66 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKI 66 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-------------SCTTTCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-------------CCCCCCCcc
Confidence 4556789999999999981 22238889999999999999965522 599999864
No 32
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.18 E-value=1.7e-11 Score=104.99 Aligned_cols=74 Identities=12% Similarity=0.006 Sum_probs=62.1
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
.....+.+.||||.++|.+ |++++|||+||+.||..|+..... .||.|+.... ...+
T Consensus 100 ~~~ip~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~------------tcP~t~~~l~-------~~~L 156 (179)
T 2f42_A 100 KREIPDYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGH------------FDPVTRSPLT-------QDQL 156 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCS------------BCTTTCCBCC-------GGGC
T ss_pred ccCCcHhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCC------------CCCCCcCCCC-------hhhC
Confidence 3456789999999999999 999999999999999999544221 5999998764 5678
Q ss_pred cchHHHHHHHHHHhccc
Q 023737 126 QKNYYLLWMVESMNGDR 142 (278)
Q Consensus 126 ~~N~~l~~lve~~~~~~ 142 (278)
.+|..+..+++.+...+
T Consensus 157 ~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 157 IPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp EECHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHC
Confidence 89999999999887654
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.8e-11 Score=84.55 Aligned_cols=37 Identities=27% Similarity=0.757 Sum_probs=33.7
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHH
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQ 87 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~ 87 (278)
..+++.+.|+||++.+.+ |++++|||+||..|+.+|+
T Consensus 10 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKE----PVIIECGHNFCKACITRWW 46 (58)
T ss_dssp SCSCCCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHT
T ss_pred hccccCCCCccCCcccCc----cEeCCCCCccCHHHHHHHH
Confidence 456688999999999999 9999999999999999984
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=1.8e-11 Score=86.98 Aligned_cols=52 Identities=31% Similarity=0.493 Sum_probs=39.6
Q ss_pred Cccccccccc-cccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWE-SFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e-~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
++..|+||++ .+.+....++.++|||+||..|+.+|+.+. ...||.||....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG------------AGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT------------SSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC------------CCcCCCCCCccc
Confidence 5678999999 899822222567999999999999984432 126999998764
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.12 E-value=2.7e-11 Score=88.97 Aligned_cols=54 Identities=28% Similarity=0.586 Sum_probs=41.8
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...++..+|+||++.|.+.+ ..+.++|||.||..|+.+|+.... .||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 63 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGE-SVRQLPCNHLFHDSCIVPWLEQHD-------------SCPVCRKSLT 63 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTS-CEEECTTSCEEETTTTHHHHTTTC-------------SCTTTCCCCC
T ss_pred ccCCCCCCCeeCCccccCCC-CEEEeCCCCeecHHHHHHHHHcCC-------------cCcCcCCccC
Confidence 34567889999999998722 235679999999999999954322 6999998753
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=2.2e-11 Score=85.56 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=40.7
Q ss_pred Ccccccccccccccc---CCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+..+|+||++.+.+. .+.++.++|||.||..|+.+|+..+. .||.||....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-------------BCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-------------CCCCCCccCC
Confidence 567999999999981 22237889999999999999965532 6999998754
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=3e-11 Score=99.51 Aligned_cols=52 Identities=21% Similarity=0.515 Sum_probs=43.9
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...+++.++|+||++.+.+ |+.++|||+||..||.+|+... ...||.||...
T Consensus 25 ~~~l~~~~~C~IC~~~~~~----pv~~~CgH~FC~~Ci~~~~~~~------------~~~CP~Cr~~~ 76 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRR----PFQAQCGHRYCSFCLASILSSG------------PQNCAACVHEG 76 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHGGGS------------CEECHHHHHTT
T ss_pred hccCCcCcCCCCCChhhcC----cEECCCCCccCHHHHHHHHhcC------------CCCCCCCCCcc
Confidence 3577899999999999999 9999999999999999984321 12699999864
No 38
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.10 E-value=7.4e-11 Score=106.25 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=62.7
Q ss_pred ccccccccCCCCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccc--cccccccc
Q 023737 40 DDDASLNNSREEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPW--CNMVSLRL 116 (278)
Q Consensus 40 ~~~~s~~~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~--CR~~~~~~ 116 (278)
+++.-........+.||||++.|.+ |++. .|||+||+.||..| |... +...||. |++.+.
T Consensus 169 dDDDI~v~~~~~el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~-~~~~----------~~~~CPvtGCr~~l~-- 231 (267)
T 3htk_C 169 DEDDLQIEGGKIELTCPITCKPYEA----PLISRKCNHVFDRDGIQNY-LQGY----------TTRDCPQAACSQVVS-- 231 (267)
T ss_dssp CSSCCCCCSSBCCSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHH-STTC----------SCEECSGGGCSCEEC--
T ss_pred CCccceecCCceeeECcCccCcccC----CeeeCCCCCcccHHHHHHH-HHhC----------CCCCCCcccccCcCc--
Confidence 3334445667899999999999999 9996 99999999999998 4322 1347999 999765
Q ss_pred cccCCCCCCcchHHHHHHHHHHhc
Q 023737 117 ICKGNLKFPQKNYYLLWMVESMNG 140 (278)
Q Consensus 117 ~~~~~~~~~~~N~~l~~lve~~~~ 140 (278)
...+..|..+..+++..+.
T Consensus 232 -----~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 232 -----MRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp -----GGGEEECHHHHHHHHHHHH
T ss_pred -----hhhCCcCHHHHHHHHHHHH
Confidence 6778899999988876553
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.10 E-value=4.6e-11 Score=81.74 Aligned_cols=50 Identities=32% Similarity=0.662 Sum_probs=42.3
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+..+|+||++.+.+.++.++.++|||.||..|+.+|+.... .||.||..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-------------RCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-------------CCTTSCCSS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-------------cCCCCCCcC
Confidence 56789999999977666788889999999999999966542 699999764
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=8.8e-11 Score=84.22 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=42.4
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...++...|+||++.|...+ .++.++|||.||..|+.+|+.... .||.||..+.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~-~~~~~~C~H~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 62 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGE-DVRRLPCMHLFHQVCVDQWLITNK-------------KCPICRVDIE 62 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSS-CEEECTTSCEEEHHHHHHHHHHCS-------------BCTTTCSBSC
T ss_pred CcCCCCCCCeeCCccccCCC-cEEEeCCCCHHHHHHHHHHHHcCC-------------CCcCcCcccc
Confidence 34456789999999986522 267789999999999999965532 5999998764
No 41
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=1.3e-11 Score=85.74 Aligned_cols=46 Identities=30% Similarity=0.579 Sum_probs=39.3
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.++.+.|+||++.|.+ |++++|||+||..|+.++ ...||.||..+.
T Consensus 3 e~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~----------------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS----------------GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS----------------SSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCC----eEEcCCCCcccHHHHccC----------------CCCCCcCCcEee
Confidence 3578999999999999 999999999999999762 226999998764
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=4.4e-11 Score=94.54 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=43.5
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+++.+.|+||++.+.+ |+.++|||+||..|+.+|+.... ..||.||..+.
T Consensus 18 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~------------~~CP~Cr~~~~ 69 (116)
T 1rmd_A 18 AHFVKSISCQICEHILAD----PVETSCKHLFCRICILRCLKVMG------------SYCPSCRYPCF 69 (116)
T ss_dssp HHHHHHTBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTC------------SBCTTTCCBCC
T ss_pred HhccCCCCCCCCCcHhcC----cEEcCCCCcccHHHHHHHHhHCc------------CcCCCCCCCCC
Confidence 345678999999999999 99999999999999999965422 16999998754
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=85.05 Aligned_cols=52 Identities=33% Similarity=0.557 Sum_probs=41.3
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..++...|+||++.|.+.+ ..+.++|||.||..|+.+|+..+. .||.||...
T Consensus 19 ~~~~~~~C~IC~~~~~~~~-~~~~l~C~H~fh~~Ci~~w~~~~~-------------~CP~Cr~~~ 70 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQ-LLRVLPCNHEFHAKCVDKWLKANR-------------TCPICRADS 70 (75)
T ss_dssp CSSSCCEETTTTEECCBTC-EEEEETTTEEEETTHHHHHHHHCS-------------SCTTTCCCC
T ss_pred ccCCCCCCeECCcccCCCC-eEEEECCCCHhHHHHHHHHHHcCC-------------cCcCcCCcC
Confidence 3456789999999998822 127789999999999999965532 599999865
No 44
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=98.13 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=55.1
Q ss_pred ccCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKFP 125 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~~ 125 (278)
...+++.+.|+||++.+.+ |++++|||+||..|+.+|+..... .||.||..+. ...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~------------~CP~Cr~~~~-------~~~~ 68 (170)
T 3hcs_A 12 DPPLESKYECPICLMALRE----AVQTPCGHRFCKACIIKSIRDAGH------------KCPVDNEILL-------ENQL 68 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHHCS------------BCTTTCCBCC-------GGGC
T ss_pred ccCCCCCCCCCCCChhhcC----cEECCCCCHHHHHHHHHHHHhCCC------------CCCCCccCcc-------hhhh
Confidence 3567889999999999999 999999999999999999654331 6999998764 2334
Q ss_pred cchHHHHHHHHHHh
Q 023737 126 QKNYYLLWMVESMN 139 (278)
Q Consensus 126 ~~N~~l~~lve~~~ 139 (278)
..+..+.+.+++++
T Consensus 69 ~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 69 FPDNFAKREILSLM 82 (170)
T ss_dssp EECHHHHHHHHTSE
T ss_pred hhhHHHHHHHhhcc
Confidence 45666666666544
No 45
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=84.70 Aligned_cols=54 Identities=24% Similarity=0.538 Sum_probs=41.9
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...++...|+||++.+.+.+. .+.++|||.||..|+.+|+.... .||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~~~~~~~-------------~CP~Cr~~~~ 63 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDE-LGICPCKHAFHRKCLIKWLEVRK-------------VCPLCNMPVL 63 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSC-EEEETTTEEEEHHHHHHHHHHCS-------------BCTTTCCBCS
T ss_pred ccCCCCCCCcCCCcccCCCCc-EEEcCCCCEecHHHHHHHHHcCC-------------cCCCcCcccc
Confidence 445677899999999987332 34559999999999999965432 6999998753
No 46
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=1.2e-10 Score=86.63 Aligned_cols=54 Identities=26% Similarity=0.631 Sum_probs=40.1
Q ss_pred cCCCCccccccccccccccCCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..++++++||||++.+...+ +..+ +|||+||..|+.++ |... ...||.||+...
T Consensus 6 ~~~~~~~~CpICle~~~~~d--~~~~p~~CGH~fC~~Cl~~~-~~~~-----------~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDD--INFFPCTCGYQICRFCWHRI-RTDE-----------NGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTT--TTCCSSTTSCCCCHHHHHHH-TTSS-----------CSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCcccc--ccccccCCCCCcCHHHHHHH-HhcC-----------CCCCCCCCCccC
Confidence 45678899999999885422 3444 49999999999987 4321 227999998753
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.99 E-value=1.5e-10 Score=82.62 Aligned_cols=48 Identities=31% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCccccccccccccccCCCc-EEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLP-YVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P-~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
++...|+||++.+.+ | +.++|||.||..|+.+|+.... .||.||....
T Consensus 3 ~~~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSN----YSMALPCLHAFCYVCITRWIRQNP-------------TCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHHHSC-------------STTTTCCCCC
T ss_pred CCCCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHhCcC-------------cCcCCChhhH
Confidence 356789999999988 7 5669999999999999865432 6999998753
No 48
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.98 E-value=1.2e-10 Score=79.76 Aligned_cols=51 Identities=29% Similarity=0.657 Sum_probs=40.3
Q ss_pred CCCccccccccccccccCCCcEEec-CCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLW-CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~-CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++++.+|+||++.+.+.+. ++.++ |||.||..|+.+|+..+. .||.||...
T Consensus 2 ~~~~~~C~IC~~~~~~~~~-~~~~~~C~H~f~~~Ci~~w~~~~~-------------~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEE-ARFLPRCGHGFHAECVDMWLGSHS-------------TCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSC-CEECSSSCCEECTTHHHHTTTTCC-------------SCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCc-eEECCCCCCcccHHHHHHHHHcCC-------------cCcCCCCEe
Confidence 4577899999999987553 66775 999999999999853321 699999764
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=86.49 Aligned_cols=52 Identities=27% Similarity=0.503 Sum_probs=41.6
Q ss_pred CCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..+++..|+||++.|...+ .++.++|||.||..|+.+|+..+. .||.||..+
T Consensus 36 ~~~~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~-------------~CP~Cr~~~ 87 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQKSG-------------TCPVCRCMF 87 (91)
T ss_dssp SSSSCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHTTTC-------------BCTTTCCBS
T ss_pred ccCCCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHHcCC-------------cCcCcCccC
Confidence 3457789999999988744 367789999999999999964322 699999864
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=2.4e-10 Score=91.18 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=41.2
Q ss_pred CCcccccccccccccc---CCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVV---ENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~---~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.+.++|+||++.|.+. ++.++.++|||+||..|+.+|+.... .||.||+.+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-------------BCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-------------CCCCCCCcCc
Confidence 4678999999999991 11228999999999999999954322 6999998764
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-10 Score=82.79 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=40.2
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
...++...|+||++.+.+ +.++|||.||..|+.+|+.. ...||.||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~-------------~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDR-------------HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCC-------------CSSCHHHHHCTT
T ss_pred hcCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHC-------------cCcCCCcCCccc
Confidence 455678899999999876 77899999999999997432 126999998753
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=1.4e-10 Score=85.07 Aligned_cols=49 Identities=29% Similarity=0.548 Sum_probs=41.8
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....+++.+.|+||++.+.+ |+.++|||. ||..|+..| . .||.||..+.
T Consensus 17 ~~~~~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~----~-------------~CP~Cr~~i~ 66 (74)
T 4ic3_A 17 QLRRLQEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----D-------------KCPMCYTVIT 66 (74)
T ss_dssp HHHHHHHHTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC----S-------------BCTTTCCBCS
T ss_pred HHhcCccCCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC----c-------------cCCCcCcCcc
Confidence 34466788999999999999 999999999 999999875 1 5999998753
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.89 E-value=6.5e-10 Score=87.30 Aligned_cols=55 Identities=22% Similarity=0.431 Sum_probs=39.0
Q ss_pred CccccccccccccccC--------------CCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVE--------------NLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~--------------~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++..|+||++.|.+.. .+.+.++|||.||..||.+|+....+. ....||.||...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~--------~~~~CP~CR~~~ 92 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD--------GSLQCPSCKTIY 92 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS--------SCCBCTTTCCBS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC--------CCCcCCCCCCcc
Confidence 3458999999997621 122367999999999999997542210 123799999875
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.6e-10 Score=83.59 Aligned_cols=49 Identities=29% Similarity=0.548 Sum_probs=40.9
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....+++..+|+||++.+.+ |+.++|||. ||..|+.+. . .||.||..+.
T Consensus 18 ~~~~~~~~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~----~-------------~CP~Cr~~i~ 67 (75)
T 2ecg_A 18 QLRRLQEEKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV----D-------------KCPMCYTVIT 67 (75)
T ss_dssp HHHHHHHHHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC----S-------------BCTTTCCBCC
T ss_pred HHHcCCCCCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC----C-------------CCccCCceec
Confidence 34556778899999999999 999999999 999999642 1 6999998753
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3.7e-09 Score=78.66 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=36.7
Q ss_pred Cccccccccccccc----------cCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNV----------VENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~----------~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++..|+||++.|.+ .+..++.+ +|||.||..||.+|+..+. .||.||...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-------------~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-------------RCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-------------BCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-------------CCCCcCCCc
Confidence 45568888887755 23345566 6999999999999954432 699999875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.76 E-value=2.6e-09 Score=85.09 Aligned_cols=56 Identities=25% Similarity=0.552 Sum_probs=44.0
Q ss_pred ccCCCCccccccccccccc---cCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 46 NNSREEGLECPICWESFNV---VENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~---~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....++...|+||++.+.+ ..+.++.++|||.||..|+.+|+.... .||.||....
T Consensus 66 l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-------------~CP~Cr~~~~ 124 (133)
T 4ap4_A 66 IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-------------TCPTCRKKIN 124 (133)
T ss_dssp CBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-------------BCTTTCCBCC
T ss_pred cccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-------------CCCCCCCcCC
Confidence 3445678899999999998 122338889999999999999965533 6999998753
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.67 E-value=1.1e-08 Score=97.02 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=41.1
Q ss_pred CCCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.++..+|+||++.+.+ |+.++|||.||..|+..|+.... ..||.||..+.
T Consensus 329 ~~~~~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~------------~~CP~CR~~i~ 378 (389)
T 2y1n_A 329 GSTFQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEG------------QGCPFCRCEIK 378 (389)
T ss_dssp TTSSSBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTC------------SBCTTTCCBCC
T ss_pred cCCCCCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCC------------CCCCCCCCccC
Confidence 3445799999999999 99999999999999999865211 16999998753
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.62 E-value=1.2e-08 Score=72.64 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCccccccccccccccCCCcEEe--cCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVL--WCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L--~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+++.+|+||++...+ ++.+ +|||. ||..|+.+|...+. .||.||..+.
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~-------------~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNK-------------PCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTC-------------CCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCC-------------cCCCcCcchh
Confidence 356789999999999 8887 99999 89999999843221 5999998753
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=8.7e-09 Score=78.48 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=39.7
Q ss_pred CccccccccccccccCCCcEEe---cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccc--cccc
Q 023737 51 EGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPW--CNMV 112 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~--CR~~ 112 (278)
+.++|+||++.+.. |.++ +|||.||..|+.++.......+. ...+.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~----~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-----~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPV----EQMTTIAQCQCIFCTLCLKQYVELLIKEGL-----ETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBG----GGEEEETTTTEEEEHHHHHHHHHHHHHHCS-----CCCEECSCTTCSSC
T ss_pred CCcCCcccCccccc----ccceEcCCCCCcccHHHHHHHHHHHhhcCC-----cccccCccccCCCC
Confidence 57899999999988 6554 79999999999998554322111 02468999 9976
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.56 E-value=3.3e-08 Score=77.61 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=38.1
Q ss_pred Ccccccccccccccc-------------CC-CcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVV-------------EN-LPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~-------------~~-~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+...|+||++.|.+. +. ..+.++|||.||..||.+|+..+. .||.||...
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-------------~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-------------VCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-------------BCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-------------cCcCCCCcc
Confidence 566899999999862 11 124459999999999999965432 699999874
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.55 E-value=2.9e-08 Score=70.43 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=38.7
Q ss_pred CccccccccccccccCCCcEEe--cCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL--WCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L--~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....|+||++...+ +.++ +|||. ||..|+.++..... .||.||+.+.
T Consensus 6 ~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~-------------~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD----GNIIHGRTGHLVTCFHCARRLKKAGA-------------SCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC----EEEEETTEEEEEECHHHHHHHHHTTC-------------BCTTTCCBCC
T ss_pred cCCCCcccCCcCCC----eEEEecCCCCHhHHHHHHHHHHHhCC-------------cCCCcCchhh
Confidence 45689999999988 8888 99998 99999998843321 6999998753
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.53 E-value=7.3e-09 Score=76.94 Aligned_cols=47 Identities=30% Similarity=0.610 Sum_probs=40.1
Q ss_pred cCCCCccccccccccccccCCCcEEecCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..+++...|+||++.+.+ ++.++|||. ||..|+..+ . .||.||..+.
T Consensus 13 ~~l~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~-------------~CP~Cr~~i~ 60 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEIN----STFCPCGHTVCCESCAAQL----Q-------------SCPVCRSRVE 60 (79)
T ss_dssp HHHHHHTBCTTTSSSBCC----EEEETTCBCCBCHHHHTTC----S-------------BCTTTCCBCC
T ss_pred HcCCCCCEeEEeCcccCc----EEEECCCCHHHHHHHHHhc----C-------------cCCCCCchhh
Confidence 445677899999999999 999999999 999999764 1 5999999764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.5e-08 Score=71.16 Aligned_cols=45 Identities=31% Similarity=0.649 Sum_probs=38.0
Q ss_pred CCCccccccccccccccCCCcEEecCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.++...|.||++...+ ++.+||||. ||..|+... . .||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~----~-------------~CP~CR~~i~ 57 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN----WVLLPCRHTCLCDGCVKYF----Q-------------QCPMCRQFVQ 57 (68)
T ss_dssp CCCSSCCSSSSSSCCC----CEETTTTBCCSCTTHHHHC----S-------------SCTTTCCCCC
T ss_pred CCCCCCCCCcCcCCCC----EEEECCCChhhhHHHHhcC----C-------------CCCCCCcchh
Confidence 3467899999999999 999999999 999999742 1 5999998764
No 64
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.44 E-value=2.8e-08 Score=93.05 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=42.0
Q ss_pred cccCCCCccccccccccccccCCCcEEecCCCc-chHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 45 LNNSREEGLECPICWESFNVVENLPYVLWCGHT-LCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 45 ~~~~l~e~l~CpIC~e~f~~~~~~P~~L~CGHt-FC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....++++..|+||++.+.+ |+.++|||. ||..|+..+ . .||.||..+.
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~----~-------------~CP~CR~~i~ 337 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSL----R-------------KCPICRGIIK 337 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCC----EEEETTCCEEECTTTGGGC----S-------------BCTTTCCBCC
T ss_pred HHHhCcCCCCCCccCCcCCc----eEEcCCCChhHhHHHHhcC----C-------------cCCCCCCCcc
Confidence 34566788999999999999 999999999 999999865 1 5999998764
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.4e-07 Score=69.02 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=40.7
Q ss_pred CCccccccccccccccCCCcEEecCC-----CcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCG-----HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CG-----HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.++..|.||++.+++.+ +.++||+ |.|+..||.+|+..+. ...||+||...
T Consensus 13 ~~~~~C~IC~~~~~~~~--~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-----------~~~CplCr~~~ 68 (80)
T 2d8s_A 13 SSQDICRICHCEGDDES--PLITPCHCTGSLHFVHQACLQQWIKSSD-----------TRCCELCKYEF 68 (80)
T ss_dssp TTSCCCSSSCCCCCSSS--CEECSSSCCSSSCCEETTHHHHHHHHHC-----------CSBCSSSCCBC
T ss_pred CCCCCCeEcCccccCCC--eeEeccccCCcCCeeCHHHHHHHHhhCC-----------CCCCCCCCCee
Confidence 35678999999987544 6778996 9999999999977643 12699999875
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=1.3e-07 Score=66.79 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=40.1
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 52 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
.+.||||.+.+.+ |+++ +|||+|++.||.+|+.++. .||.+++...
T Consensus 3 ~~~CpIs~~~m~d----PV~~~~sG~~yer~~I~~~l~~~~-------------~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRR----PVLSPKSRTIFEKSLLEQYVKDTG-------------NDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSS----EEEETTTTEEEEHHHHHHHHHHHS-------------BCTTTCCBCC
T ss_pred eEEecCCCCCCCC----CEEeCCCCcEEcHHHHHHHHHhCC-------------CCcCCcCCCC
Confidence 4789999999999 9999 9999999999999987643 5999998753
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.32 E-value=7.7e-08 Score=76.84 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=0.9
Q ss_pred Cccccccccccccc-------------cCCCcEE-ecCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNV-------------VENLPYV-LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~-------------~~~~P~~-L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
+...|+||++.|.+ .+..+++ ++|+|.||..||.+|+..+. .||.||...
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-------------~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-------------VCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-------------cCCCCCCee
Confidence 45689999999976 2222344 49999999999999976533 699999874
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=6e-06 Score=60.61 Aligned_cols=51 Identities=22% Similarity=0.359 Sum_probs=38.2
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
+...+|.||++.+...++.+ .|+|.|...|+.+|+....+ -.||.||....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~-----------~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAE-----------PRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSS-----------CCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCC-----------CCCCCCcCcCC
Confidence 35568999999998743333 89999999999999643211 16999998753
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.65 E-value=1.9e-05 Score=73.70 Aligned_cols=65 Identities=20% Similarity=0.318 Sum_probs=45.1
Q ss_pred CCCCccccccccccccccCCCcEE----ecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYV----LWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~----L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..++..+|+||++.+.+...+|.. ..|||.|+..|+.+|+....... +.. ....-.||.||....
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sR-qSF-nvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK-TFL-EVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSS-CTT-TCCEEECTTTCCEEE
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcc-ccc-cccCCCCCCCCCcCC
Confidence 445778999999999885556643 47999999999999987643210 000 001237999998754
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.64 E-value=3e-05 Score=59.78 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=37.2
Q ss_pred ccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccc
Q 023737 54 ECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRL 116 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~ 116 (278)
.|++|.-.+.. ..++.||.|.||.+|+..|..+..+ .||.|+..+.|+
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k------------~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDK------------MCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCC------------BCTTTCCBCSEE
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCC------------CCcCcCCeeeee
Confidence 58888887776 4577899999999999987433322 699999987644
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.32 E-value=0.00016 Score=50.65 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCccccccccccccccCCCcEEecCC--C---cchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCG--H---TLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CG--H---tFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
++...|.||++...+ +.++||. | .|...|+.+|+..+. ...||+|+...
T Consensus 4 ~~~~~CrIC~~~~~~----~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-----------~~~C~~C~~~~ 57 (60)
T 1vyx_A 4 EDVPVCWICNEELGN----ERFRACGCTGELENVHRSCLSTWLTISR-----------NTACQICGVVY 57 (60)
T ss_dssp CSCCEETTTTEECSC----CCCCSCCCSSGGGSCCHHHHHHHHHHHT-----------CSBCTTTCCBC
T ss_pred CCCCEeEEeecCCCC----ceecCcCCCCchhhhHHHHHHHHHHhCC-----------CCccCCCCCee
Confidence 466789999997655 6667865 4 899999999976533 12699999764
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.23 E-value=0.0014 Score=49.68 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=27.4
Q ss_pred Ccccccccccc-ccccCCCcEE--ecCCCcchHHHHHHH
Q 023737 51 EGLECPICWES-FNVVENLPYV--LWCGHTLCKNCVLGL 86 (278)
Q Consensus 51 e~l~CpIC~e~-f~~~~~~P~~--L~CGHtFC~~CL~~~ 86 (278)
|++.|++|.+. +.+ |+. +.|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~----av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD----AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB----CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC----ceEECCcCChHHhHHHCHHH
Confidence 56899999975 667 887 799999999999874
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.79 E-value=0.015 Score=60.67 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=61.2
Q ss_pred ccCCCCccccccccccccccCCCcEEecCC-CcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 46 NNSREEGLECPICWESFNVVENLPYVLWCG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 46 ~~~l~e~l~CpIC~e~f~~~~~~P~~L~CG-HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
....-+++.|||-.+++.+ |++++-| +|+=+.+|.+|+..+. .||.=|.+.. ...
T Consensus 885 ~~~iP~~F~cPIs~~lM~D----PVilpsG~~TydR~~I~~wl~~~~-------------tdP~Tr~~L~-------~~~ 940 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKD----PVILPASKMNIDRSTIKAHLLSDS-------------TDPFNRMPLK-------LED 940 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHTTCC-------------BCTTTCCBCC-------GGG
T ss_pred ccCCcHHhCCcchhhHHhC----CeEcCCCCEEECHHHHHHHHhcCC-------------CCCCCCCCCC-------ccc
Confidence 3556689999999999999 9999998 6999999999975422 6999888754 456
Q ss_pred CcchHHHHHHHHHHhcccC
Q 023737 125 PQKNYYLLWMVESMNGDRS 143 (278)
Q Consensus 125 ~~~N~~l~~lve~~~~~~~ 143 (278)
+.+|..++..++.+..++.
T Consensus 941 liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 941 VTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CEECHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 7899999999998876654
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.63 E-value=0.023 Score=50.15 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=37.5
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
....|.+|.++... -... .|+|.|+..|+.+|... .. ...||.|+....
T Consensus 179 ~i~~C~iC~~iv~~----g~~C~~C~~~~H~~C~~~~~~~-~~----------~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQ----GQSCETCGIRMHLPCVAKYFQS-NA----------EPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSS----CEECSSSCCEECHHHHHHHTTT-CS----------SCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhC----CcccCccChHHHHHHHHHHHHh-CC----------CCCCCCCCCCCC
Confidence 46789999999998 5555 49999999999998432 21 226999998754
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.79 E-value=0.05 Score=41.32 Aligned_cols=48 Identities=29% Similarity=0.591 Sum_probs=36.2
Q ss_pred cCCCCccccccccccccccCCCcEEecC-CCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 47 NSREEGLECPICWESFNVVENLPYVLWC-GHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L~C-GHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
...-.-+.|..||...+. ...| .|-+|.+|+...+..+. .||.|....
T Consensus 23 ~s~~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~Sd-------------rCpIC~~pL 71 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSVSN-------------RCPICKMPL 71 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSSSS-------------EETTTTEEC
T ss_pred ccccCcccChhhccccCC------eeeecchhhHHHHHHHHHhhcc-------------CCcccCCcC
Confidence 344556789999998877 3366 59999999988754433 699999875
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.26 E-value=0.67 Score=43.39 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=47.8
Q ss_pred CCCCccccccccccccccCCCcEEe-cCCCcchH--HHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCCC
Q 023737 48 SREEGLECPICWESFNVVENLPYVL-WCGHTLCK--NCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLKF 124 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~--~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~~ 124 (278)
...-.+.||+-...+.. |..- .|.|.-|- .=+.....+ . ....||.|.+... ..+
T Consensus 245 s~~vSL~CPlS~~ri~~----PvRg~~C~HlQCFDl~sfL~~~~~-~----------~~W~CPIC~k~~~-------~~d 302 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKY----PSKSINCKHLQCFDALWFLHSQLQ-I----------PTWQCPVCQIDIA-------LEN 302 (371)
T ss_dssp EEEEESBCTTTSSBCSS----EEEETTCCSSCCEEHHHHHHHHHH-S----------CCCBCTTTCCBCC-------GGG
T ss_pred eeEEeecCCCccccccc----cCcCCcCCCcceECHHHHHHHhhc-C----------CceeCCCCCcccC-------HHH
Confidence 34457899999999999 9888 89998444 333333221 1 2568999998765 566
Q ss_pred CcchHHHHHHHHHH
Q 023737 125 PQKNYYLLWMVESM 138 (278)
Q Consensus 125 ~~~N~~l~~lve~~ 138 (278)
+..+..+.++++..
T Consensus 303 L~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 303 LAISEFVDDILQNC 316 (371)
T ss_dssp EEEBHHHHHHHTTS
T ss_pred eeEcHHHHHHHHhc
Confidence 77777777776544
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=80.52 E-value=2 Score=31.65 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=30.2
Q ss_pred CCccccccccccccccCCCcEEecC----CCcchHHHHHHHHHhhc
Q 023737 50 EEGLECPICWESFNVVENLPYVLWC----GHTLCKNCVLGLQRAVI 91 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~C----GHtFC~~CL~~~~~~~~ 91 (278)
...+.|.+|.+-+.+ --...| +|.||-.|-+...++..
T Consensus 13 ~a~l~CtlC~erLEd----tHFVQCPsv~~HkFCFpCsr~sIk~q~ 54 (93)
T 2cs3_A 13 SGPLCCTICHERLED----THFVQCPSVPSHKFCFPCSRESIKAQG 54 (93)
T ss_dssp CCSCCCSSSCSCCSS----TTSEECSSCSSCEECHHHHHHHHHHHH
T ss_pred CCeeEeecchhhhcc----CceeeCCCccCCeeeccccHHHHHhcC
Confidence 467899999999999 434455 79999999998866654
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.38 E-value=1.6 Score=40.70 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=48.3
Q ss_pred cCCCCccccccccccccccCCCcEEe-cCCCcch--HHHHHHHHHhhccCCCCCCCCCCcccccccccccccccccCCCC
Q 023737 47 NSREEGLECPICWESFNVVENLPYVL-WCGHTLC--KNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSLRLICKGNLK 123 (278)
Q Consensus 47 ~~l~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC--~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~~~~~~~~~~ 123 (278)
....-.+.||+-...+.. |..- .|.|.=| ..=......+ . ....||.|.+... ..
T Consensus 210 ~~~~vSL~CPlS~~ri~~----P~Rg~~C~HlqCFDl~sfL~~~~~-~----------~~W~CPiC~k~~~-------~~ 267 (360)
T 4fo9_A 210 TSLRVSLMCPLGKMRLTI----PCRAVTCTHLQCFDAALYLQMNEK-K----------PTWICPVCDKKAA-------YE 267 (360)
T ss_dssp CCEEEESBCTTTCSBCSS----EEEETTCCCCCCEEHHHHHHHHHH-S----------CCCBCTTTCSBCC-------GG
T ss_pred eeeEEeeeCCCccceecc----CCcCCCCCCCccCCHHHHHHHHhh-C----------CCeECCCCCcccC-------HH
Confidence 344557899999999999 9888 8999844 4444443221 1 2568999998865 56
Q ss_pred CCcchHHHHHHHHHH
Q 023737 124 FPQKNYYLLWMVESM 138 (278)
Q Consensus 124 ~~~~N~~l~~lve~~ 138 (278)
++..+..+.++++..
T Consensus 268 dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 268 SLILDGLFMEILNDC 282 (360)
T ss_dssp GEEEBHHHHHHHTTC
T ss_pred HeEEcHHHHHHHHhC
Confidence 677777777776543
No 79
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.96 E-value=7.4 Score=33.47 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=24.7
Q ss_pred ccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 52 GLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
...|.+|...|.-.. +-... .||+.||..|...
T Consensus 164 ~~~C~~C~~~F~~~~-RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMT-RKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTB-CCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccc-cccccCCCcCEeChhhcCC
Confidence 458999999887632 23444 8999999999753
No 80
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.16 E-value=8.2 Score=31.47 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=36.2
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
++-.|.+|...|.--.+...+. .|.|.+|.+|-.. .+ ......|-.|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~-----~~-------~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA-----HP-------EEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC-----CS-------SSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccc-----cC-------CCCcEeeHHHHHH
Confidence 5789999999876655556666 8999999999621 11 1135689999865
No 81
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.65 E-value=26 Score=25.95 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCccccccccccccccCCCcEEec-----CC-CcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLW-----CG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~-----CG-HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
+.++...| +|.+..+. . |+. |. .-|+..|+.- .. .| .....||.|+..
T Consensus 32 d~~e~~yC-iC~~~~~g----~-MI~CD~~dC~~~WfH~~CVgl--~~------~p---~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYG----E-MIGCDNPDCSIEWFHFACVGL--TT------KP---RGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCCS----C-CCCCSCSSCSCCCCCSTTTTC--SS------CC---CSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCCC----C-EeEecCCCCCCCCEecccCCc--Cc------CC---CCCEECcCccCc
Confidence 33567778 99997654 3 444 44 4588888851 11 11 236789999764
No 82
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.38 E-value=6.4 Score=29.02 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=25.3
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
+...|.+|...|.-..+ -... .||+.||..|...
T Consensus 19 ~~~~C~~C~~~F~~~~R-rhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKR-RHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCSSSC-CEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccchhh-CccccCCCCEECCcccCC
Confidence 45679999998876322 3344 8999999999754
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=49.37 E-value=4.1 Score=24.92 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=13.0
Q ss_pred CCccccccccccccc
Q 023737 50 EEGLECPICWESFNV 64 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~ 64 (278)
.|++.||+|...+..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 468999999998887
No 84
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=48.64 E-value=7.5 Score=28.17 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=26.0
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 50 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
++...|.+|...|.-..+ ...- .||+.||.+|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~R-rHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVR-RHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSC-CEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchh-cccccCCCcEEChHHhCC
Confidence 356689999999876322 3444 8999999999753
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=47.27 E-value=7.6 Score=28.01 Aligned_cols=34 Identities=26% Similarity=0.646 Sum_probs=25.2
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
+...|.+|...|.-.. +-..- .||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~-RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISR-RKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTB-CCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCcc-ccccCCCCCCEEChHHhCC
Confidence 4567999999887622 23344 8999999999753
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.67 E-value=18 Score=26.96 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=33.5
Q ss_pred CccccccccccccccCCC-cEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 51 EGLECPICWESFNVVENL-PYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~-P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
..-.|.||.+..-..++= +.+. .|+-..|+.|.+-- ++.. ...||.|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE-rkeG-----------~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE-RREG-----------TQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH-HHTS-----------CSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH-Hhcc-----------CccccccCCcc
Confidence 345899999975542111 4444 79999999999753 2211 12699998764
No 87
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.98 E-value=8.4 Score=30.69 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=35.0
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.+.-.|.+|...|.--.+..... .|.|.+|.+|-... .. ........|-.|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~~------~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---SN------NRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---CC------SSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc---CC------CCCccceechhhHHH
Confidence 35678999999984333335555 89999999996421 00 011225689999764
No 88
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=45.95 E-value=24 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCccccccccccccccCCCcEEecCCCcchHHH
Q 023737 50 EEGLECPICWESFNVVENLPYVLWCGHTLCKNC 82 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~C 82 (278)
.....|..|...... .+....||.+||..-
T Consensus 23 ~~~nRC~~CrKkvgL---~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 23 PKKNRCFMCRKKVGL---TGFDCRCGNLFCGLH 52 (74)
T ss_dssp SCTTBCSSSCCBCGG---GCEECTTSCEECSSS
T ss_pred CcCCcChhhCCcccc---cCeecCCCCEechhc
Confidence 345689999886543 267778999999763
No 89
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=45.20 E-value=9.9 Score=26.73 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=23.5
Q ss_pred cccccccccccccCCCcEEe-cCCCcchHHHHH
Q 023737 53 LECPICWESFNVVENLPYVL-WCGHTLCKNCVL 84 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~ 84 (278)
..|.+|...|.-.. +...- .||..||.+|..
T Consensus 12 ~~C~~C~~~F~~~~-RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLN-RKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTB-CCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCcc-ccccCCCCCEEEcccccC
Confidence 47999999887632 23444 899999999974
No 90
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.15 E-value=7.8 Score=28.49 Aligned_cols=35 Identities=23% Similarity=0.524 Sum_probs=25.4
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 50 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
++...|.+|...|....+ -.-- .||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~R-rHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKK-EYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSC-EEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccc-cccCCCCCCEEChhHcCC
Confidence 455689999998876322 3333 8999999999753
No 91
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.82 E-value=7.7 Score=28.18 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=22.5
Q ss_pred ccccccccccc-cCCCcEEec-CCCcchHHHHHHH
Q 023737 54 ECPICWESFNV-VENLPYVLW-CGHTLCKNCVLGL 86 (278)
Q Consensus 54 ~CpIC~e~f~~-~~~~P~~L~-CGHtFC~~CL~~~ 86 (278)
-||-|...+.. ....++.-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 48888775543 233345565 9999999997664
No 92
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=43.51 E-value=9.6 Score=29.01 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=12.2
Q ss_pred cchHHHHHHHHHhhc
Q 023737 77 TLCKNCVLGLQRAVI 91 (278)
Q Consensus 77 tFC~~CL~~~~~~~~ 91 (278)
-||++|+.+|.....
T Consensus 42 GFCRNCLskWy~~aA 56 (105)
T 2o35_A 42 GFCRNCLSNWYREAA 56 (105)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 399999999976644
No 93
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=43.10 E-value=8.8 Score=30.04 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=25.2
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
+...|.+|...|.-.. +.... .||+.||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~-RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTV-RRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSS-CCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCcccccc-ccccCCCCCeEEChHHhCC
Confidence 4558999999887522 23444 8999999999753
No 94
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=42.88 E-value=10 Score=28.87 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.6
Q ss_pred cchHHHHHHHHHhh
Q 023737 77 TLCKNCVLGLQRAV 90 (278)
Q Consensus 77 tFC~~CL~~~~~~~ 90 (278)
-||++|+.+|....
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999997654
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.27 E-value=9.8 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=24.5
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVL 84 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~ 84 (278)
+...|.+|...|.... +-.-- .||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~-RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLK-KRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSS-CCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccch-hhhhhcCCCcEEChhhcC
Confidence 4568999999887532 23344 899999999964
No 96
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=38.67 E-value=32 Score=23.88 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCccccccccccccccCCCcEEe---cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVS 113 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~ 113 (278)
.++...|++|....+. -.++ .|..-|...|+.-. . . +. ......||.|+...
T Consensus 15 ~~~~~~C~~C~~~~~~----~~mi~CD~C~~wfH~~Cv~~~----~--~--~~-~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDDG----SPMIGCDDCDDWYHWPCVGIM----A--A--PP-EEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCSS----CCEEECSSSSSEEEHHHHTCS----S--C--CC-SSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCCC----CCEEEcCCCCcccccccCCCC----c--c--CC-CCCCEEChhccCch
Confidence 3466789999987654 2344 67778889998531 0 0 00 12366899997653
No 97
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.52 E-value=17 Score=24.61 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCCccccccccccccccCCCcEEe---cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 49 REEGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 49 l~e~l~CpIC~e~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.++...|++|...+++. -.|+ .|..=|+..|+.-. ... ........||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~---~~mI~Cd~C~~WfH~~Cvgl~-~~~-------~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAAD---EFWICCDLCEMWFHGKCVKIT-PAR-------AEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSS---SCEEECSSSCCEEETTTTTCC-TTG-------GGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCC---CCEEEccCCCCCCCccccCcC-hhH-------hcCCCcEECCCCcCc
Confidence 35778899999988642 2344 56666777776421 110 011235689999754
No 98
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=37.42 E-value=23 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCccccccccccccccCCCcEEe---cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVL---WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L---~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
++...| ||....+. -.++ .|..-|...|+..- .. ..+....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~----~~mi~Cd~C~~w~H~~C~~~~------~~----~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDD----GYMICCDKCSVWQHIDCMGID------RQ----HIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCS----SCEEEBTTTCBEEETTTTTCC------TT----SCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCC----CcEEEcCCCCCcCcCcCCCCC------cc----CCCCCEECCCCcC
Confidence 455678 89887665 3444 56677888887421 01 1234678999974
No 99
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=36.16 E-value=10 Score=29.69 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=24.0
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
+...|..|...|.-..+ -... .||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~R-kHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 18 LEPSCKSCGAHFANTAR-KQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp --CCCTTTCCCCSSGGG-CEECTTTCCEECGGGEEC
T ss_pred ccCcccCcCCccccccc-cccCCCCCCeeCHHHhCC
Confidence 44689999998876222 3344 8999999999754
No 100
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=36.09 E-value=3.4 Score=29.85 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=22.9
Q ss_pred cccccc--ccccccc-cCCCcEEe------cCCCcchHHHHHHH
Q 023737 52 GLECPI--CWESFNV-VENLPYVL------WCGHTLCKNCVLGL 86 (278)
Q Consensus 52 ~l~CpI--C~e~f~~-~~~~P~~L------~CGHtFC~~CL~~~ 86 (278)
..-||- |...+.. .+...+.- .||+.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 556776 7665543 12223444 49999999998876
No 101
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=35.50 E-value=13 Score=25.85 Aligned_cols=47 Identities=17% Similarity=0.399 Sum_probs=29.9
Q ss_pred CccccccccccccccCCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
....|.+|.+- . -.++ .|...|+..|+...+.. .| .+...||.|+..
T Consensus 11 ~~~~C~vC~~~--~----~ll~Cd~C~~~~H~~Cl~P~l~~------~P---~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--T----DVLRCTHCAAAFHWRCHFPAGTS------RP---GTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--T----TCEECSSSCCEECHHHHCTTTCC------CC---SSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--C----eEEECCCCCCceecccCCCccCc------CC---CCCEECccccCC
Confidence 44579999853 1 2333 78899999999643211 11 135789999754
No 102
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=35.46 E-value=53 Score=28.88 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=12.7
Q ss_pred HhhhhhhhhhhcccchHH
Q 023737 254 FAIPSCLVLYFALPILDW 271 (278)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~ 271 (278)
-.+|.++++.+|+||+.=
T Consensus 80 TiiP~iILi~la~pS~~~ 97 (262)
T 2gsm_B 80 TIVPIVILVAIGAFSLPV 97 (262)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457777777778887653
No 103
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.75 E-value=12 Score=31.77 Aligned_cols=34 Identities=26% Similarity=0.611 Sum_probs=25.5
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHH
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLG 85 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~ 85 (278)
+...|.+|...|.-. ++.... .||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCc-ccccccCCcCCEEChHHhCC
Confidence 456999999988752 224445 8999999999753
No 104
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.70 E-value=2.5 Score=29.06 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=23.8
Q ss_pred ccccccccccccccCCCcEEe-c---CCCcchHHHHHHH
Q 023737 52 GLECPICWESFNVVENLPYVL-W---CGHTLCKNCVLGL 86 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L-~---CGHtFC~~CL~~~ 86 (278)
.-.||-|.......+---.|. . |++.||..|...|
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 346888887777643333333 3 8888999998776
No 105
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=30.50 E-value=19 Score=24.31 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=30.4
Q ss_pred CCccccccccccccccCCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
.+...|.+|.+. . -.++ .|...|+..|+..-+. ..| .+...||.|..
T Consensus 9 ~~~~~C~vC~~~--g----~ll~CD~C~~~fH~~Cl~p~l~------~~p---~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--G----EIILCDTCPRAYHMVCLDPDME------KAP---EGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--S----SEEECSSSSCEEEHHHHCTTCC------SCC---CSSCCCTTGGG
T ss_pred CCCCCCccCCCC--C----cEEECCCCChhhhhhccCCCCC------CCC---CCceECccccc
Confidence 456789999873 2 2344 7888999999964211 111 13678999975
No 106
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.97 E-value=3.6 Score=31.24 Aligned_cols=40 Identities=28% Similarity=0.588 Sum_probs=26.3
Q ss_pred cccccccccccccCCCcEEecCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccccc
Q 023737 53 LECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMVSL 114 (278)
Q Consensus 53 l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~~~ 114 (278)
..||.|...+..+ =++..|..|-... . ....||.|.++..
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~f----~----------~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEFI----E----------MKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCEE----E----------EEEECTTTCSBCE
T ss_pred ccCccCCCcceec--------CCEEECccccchh----h----------ccccCcchhhHHH
Confidence 8999999977651 1344488885432 1 1236999998764
No 107
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=27.66 E-value=43 Score=22.39 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=10.5
Q ss_pred ccccccccccccc
Q 023737 52 GLECPICWESFNV 64 (278)
Q Consensus 52 ~l~CpIC~e~f~~ 64 (278)
...|.+|.-+|+.
T Consensus 3 ~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 3 KYTCTVCGYIYDP 15 (54)
T ss_dssp CEEETTTCCEECT
T ss_pred ceECCCCCeEECC
Confidence 4579999988886
No 108
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.35 E-value=14 Score=34.17 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=0.0
Q ss_pred CCccccccccccccccCCCcEEe-cCCCcchHHHHHHH
Q 023737 50 EEGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGL 86 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~ 86 (278)
.+...|..|...|.-..+ .... .||+.||..|....
T Consensus 373 ~~~~~c~~c~~~f~~~~r-~h~Cr~Cg~~~C~~Cs~~~ 409 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLR-RHHCHACGKIVCRNCSRNK 409 (434)
T ss_dssp --------------------------------------
T ss_pred ccCCcCCCcCCCCCCcch-hhhcccCcCEeehhhCCCe
Confidence 345689999998876322 2333 89999999998753
No 109
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=26.22 E-value=82 Score=26.97 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=10.1
Q ss_pred HhhhhhhhhhhcccchH
Q 023737 254 FAIPSCLVLYFALPILD 270 (278)
Q Consensus 254 ~~~~~~~~~~~~~~~~~ 270 (278)
-.+|.++++.+|+||+.
T Consensus 66 TiiP~iil~~la~ps~~ 82 (227)
T 1v54_B 66 TILPAIILILIALPSLR 82 (227)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 34566666666666654
No 110
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.87 E-value=64 Score=22.45 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCccccccccccccccCCCcEEe--c--CC-CcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 50 EEGLECPICWESFNVVENLPYVL--W--CG-HTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 50 ~e~l~CpIC~e~f~~~~~~P~~L--~--CG-HtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
++...| +|.+.... .++. . |. .-|+..|+.- .. .| .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g----~MI~CD~~~C~~~wfH~~Cvgl--~~------~p---~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYG----EMIGCDNPDCSIEWFHFACVGL--TT------KP---RGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCS----SEECCSCSSCSCCCEETTTTTC--SS------CC---SSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCC----CEeEeeCCCCCCccEecccCCc--Cc------CC---CCCEECCCCCcc
Confidence 466788 89987654 4333 3 54 5788999851 11 11 136789999764
No 111
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.59 E-value=31 Score=25.46 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=30.4
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHHHHHHHHhhcc-CCC--CCCCCCCccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNCVLGLQRAVIR-LPT--LPFQLPFFITCPWCNM 111 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL~~~~~~~~~-~~~--~p~~~~~~i~CP~CR~ 111 (278)
.+-.|.||...=.+ +..| =--|+-.|...|+++.-.-... ... .--.......||.|..
T Consensus 14 ~D~~C~VC~~~t~~-~l~p-CRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 14 NDEMCDVCEVWTAE-SLFP-CRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CSCCCTTTCCCCSS-CCSS-CSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCcccCcccccccc-ceec-cccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 45578888743322 1111 0147889999999885111110 000 0001234679999953
No 112
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.57 E-value=50 Score=23.98 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=12.2
Q ss_pred Cccccccccccccc
Q 023737 51 EGLECPICWESFNV 64 (278)
Q Consensus 51 e~l~CpIC~e~f~~ 64 (278)
....|.+|.-+|+.
T Consensus 26 ~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 26 KLFRCIQCGFEYDE 39 (81)
T ss_dssp CEEEETTTCCEEET
T ss_pred ceEEeCCCCEEEcC
Confidence 47899999999986
No 113
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=25.44 E-value=2.4e+02 Score=22.00 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=29.5
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHHHH-----HhhccCCCCCCCCCCccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQ-----RAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~-----~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
.+..|.+|.+-=+- +.- .|-..||.+|+...+ .+..+.. ....|+.|+.
T Consensus 56 ~~~~C~vC~dGG~L-----lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~-------~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNL-----ICCDFCHNAFCKKCILRNLGRRELSTIMDEN-------NQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEE-----EECSSSSCEEEHHHHHHHTCHHHHHHHTCTT-------SCCCCTTTCC
T ss_pred CCCcCeecCCCCee-----EecCCCchhhhHHHhCCCcchhHHHHhccCC-------CCeEcCCcCC
Confidence 34568888863221 111 688999999998752 2211111 2568999964
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=25.00 E-value=53 Score=26.31 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=30.3
Q ss_pred CccccccccccccccCCCcEEe-cCCCcchHHHHHHHHHh----hc-cCCCCCCCCCCccccccccc
Q 023737 51 EGLECPICWESFNVVENLPYVL-WCGHTLCKNCVLGLQRA----VI-RLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L-~CGHtFC~~CL~~~~~~----~~-~~~~~p~~~~~~i~CP~CR~ 111 (278)
.+..|.+|.+-=+- ..- .|-..||..|+...+.. .. ... ....||.|+.
T Consensus 62 ~~d~C~vC~~GG~L-----lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~-------~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNL-----ICCDFCHNAFCKKCILRNLGRKELSTIMDEN-------NQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSE-----EECSSSCCEEEHHHHHHHTCHHHHHHHHTST-------TCCCCTTTCC
T ss_pred CCCeecccCCCCcE-----EeCCCCCCeeeHhhcCCCCChhhhhhcccCC-------CCCEeecccC
Confidence 45678888863222 112 78899999999865431 10 111 2568999974
No 115
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.80 E-value=14 Score=23.81 Aligned_cols=47 Identities=19% Similarity=0.426 Sum_probs=26.9
Q ss_pred ccccccccccccCCCcEEe--cCCCcchHHHHHHHHHhhccCCCCCCCCCCcccccccccc
Q 023737 54 ECPICWESFNVVENLPYVL--WCGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNMV 112 (278)
Q Consensus 54 ~CpIC~e~f~~~~~~P~~L--~CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~~ 112 (278)
.|.+|.+.-+. + ..++ .|...|+..|+..-+. ..| .+...||.|+..
T Consensus 2 ~C~vC~~~~~~-~--~ll~Cd~C~~~~H~~Cl~p~l~------~~P---~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGED-D--KLILCDECNKAFHLFCLRPALY------EVP---DGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCC-S--CCEECTTTCCEECHHHHCTTCC------SCC---SSCCSCTTTSCC
T ss_pred CCCCCCCCCCC-C--CEEECCCCChhhCcccCCCCcC------CCC---CCcEECcCcccc
Confidence 47777764332 0 2233 6778899999863211 111 135689999753
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.49 E-value=35 Score=23.63 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCCCccccccccccccccCCCcEEec---CCCcchHHHHHHHHHhhccCCCCCCCCCCccccccccc
Q 023737 48 SREEGLECPICWESFNVVENLPYVLW---CGHTLCKNCVLGLQRAVIRLPTLPFQLPFFITCPWCNM 111 (278)
Q Consensus 48 ~l~e~l~CpIC~e~f~~~~~~P~~L~---CGHtFC~~CL~~~~~~~~~~~~~p~~~~~~i~CP~CR~ 111 (278)
...+...| +|....+. -.|+. |..=|...|+.-. . ...+....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~~----~~MIqCd~C~~WfH~~Cvgi~----~------~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAG----RPMIECNECHTWIHLSCAKIR----K------SNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCTT----CCEEECTTTCCEEETTTTTCC----T------TSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCCC----CCEEECCCCCccccccccCcC----c------ccCCCcEECCCCCC
Confidence 33567788 99987765 44554 5555666666321 0 01234678999974
No 117
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=23.15 E-value=1.1e+02 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=14.8
Q ss_pred HHHhhhhhhhhhhcccchHHH
Q 023737 252 IVFAIPSCLVLYFALPILDWL 272 (278)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~ 272 (278)
+--.+|.++++.+++||+.=|
T Consensus 109 iWTiiP~iILi~La~pSl~~l 129 (298)
T 3hb3_B 109 IWTLVPVLILVAIGAFSLPIL 129 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344578888888888887644
No 118
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.46 E-value=49 Score=22.82 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=14.2
Q ss_pred ccccccccccccccCCCcEEecCCCcchHHHH
Q 023737 52 GLECPICWESFNVVENLPYVLWCGHTLCKNCV 83 (278)
Q Consensus 52 ~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~CL 83 (278)
...|.-|.+.+.. .++..-+..|+..|.
T Consensus 15 ~~~C~~C~~~I~~----~~~~a~~~~~H~~CF 42 (79)
T 1x62_A 15 LPMCDKCGTGIVG----VFVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCSSSCCCCCS----SCEECSSCEECTTTT
T ss_pred CCccccCCCCccC----cEEEECcceeCcCcC
Confidence 3456666665554 333444555555543
No 119
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.84 E-value=28 Score=26.64 Aligned_cols=8 Identities=38% Similarity=1.016 Sum_probs=6.6
Q ss_pred cccccccc
Q 023737 105 TCPWCNMV 112 (278)
Q Consensus 105 ~CP~CR~~ 112 (278)
.||.|+..
T Consensus 86 rCP~CkSe 93 (105)
T 2gmg_A 86 RCPKCKSE 93 (105)
T ss_dssp SCSSSCCC
T ss_pred CCcCCCCC
Confidence 69999865
No 120
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.48 E-value=94 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCcccccc--ccccccccCCCcEEec-CCCcchHH
Q 023737 50 EEGLECPI--CWESFNVVENLPYVLW-CGHTLCKN 81 (278)
Q Consensus 50 ~e~l~CpI--C~e~f~~~~~~P~~L~-CGHtFC~~ 81 (278)
.....|.. |.+.-.. |+.-. |+.+||..
T Consensus 23 ~~~~~C~~~~Ck~~~~l----~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELV----AVICPYCEKNFCLR 53 (86)
T ss_dssp SCCEECCSTTCCCEESS----CEECTTTCCEECGG
T ss_pred CCCCCCCCcCCCCCCcc----ceECCCCCcccccc
Confidence 34567988 9987444 88886 99999986
No 121
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.10 E-value=67 Score=22.30 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=21.2
Q ss_pred CccccccccccccccCCCcEEecCCCcchHHH
Q 023737 51 EGLECPICWESFNVVENLPYVLWCGHTLCKNC 82 (278)
Q Consensus 51 e~l~CpIC~e~f~~~~~~P~~L~CGHtFC~~C 82 (278)
....|..|.+...- .+..-.||.+||..-
T Consensus 14 ~~~rC~~C~kkvgl---~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGV---MGFKCKCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTT---SCEECTTSCEECSSS
T ss_pred cCCcChhhCCcccc---cCeEeecCCEecccC
Confidence 45689999886554 256669999999763
No 122
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.38 E-value=75 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=11.4
Q ss_pred Cccccccccccccc
Q 023737 51 EGLECPICWESFNV 64 (278)
Q Consensus 51 e~l~CpIC~e~f~~ 64 (278)
....|.+|.-+|+.
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 46789999988886
Done!