Query 023738
Match_columns 278
No_of_seqs 165 out of 1523
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:17:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 1.6E-53 3.5E-58 378.3 21.1 213 60-277 13-225 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 1.1E-45 2.4E-50 337.5 21.1 195 73-277 2-199 (269)
3 COG0676 Uncharacterized enzyme 100.0 1.1E-41 2.3E-46 306.9 16.3 191 67-277 21-213 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 8.3E-36 1.8E-40 272.4 18.1 188 71-272 2-202 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 5.9E-29 1.3E-33 229.0 16.9 137 73-228 1-149 (288)
6 PF01263 Aldose_epim: Aldose 1 100.0 1E-27 2.2E-32 219.7 15.5 160 71-243 1-184 (300)
7 cd01081 Aldose_epim aldose 1-e 99.9 3.9E-26 8.5E-31 206.6 18.2 145 82-237 2-166 (284)
8 cd09021 Aldose_epim_Ec_YphB al 99.9 7.1E-26 1.5E-30 206.5 16.9 136 84-237 4-160 (273)
9 PRK15172 putative aldose-1-epi 99.9 4E-22 8.8E-27 184.9 18.2 147 69-234 9-177 (300)
10 cd09022 Aldose_epim_Ec_YihR Al 99.9 2.6E-22 5.7E-27 184.1 16.2 133 82-233 2-156 (284)
11 COG2017 GalM Galactose mutarot 99.9 1.5E-21 3.3E-26 181.9 15.7 147 67-229 9-175 (308)
12 cd09019 galactose_mutarotase_l 99.8 3.8E-20 8.3E-25 173.4 16.1 137 73-226 2-165 (326)
13 PLN00194 aldose 1-epimerase; P 99.8 4E-18 8.7E-23 160.7 17.8 147 68-227 7-179 (337)
14 TIGR02636 galM_Leloir galactos 99.8 7.3E-18 1.6E-22 158.8 16.5 143 69-227 3-171 (335)
15 PRK11055 galM galactose-1-epim 99.8 3.1E-17 6.7E-22 155.0 17.8 144 68-227 7-176 (342)
16 PTZ00485 aldolase 1-epimerase; 99.6 5.8E-15 1.3E-19 141.0 17.3 149 66-227 9-191 (376)
17 cd09023 Aldose_epim_Ec_c4013 A 99.3 1.4E-11 3E-16 113.5 12.1 135 84-226 4-155 (284)
18 KOG1604 Predicted mutarotase [ 99.3 7.2E-11 1.6E-15 109.6 13.3 142 64-227 14-190 (353)
19 cd09269 deoxyribose_mutarotase 98.3 1.5E-06 3.2E-11 80.9 7.8 86 134-226 61-147 (293)
20 PF14486 DUF4432: Domain of un 98.0 3.1E-05 6.7E-10 72.4 9.5 149 68-226 2-170 (302)
21 PF14315 DUF4380: Domain of un 97.1 0.03 6.6E-07 51.5 16.0 128 70-217 4-144 (274)
22 TIGR03593 yidC_nterm membrane 94.5 1.4 3E-05 41.9 14.7 119 70-214 73-203 (366)
23 PF14849 YidC_periplas: YidC p 90.9 4.1 8.9E-05 36.7 11.7 122 72-215 1-131 (270)
24 PRK01318 membrane protein inse 90.9 5.9 0.00013 40.0 13.7 121 72-215 40-170 (521)
25 PF09095 DUF1926: Domain of un 80.0 50 0.0011 30.4 13.4 138 67-222 4-185 (278)
26 COG0832 UreB Urea amidohydrola 63.6 8.7 0.00019 30.3 3.2 35 188-226 12-46 (106)
27 PF00699 Urease_beta: Urease b 58.5 14 0.00031 29.0 3.6 30 189-221 12-41 (100)
28 TIGR00192 urease_beta urease, 55.9 17 0.00036 28.7 3.6 30 189-221 13-42 (101)
29 PF02929 Bgal_small_N: Beta ga 55.6 1.6E+02 0.0034 27.0 10.6 152 74-245 1-158 (276)
30 PRK13203 ureB urease subunit b 55.4 16 0.00036 28.8 3.5 31 189-222 13-43 (102)
31 cd00407 Urease_beta Urease bet 55.4 16 0.00035 28.8 3.4 30 189-221 13-42 (101)
32 PF05506 DUF756: Domain of unk 50.0 37 0.0008 25.4 4.7 40 179-223 5-44 (89)
33 PRK13201 ureB urease subunit b 49.5 22 0.00048 29.4 3.5 31 189-222 13-43 (136)
34 PRK13202 ureB urease subunit b 48.4 26 0.00057 27.8 3.6 31 189-221 13-43 (104)
35 PRK13205 ureB urease subunit b 48.0 24 0.00051 29.9 3.5 31 189-222 13-43 (162)
36 PRK13204 ureB urease subunit b 46.8 25 0.00055 29.8 3.5 31 189-222 36-66 (159)
37 PRK13198 ureB urease subunit b 46.4 26 0.00056 29.7 3.5 32 188-222 40-71 (158)
38 PRK05089 cytochrome C oxidase 41.8 1.7E+02 0.0037 25.7 8.0 53 162-218 62-115 (188)
39 COG2835 Uncharacterized conser 38.9 13 0.00028 26.6 0.5 25 102-129 25-49 (60)
40 PRK13192 bifunctional urease s 34.1 46 0.00099 29.6 3.3 41 179-222 111-152 (208)
41 PRK13986 urease subunit alpha; 30.9 53 0.0011 29.5 3.2 30 189-221 118-147 (225)
42 PTZ00128 cytochrome c oxidase 27.8 2.3E+02 0.005 25.7 6.8 54 162-219 106-160 (232)
43 PF12690 BsuPI: Intracellular 27.6 80 0.0017 23.6 3.3 36 196-239 1-36 (82)
44 KOG2130 Phosphatidylserine-spe 27.1 30 0.00065 32.9 1.1 28 21-48 341-368 (407)
45 PRK11827 hypothetical protein; 24.9 28 0.00062 24.8 0.3 14 117-130 37-50 (60)
46 KOG4701 Chitinase [Cell wall/m 22.4 49 0.0011 32.4 1.5 47 10-56 457-503 (568)
47 PF04442 CtaG_Cox11: Cytochrom 22.3 1.6E+02 0.0035 24.9 4.5 52 162-217 35-87 (152)
48 PF00207 A2M: Alpha-2-macroglo 21.0 2.4E+02 0.0052 21.0 4.9 36 180-217 55-90 (92)
49 PF00942 CBM_3: Cellulose bind 20.1 2.7E+02 0.0057 20.6 4.9 33 195-229 13-46 (86)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-53 Score=378.31 Aligned_cols=213 Identities=66% Similarity=1.128 Sum_probs=200.0
Q ss_pred eEEEEecCCCeeEEEEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCCCCCCCc
Q 023738 60 FVEHCKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHG 139 (278)
Q Consensus 60 ~~~~~~~~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~~~~HG 139 (278)
.+...++.+|++.|.|+++++.+|+|++|||+|+||+...|+|.||++..+.|++.||||||||+|||+||..+.+++||
T Consensus 13 ~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHG 92 (305)
T KOG1594|consen 13 PVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHG 92 (305)
T ss_pred cceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCcccccc
Confidence 46778899999999999999999999999999999999889999999999999999999999999999999989999999
Q ss_pred eecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecc
Q 023738 140 FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAY 219 (278)
Q Consensus 140 faR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~ 219 (278)
|||++.|.++....+++ ..+.+.|.|.|.+++++++.|||.|++++++.|++ +.|+++.+|+|+ +++||.|++++
T Consensus 93 FaRn~~W~v~~~p~~lp--~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt--d~KpFsF~~al 167 (305)
T KOG1594|consen 93 FARNRFWEVENNPPPLP--SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT--DSKPFSFSFAL 167 (305)
T ss_pred cccceeeEeccCCCCCC--cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC--CCCceEEEeEe
Confidence 99999999998765443 22467899999999999999999999999999996 889999999999 99999999999
Q ss_pred cccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCCCceee
Q 023738 220 HTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIAL 277 (278)
Q Consensus 220 HpYF~v~d~~~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~~~~~i 277 (278)
||||+|+|+..++|+||+|++|+|++.+..++++++++|+|.+++||||+++|..+.|
T Consensus 168 HtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI 225 (305)
T KOG1594|consen 168 HTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAI 225 (305)
T ss_pred eeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEE
Confidence 9999999999999999999999999999998999999999999999999999988775
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1.1e-45 Score=337.53 Aligned_cols=195 Identities=47% Similarity=0.781 Sum_probs=173.9
Q ss_pred EEEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCC---CCCCCceecCcCeEEE
Q 023738 73 VVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG---SLEKHGFARSRVWSID 149 (278)
Q Consensus 73 i~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~---~~~~HGfaR~~~W~v~ 149 (278)
++|+++ +++|+|.++||+|+||++++++|+||+++.+.|+..++||||+||||||||+.. .+++|||||++.|+|.
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 678888 599999999999999999767999999999999999999999999999999976 6899999999999998
Q ss_pred ecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecccccccCCCcc
Q 023738 150 PDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDIS 229 (278)
Q Consensus 150 ~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF~v~d~~ 229 (278)
+... +++...++|.+.++++++++|||+|+++++|+|.+ ++|+++++|+|+ |+++|||++|+||||+++|++
T Consensus 81 ~~~~-----~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~--g~~~~p~~~g~HpYf~v~d~~ 152 (269)
T cd09020 81 EVSE-----DEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGF-DTLELELTVTNT--GDKPFSFTAALHTYFRVSDIE 152 (269)
T ss_pred eeec-----CCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcC-CcEEEEEEEECC--CCCCeEehhccCeeEecCCcc
Confidence 7642 23457888999888888999999999999999987 899999999998 999999999999999999999
Q ss_pred eeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCCCceee
Q 023738 230 EVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIAL 277 (278)
Q Consensus 230 ~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~~~~~i 277 (278)
+++|.||+|+.|+|++.+.... .+.+.+.|.+++||||.+.+..+.|
T Consensus 153 ~~~v~gl~~~~y~d~~~~~~~~-~~~~~~~~~~~~Drvy~~~~~~~~i 199 (269)
T cd09020 153 QVRVEGLEGATYLDKLTDQREK-VQGGAVTFDGEVDRVYLNTPAPLTI 199 (269)
T ss_pred ccEEeCCCCCceEEcCCCcccc-ccCCceEECCccceEEeCCCCCEEE
Confidence 9999999999999998654433 3446799999999999988866554
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=306.93 Aligned_cols=191 Identities=34% Similarity=0.523 Sum_probs=163.0
Q ss_pred CCCeeEEEEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCCC--CCCCceecCc
Q 023738 67 VNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGS--LEKHGFARSR 144 (278)
Q Consensus 67 ~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~--~~~HGfaR~~ 144 (278)
...++.+.+.|+. .+|.|+++||+|+||++++++|+||+++.+.|+.++||||||||||||||+..+ +|+|||||++
T Consensus 21 ~~~~~~~~~~h~~-~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~ 99 (287)
T COG0676 21 LDQLPLIVVDHPL-GSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNR 99 (287)
T ss_pred eeccCceEeeccc-ceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcC
Confidence 5677899999994 999999999999999998778999999999999999999999999999999865 7999999999
Q ss_pred CeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeeccccccc
Q 023738 145 VWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFA 224 (278)
Q Consensus 145 ~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF~ 224 (278)
.|++.+..+ +++...++|.|..+++ |+.|+++++++|++ .|+++++..|. .+ |+.||||||+
T Consensus 100 ~W~l~~~~~-----~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g~--~le~~l~~~~~--~s----~~~AlHtYF~ 161 (287)
T COG0676 100 PWKLLEHDE-----DEDGVRVTFGLDLEDE-----PHDFTLRLTFRFGE--TLELELESYGE--ES----FQAALHTYFR 161 (287)
T ss_pred ceeeeehhc-----ccCceEEEEEeCCCcc-----ccceEEEEEeeccc--eEEEEEEecCh--hH----HHHhhcceEE
Confidence 999998853 5567788999887654 99999999999974 57777776665 44 9999999999
Q ss_pred CCCcceeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCCCceee
Q 023738 225 VSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDDSRIAL 277 (278)
Q Consensus 225 v~d~~~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~~~~~i 277 (278)
|+|++++.|.||+|..|.+.+.... ...+.+.++|.+++||||++.+..+.|
T Consensus 162 VgDi~qv~V~GL~~~~~~~~~~~~~-~v~~~g~~~~~~~~DriY~~~~~~~~I 213 (287)
T COG0676 162 VGDIEQVEVSGLGGVCIDKVLNAEE-EVTQHGIVTFPGETDRIYLNPEPCSVI 213 (287)
T ss_pred ecchhheEeccCCceehhhhhhcee-eccCCCceeeCCCccEEEEcCCCceEE
Confidence 9999999999999977766654433 234455799999999999998766555
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=8.3e-36 Score=272.38 Aligned_cols=188 Identities=28% Similarity=0.481 Sum_probs=158.6
Q ss_pred eEEEEEcCC-ceEE-EEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCC-----------CCCC
Q 023738 71 EKVVLREVR-GCSA-EIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SLEK 137 (278)
Q Consensus 71 ~~i~L~~~~-~~~a-~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~-----------~~~~ 137 (278)
+.++|+++. +.++ .++.+||+|+||+. +|+|+||+++.+.++..+++|||+|+|||||||+. ++++
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~ 80 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTV-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQ 80 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEec-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEeccC
Confidence 678899885 3555 45689999999998 47899999999999889999999999999999974 4789
Q ss_pred CceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeee
Q 023738 138 HGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTF 217 (278)
Q Consensus 138 HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~ 217 (278)
|||+|++.|+|.+.. +...++|++...+..+++|||.|+++++|+|.+ ++|+++++|+|+ ++++|||++
T Consensus 81 HGf~r~~~W~v~~~~--------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~ 149 (271)
T cd09025 81 HGFARDLPWEVELLG--------DGAGLTLTLRDNEATRAVYPFDFELELTYRLAG-NTLEIAQRVHNL--GDQPMPFSF 149 (271)
T ss_pred cccccCCCEEEEecC--------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeC-CEEEEEEEEEEC--CCCcEEEEE
Confidence 999999999998752 245789999888778899999999999999987 899999999999 999999999
Q ss_pred cccccccCCCcceeEEecCCCCccccccccccceeecCCeEEecCCcceEEcCCC
Q 023738 218 AYHTYFAVSDISEVRVEGLETLDYLDNLKDKERFTEQGDAITFESEVSVCSNLDD 272 (278)
Q Consensus 218 g~HpYF~v~d~~~~~v~GL~g~~y~D~~~~~~~~~~~~~~~~~~~~~DrVY~~~~ 272 (278)
|+||||++++++++.|.++. ..|+|+..+..... ..+...+.+++|++|...+
T Consensus 150 g~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~D~~y~~~~ 202 (271)
T cd09025 150 GFHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANT-PGQFDETEEGVDLLFRPLG 202 (271)
T ss_pred ecCceeeCCchhccEEEcCH-HHHhhhccCCccCC-cccccccccccchhhccCC
Confidence 99999999999999999995 78888764432222 2334566789999998764
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.96 E-value=5.9e-29 Score=228.97 Aligned_cols=137 Identities=26% Similarity=0.432 Sum_probs=121.5
Q ss_pred EEEEcCCceEEEEECCCcEEEEEEeC-CCeEEEecCCccccCCCCCCcCCcceeccccCCCC-----------CCCCCce
Q 023738 73 VVLREVRGCSAEIYLYGGQVISWKNE-YGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SLEKHGF 140 (278)
Q Consensus 73 i~L~~~~~~~a~V~~~GA~l~s~~~~-~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~-----------~~~~HGf 140 (278)
++|+|+. .+|+|..+||+|+||+.+ +|.|+||..+.+.|. |++|+||||+||.. ++++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 4788886 999999999999999985 589999999877664 56899999999974 4789999
Q ss_pred ecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeeccc
Q 023738 141 ARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYH 220 (278)
Q Consensus 141 aR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~H 220 (278)
+|++.|+|.+.. +..++|++..+++.+.+|||.|+++++|+|.+ ++|+++++|+|+ ++++|||++|+|
T Consensus 74 ~r~~~w~v~~~~---------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~H 141 (288)
T cd09024 74 ARDMEFEVVEQS---------DDSVTFELTDNEETLKVYPFDFELRVTYTLEG-NTLKVTYEVKNP--DDKTMPFSIGGH 141 (288)
T ss_pred cccCceEEEEcc---------CCEEEEEEccCcchhhcCCeEEEEEEEEEEeC-CEEEEEEEEEcC--CCCceEEEEeCC
Confidence 999999998763 24689999888777899999999999999986 899999999998 999999999999
Q ss_pred ccccCCCc
Q 023738 221 TYFAVSDI 228 (278)
Q Consensus 221 pYF~v~d~ 228 (278)
|||++++.
T Consensus 142 pYF~~~~~ 149 (288)
T cd09024 142 PAFNCPLD 149 (288)
T ss_pred ceEECCCC
Confidence 99999864
No 6
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=99.95 E-value=1e-27 Score=219.66 Aligned_cols=160 Identities=28% Similarity=0.512 Sum_probs=121.9
Q ss_pred eEEEEEcCCceEEEEECCCcEEEEEEeCC-CeEEEecCCc--cccC--------CCCCCc---C-----CcceeccccCC
Q 023738 71 EKVVLREVRGCSAEIYLYGGQVISWKNEY-GEELLFLSSK--ATFT--------HPKPIR---G-----GIPICFPQFAN 131 (278)
Q Consensus 71 ~~i~L~~~~~~~a~V~~~GA~l~s~~~~~-g~evL~~~~~--~~~~--------~~~~ir---G-----GiPv~fP~fG~ 131 (278)
..|+|+|+.+.+|+|+.+||+|+||+.++ +.|+||..+. .+++ .+.+.| | |.+.|||+++.
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l~~~~~ 80 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCLPWNGP 80 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEBSSSBT
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEeeeccC
Confidence 47999998669999999999999999965 5899999987 2222 233444 4 66666666664
Q ss_pred CCCCCCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCc-EEEEEEEEEcCCCC
Q 023738 132 HGSLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGD-LMLTSRIRNTNTDG 210 (278)
Q Consensus 132 ~~~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~-L~l~~~V~N~N~gd 210 (278)
.++++|||+|++.|+|.+.. . +..++|++..+....++|||+|+++++|+|.+ +. |+++++|+|. +
T Consensus 81 -~~~~~HG~~~~~~w~v~~~~-------~-~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~-~~~L~i~~~v~n~--~- 147 (300)
T PF01263_consen 81 -YPNPIHGFARNKPWEVEEQS-------E-DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDE-NGKLTITYEVTND--G- 147 (300)
T ss_dssp -TTBEETBSGGGSB-EEEEEE-------E-TTEEEEEEEEEETTHHHSSSEEEEEEEEEEET-TEEEEEEEEEEES--S-
T ss_pred -CCcCCCCCcccccEEEEEec-------c-cceEEEEEEecCccceeeccceeeEEEEEECC-CCeEEEEEEEEec--C-
Confidence 46799999999999999873 1 23466666553334477999999999999998 77 9999999999 9
Q ss_pred ceeeeeecccccccCC----CcceeEEecCCCCcccc
Q 023738 211 KSFAFTFAYHTYFAVS----DISEVRVEGLETLDYLD 243 (278)
Q Consensus 211 ~p~pf~~g~HpYF~v~----d~~~~~v~GL~g~~y~D 243 (278)
++|||++|+||||+++ +...+.|.+.....+.+
T Consensus 148 ~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~ 184 (300)
T PF01263_consen 148 KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDE 184 (300)
T ss_dssp SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEET
T ss_pred ccEEeeccccceEEcCCcceeeeEEEeccceeeeccc
Confidence 9999999999999999 56667777754444433
No 7
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.94 E-value=3.9e-26 Score=206.64 Aligned_cols=145 Identities=24% Similarity=0.357 Sum_probs=122.6
Q ss_pred EEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCC------------------CCCCCceecC
Q 023738 82 SAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG------------------SLEKHGFARS 143 (278)
Q Consensus 82 ~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~------------------~~~~HGfaR~ 143 (278)
+++|..+||+|.+|+.+++.++||..+........+.++|.|+||||+||+. .+++|||+|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 5789999999999998645899999887654445678899999999999862 3689999999
Q ss_pred cCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecccccc
Q 023738 144 RVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (278)
Q Consensus 144 ~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF 223 (278)
+.|+++... .++..|+|++...+... +|||+|+++++|+|.+ ++|+++++|+|+ ++++|||++|+||||
T Consensus 82 ~~w~v~~~~-------~~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpyF 150 (284)
T cd01081 82 LPWRVVATD-------EEEASVTLSYDLNDGPG-GYPFPLELTVTYTLDA-DTLTITFTVTNL--GDEPMPFGLGWHPYF 150 (284)
T ss_pred CcEEEEEec-------cCCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeC-CeEEEEEEEEeC--CCCCcceeeecCceE
Confidence 999998763 12456888888766555 8999999999999987 899999999999 999999999999999
Q ss_pred cCCCc--ceeEEecCC
Q 023738 224 AVSDI--SEVRVEGLE 237 (278)
Q Consensus 224 ~v~d~--~~~~v~GL~ 237 (278)
++++. ++++|....
T Consensus 151 ~~~~~~~~~~~l~~~~ 166 (284)
T cd01081 151 GLPGVAIEDLRLRVPA 166 (284)
T ss_pred ecCCCcccceEEEecC
Confidence 99974 777776544
No 8
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.94 E-value=7.1e-26 Score=206.50 Aligned_cols=136 Identities=16% Similarity=0.223 Sum_probs=112.9
Q ss_pred EEECCCcEEEEEEeCC-CeEEEecCCccccCCCCCCcCCcceeccccCCCC--------------------CCCCCceec
Q 023738 84 EIYLYGGQVISWKNEY-GEELLFLSSKATFTHPKPIRGGIPICFPQFANHG--------------------SLEKHGFAR 142 (278)
Q Consensus 84 ~V~~~GA~l~s~~~~~-g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~--------------------~~~~HGfaR 142 (278)
.|+..||.|+||+..+ +.++||..+++.. ++.++|+|+||||.||+. .+++|||||
T Consensus 4 ~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar 80 (273)
T cd09021 4 LAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGW 80 (273)
T ss_pred eCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchh
Confidence 5788999999999854 4899998766542 245789999999999973 127999999
Q ss_pred CcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 143 SRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 143 ~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
++.|+|++.. +..|+|++...++. |||+|+++++|+|.+ ++|+++++++|+ ++++|||++|+|||
T Consensus 81 ~~~w~v~~~~---------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~-~~L~i~~~~~N~--~~~~~~~~~g~H~Y 145 (273)
T cd09021 81 RRPWQVVAAS---------ADSAELQLDHEADD---PPWAYRAEQRFHLAG-DGLSITLSVTNR--GDRPMPAGLGFHPY 145 (273)
T ss_pred cCceEEEecc---------CCeEEEEEecCCCC---CCEeEEEEEEEEEcC-CCEEEEEEEEEC--CCCCceeeeecCcc
Confidence 9999998763 23577777765432 499999999999986 899999999999 99999999999999
Q ss_pred ccCCCcceeEEecCC
Q 023738 223 FAVSDISEVRVEGLE 237 (278)
Q Consensus 223 F~v~d~~~~~v~GL~ 237 (278)
|++++...++|.+..
T Consensus 146 F~~~~~~~l~v~~~~ 160 (273)
T cd09021 146 FPRTPDTRLQADADG 160 (273)
T ss_pred EecCCCCEEEEecce
Confidence 999998888888763
No 9
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=99.89 E-value=4e-22 Score=184.93 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=117.1
Q ss_pred CeeEEEEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCC-----------C---
Q 023738 69 GLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------S--- 134 (278)
Q Consensus 69 gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~-----------~--- 134 (278)
.-.+++|+++. .+|+|..+||.|++|+.. |.++++-.+.+.+. +..+| ++|+||.||+. +
T Consensus 9 ~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~~-~~~vv~~~~~~~~~---~~~~g-~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 9 SGQTISLAAGD-YQATIVTVGAGLAELTFQ-GRHLVIPHKPEEMP---LAHLG-KVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred CcCEEEEeCCC-EEEEEecCCcEEEEEEEC-CEEEEecCCccccC---ccccc-cEecccCCeecCCEEEECCEEEECCC
Confidence 45779999986 999999999999999984 67877765544442 22344 79999999973 1
Q ss_pred ------CCCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCC
Q 023738 135 ------LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNT 208 (278)
Q Consensus 135 ------~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~ 208 (278)
.++||+++.+.|+|.+.. +..++|++...+ ..+|||.|+++++|+|.++++|+++++++|.
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~---------~~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~-- 149 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELT---------ATSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNI-- 149 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEec---------CCEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEEC--
Confidence 239999999999997653 225777776543 3689999999999999854799999999999
Q ss_pred CCceeeeeecccccccCC--CcceeEEe
Q 023738 209 DGKSFAFTFAYHTYFAVS--DISEVRVE 234 (278)
Q Consensus 209 gd~p~pf~~g~HpYF~v~--d~~~~~v~ 234 (278)
++++|||++|+||||+++ ++.+++|+
T Consensus 150 ~~~~~P~~~g~HpYFnl~~~~~~~~~L~ 177 (300)
T PRK15172 150 GDVPAPYGVGIHPYLTCNLTSVDEYLLQ 177 (300)
T ss_pred CCCceeeEEecCceEecCCCChhceEEE
Confidence 999999999999999997 35665554
No 10
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.89 E-value=2.6e-22 Score=184.09 Aligned_cols=133 Identities=19% Similarity=0.270 Sum_probs=107.8
Q ss_pred EEEEECCCcEEEEEEeCCCeEEEecCCccccCCCCCCcCCcceeccccCCCC-----------CCC---------CCcee
Q 023738 82 SAEIYLYGGQVISWKNEYGEELLFLSSKATFTHPKPIRGGIPICFPQFANHG-----------SLE---------KHGFA 141 (278)
Q Consensus 82 ~a~V~~~GA~l~s~~~~~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~-----------~~~---------~HGfa 141 (278)
+++|..+||.|++|+. +|+++||..+.... ..+. .| |+||||.||+. +++ +|||+
T Consensus 2 ~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~--~~~~-~g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~~ 76 (284)
T cd09022 2 RAVVTEVGAGLRSLTV-GGRDLVEPYPADEV--PPGA-AG-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGLV 76 (284)
T ss_pred EEEEEecCcEEEEEEE-CCEEEEecCCCccC--Cccc-cc-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCCe
Confidence 6889999999999998 67899996665432 1122 33 79999999973 233 99999
Q ss_pred cCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecccc
Q 023738 142 RSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHT 221 (278)
Q Consensus 142 R~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~Hp 221 (278)
|.+.|++.+.. ...|+|++... ..++|||.|+++++|+|.+ +.|+++++|+|+ ++++|||++|+||
T Consensus 77 ~~~~w~v~~~~---------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~Hp 142 (284)
T cd09022 77 RWADWQLVEHT---------DSSVTLRTRIP--PQPGYPFTLELTVTYELDD-DGLTVTLTATNV--GDEPAPFGVGFHP 142 (284)
T ss_pred ecceEEEeecc---------CCeEEEEEEeC--CccCCCceEEEEEEEEEcC-CcEEEEEEEEeC--CCCCeEeeeEecc
Confidence 99999998753 23578888764 3578999999999999987 789999999999 9999999999999
Q ss_pred cccCCCc--ceeEE
Q 023738 222 YFAVSDI--SEVRV 233 (278)
Q Consensus 222 YF~v~d~--~~~~v 233 (278)
||++++. .++.|
T Consensus 143 yF~l~~~~~~~~~L 156 (284)
T cd09022 143 YLSAGGAPLDECTL 156 (284)
T ss_pred eEecCCCCcccEEE
Confidence 9999863 56554
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.5e-21 Score=181.89 Aligned_cols=147 Identities=22% Similarity=0.300 Sum_probs=115.8
Q ss_pred CCCeeEEEEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCC-ccccCCCCCCcC-CcceeccccCCCC-----------
Q 023738 67 VNGLEKVVLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSS-KATFTHPKPIRG-GIPICFPQFANHG----------- 133 (278)
Q Consensus 67 ~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~-~~~~~~~~~irG-GiPv~fP~fG~~~----------- 133 (278)
......+++.++.++.++|..+||.|++|+. +++++++..+ .+.+. ..++ +.++|+||.||+.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~---~~~~~~ga~l~p~anRI~~g~f~~~G~~y 84 (308)
T COG2017 9 GQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYP---ATRGYGGAILGPYANRISNGRFTLDGKTY 84 (308)
T ss_pred CCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhc---cccccccceecCccCcccCCEEEECCEEE
Confidence 4567788899988888999999999999999 5777665544 22222 1223 6789999999973
Q ss_pred C-------CCCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEc
Q 023738 134 S-------LEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNT 206 (278)
Q Consensus 134 ~-------~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~ 206 (278)
+ .++||++|..+|+|.+... ++...++|.+.+.+ .+||++|+++++|+|.+ ++|+++++++|.
T Consensus 85 ~L~~N~~~~~lHG~~~~~~~~v~~~~~------~~~~~~~l~~~~~~---~gyP~~l~~~vtY~L~~-~~L~v~~~~~n~ 154 (308)
T COG2017 85 QLPPNEGGNALHGGARDFDWQVWEAEE------DDNAEFSLVLRDGE---DGYPGNLEATVTYTLNE-DGLTVTYEVTND 154 (308)
T ss_pred EeCCCCCCccccCCccCCCeeEEEEEe------ccCCEEEEEecccC---CCCCceEEEEEEEEEcC-CCEEEEEEEEeC
Confidence 2 3499999999999998752 22225666665543 45999999999999998 559999999999
Q ss_pred CCCCceeeeeecccccccCCCcc
Q 023738 207 NTDGKSFAFTFAYHTYFAVSDIS 229 (278)
Q Consensus 207 N~gd~p~pf~~g~HpYF~v~d~~ 229 (278)
++++|||++|+||||++++..
T Consensus 155 --~~~~~p~~~g~HpYFnl~~~~ 175 (308)
T COG2017 155 --GDEPTPFNLGNHPYFNLPGDG 175 (308)
T ss_pred --CCCcceecccccceEecCCCC
Confidence 999999999999999999653
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=99.84 E-value=3.8e-20 Score=173.39 Aligned_cols=137 Identities=19% Similarity=0.314 Sum_probs=109.0
Q ss_pred EEEEcCCceEEEEECCCcEEEEEEeCC--C--eEEEecCC-ccccCCCCCCcCCcceeccccCCCC-----------CCC
Q 023738 73 VVLREVRGCSAEIYLYGGQVISWKNEY--G--EELLFLSS-KATFTHPKPIRGGIPICFPQFANHG-----------SLE 136 (278)
Q Consensus 73 i~L~~~~~~~a~V~~~GA~l~s~~~~~--g--~evL~~~~-~~~~~~~~~irGGiPv~fP~fG~~~-----------~~~ 136 (278)
++|+|+++.+++|..+||.|.+|+.++ | +++||..+ .+.|....+..| +++.||.||+. +++
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g--~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFG--ATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccC--CcccCcCCeecCCEEEECCEEEEcc
Confidence 678988569999999999999999743 3 68998774 556665545554 56789999863 233
Q ss_pred -------C----CceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEE
Q 023738 137 -------K----HGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRN 205 (278)
Q Consensus 137 -------~----HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N 205 (278)
+ |||+|. .|++.... +..|+|++...+ ...+|||.|+++++|+|.++++|+++++++|
T Consensus 80 ~Ne~~~~LHGg~~G~~~~-~w~~~~~~---------~~~v~l~~~~~~-~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~ 148 (326)
T cd09019 80 ANEGPNHLHGGPKGFDKR-VWDVEEVE---------ENSVTFSLVSPD-GEEGFPGNLTVTVTYTLTDDNELTIEYEATT 148 (326)
T ss_pred CCCCCcccCCCCccccCc-EEeEEecc---------CCEEEEEEECCc-ccCCCCeEEEEEEEEEECCCCEEEEEEEEEe
Confidence 3 666775 99998752 346899998763 4799999999999999986579999999876
Q ss_pred cCCCCceeeeeecccccccCC
Q 023738 206 TNTDGKSFAFTFAYHTYFAVS 226 (278)
Q Consensus 206 ~N~gd~p~pf~~g~HpYF~v~ 226 (278)
+++|||++|+||||+++
T Consensus 149 ----~~~~p~~~g~HpyFnl~ 165 (326)
T cd09019 149 ----DKPTPVNLTNHSYFNLA 165 (326)
T ss_pred ----CCCeEecccceeeEecC
Confidence 38999999999999998
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.79 E-value=4e-18 Score=160.69 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=110.4
Q ss_pred CCeeEEEEEcCCceEEEEECCCcEEEEEEeC--CC--eEEEe-cCCccccCCCCCCcCCcceeccccCCCC---------
Q 023738 68 NGLEKVVLREVRGCSAEIYLYGGQVISWKNE--YG--EELLF-LSSKATFTHPKPIRGGIPICFPQFANHG--------- 133 (278)
Q Consensus 68 ~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~--~g--~evL~-~~~~~~~~~~~~irGGiPv~fP~fG~~~--------- 133 (278)
..+..++|+|+. .+++|..+||.|++|+.+ +| .+++. +.+...|....+..| +++.||.||+.
T Consensus 7 ~~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~G--a~lgp~anRI~~g~~~~~G~ 83 (337)
T PLN00194 7 EKPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYFG--AIVGRVANRIKGAKFTLNGV 83 (337)
T ss_pred CeeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccC--CeeCCCCCceeCCEEEECCE
Confidence 346778999976 999999999999999873 34 45553 333333433334444 34999999873
Q ss_pred --C-------CCCCceec---CcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEE
Q 023738 134 --S-------LEKHGFAR---SRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTS 201 (278)
Q Consensus 134 --~-------~~~HGfaR---~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~ 201 (278)
+ ..+||+.+ .+.|+|.... +++...|+|++...+ ...+|||.|+++++|+|.++++|++++
T Consensus 84 ~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~------~~~~~~v~~~l~~~~-~~~gyP~~~~~~v~Y~L~~~~~L~i~~ 156 (337)
T PLN00194 84 TYKLPPNNGPNSLHGGPKGFSKVVWEVAKYK------KGEKPSITFKYHSFD-GEEGFPGDLSVTVTYTLLSSNTLRLDM 156 (337)
T ss_pred EEEeccCCCCcccCCCCcccCceEEeEEEec------cCCCcEEEEEEECCC-cCCCCCEEEEEEEEEEECCCCeEEEEE
Confidence 1 24697654 4899998753 223467999998754 478999999999999998557899999
Q ss_pred EEEEcCCCCceeeeeecccccccCCC
Q 023738 202 RIRNTNTDGKSFAFTFAYHTYFAVSD 227 (278)
Q Consensus 202 ~V~N~N~gd~p~pf~~g~HpYF~v~d 227 (278)
+++|. +++|||++|+||||+++.
T Consensus 157 ~~~n~---~~~~p~~~g~HpYFnL~~ 179 (337)
T PLN00194 157 EAKPL---NKATPVNLAQHTYWNLAG 179 (337)
T ss_pred EEEEC---CCCeEEEccccceEEcCC
Confidence 99875 689999999999999973
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.77 E-value=7.3e-18 Score=158.80 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=110.6
Q ss_pred CeeEEEEEcCCceEEEEECCCcEEEEEEeC---CCeEEE-ecCCccccCCCCCCcCCcceeccccCCCC-----------
Q 023738 69 GLEKVVLREVRGCSAEIYLYGGQVISWKNE---YGEELL-FLSSKATFTHPKPIRGGIPICFPQFANHG----------- 133 (278)
Q Consensus 69 gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~---~g~evL-~~~~~~~~~~~~~irGGiPv~fP~fG~~~----------- 133 (278)
.+..++|+|.++++++|..+||.|.+|+.+ ...+++ -+.+.+.|....+..|. ++.||.||+.
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~~Ga--~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAYLGA--TVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCccCC--CcCCCCceecCCEEEECCEEE
Confidence 357899999888999999999999999963 224554 34434445433344443 5889999873
Q ss_pred -------CCCCCcee---cCcCeEEEe-cCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEE
Q 023738 134 -------SLEKHGFA---RSRVWSIDP-DPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSR 202 (278)
Q Consensus 134 -------~~~~HGfa---R~~~W~v~~-~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~ 202 (278)
...+||+. +.+.|++.. .. ...|+|++.+.+ ...+||+.++++++|+|+++++|+++++
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~---------~~~v~l~~~~~~-~~~gyPg~l~~~vtY~L~~~~~L~i~~~ 150 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQE---------EVQVKFSLESPD-GDQGFPGNLTVSVTYTLTDDNELTIEYE 150 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeecC---------CCEEEEEEECCC-cCCCCCeEEEEEEEEEECCCCEEEEEEE
Confidence 23599998 889999976 42 336899998654 3689999999999999966688999998
Q ss_pred EEEcCCCCceeeeeecccccccCCC
Q 023738 203 IRNTNTDGKSFAFTFAYHTYFAVSD 227 (278)
Q Consensus 203 V~N~N~gd~p~pf~~g~HpYF~v~d 227 (278)
++ +++++||++++||||++++
T Consensus 151 a~----~d~~tp~nlt~H~YFnL~g 171 (335)
T TIGR02636 151 AT----TDKATPFNLTNHVYFNLDG 171 (335)
T ss_pred EE----ECCceEEeccccceEEcCC
Confidence 75 6899999999999999975
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.76 E-value=3.1e-17 Score=155.03 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=110.0
Q ss_pred CCeeEEEEEcCCceEEEEECCCcEEEEEEeC--CC--eEEE-ecCCccccCCCCCCcCCcceeccccCCCC---------
Q 023738 68 NGLEKVVLREVRGCSAEIYLYGGQVISWKNE--YG--EELL-FLSSKATFTHPKPIRGGIPICFPQFANHG--------- 133 (278)
Q Consensus 68 ~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~--~g--~evL-~~~~~~~~~~~~~irGGiPv~fP~fG~~~--------- 133 (278)
..+..++|+|.++++++|..+||.|.+|+.+ +| .+++ -+.+.+.|....+..|. ++-||.||+.
T Consensus 7 ~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga--~iGr~anRI~~g~f~~~G~ 84 (342)
T PRK11055 7 QPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGA--SVGRYANRIANSRFTLDGE 84 (342)
T ss_pred CeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCc--eeCCcCCcccCCEEEECCE
Confidence 4567899998878999999999999999973 45 4544 44444455433344443 6899999873
Q ss_pred ---------CCCCCcee---cCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEE
Q 023738 134 ---------SLEKHGFA---RSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTS 201 (278)
Q Consensus 134 ---------~~~~HGfa---R~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~ 201 (278)
...+||+. +.+.|++.... ...|+|++...+ ...+||+.++++++|+|.++++|++++
T Consensus 85 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---------~~~v~l~~~~~~-g~~GyPg~l~~~vtY~L~~~~~l~i~~ 154 (342)
T PRK11055 85 TYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN---------DRQVTFSLSSPD-GDQGFPGNLGATVTYRLTDDNRVSITY 154 (342)
T ss_pred EEEcccCCCCcccCCCCcccCCcEEEEEEcc---------CCEEEEEEECCC-cCCCCCeEEEEEEEEEEcCCCeEEEEE
Confidence 24689985 56899997652 236889988653 468999999999999998756777777
Q ss_pred EEEEcCCCCceeeeeecccccccCCC
Q 023738 202 RIRNTNTDGKSFAFTFAYHTYFAVSD 227 (278)
Q Consensus 202 ~V~N~N~gd~p~pf~~g~HpYF~v~d 227 (278)
++ + +++++||++++||||+++.
T Consensus 155 ~a--~--~d~~tp~nlt~H~YFnL~g 176 (342)
T PRK11055 155 RA--T--VDKPCPVNLTNHAYFNLDG 176 (342)
T ss_pred EE--E--cCCCeEEeccccceEECCC
Confidence 64 5 7899999999999999974
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.65 E-value=5.8e-15 Score=140.97 Aligned_cols=149 Identities=10% Similarity=0.028 Sum_probs=111.5
Q ss_pred cCCCeeEEEEEcCCceEEEEECCCcEEEEEEe--CC-C--eEE-EecCC-ccccCCCCCCcCCcceeccccCCCC-----
Q 023738 66 GVNGLEKVVLREVRGCSAEIYLYGGQVISWKN--EY-G--EEL-LFLSS-KATFTHPKPIRGGIPICFPQFANHG----- 133 (278)
Q Consensus 66 ~~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~--~~-g--~ev-L~~~~-~~~~~~~~~irGGiPv~fP~fG~~~----- 133 (278)
..+-+..++|+|++ ++++|..+||.|++++. ++ | +++ |-+.+ .+.|....+. .|+ ++.||.||+.
T Consensus 9 ~~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y-~Ga-~iGr~AnRI~~G~f~ 85 (376)
T PTZ00485 9 PYGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDY-MGA-TVGRCAGRVAGGVFT 85 (376)
T ss_pred ecCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCc-cCc-EeCCCCCeEECCEEE
Confidence 36778999999997 99999999999999987 23 5 354 44533 4455434344 443 5789999862
Q ss_pred -------------CCCCC----ceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEc--CC
Q 023738 134 -------------SLEKH----GFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLG--PG 194 (278)
Q Consensus 134 -------------~~~~H----GfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~--~~ 194 (278)
...+| ||- .+.|++.... +.+...|+|++.. +....+||+.++++++|+|. ++
T Consensus 86 ldG~~YqL~~Neg~n~LHGG~~gf~-~~~W~v~~~~------~~~~~~V~f~~~~-~dg~~GfPG~l~v~vtYtL~~~~~ 157 (376)
T PTZ00485 86 LDGVKYYTQKNRGENTCHCGDDAYH-KKHWGMKLIE------TANVIGVRFNYTS-PHMENGFPGELVSKVTYSIERSKP 157 (376)
T ss_pred ECCEEEEccCCCCCcccCCCCCccc-eeeeeEEEec------cCCCcEEEEEEEC-CCcCCCCCEEEEEEEEEEEecCCC
Confidence 12344 665 4899985432 1234579999987 44689999999999999996 35
Q ss_pred CcEEEE---EEEEEcCCCCceeeeeecccccccCCC
Q 023738 195 GDLMLT---SRIRNTNTDGKSFAFTFAYHTYFAVSD 227 (278)
Q Consensus 195 ~~L~l~---~~V~N~N~gd~p~pf~~g~HpYF~v~d 227 (278)
++|+++ ++++|+ +++++||++++|+||++++
T Consensus 158 ~~L~i~y~a~~~~n~--~d~~Tp~nltnH~YFNL~g 191 (376)
T PTZ00485 158 NVLKTIYDSYIPETS--PADATPVNIFNHAYWNLNG 191 (376)
T ss_pred CEEEEEEEEEecccc--CCccceeeeccceeEEcCC
Confidence 889999 777777 9999999999999999964
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.32 E-value=1.4e-11 Score=113.54 Aligned_cols=135 Identities=15% Similarity=0.119 Sum_probs=97.0
Q ss_pred EEECCCcEEEEEEeCCCeEEEecCCcccc-----C--CCC---CCcCCccee--ccccCCC-----CCCCCCceecCcCe
Q 023738 84 EIYLYGGQVISWKNEYGEELLFLSSKATF-----T--HPK---PIRGGIPIC--FPQFANH-----GSLEKHGFARSRVW 146 (278)
Q Consensus 84 ~V~~~GA~l~s~~~~~g~evL~~~~~~~~-----~--~~~---~irGGiPv~--fP~fG~~-----~~~~~HGfaR~~~W 146 (278)
.++..|..|.+... +|.++.|.+..... . ... ..-||--.- ++++|.- ..+++||++++.+|
T Consensus 4 vlp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~p~ 82 (284)
T cd09023 4 VLPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNTPA 82 (284)
T ss_pred EcccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCCCc
Confidence 35568999999988 58899998753221 1 000 111232222 4454432 24799999999999
Q ss_pred EEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecccccccCC
Q 023738 147 SIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVS 226 (278)
Q Consensus 147 ~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF~v~ 226 (278)
+++.... ++++...|+++....+....+|||.++.+++|+|.+ +.|+++++|+|. |+++||+.+++|+||..+
T Consensus 83 ~~~~~~~----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~-~~l~i~~~VtN~--g~~~~P~~~~~H~n~~~p 155 (284)
T cd09023 83 ELVGVEE----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLGS-NEIRLEDRVTNE--GFRPTPHMLLYHVNFGYP 155 (284)
T ss_pred ceEEEEe----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCC-ceEEEEEEEEeC--CCCCCcceEEeeEEcCCc
Confidence 9987642 112344566666654445678999999999999987 899999999999 999999999999999875
No 18
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=7.2e-11 Score=109.57 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=106.4
Q ss_pred EecCCCeeEEEEEcCCceEEEEECCCcEEEEEEeCC--C--e-EEEecCCccccCCCCCCcCCcceeccccC----CC--
Q 023738 64 CKGVNGLEKVVLREVRGCSAEIYLYGGQVISWKNEY--G--E-ELLFLSSKATFTHPKPIRGGIPICFPQFA----NH-- 132 (278)
Q Consensus 64 ~~~~~gl~~i~L~~~~~~~a~V~~~GA~l~s~~~~~--g--~-evL~~~~~~~~~~~~~irGGiPv~fP~fG----~~-- 132 (278)
..+.+....++|.++.+++|+|..+||.|+|+..++ | . -+|-..+-+.|..... |+|| |.
T Consensus 14 ~~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~---------~yfGatvGRvAN 84 (353)
T KOG1604|consen 14 TDQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDA---------AYFGATVGRVAN 84 (353)
T ss_pred ccccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCc---------ceecceehhhhh
Confidence 334667889999999999999999999999999743 3 2 3676676655554221 3443 22
Q ss_pred --C------------------CCCCCc----eecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEE
Q 023738 133 --G------------------SLEKHG----FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLR 188 (278)
Q Consensus 133 --~------------------~~~~HG----faR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~t 188 (278)
. +...|| |-+ ..|++..... + . .++|+... ++..++||.+..++++
T Consensus 85 RI~~G~F~ldgk~y~lt~N~g~n~lHgg~~gf~~-~~w~v~~~~~------~-~-~i~f~~~s-~dg~eg~PG~l~V~vt 154 (353)
T KOG1604|consen 85 RIAKGKFSLDGKPYKLTVNNGKNTLHGGIKGFDK-VIWEVVKHQP------D-G-VIVFSHLS-PDGDEGFPGDLKVTVT 154 (353)
T ss_pred hcccceEEECCceEEecccCCCccccCCcccccc-eEEEEEEecC------C-C-EEEEEEEC-CCCCCCCCccEEEEEE
Confidence 1 234555 665 7999998752 1 2 26888877 6678999999999999
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeecccccccCCC
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSD 227 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF~v~d 227 (278)
|+|..++.|.+.+..+-. +++.|++++.|+|||+..
T Consensus 155 YtLn~~n~l~i~~~A~~~---~~~TPiNLtnHsYfNL~g 190 (353)
T KOG1604|consen 155 YTLNVANRLLIMMEATAL---DKATPINLTNHSYFNLAG 190 (353)
T ss_pred EEEccCCeeeeeehhhcc---CCCcceeeccceeEeccC
Confidence 999988888888876433 789999999999999973
No 19
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=98.33 E-value=1.5e-06 Score=80.87 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=61.4
Q ss_pred CCCCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcC-CCcEEEEEEEEEcCCCCce
Q 023738 134 SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGP-GGDLMLTSRIRNTNTDGKS 212 (278)
Q Consensus 134 ~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~-~~~L~l~~~V~N~N~gd~p 212 (278)
.+++||-+.+.+|+..-.... .+++...+.++-.. +....||++|+++.+|+|.. ...|.|+++|+|. ++.|
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~---~d~~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~--g~~p 133 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVG---EDASGDYLALTGEY--EYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNL--SAQP 133 (293)
T ss_pred ccCCcCCcCCCCccceEEEEE---ecCCCCEEEEEEEE--EeeeccCccEEEEEEEEEeCCCCEEEEEEEEEEC--CCCC
Confidence 468999966666654321100 01233344444433 33468999999999999975 3689999999999 9999
Q ss_pred eeeeecccccccCC
Q 023738 213 FAFTFAYHTYFAVS 226 (278)
Q Consensus 213 ~pf~~g~HpYF~v~ 226 (278)
||+.+++|+||...
T Consensus 134 ~p~~~~~H~nfg~~ 147 (293)
T cd09269 134 MPLMYMCHMNYAYV 147 (293)
T ss_pred ChhhEecccccCCC
Confidence 99999999999873
No 20
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=98.01 E-value=3.1e-05 Score=72.36 Aligned_cols=149 Identities=13% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCeeEEEEEcCCceEEEEE-CCCcEEEEEEeCCCeEEEecCCcc-----ccC--CCCCCcCCcc----ee-ccccCCCC-
Q 023738 68 NGLEKVVLREVRGCSAEIY-LYGGQVISWKNEYGEELLFLSSKA-----TFT--HPKPIRGGIP----IC-FPQFANHG- 133 (278)
Q Consensus 68 ~gl~~i~L~~~~~~~a~V~-~~GA~l~s~~~~~g~evL~~~~~~-----~~~--~~~~irGGiP----v~-fP~fG~~~- 133 (278)
.|+..++|+|+.+++++|. ..|..|.+... +|.++-|.+... .+. .+..+..+-- -| +..+|.-.
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 5889999999777887766 58999999998 589999988652 111 0000111111 11 11222211
Q ss_pred ----CCCCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEE--cCCCcEEEEEEEEEcC
Q 023738 134 ----SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITL--GPGGDLMLTSRIRNTN 207 (278)
Q Consensus 134 ----~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL--~~~~~L~l~~~V~N~N 207 (278)
.+++||=..+.+|+.+.... .+++...+.++=... ....|-..+.++-++++ .. +.|.|+.+|+|.
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~----~~~~~~~i~v~G~v~--~~~~fg~~l~l~r~i~~~~g~-~~i~i~d~VtN~- 152 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEI----WDGDGYEIEVSGEVR--EAAGFGENLRLERTIRLRAGS-NTIRIEDRVTNL- 152 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEE----ESSTT--EEEEEEEE--EEETTTEEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred cCCccccccccccCCCcceEEEEE----ecCCCcEEEEEEEEE--EEEeccCcEEEEEEEEEECCC-cEEEEEEEEEEC-
Confidence 36999999999998665431 122334454443332 23455566677767776 44 789999999999
Q ss_pred CCCceeeeeecccccccCC
Q 023738 208 TDGKSFAFTFAYHTYFAVS 226 (278)
Q Consensus 208 ~gd~p~pf~~g~HpYF~v~ 226 (278)
+..|+|+.+.+|.=|--+
T Consensus 153 -~~~p~p~m~lyH~N~G~p 170 (302)
T PF14486_consen 153 -GFQPMPLMYLYHMNFGYP 170 (302)
T ss_dssp -SSS-EEEEEEEEEEE-TT
T ss_pred -CCCCchhHHhhhhccCcc
Confidence 999999999999877766
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.11 E-value=0.03 Score=51.48 Aligned_cols=128 Identities=17% Similarity=0.121 Sum_probs=75.8
Q ss_pred eeEEEEEcCCceEEEEE-CCCcEEEEEEeCCCeEEEecCCc---cccC---CCCCCcCCcceeccccC---CCC--CCCC
Q 023738 70 LEKVVLREVRGCSAEIY-LYGGQVISWKNEYGEELLFLSSK---ATFT---HPKPIRGGIPICFPQFA---NHG--SLEK 137 (278)
Q Consensus 70 l~~i~L~~~~~~~a~V~-~~GA~l~s~~~~~g~evL~~~~~---~~~~---~~~~irGGiPv~fP~fG---~~~--~~~~ 137 (278)
..+++|+|+. .+++|. ..|++|+++...+|.++||.... .... ..-..+||- -+||-.- |.. ..+.
T Consensus 4 ~~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~P 81 (274)
T PF14315_consen 4 GNCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPP 81 (274)
T ss_pred ceEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCC
Confidence 3789999997 777776 68999999998767777743321 1111 112334443 4442111 000 0111
Q ss_pred CceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCC-cEEEEEEEEEcCCCCceeeee
Q 023738 138 HGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGG-DLMLTSRIRNTNTDGKSFAFT 216 (278)
Q Consensus 138 HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~-~L~l~~~V~N~N~gd~p~pf~ 216 (278)
--+.-+.+|++... ...|+|+-..++. ..++++.+|+|.++. .++++.+++|. ++.++++.
T Consensus 82 d~~ld~~p~~~~~~----------~~~v~L~s~~~~~------tgiq~~~~i~l~~~~~~i~v~~~i~N~--~~~~~~~a 143 (274)
T PF14315_consen 82 DPVLDNGPYEVEID----------DDGVRLTSPPSPK------TGIQKERTITLDADRPSIEVTHRITNI--GDWPVEWA 143 (274)
T ss_pred cccccCCceeEEEc----------CCEEEEecCCCCc------cCcEEEEEEEECCCCCEEEEEEEEEeC--CCCcceee
Confidence 12333456666541 3346665544322 257899999998743 59999999999 88887655
Q ss_pred e
Q 023738 217 F 217 (278)
Q Consensus 217 ~ 217 (278)
+
T Consensus 144 ~ 144 (274)
T PF14315_consen 144 P 144 (274)
T ss_pred e
Confidence 3
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=94.54 E-value=1.4 Score=41.95 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=67.6
Q ss_pred eeEEEEEcCCceEEEEECCCcEEEEEEeCCC--------eEEEecCCccccCCCCCCcCCcceeccc-cCCCCC-CCCCc
Q 023738 70 LEKVVLREVRGCSAEIYLYGGQVISWKNEYG--------EELLFLSSKATFTHPKPIRGGIPICFPQ-FANHGS-LEKHG 139 (278)
Q Consensus 70 l~~i~L~~~~~~~a~V~~~GA~l~s~~~~~g--------~evL~~~~~~~~~~~~~irGGiPv~fP~-fG~~~~-~~~HG 139 (278)
-+.|+|+++. .+++|...||.|.++..++= ..+..+.+.. ...|+- .|.... .+.-.
T Consensus 73 ~~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------------~~~y~~~~gl~~~~~~~~~ 139 (366)
T TIGR03593 73 AKRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA------------ERLYVAQSGLIGANGADLA 139 (366)
T ss_pred CCeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC------------CceeEEEeccccCCCCccc
Confidence 3579999986 99999999999999986321 2222222211 111221 111110 01000
Q ss_pred -eecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCC-CcEEEEEEEEEcCCCCceee
Q 023738 140 -FARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPG-GDLMLTSRIRNTNTDGKSFA 214 (278)
Q Consensus 140 -faR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~-~~L~l~~~V~N~N~gd~p~p 214 (278)
...+..|++....-.+ .++...|+|++.... ...++.+|+|..+ -.+.++++|+|. ++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~l---~~~~~~v~l~~~~~~--------G~~v~k~ytf~~~sY~i~v~~~v~N~--~~~~~~ 203 (366)
T TIGR03593 140 LPGHRTVWQAEGGEYTL---TPGQLPVTLTWDNSN--------GVTVTKTYTFDRDSYLIDVEYKVTNN--GDAPVS 203 (366)
T ss_pred CCCCCceEEeCCCceee---CCCCEEEEEEEECCC--------CeEEEEEEEEeCCeEEEEeEEEEEeC--CCCCee
Confidence 1345678887532100 122345777765422 3789999999874 367788888887 776654
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=90.94 E-value=4.1 Score=36.67 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=56.0
Q ss_pred EEEEEcCCceEEEEECCCcEEEEEEeC--------CCeEEEecCCccccCCCCCCcCCcceeccccCCCCCCCCCceecC
Q 023738 72 KVVLREVRGCSAEIYLYGGQVISWKNE--------YGEELLFLSSKATFTHPKPIRGGIPICFPQFANHGSLEKHGFARS 143 (278)
Q Consensus 72 ~i~L~~~~~~~a~V~~~GA~l~s~~~~--------~g~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~~~~HGfaR~ 143 (278)
.++|+++. .++++...||.|.+|..+ ++.++-...+...- .-|.-|.+.-........- .+
T Consensus 1 ~v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~~--------~~~~~~~l~~~~~~~~~~~--~~ 69 (270)
T PF14849_consen 1 RVTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDEE--------NYPLAFGLVFNTGGAQLPT--ND 69 (270)
T ss_dssp -EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETTE--------EEEEEEEEESTT--TTSGG--S-
T ss_pred CEEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCCc--------ceEEEEcccccCccccCCC--cc
Confidence 47899986 999999999999999863 11122222221100 0112223321110000111 56
Q ss_pred cCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcC-CCcEEEEEEEEEcCCCCceeee
Q 023738 144 RVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGP-GGDLMLTSRIRNTNTDGKSFAF 215 (278)
Q Consensus 144 ~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~-~~~L~l~~~V~N~N~gd~p~pf 215 (278)
..|++......+ ...++...|+|+....+ .+.++-+|+|.+ +-.+.++++++|. ++.+...
T Consensus 70 ~~f~~~~~~~~l-~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~--~~~~~~~ 131 (270)
T PF14849_consen 70 LYFSVSQKSYTL-KEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNL--SDQPVSL 131 (270)
T ss_dssp -B-B-S-SEEE---TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE----SSS-EEE
T ss_pred ceEEEcCCceee-ccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECC--CCCcccc
Confidence 678776531000 00124566888776532 368999999985 3456677777776 7666554
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=90.91 E-value=5.9 Score=39.97 Aligned_cols=121 Identities=14% Similarity=0.156 Sum_probs=64.3
Q ss_pred EEEEEcCCceEEEEECCCcEEEEEEeCC-----C--eEEEecCCccccCCCCCCcCCcceeccccCCCCC--CCCCceec
Q 023738 72 KVVLREVRGCSAEIYLYGGQVISWKNEY-----G--EELLFLSSKATFTHPKPIRGGIPICFPQFANHGS--LEKHGFAR 142 (278)
Q Consensus 72 ~i~L~~~~~~~a~V~~~GA~l~s~~~~~-----g--~evL~~~~~~~~~~~~~irGGiPv~fP~fG~~~~--~~~HGfaR 142 (278)
.++++++. .+++|...||.|.++..++ + .++-.+++... ..-+.-+=|.|..++ ...++
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~--------~~y~~~~g~~~~~~~~~~~~~~--- 107 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE--------HPYFAQSGLTGADGPDNVPNPD--- 107 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC--------cceeeeeccccCCCcccccCCC---
Confidence 89999986 9999999999999998642 1 12222221100 000001111111000 01111
Q ss_pred CcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCC-CcEEEEEEEEEcCCCCceeee
Q 023738 143 SRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPG-GDLMLTSRIRNTNTDGKSFAF 215 (278)
Q Consensus 143 ~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~-~~L~l~~~V~N~N~gd~p~pf 215 (278)
+..|+...... .....++...|+|++... -...++.+|+|.++ -.++++++|+|. +..++..
T Consensus 108 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--------~g~~~~k~yt~~~~~Y~~~~~~~v~n~--~~~~~~~ 170 (521)
T PRK01318 108 RTLYTADGDSL-VLADGQNELPVTLTWTNG--------NGLTFTKTYTLDRGDYMFTVEYSVNNN--SGAPVNL 170 (521)
T ss_pred Ccceeecccce-eeccCCCceEEEEEEECC--------CCeEEEEEEEEcCCceEEEEEEEEEcC--CCCceee
Confidence 35787663211 001122445677776542 13678899999763 357777777776 7766544
No 25
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=79.96 E-value=50 Score=30.45 Aligned_cols=138 Identities=15% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCeeEEEEEcCCceEEEEECC-CcEEEEEEeC-CCe---EEEecCCccccCCC-----CCCcCCc--------------
Q 023738 67 VNGLEKVVLREVRGCSAEIYLY-GGQVISWKNE-YGE---ELLFLSSKATFTHP-----KPIRGGI-------------- 122 (278)
Q Consensus 67 ~~gl~~i~L~~~~~~~a~V~~~-GA~l~s~~~~-~g~---evL~~~~~~~~~~~-----~~irGGi-------------- 122 (278)
..|.+.+.+++.. +.+.|... ||.|.+|... ... +.|-...+++...- ..--.||
T Consensus 4 ~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~~ 82 (278)
T PF09095_consen 4 FDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEEL 82 (278)
T ss_dssp SSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HHH
T ss_pred CCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCccc
Confidence 5688999999987 99999876 9999999974 233 34444444443321 0011121
Q ss_pred --ceeccccCCCC------------------CCCCCceecCcCeEEEecCCCCCCCCCCccEEEEEEecCcchhccCCee
Q 023738 123 --PICFPQFANHG------------------SLEKHGFARSRVWSIDPDPPPFSANSSSQACVDLILKHSEEEVKIWPHR 182 (278)
Q Consensus 123 --Pv~fP~fG~~~------------------~~~~HGfaR~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~ 182 (278)
-+.+=|--|.. ...-=|-.-+.+|++.... +. |+|+-... ..+++
T Consensus 83 ~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~--------~~--v~f~r~G~-----~~~~~ 147 (278)
T PF09095_consen 83 KEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR--------DE--VTFERDGG-----VEGHP 147 (278)
T ss_dssp HTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES--------SE--EEEEEEEE-----ESEEE
T ss_pred cccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC--------Cc--eEEEEecc-----cccCc
Confidence 11111211110 0011222334677776542 12 66654331 16788
Q ss_pred EEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 183 YEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 183 f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
+.++=+|+|.. ++|.++++++ ....+.++-|+.=+|-.
T Consensus 148 ~~l~K~y~l~~-~~l~V~Y~l~-~~~~~~~~~f~vEiNla 185 (278)
T PF09095_consen 148 ITLEKRYRLTK-NGLQVDYRLT-ESPEPISLLFGVEINLA 185 (278)
T ss_dssp EEEEEEEEEET-TEEEEEEEEE--ESS---EEEEEEEEE-
T ss_pred eEEEEEEEEcC-CEEEEEEEEE-ECCCCcceEEEEEEeec
Confidence 99999999998 8999999999 41133444555444444
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=63.60 E-value=8.7 Score=30.27 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=24.8
Q ss_pred EEEEcCCCcEEEEEEEEEcCCCCceeeeeecccccccCC
Q 023738 188 RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVS 226 (278)
Q Consensus 188 tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF~v~ 226 (278)
.++|.. ...+++++|.|+ ||+|+-++--+|-| .++
T Consensus 12 ~IelN~-gr~~~~i~V~Nt--GDRPIQVGSHfHF~-EvN 46 (106)
T COG0832 12 DIELNA-GRPTVTIEVANT--GDRPIQVGSHFHFF-EVN 46 (106)
T ss_pred cEEEeC-CCcceEEEEeec--CCCceEeecceeeh-hhC
Confidence 356655 566778889999 99988777777753 443
No 27
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=58.54 E-value=14 Score=29.03 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeecccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHT 221 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~Hp 221 (278)
++|.. +.=.++++|+|+ ||+|+-++-=+|-
T Consensus 12 I~lN~-gr~~~~l~V~N~--GDRPIQVGSH~HF 41 (100)
T PF00699_consen 12 IELNA-GRERITLEVTNT--GDRPIQVGSHYHF 41 (100)
T ss_dssp EETTT-TSEEEEEEEEE---SSS-EEEETTS-G
T ss_pred EEecC-CCcEEEEEEEeC--CCcceEEccccCH
Confidence 45655 556788999999 9998777666664
No 28
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=55.89 E-value=17 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=21.5
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeecccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHT 221 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~Hp 221 (278)
++|.. +.=.+++.|+|+ ||+|+-++-=+|-
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDRPIQVGSHyHF 42 (101)
T TIGR00192 13 ITINE-GRKTVSVKVKNT--GDRPIQVGSHFHF 42 (101)
T ss_pred EEeCC-CCcEEEEEEEeC--CCcceEEccccch
Confidence 45655 445578889999 9998777666664
No 29
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=55.61 E-value=1.6e+02 Score=27.01 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=70.4
Q ss_pred EEEcCCceEEEEECCCcEEEEEEeCCCeEEEecCC-ccccCCCC-CCcCCcce--eccccCCCCCCCCCce-ecCcCeEE
Q 023738 74 VLREVRGCSAEIYLYGGQVISWKNEYGEELLFLSS-KATFTHPK-PIRGGIPI--CFPQFANHGSLEKHGF-ARSRVWSI 148 (278)
Q Consensus 74 ~L~~~~~~~a~V~~~GA~l~s~~~~~g~evL~~~~-~~~~~~~~-~irGGiPv--~fP~fG~~~~~~~HGf-aR~~~W~v 148 (278)
+|+..+ .++++...-|.|.||+. +|+++|.... ...|.... .-+|+... +-.|-.. ..+=. .+...+++
T Consensus 1 tV~g~~-f~~~Fdk~~G~l~s~~~-~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~a----g~~~~~~~~~~~~~ 74 (276)
T PF02929_consen 1 TVSGKD-FSYVFDKKTGTLTSYKY-NGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDA----GLDRLVTRVRSVKV 74 (276)
T ss_dssp -EEETT-EEEEEETTTTCEEEEEE-TTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHT----TTTCEEEEEEEEEE
T ss_pred CCccCC-EEEEEECCCCeEEEEEE-CCEEeecCCCcccEEeCCCCCccccccchhHHHHHHc----CccceeeEEeEEEE
Confidence 356664 88889988889999998 6788874322 12232110 00111100 0012111 11111 11123333
Q ss_pred EecCCCCCCCCCCccEEEEEEecCcchhccCCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecccccccCCCc
Q 023738 149 DPDPPPFSANSSSQACVDLILKHSEEEVKIWPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDI 228 (278)
Q Consensus 149 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF~v~d~ 228 (278)
.+. +++..|++....... .-+..|.++++|++..+..|.++++++-. ++-|..--+|+.--+. .+.
T Consensus 75 ~~~--------~~~~~v~v~~~~~~~---~~~~~~~~~~~y~i~~dG~i~v~~~~~~~--~~~p~lpRiGl~~~Lp-~~~ 140 (276)
T PF02929_consen 75 EES--------DGDVAVTVTARYAAP---NKSWNFEVTITYTIYADGTIKVDMTFEPS--GDLPELPRIGLQFQLP-KSF 140 (276)
T ss_dssp EEE--------ESESEEEEEEEEEET---TCCEEEEEEEEEEEETTSEEEEEEEEEEE--TTSSC-SEEEEEEEEE-TTE
T ss_pred Eec--------CCCceEEEEEEEeCC---CcceEEEEEEEEEEcCCCEEEEEEEEEeC--CCCCCccceEEEEEec-Ccc
Confidence 332 123334443332111 11224899999999987889999888766 4433333344443222 134
Q ss_pred ceeEEecCC-CCcccccc
Q 023738 229 SEVRVEGLE-TLDYLDNL 245 (278)
Q Consensus 229 ~~~~v~GL~-g~~y~D~~ 245 (278)
.+++--|+- .-.|.|+.
T Consensus 141 ~~v~wyGrGP~EnY~DRk 158 (276)
T PF02929_consen 141 DNVEWYGRGPHENYPDRK 158 (276)
T ss_dssp EEEEEEEEESS--BTTB-
T ss_pred eeEEEECCCCCCCCcccc
Confidence 455544432 23666643
No 30
>PRK13203 ureB urease subunit beta; Reviewed
Probab=55.42 E-value=16 Score=28.79 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=21.7
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
+.|.. +.=.++++|+|+ ||+|+-++-=+|-|
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDRPIQVGSH~HF~ 43 (102)
T PRK13203 13 IELNA-GRETVTLTVANT--GDRPIQVGSHYHFF 43 (102)
T ss_pred EEeCC-CCCEEEEEEEeC--CCCceEEccccchh
Confidence 45555 445578889999 99987777666643
No 31
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=55.36 E-value=16 Score=28.77 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=21.3
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeecccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHT 221 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~Hp 221 (278)
++|.. +.=.++++|+|+ ||+|+-++-=+|-
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDRpIQVGSH~HF 42 (101)
T cd00407 13 IELNA-GREAVTLKVKNT--GDRPIQVGSHYHF 42 (101)
T ss_pred eEeCC-CCCEEEEEEEeC--CCcceEEccccch
Confidence 45555 445578889899 9998777666664
No 32
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=50.04 E-value=37 Score=25.44 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeeecccccc
Q 023738 179 WPHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTYF 223 (278)
Q Consensus 179 ~P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpYF 223 (278)
-|+.++++.+|.-.. . .|.+++.|. |.++..|.+--+.|-
T Consensus 5 l~~~~~v~~~~~~~~-g--~l~l~l~N~--g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 5 LPYAPEVTARYDPAT-G--NLRLTLSNP--GSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCCEEEEEEECCC-C--EEEEEEEeC--CCCcEEEEEEeCCcC
Confidence 366777777776543 3 455666788 999999998887773
No 33
>PRK13201 ureB urease subunit beta; Reviewed
Probab=49.45 E-value=22 Score=29.41 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
+.|.. +.=.+++.|+|+ ||+|+-++-=+|-|
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyHF~ 43 (136)
T PRK13201 13 VEINN-HHPETVIEVENT--GDRPIQVGSHFHFY 43 (136)
T ss_pred eEeCC-CCCEEEEEEEeC--CCcceEeccccchh
Confidence 45655 445678889999 99988777766653
No 34
>PRK13202 ureB urease subunit beta; Reviewed
Probab=48.42 E-value=26 Score=27.76 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=21.2
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeecccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHT 221 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~Hp 221 (278)
++|..+..=+++++|+|+ ||+|+-++-=+|-
T Consensus 13 I~ln~grr~~~~l~V~Nt--GDRPIQVGSHyHF 43 (104)
T PRK13202 13 IEMNAAALSRLQMRIINA--GDRPVQVGSHVHL 43 (104)
T ss_pred EEeCCCCCceEEEEEEeC--CCCceEEccccch
Confidence 556552124578889899 9998777666664
No 35
>PRK13205 ureB urease subunit beta; Reviewed
Probab=47.96 E-value=24 Score=29.93 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=22.4
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
+.|.. ..=.++++|+|+ ||+|+-++-=+|-|
T Consensus 13 IelN~-GR~~i~L~V~Nt--GDRPIQVGSHyHF~ 43 (162)
T PRK13205 13 LTGNV-GREAKTIEIINT--GDRPVQIGSHFHFA 43 (162)
T ss_pred eEeCC-CCcEEEEEEEeC--CCCceEeccccchh
Confidence 45655 445688899999 99988777766643
No 36
>PRK13204 ureB urease subunit beta; Reviewed
Probab=46.76 E-value=25 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=22.8
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
++|.. +.=.+++.|+|+ ||+|+-++-=+|-|
T Consensus 36 I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyHF~ 66 (159)
T PRK13204 36 IEINQ-GRPRTTLTVRNT--GDRPIQIGSHFHFF 66 (159)
T ss_pred eEeCC-CCcEEEEEEEeC--CCCceEeccccchh
Confidence 56665 455688899999 99988777766643
No 37
>PRK13198 ureB urease subunit beta; Reviewed
Probab=46.44 E-value=26 Score=29.70 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=23.3
Q ss_pred EEEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 188 RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 188 tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
.+.|.. +.=.+++.|+|+ ||+|+-++-=+|-|
T Consensus 40 ~I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyHF~ 71 (158)
T PRK13198 40 PITFNE-NKPVTKVKVRNT--GDRPIQVGSHFHFF 71 (158)
T ss_pred CeEeCC-CCcEEEEEEEeC--CCCceEeccccchh
Confidence 356765 455678899999 99988777766653
No 38
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=41.82 E-value=1.7e+02 Score=25.66 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=36.0
Q ss_pred ccEEEEEEecCcchhccCCeeEEEEE-EEEEcCCCcEEEEEEEEEcCCCCceeeeeec
Q 023738 162 QACVDLILKHSEEEVKIWPHRYEFRL-RITLGPGGDLMLTSRIRNTNTDGKSFAFTFA 218 (278)
Q Consensus 162 ~~~v~l~l~~~~~~~~~~P~~f~l~~-tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g 218 (278)
+-.|++++..+ ...+-||.|+-+. .+++..+..-.+.+.++|. +++++.-...
T Consensus 62 ~R~I~V~F~a~--~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~--sd~~i~g~A~ 115 (188)
T PRK05089 62 SRTITVEFDAN--VNGGLPWEFKPEQRSVDVHPGELNLVFYEAENL--SDRPIVGQAI 115 (188)
T ss_pred CcEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECC--CCCcEEEEEe
Confidence 44567766654 4567888887443 3446555666788999998 9998865544
No 39
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=38.89 E-value=13 Score=26.56 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=16.9
Q ss_pred EEEecCCccccCCCCCCcCCcceecccc
Q 023738 102 ELLFLSSKATFTHPKPIRGGIPICFPQF 129 (278)
Q Consensus 102 evL~~~~~~~~~~~~~irGGiPv~fP~f 129 (278)
+.|+......|- ||+.|||++.|-=
T Consensus 25 ~~L~c~~~~~aY---pI~dGIPvlL~~e 49 (60)
T COG2835 25 QELICPRCKLAY---PIRDGIPVLLPDE 49 (60)
T ss_pred CEEEecccCcee---ecccCccccCchh
Confidence 356655443322 8999999999863
No 40
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=34.14 E-value=46 Score=29.56 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=26.2
Q ss_pred CCeeEEE-EEEEEEcCCCcEEEEEEEEEcCCCCceeeeeeccccc
Q 023738 179 WPHRYEF-RLRITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHTY 222 (278)
Q Consensus 179 ~P~~f~l-~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~HpY 222 (278)
+|..+.+ .=.+.|.. +.=.++++|+|+ ||+|+-++-=+|-|
T Consensus 111 ~PGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyHF~ 152 (208)
T PRK13192 111 YPGEILPGDGEIELNA-GRPAVTLDVTNT--GDRPIQVGSHFHFF 152 (208)
T ss_pred CCCEEEcCCCCeeeCC-CCCEEEEEEEeC--CCCceeeccccchh
Confidence 4554432 12356665 445678889999 99987777666643
No 41
>PRK13986 urease subunit alpha; Provisional
Probab=30.93 E-value=53 Score=29.52 Aligned_cols=30 Identities=17% Similarity=0.406 Sum_probs=22.1
Q ss_pred EEEcCCCcEEEEEEEEEcCCCCceeeeeecccc
Q 023738 189 ITLGPGGDLMLTSRIRNTNTDGKSFAFTFAYHT 221 (278)
Q Consensus 189 ytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~Hp 221 (278)
+.|.. +.=.++++|+|+ ||+|+-++-=+|-
T Consensus 118 I~lN~-gr~~~~l~V~Nt--GDRPIQVGSHyHF 147 (225)
T PRK13986 118 ITINA-GKKAVSVKVKNV--GDRPVQVGSHFHF 147 (225)
T ss_pred eecCC-CCcEEEEEEEeC--CCCceeeccccch
Confidence 56665 445678889999 9998877766664
No 42
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=27.77 E-value=2.3e+02 Score=25.68 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=35.5
Q ss_pred ccEEEEEEecCcchhccCCeeEEEEE-EEEEcCCCcEEEEEEEEEcCCCCceeeeeecc
Q 023738 162 QACVDLILKHSEEEVKIWPHRYEFRL-RITLGPGGDLMLTSRIRNTNTDGKSFAFTFAY 219 (278)
Q Consensus 162 ~~~v~l~l~~~~~~~~~~P~~f~l~~-tytL~~~~~L~l~~~V~N~N~gd~p~pf~~g~ 219 (278)
+-.|++++..+ ...+-||.|+-+. .+++..+..-.+.+.++|. +|+++.-....
T Consensus 106 ~R~I~V~F~a~--v~~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~--sd~~i~G~A~y 160 (232)
T PTZ00128 106 KRLIKIRFLAD--TGSTMPWEFEPLQKEVEVLPGETALAFYRAKNR--SDKPVIGVATY 160 (232)
T ss_pred ceEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECC--CCCcEEEEEec
Confidence 34566666543 4566788887443 3445555566688999998 99988655543
No 43
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=27.56 E-value=80 Score=23.61 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=19.2
Q ss_pred cEEEEEEEEEcCCCCceeeeeecccccccCCCcceeEEecCCCC
Q 023738 196 DLMLTSRIRNTNTDGKSFAFTFAYHTYFAVSDISEVRVEGLETL 239 (278)
Q Consensus 196 ~L~l~~~V~N~N~gd~p~pf~~g~HpYF~v~d~~~~~v~GL~g~ 239 (278)
++.+.++|+|. +++++.+. |+-+..-++.|...+|.
T Consensus 1 ~v~~~l~v~N~--s~~~v~l~------f~sgq~~D~~v~d~~g~ 36 (82)
T PF12690_consen 1 QVEFTLTVTNN--SDEPVTLQ------FPSGQRYDFVVKDKEGK 36 (82)
T ss_dssp -EEEEEEEEE---SSS-EEEE------ESSS--EEEEEE-TT--
T ss_pred CEEEEEEEEeC--CCCeEEEE------eCCCCEEEEEEECCCCC
Confidence 36788899998 88887776 33333446666655553
No 44
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=27.14 E-value=30 Score=32.93 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=16.4
Q ss_pred CCCCcccCceeeecccceecccCchhhh
Q 023738 21 KPGARFDSSISVRSSTTSTATSTASAAE 48 (278)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (278)
++-..+.|++|+.||++|+++++.|-++
T Consensus 341 ~e~~~~~~~sss~ssssssss~~~s~e~ 368 (407)
T KOG2130|consen 341 EESTGLASDSSSDSSSSSSSSSSSSDEE 368 (407)
T ss_pred ccccCcccccccccccccccCCCCCccc
Confidence 4445566666666666666655555444
No 45
>PRK11827 hypothetical protein; Provisional
Probab=24.86 E-value=28 Score=24.82 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=11.7
Q ss_pred CCcCCcceeccccC
Q 023738 117 PIRGGIPICFPQFA 130 (278)
Q Consensus 117 ~irGGiPv~fP~fG 130 (278)
|||-||||+.+-=+
T Consensus 37 PI~dgIPVlL~deA 50 (60)
T PRK11827 37 PLRDGIPVLLETEA 50 (60)
T ss_pred cccCCccccCHHHh
Confidence 89999999988644
No 46
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=22.36 E-value=49 Score=32.40 Aligned_cols=47 Identities=26% Similarity=0.237 Sum_probs=35.8
Q ss_pred eeeecCCCCCCCCCCcccCceeeecccceecccCchhhhhcccCcCC
Q 023738 10 SLSLSPSGSGIKPGARFDSSISVRSSTTSTATSTASAAETNMNSPCR 56 (278)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (278)
+.++-|+..-++|+..++-|+++++|...+.-++++-+..|++....
T Consensus 457 ~~~~~~~sss~~~~sst~~ss~ss~s~~~ss~st~~~~~~e~~~~~~ 503 (568)
T KOG4701|consen 457 SSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLL 503 (568)
T ss_pred eeeeccccccccCCCcccccCCccCCCCcccchhHHHHHHHHHHHHh
Confidence 35677889999999988877777777766677777778888775544
No 47
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=22.25 E-value=1.6e+02 Score=24.91 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=27.6
Q ss_pred ccEEEEEEecCcchhccCCeeEEEEE-EEEEcCCCcEEEEEEEEEcCCCCceeeeee
Q 023738 162 QACVDLILKHSEEEVKIWPHRYEFRL-RITLGPGGDLMLTSRIRNTNTDGKSFAFTF 217 (278)
Q Consensus 162 ~~~v~l~l~~~~~~~~~~P~~f~l~~-tytL~~~~~L~l~~~V~N~N~gd~p~pf~~ 217 (278)
+-.|++++..+ ...+-||.|+-+. .+++..+..-.+.+.++|. +++++.-.+
T Consensus 35 ~R~i~V~F~a~--~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~--s~~~i~g~A 87 (152)
T PF04442_consen 35 SRTITVRFDAN--VNPGLPWEFKPEQRSVKVHPGETALVFYEATNP--SDKPITGQA 87 (152)
T ss_dssp S-EEEEEEEEE--E-TTS-EEEE-S-SEEEEETT--EEEEEEEEE---SSS-EE---
T ss_pred CcEEEEEEEee--cCCCCceEEEeeeeeEEeCCCCEEEEEEEEECC--CCCcEEEEE
Confidence 34566666543 4677899987433 3445555566788999999 999875443
No 48
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=20.98 E-value=2.4e+02 Score=20.96 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=24.7
Q ss_pred CeeEEEEEEEEEcCCCcEEEEEEEEEcCCCCceeeeee
Q 023738 180 PHRYEFRLRITLGPGGDLMLTSRIRNTNTDGKSFAFTF 217 (278)
Q Consensus 180 P~~f~l~~tytL~~~~~L~l~~~V~N~N~gd~p~pf~~ 217 (278)
|+-.++.+=+.|..++++.+..+|.|. .++++.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~--~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNY--TDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE---SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeC--CCCCEEEEE
Confidence 667777777777777889999999888 777776553
No 49
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=20.12 E-value=2.7e+02 Score=20.62 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=25.1
Q ss_pred CcEEEEEEEEEcCCCCceeeee-ecccccccCCCcc
Q 023738 195 GDLMLTSRIRNTNTDGKSFAFT-FAYHTYFAVSDIS 229 (278)
Q Consensus 195 ~~L~l~~~V~N~N~gd~p~pf~-~g~HpYF~v~d~~ 229 (278)
+.+.+.+.|+|+ +..+++.. +-++=||..++..
T Consensus 13 n~i~~~~~i~Nt--g~~~i~Ls~l~iRYyft~d~~~ 46 (86)
T PF00942_consen 13 NSIEPKFKIKNT--GWPAIDLSDLKIRYYFTIDEVS 46 (86)
T ss_dssp SEEEEEEEEEET--SSS-EEGGGEEEEEEEE-SSCC
T ss_pred CEEEEEEEEEEC--CCCCEEcCCEEEEEEEecCCCc
Confidence 678888999887 88888776 8888899887643
Done!