BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023738
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 81 CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS------ 134
S I YG V SWK + EE L+LS+ A KP+RGGIP+ FP F + +
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 191
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 192 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 251
G D + T+ + K + DI V L + D L KE +
Sbjct: 133 --GSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 252 TEQGDAITFESEVSVC 267
++ +TF E V
Sbjct: 190 VDKHPVVTFNQETDVI 205
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 81 CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS------ 134
S I YG V SWK + EE L+LS+ A KP+RGGIP+ FP F + +
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 191
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 192 GPGGDLMLTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGLETLDYLDNLKDKERF 251
G D + T+ + K + DI V L + D L KE +
Sbjct: 133 --GSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 252 TEQGDAITFESEVSVC 267
++ +TF E V
Sbjct: 190 VDKHPVVTFNQETDVI 205
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 29/205 (14%)
Query: 83 AEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQF--ANHGSLEKHGF 140
A L G ++SWK EE+L+LS+ F +RGG+PIC+P F A L HGF
Sbjct: 53 ASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGF 112
Query: 141 ARSRVWSIDPDPPPFSANSSSQACVDLI--LKHSEEEVKIWPHRYEFRLRITLGPGGDLM 198
AR+ W++ A++ V L L+ SE K WPH + R +G ++
Sbjct: 113 ARNLPWAL-------KAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGKTCEIE 165
Query: 199 LTSRIRNTNTDGKSXXXXXXXXXXXXVSDISEVRVEGL--ETLDYLDNLKDK------ER 250
L + T V DI+ V+V GL +D +++ K+ +
Sbjct: 166 LEAHGEFATTSA--------LHSYFNVGDIANVKVSGLGDRFIDKVNDAKEGVLTDGIQT 217
Query: 251 FTEQGDAITFESEVSVCSNLDDSRI 275
F ++ D + E CS + D+ +
Sbjct: 218 FPDRTDRVYLNPE--ACSVIHDATL 240
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 82 SAEIYLYGGQVISWKNEYG-EELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEK--H 138
+A+I L G Q+ISWK + +++L+LS F + IRGG+PIC+P F G +++ H
Sbjct: 32 TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWF---GGVKQPAH 88
Query: 139 GFARSRVWSI 148
G AR R+W +
Sbjct: 89 GTARIRLWQL 98
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 21/129 (16%)
Query: 89 GGQVISWKNEYGEELLFLSSKATFTHPK-PIRGGIPICFP--------QFANHGS---LE 136
GG V W + G+ +L+ + F P +RGGIPI FP QF + G L+
Sbjct: 32 GGLVTEWTVQ-GQPILYFD-RERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLK 89
Query: 137 KHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGD 196
+HGFAR W + + A +DL L H++ ++ +P +E L G
Sbjct: 90 QHGFARDLPWEV------IGQQTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQ-GHS 142
Query: 197 LMLTSRIRN 205
L + RI N
Sbjct: 143 LRIEQRIAN 151
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRL 187
L +HGFAR+ F + ++ + +LK +EE K++P ++EFR+
Sbjct: 70 LGQHGFARN---------ADFEVENHTKESITFLLKDNEETRKVYPFKFEFRV 113
>pdb|2FHQ|A Chain A, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
pdb|2FHQ|B Chain B, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
Length = 141
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 233 VEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSN 269
+ L+T+D+L N K F E+GD++ EV V ++
Sbjct: 56 ADSLKTIDFLSNPKAGLCFQEKGDSVALXGEVEVVTD 92
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 147 SIDPDPPPFSANSSSQACVDLILKHSEEEVKIWP 180
SI P+P F +N S C D I+ H+ E + P
Sbjct: 168 SISPEPSKFFSNCSYIQCWDFIMNHNPECIDNEP 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,207,607
Number of Sequences: 62578
Number of extensions: 277359
Number of successful extensions: 430
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 9
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)