BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023740
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 276 bits (706), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 160/297 (53%), Positives = 208/297 (70%), Gaps = 22/297 (7%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60
MGNQK KWTAEEEEALLAGV KHGPGKWKNILRDP+ A L+ RSNIDLKDKWRNLSV+
Sbjct: 1 MGNQKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLSVAP 60
Query: 61 AQQGSKDKIRGPKLK-----------TTVVAPLSNTPNSAPAASLTRNVSSGAVMNDTST 109
QGSKDKIR PK+K +V P +++ +S+P A+L R+ SS ++D+
Sbjct: 61 GIQGSKDKIRTPKIKAAAFHLAAAAAAAIVTP-THSGHSSPVATLPRSGSSDLSIDDSFN 119
Query: 110 SALDGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVS 169
D KN P+Y+ MIFEA+S L DANGSD+SAI NFIE+RQE PPNFRR+LSSRLRRL +
Sbjct: 120 IVADPKNAPRYDGMIFEALSNLTDANGSDVSAIFNFIEQRQEVPPNFRRMLSSRLRRLAA 179
Query: 170 QGKLEKV------RNCYKIRKETSIGVKTPT---PKQKDARLRPPRNSALMTSREIVEEA 220
QGKLEKV +N YK+ + S+ +TP PK+ + + R NS + + + EA
Sbjct: 180 QGKLEKVSHLKSTQNFYKMN-DNSLVQRTPHVARPKESNTKSRQQTNSQGPSISQQIVEA 238
Query: 221 SITAAYRIAEAENKSFLAAEAFKEAERVSKMAEDTDAMLQLVKEIYERCSRGEIVLL 277
SITAAY++ E ENK ++ A +E ER+ K+AE+ D ML + +E++E CS+G+I+ L
Sbjct: 239 SITAAYKLVEVENKLDVSKGAAEEIERLMKLAEEADEMLVIAREMHEECSQGKIMYL 295
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 263 bits (671), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/288 (49%), Positives = 183/288 (63%), Gaps = 11/288 (3%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60
MGNQK KWTAEEEEALLAG+ KHGPGKWKNILRDP+FA L RSNIDLKDKWRNLSV
Sbjct: 1 MGNQKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPP 60
Query: 61 AQQGSKDKIRGPKLKTTVVAPLSNTPNSAPAASLTRNVSSGAVMNDTSTSAL----DGKN 116
Q +K R K+K P ++ N A T S L + KN
Sbjct: 61 GTQSLTNKARPAKVKEEGDTPAADA-NDAVTIPRPIPTIPPPPGRRTLPSELIPDENTKN 119
Query: 117 GPKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKV 176
P+Y+ +IFEA+S L D NGSD+S+I +FIE R E PPNFRR+LS+RLRRL +Q KLEKV
Sbjct: 120 APRYDGVIFEALSALADGNGSDVSSIYHFIEPRHEVPPNFRRILSTRLRRLAAQSKLEKV 179
Query: 177 ------RNCYKIRKETSIGVKTPTPKQKDARLRPPRNSALMTSREIVEEASITAAYRIAE 230
+N YKI + + P PK+ +LR N S++++EEA+ITAA ++ E
Sbjct: 180 STFKSIQNFYKIPDPSGTKIGVPKPKETHTKLRQANNQTSADSQQMIEEAAITAACKVVE 239
Query: 231 AENKSFLAAEAFKEAERVSKMAEDTDAMLQLVKEIYERCSRGEIVLLA 278
AENK +A A +E E+++K+AE+ +L + E++E CS GE +LLA
Sbjct: 240 AENKIDVAKLAAEEFEKMTKIAEENRKLLVIATEMHELCSCGETMLLA 287
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 147 bits (371), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 118/195 (60%), Gaps = 13/195 (6%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60
MG KQKWT EEE AL +GV KHGPGKW+ IL+DP+F+ L RSN+DLKDKWRN+SV
Sbjct: 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60
Query: 61 AQQGSKDKIRGPKLKTTVVAPLSNTPNSAPAASLTRNVSSGAVMNDTSTSALDGKNGP-- 118
GS++K R +K T P + A SL + N +TS L + P
Sbjct: 61 NGWGSREKSR-LAVKRTFSLPKQEENSLALTNSLQSDEE-----NVDATSGLQVSSNPPP 114
Query: 119 -----KYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKL 173
+ +++I EAI+TLK+ G + + I +IE++ APP+F+RLLS++L+ L S GKL
Sbjct: 115 RRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKL 174
Query: 174 EKVRNCYKIRKETSI 188
KV+ Y+I T +
Sbjct: 175 VKVKRKYRIPNSTPL 189
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 110/197 (55%), Gaps = 25/197 (12%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60
MG KQKWT EEE AL AGV KHG GKW+ IL D +F+ L RSN+DLKDKWRN+SV+
Sbjct: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVT- 59
Query: 61 AQQGSKDKIRGPKLKT-------------TVVAPLSNTPNSAPAASLTRNVSSG--AVMN 105
A GS+ K + +T T+VA L+N A S + +
Sbjct: 60 ALWGSRKKAKLALKRTPPGTKQDDNNTALTIVA-LTNDDERAKPTSPGGSGGGSPRTCAS 118
Query: 106 DTSTSALDGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLR 165
S ++LD +IFEAI+ L++ GSD ++I +IEE + PPN +R ++ RL+
Sbjct: 119 KRSITSLD--------KIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLK 170
Query: 166 RLVSQGKLEKVRNCYKI 182
L S G L K+++ Y+
Sbjct: 171 HLSSNGTLVKIKHKYRF 187
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 107/190 (56%), Gaps = 13/190 (6%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60
MG K KWT EEE AL AGV KHG GKW+ IL DP ++ L RSN+DLKDKWRN+SV+
Sbjct: 1 MGAPKLKWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNISVT- 59
Query: 61 AQQGSKDKIRGPKLKTTVVAPLSNTPNSAPAASLT----RNVSSGAVMNDTSTSALDGKN 116
A GS+ K + LK T PLS + A ++T N G D +
Sbjct: 60 ALWGSRKKAK-LALKRT---PLSGSRQDDNATAITIVSLANGDVGGQQIDAPSPPAGSCE 115
Query: 117 GPK----YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGK 172
P+ + +I EAI++LK G D +I +IEE + P+ +RL++SRL+ L + G
Sbjct: 116 PPRPSTSVDKIILEAITSLKRPFGPDGKSILMYIEENFKMQPDMKRLVTSRLKYLTNVGT 175
Query: 173 LEKVRNCYKI 182
L K ++ Y+I
Sbjct: 176 LVKKKHKYRI 185
>sp|P23444|H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2
Length = 246
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEA--PPNFRRLLSSRLRRLVSQGKLEKVR 177
Y M+ EAI++LK+ GS AIA F+E++ +A PPNFR+LL+ +L++LV+ GKL KV+
Sbjct: 53 YAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVK 112
Query: 178 NCYKIRKET 186
N YK+ T
Sbjct: 113 NSYKLSSAT 121
>sp|P27806|H1_WHEAT Histone H1 OS=Triticum aestivum PE=2 SV=2
Length = 238
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEA--PPNFRRLLSSRLRRLVSQGKLEK 175
P Y M+ EAI+ LK+ +GS AI FIE++ +A P NFR++L +++++LV+ GKL K
Sbjct: 56 PSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTK 115
Query: 176 VRNCYKIRK 184
V+ YK+ K
Sbjct: 116 VKGSYKLAK 124
>sp|P26569|H12_ARATH Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1
Length = 273
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA-PPNFRRLLSSRLRRLVSQGKLE 174
+ P Y MI +AI TLK+ GS AI FIEE+ ++ PP FR+LL L+RLV+ KL
Sbjct: 61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120
Query: 175 KVRNCYKI 182
KV+ +KI
Sbjct: 121 KVKASFKI 128
>sp|P08283|H1_PEA Histone H1 OS=Pisum sativum PE=2 SV=1
Length = 265
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQ-EAPPNFRRLLSSRLRRLVSQGKLEKV 176
P Y MI +AI +LK+ NGS AIA FIEE+Q + P NF++LL L++ V+ GKL KV
Sbjct: 63 PTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKV 122
Query: 177 RNCYKI 182
+ +K+
Sbjct: 123 KGSFKL 128
>sp|P26568|H11_ARATH Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1
Length = 274
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEE-RQEAPPNFRRLLSSRLRRLVSQGKLE 174
+ P Y MI +AI TLK+ GS AI FIEE R+E PP FR+LL L+RLV+ GKL
Sbjct: 61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120
Query: 175 KVRNCYKI 182
KV+ +K+
Sbjct: 121 KVKASFKL 128
>sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum PE=3 SV=1
Length = 287
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEA-PPNFRRLLSSRLRRLVSQGKLEKV 176
P Y MI +AI TLK+ GS AI FIEE+Q++ P NF++LL ++L++ V+ KL KV
Sbjct: 57 PPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKV 116
Query: 177 RNCYKI 182
+N YK+
Sbjct: 117 KNSYKL 122
>sp|Q08864|H11_VOLCA Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3
Length = 261
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQE---APPNFRRLLSSRLRRLVSQGKLE 174
P Y M+ +AI+TLK+ NGS + A+ FIE + NF + LS ++ V GKL
Sbjct: 60 PPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLV 119
Query: 175 KVRNCYKIRKETSIGVKTPTPK--QKDARLRPPRNSALMTSREIVEE 219
KV+ +K+ + K TPK + D +P ++ A E V++
Sbjct: 120 KVKGSFKLSEALKAKAKKSTPKKAKADGEAKPKKSEAKPKKAEAVKK 166
>sp|P54671|H1_DICDI Histone H1 OS=Dictyostelium discoideum GN=H1 PE=1 SV=3
Length = 180
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE-APPNFRRLLSSRLRRLVSQGKLE 174
N P Y MI AI+ KD GS AI +IE AP F+ L L+RLV++G L
Sbjct: 23 NHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLT 82
Query: 175 KVRNCYKIRKE 185
V+ YK+ +E
Sbjct: 83 MVKASYKLSEE 93
>sp|P40267|H1_SOLPN Histone H1 OS=Solanum pennellii PE=2 SV=1
Length = 202
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQ--EAPPNFRRLLSSRLRRLVSQGKLEK 175
P Y MI EA+ L + GS A+A ++E++ E P NFR++L +L+ ++GKL K
Sbjct: 50 PPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIK 109
Query: 176 VRNCYKI 182
++ YK+
Sbjct: 110 IKASYKL 116
>sp|Q9M5W4|H1_EUPES Histone H1 OS=Euphorbia esula PE=2 SV=1
Length = 229
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQ-EAPPNFRRLLSSRLRRLVSQGKLEKV 176
P + MI +AISTLK+ GS AI F+E++ + P NFR+LL L++LV+ GKL KV
Sbjct: 52 PSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKV 111
Query: 177 RNCYK 181
+N +K
Sbjct: 112 KNSFK 116
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
G++KQKWT +E E + GV K+G G+WK I F R+++ +KD++R +
Sbjct: 662 GSKKQKWTVQESEWIKDGVRKYGEGRWKTISEKYPF----QNRTSVQIKDRYRTM 712
>sp|Q08865|H12_VOLCA Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3
Length = 241
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPN---FRRLLSSRLRRLVSQGKLE 174
P Y M+ +AI +LK+ +GS + A+ FIE + + F + LS L+ V GKL
Sbjct: 26 PPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLV 85
Query: 175 KVRNCYKI 182
KV+N YK+
Sbjct: 86 KVKNSYKL 93
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 7 KWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
KWT +E LL G HG G WK IL D +F T RS DLKD++R +
Sbjct: 57 KWTEKETNDLLRGCQIHGVGNWKKILLDERFH--FTNRSPNDLKDRFRTI 104
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRN 55
+++++T EE+E LL G HGP W I +D L R + DL+D++RN
Sbjct: 139 ERKQFTPEEDERLLEGFFLHGPC-WTRISKDANLG--LQNRRSTDLRDRFRN 187
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
+KQKWT EE E + AGV K+G G W I ++ F R+ + +KD+WR +
Sbjct: 446 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPF----VNRTAVMIKDRWRTM 494
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
++Q W EE+ L GV K+G G W IL +F R+++ LKD+WR +
Sbjct: 366 KRQTWLWEEDRILKCGVKKYGEGNWAKILSHYKF----NNRTSVMLKDRWRTM 414
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
++Q W EE++ L +GV K+G G W IL +F R+++ LKD+WR +
Sbjct: 379 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF----NNRTSVMLKDRWRTM 427
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
++Q W EE++ L +GV K+G G W IL +F R+++ LKD+WR +
Sbjct: 379 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKF----NNRTSVMLKDRWRTM 427
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
+KQKWT EE E + GV K+G G W I + F R+ + +KD+WR +
Sbjct: 487 RKQKWTIEESEWVKDGVRKYGEGNWAAISKSYPF----VNRTAVMIKDRWRTM 535
>sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1
Length = 213
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKL 173
P Y M+ +AI+ LK+ NGS AI FI+ + NF + LRR V +G+
Sbjct: 28 PSYKEMLTKAITELKERNGSSRQAIKKFIQSNFKVKDNFDVQFNQALRRGVEKGEF 83
>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2
Length = 743
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKW 53
K KWT EE+E L A V KHG G+WK I A +L R+ + +W
Sbjct: 31 KVKWTPEEDETLKALVKKHGQGEWKTI------ASNLNNRTEQQCQHRW 73
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDP 35
N WT EE+E LL GV K+G G W I DP
Sbjct: 1170 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 1202
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 8 WTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQGSKD 67
WT EE + L G+ K+G G W+NI R+ + TQ ++ K R LS G KD
Sbjct: 134 WTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLS------GGKD 187
Query: 68 KIRGPKLKTTVV--------APLSNTPNSAPAASLTRNVSS 100
K R T V +P + P S+P S+ + +S
Sbjct: 188 KRRASIHDITTVNLSDNQTPSPDNKKPPSSPDHSMAQQQTS 228
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNI-LRDPQFAPSLTQRSNIDLKDKWRNL 56
++ ++ E EAL++ V + G G+W+++ LR + A + R+ +DLKDKW+ L
Sbjct: 535 RRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENA---SHRTYVDLKDKWKTL 584
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
++ +T E EAL+ V + G G+W+++ + F + R+ +DLKDKW+ L
Sbjct: 315 RRPFTVSEVEALVQAVERLGTGRWRDV-KSHAFN-HVNHRTYVDLKDKWKTL 364
>sp|Q02457|TBF1_YEAST Protein TBF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TBF1 PE=1 SV=2
Length = 562
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAP------SLTQRSNIDLKDKWRNLSV 58
K+ W+ EEEEAL+ G+ + GP W IL + P +L R+ + LKDK RN +
Sbjct: 409 KRTWSKEEEEALVEGLKEVGPS-WSKILD--LYGPGGKITENLKNRTQVQLKDKARNWKL 465
Query: 59 SNAQQG 64
+ G
Sbjct: 466 QYLKSG 471
>sp|Q6E434|TRF1_SCHPO Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1
Length = 485
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPS------LTQRSNIDLKDKWRNLSV 58
++ WT EEEEALL G+ +W IL + P L R+ + LKDK RN+ +
Sbjct: 405 RRSWTKEEEEALLDGLDLVKGPRWSQILE--LYGPGGKKSEVLKYRNQVQLKDKARNMKL 462
Query: 59 SNAQQG 64
+ G
Sbjct: 463 FFLKSG 468
>sp|P22845|H10A_XENLA Histone H1.0-A OS=Xenopus laevis GN=h1f0-a PE=2 SV=3
Length = 194
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 85 TPNSAPAASLTRNVSSGAVMNDTSTSALDGKNGPKYNAMIFEAISTLKDANGSDISAIAN 144
T NSAPAA R S ++ + PKY+ MI +A+ K +GS +I
Sbjct: 2 TENSAPAAKPRR-----------SKASKKSTDHPKYSDMILDAVQAEKSRSGSSRQSIQK 50
Query: 145 FIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNC 179
+I+ N + ++RLV+ G L++ +
Sbjct: 51 YIKNNYTVGENADSQIKLSIKRLVTSGTLKQTKGV 85
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila
melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFA 38
G + + W + LLAG+ HG G+W++I D +FA
Sbjct: 1753 GREYEIWHRRHDYWLLAGIVTHGYGRWQDIQNDIRFA 1789
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNI-LRDPQFAPSLTQRSNIDLKDKWRNL 56
++ ++ E EAL+ V K G G+W+++ +R + A R+ +DLKDKW+ L
Sbjct: 453 RRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDA---DHRTYVDLKDKWKTL 502
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNI-LRDPQFAPSLTQRSNIDLKDKWRNL 56
++ ++ E EAL+ V + G G+W+++ LR + A R+ +DLKDKW+ L
Sbjct: 509 RRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDA---DHRTYVDLKDKWKTL 558
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 8 WTAEEEEALLAGVAKHGPGKWKNILRDPQFA 38
W +E+ LLAG+ KHG G W+ I DP
Sbjct: 1132 WGIKEDSMLLAGINKHGFGCWQAIKNDPDLG 1162
>sp|Q00423|HMGYA_SOYBN HMG-Y-related protein A OS=Glycine max PE=2 SV=1
Length = 176
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177
P Y MI + + L + NGS+ SAI+ +IE P+ +L S L ++ G+L +
Sbjct: 13 PPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA-TVLGSHLNKMKDSGELSFKQ 71
Query: 178 NCY 180
N Y
Sbjct: 72 NNY 74
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 8 WTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNL 56
++ E EAL+ V K G G+W+++ + F + R+ +DLKDKW+ L
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDV-KLCAFEDA-DHRTYVDLKDKWKTL 517
>sp|Q9FLR1|MYB29_ARATH Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1
SV=1
Length = 336
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNI 31
G +K WTAEE++ L++ + +HG G W++I
Sbjct: 11 GLKKGAWTAEEDKKLISYIHEHGEGGWRDI 40
>sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hrp3 PE=1 SV=1
Length = 1388
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 7 KWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKD 51
+W E+ LL+G+ KHG G W I DP+ L + I L+D
Sbjct: 1122 QWGPREDSMLLSGICKHGFGAWLEIRDDPE----LKMKDKIFLED 1162
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAP--SLTQRSNIDLKDKWRNL 56
++ +T E E L+ V G G+W RD +F ++ R+ +DLKDKW+ L
Sbjct: 534 RRPFTVAEVELLVEAVEHLGTGRW----RDVKFRAFENVHHRTYVDLKDKWKTL 583
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNI-LRDPQFAPSLTQRSNIDLKDKWRNL 56
++ ++ E EAL+ V + G G+W+++ LR A R+ +DLKDKW+ L
Sbjct: 528 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNA---KHRTYVDLKDKWKTL 577
>sp|P10290|MYBC_MAIZE Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
Length = 273
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61
G ++ WT++E++AL A V HG GKW+ + PQ A +R + +W N N
Sbjct: 11 GVKRGAWTSKEDDALAAYVKAHGEGKWREV---PQKAG--LRRCGKSCRLRWLNYLRPNI 65
Query: 62 QQGS 65
++G+
Sbjct: 66 RRGN 69
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 5 KQKWTAEEEEALLAGVAKHGPGKWKNI 31
KQ WT EE L G+ HG G WK I
Sbjct: 376 KQGWTKEEHIRFLNGIQIHGKGAWKEI 402
>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
Length = 316
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNI 31
+G +K WT EE+ L++ + +HGPG W+ I
Sbjct: 10 IGVKKGPWTPEEDIILVSYIQEHGPGNWRAI 40
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4
PE=1 SV=2
Length = 1912
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 8 WTAEEEEALLAGVAKHGPGKWKNILRDPQFA 38
W + LLAG+ HG +W++I DP++A
Sbjct: 1729 WHRRHDYWLLAGIINHGYARWQDIQNDPRYA 1759
>sp|P15870|H1D_STRPU Histone H1-delta OS=Strongylocentrotus purpuratus PE=3 SV=1
Length = 185
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177
PKY+ MI A+ +LK+ GS AI +++ N + L+R V+ G+L V+
Sbjct: 34 PKYSDMIASALESLKEKKGSSRQAILKYVKANFTVGDNANVHIKQALKRGVTSGQLRHVK 93
Query: 178 N 178
Sbjct: 94 G 94
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4
PE=1 SV=1
Length = 1915
Score = 35.0 bits (79), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 8 WTAEEEEALLAGVAKHGPGKWKNILRDPQFA 38
W + LLAG+ HG +W++I DP++A
Sbjct: 1732 WHRRHDYWLLAGIINHGYARWQDIQNDPRYA 1762
>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4
PE=2 SV=2
Length = 257
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 1 MGNQKQKWTAEEEEALLAGVAKHGPGKWKNI 31
MG +K WT EE++ L+A + +HG G W+ +
Sbjct: 10 MGLKKGPWTPEEDKVLVAHIQRHGHGNWRAL 40
>sp|P82898|H1A_OLILU Histone H1A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1
Length = 47
Score = 34.7 bits (78), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQEA 152
P Y M+ +AI LKD NGS + AI +IE Q+
Sbjct: 1 PTYYDMVKDAIVALKDRNGSSMQAIKKYIEANQKV 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,902,493
Number of Sequences: 539616
Number of extensions: 3683323
Number of successful extensions: 10443
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 10298
Number of HSP's gapped (non-prelim): 213
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)