BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023738
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q40784|AAPC_CENCI Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2
SV=1
Length = 329
Score = 328 bits (842), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/219 (71%), Positives = 176/219 (80%)
Query: 60 FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIR 119
F E K +GLEKVVLR R C AEIYLYGGQV SWKN+ GEELLFLSSKA F PK IR
Sbjct: 23 FAELVKTPSGLEKVVLRGARNCCAEIYLYGGQVTSWKNDNGEELLFLSSKAIFKPPKAIR 82
Query: 120 GGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIW 179
GGIPIC PQF HG+LE+HGFAR+R WSID DPPP N + +A VDLIL+ +EE++KIW
Sbjct: 83 GGIPICLPQFGTHGNLEQHGFARNRFWSIDNDPPPLPVNPAIKAFVDLILRPAEEDLKIW 142
Query: 180 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETL 239
PH +EFRLR+ LGP GDL LTSRIRNTNTDG+ F++TFAYHTYF VSDISEVRVEGLET+
Sbjct: 143 PHSFEFRLRVALGPSGDLSLTSRIRNTNTDGRPFSYTFAYHTYFFVSDISEVRVEGLETM 202
Query: 240 DYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIALV 278
DYLDNLK KERFTEQGDAI FESEV S+IA++
Sbjct: 203 DYLDNLKAKERFTEQGDAIVFESEVDKVYLAAPSKIAII 241
>sp|Q03161|YMY9_YEAST Glucose-6-phosphate 1-epimerase OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR099C PE=1 SV=1
Length = 297
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 81 CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS------ 134
S I YG V SWK + EE L+LS+ A KP+RGGIP+ FP F + +
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 135 LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILK---HSEEEVKIWPHRYEFRLRITL 191
L +HG AR+ W + V LK + E K+WP Y L + L
Sbjct: 79 LPQHGLARNSTWEF------LGQTKENPPTVQFGLKPEIANPELTKLWPMDYLLILTVEL 132
Query: 192 GPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKDKERF 251
G D + T+ + K F + +HTYF + DI V L + D L KE +
Sbjct: 133 --GSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL-KESY 189
Query: 252 TEQGDAITFESEVSVC 267
++ +TF E V
Sbjct: 190 VDKHPVVTFNQETDVI 205
>sp|P39173|YEAD_ECOLI Putative glucose-6-phosphate 1-epimerase OS=Escherichia coli
(strain K12) GN=yeaD PE=1 SV=2
Length = 294
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 17/176 (9%)
Query: 83 AEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQF--ANHGSLEKHGF 140
A L G ++SWK EE+L+LS+ F + IRGG+P+C+P F A L HGF
Sbjct: 38 ASFALQGAHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGF 97
Query: 141 ARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLT 200
AR+ W++ + + L SEE K WPH + +G ++ L
Sbjct: 98 ARNLPWTLKS-----HHEDADGVALTFELTQSEETKKFWPHDFTLLAHFRVGKTCEIDLE 152
Query: 201 SRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETLDYLDNLKD-KERFTEQG 255
S F T A HTYF V DI++V V GL ++D + D KE G
Sbjct: 153 SH--------GEFETTSALHTYFNVGDIAKVSVSGLGD-RFIDKVNDAKENVLTDG 199
>sp|P44160|Y1317_HAEIN Putative glucose-6-phosphate 1-epimerase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1317
PE=3 SV=1
Length = 271
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 41/146 (28%)
Query: 101 EELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEK--HGFARSRVWSIDPDPPPFSAN 158
+++L+LS F + IRGG+PIC+P F G +++ HG AR R+W +
Sbjct: 53 QDVLWLSEVEPFKNGNAIRGGVPICYPWF---GGVKQPAHGTARIRLWQL---------- 99
Query: 159 SSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTF- 217
S + + R EF L L ++ +++ TD FT
Sbjct: 100 -------------SHYYISVHKVRLEFELFSDLN-----IIEAKVSMVFTDKCHLTFTHY 141
Query: 218 -------AYHTYFAVSDISEVRVEGL 236
A HTYF + DI++V V+GL
Sbjct: 142 GEESAQAALHTYFNIGDINQVEVQGL 167
>sp|A2SQF6|DPHB_METLZ Diphthine synthase OS=Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z) GN=dphB PE=3 SV=1
Length = 252
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 210 GKSFAFTFAYHTYFAVSDISEVRV---EGLETLDYLDNLKDKERFTEQGDAITFESE 263
GKS + F Y +F ++ I + E L TL +LD KDKER+ + +A+ E
Sbjct: 130 GKSVSVPFPYGKWFPMTPIEVISANLKENLHTLVFLDIQKDKERYMKISEAVDLLEE 186
>sp|Q8WQ85|VILD_DICDI Villidin OS=Dictyostelium discoideum GN=vilA PE=1 SV=2
Length = 1704
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 70 LEKVVLRE--VRG-----CSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGI 122
+EK ++RE VR C E++ +V N EELL SSK+ F +P I GG
Sbjct: 6 IEKSIVRESKVRNVFSKVCKKELFYTNLKV----NSASEELL-KSSKSLFAYPSSIGGGS 60
Query: 123 PICFPQFANHGSLEKHGF 140
+ + +NHG + F
Sbjct: 61 CLSITKLSNHGKVPDTPF 78
>sp|Q16827|PTPRO_HUMAN Receptor-type tyrosine-protein phosphatase O OS=Homo sapiens
GN=PTPRO PE=1 SV=2
Length = 1216
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 7 KGFSLSLSPSGSGIKPGARFDSSISVRSSTTSTATSTASAAETNMNS--------PCR-- 56
K S +SPSG I+ +SV +++TA + ++++ N NS C+
Sbjct: 416 KSLSFYISPSGEWIEELTEKPQHVSVHVLSSTTALMSWTSSQENYNSTIVSVVSLTCQKQ 475
Query: 57 ---EKLFVEHCKGVNGLEKVVLREVRGCSAEIYLY 88
++L ++C VN + ++ V G ++ +Y
Sbjct: 476 KESQRLEKQYCTQVNSSKPIIENLVPGAQYQVVIY 510
>sp|E9Q612|PTPRO_MOUSE Receptor-type tyrosine-protein phosphatase O OS=Mus musculus
GN=Ptpro PE=1 SV=1
Length = 1226
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 7 KGFSLSLSPSGSGIKPGARFDSSISVRSSTTSTATSTASAAETNMNS--------PCR-- 56
K S +SP+G I+ +SV +++TA + ++++ N NS C+
Sbjct: 426 KSLSFYISPTGEWIEELTEKPQHVSVHVLSSTTALMSWTSSQENYNSTIVSVVSLTCQKQ 485
Query: 57 ---EKLFVEHCKGVNGLEKVVLREVRGCSAEIYLY 88
++L ++C VN + V+ V G ++ +Y
Sbjct: 486 KESQRLEKQYCTQVNSSKPVIENLVPGAQYQVVMY 520
>sp|B5RMG0|TIG_BORDL Trigger factor OS=Borrelia duttonii (strain Ly) GN=tig PE=3 SV=1
Length = 448
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 211 KSFAFTFAYHTY--FAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSV 266
K F FTF Y +Y F +SDIS +VE E + +++D+ + + ++I E SV
Sbjct: 107 KDFEFTFVYESYPEFEISDISNFKVEIPEVVISDSDIEDELKLLQFENSIIVEDNGSV 164
>sp|B5RPV6|TIG_BORRA Trigger factor OS=Borrelia recurrentis (strain A1) GN=tig PE=3 SV=1
Length = 448
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 211 KSFAFTFAYHTY--FAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSV 266
K F FTF Y +Y F +SDIS +VE E + +++D+ + + ++I E SV
Sbjct: 107 KDFEFTFVYESYPEFEISDISNFKVEIPEVVISDSDIEDELKLLQFENSIIVEDNGSV 164
>sp|Q9JIM0|MRE11_RAT Double-strand break repair protein MRE11A OS=Rattus norvegicus
GN=Mre11a PE=2 SV=1
Length = 706
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 20/141 (14%)
Query: 60 FVEHCKGVNGLEKVVLREV--RGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKP 117
FV H +EKV + V + S ++ LYG I + Y +F++ K T PK
Sbjct: 149 FVNHFGRSMSVEKVDISPVLLQKGSTKLALYGLGSIPDERLY---RMFVNKKVTMLRPKE 205
Query: 118 IRGGIPICFPQFANHGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVK 177
F F H + KHG S + P F + +DL++ E E K
Sbjct: 206 DENS---WFNLFVIHQNRSKHG-------STNFIPEQFLDD-----FIDLVIWGHEHECK 250
Query: 178 IWPHRYEFRLRITLGPGGDLM 198
I P R E +L PG ++
Sbjct: 251 IGPTRNEQQLFYVSQPGSSVV 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,605,208
Number of Sequences: 539616
Number of extensions: 4352233
Number of successful extensions: 12200
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12175
Number of HSP's gapped (non-prelim): 31
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)