Query 023740
Match_columns 278
No_of_seqs 286 out of 918
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hst_A Histone H5; chromosomal 99.9 6.8E-23 2.3E-27 160.9 8.1 74 113-186 3-81 (90)
2 1uss_A Histone H1; DNA binding 99.9 1E-22 3.5E-27 159.0 8.8 74 113-186 3-83 (88)
3 1uhm_A Histone H1, histone HHO 99.9 1.1E-22 3.8E-27 155.3 7.4 70 115-184 2-77 (78)
4 1ust_A Histone H1; DNA binding 99.9 5.2E-22 1.8E-26 156.7 6.3 73 113-185 3-81 (93)
5 2rqp_A Heterochromatin protein 99.8 4.6E-22 1.6E-26 155.1 2.7 74 113-186 5-85 (88)
6 1ghc_A GH1; chromosomal protei 99.8 1.1E-20 3.9E-25 142.6 0.8 67 116-183 2-74 (75)
7 2lso_A Histone H1X; structural 99.6 6.9E-20 2.4E-24 141.7 0.0 68 118-185 6-79 (83)
8 1x58_A Hypothetical protein 49 99.8 8.6E-19 2.9E-23 128.9 5.7 54 3-60 6-59 (62)
9 2aje_A Telomere repeat-binding 99.7 2.3E-18 7.8E-23 138.8 7.7 59 2-62 10-68 (105)
10 2ckx_A NGTRF1, telomere bindin 99.7 4.5E-18 1.5E-22 131.7 4.5 55 6-62 1-55 (83)
11 3sjm_A Telomeric repeat-bindin 99.7 8.4E-18 2.9E-22 124.0 5.4 54 3-60 9-62 (64)
12 2roh_A RTBP1, telomere binding 99.7 6E-18 2.1E-22 139.6 5.2 59 2-62 28-86 (122)
13 2juh_A Telomere binding protei 99.7 9E-18 3.1E-22 138.3 4.6 59 2-62 14-72 (121)
14 1w0t_A Telomeric repeat bindin 99.6 2.4E-16 8.3E-21 111.2 5.2 52 4-59 1-52 (53)
15 1ity_A TRF1; helix-turn-helix, 99.6 1.4E-15 4.9E-20 112.7 6.3 56 2-61 7-62 (69)
16 1guu_A C-MYB, MYB proto-oncoge 99.5 1.1E-14 3.6E-19 102.0 5.7 50 4-59 2-51 (52)
17 1gvd_A MYB proto-oncogene prot 99.5 2.5E-14 8.5E-19 100.3 5.9 50 4-59 2-51 (52)
18 2d9a_A B-MYB, MYB-related prot 99.5 2.7E-14 9.4E-19 102.8 5.4 54 2-61 5-58 (60)
19 2dim_A Cell division cycle 5-l 99.4 1.2E-13 4.1E-18 102.4 6.1 54 2-61 6-59 (70)
20 1x41_A Transcriptional adaptor 99.4 1.7E-13 6E-18 99.0 4.9 53 2-60 5-57 (60)
21 2elk_A SPCC24B10.08C protein; 99.4 2.8E-13 9.6E-18 97.5 4.3 48 4-57 8-56 (58)
22 1gv2_A C-MYB, MYB proto-oncoge 99.3 5.9E-12 2E-16 99.3 6.7 51 3-59 2-52 (105)
23 2yum_A ZZZ3 protein, zinc fing 99.3 3.6E-12 1.2E-16 95.4 4.9 53 3-61 6-63 (75)
24 2k9n_A MYB24; R2R3 domain, DNA 99.2 5.5E-12 1.9E-16 100.3 5.6 85 5-149 1-85 (107)
25 2cu7_A KIAA1915 protein; nucle 99.2 4.8E-12 1.7E-16 94.4 4.8 52 3-61 7-58 (72)
26 3zqc_A MYB3; transcription-DNA 99.2 1E-11 3.5E-16 102.1 6.9 49 5-59 2-50 (131)
27 2llk_A Cyclin-D-binding MYB-li 99.2 6.5E-12 2.2E-16 95.0 4.5 49 3-59 21-69 (73)
28 3osg_A MYB21; transcription-DN 99.2 1.4E-11 4.7E-16 100.8 6.3 51 2-59 8-58 (126)
29 2din_A Cell division cycle 5-l 99.2 6.1E-12 2.1E-16 92.2 3.7 53 3-63 7-59 (66)
30 1h8a_C AMV V-MYB, MYB transfor 99.2 1.9E-11 6.5E-16 99.8 5.9 51 3-59 25-75 (128)
31 2yus_A SWI/SNF-related matrix- 99.1 2.3E-11 7.9E-16 93.0 3.6 47 4-57 17-63 (79)
32 3zqc_A MYB3; transcription-DNA 99.1 1.2E-10 4.3E-15 95.5 8.0 61 3-70 52-112 (131)
33 1gv2_A C-MYB, MYB proto-oncoge 99.1 1.1E-10 3.9E-15 91.9 6.1 50 3-59 54-103 (105)
34 1h89_C C-MYB, MYB proto-oncoge 99.1 2E-11 7E-16 102.9 1.4 53 1-59 1-54 (159)
35 3osg_A MYB21; transcription-DN 99.0 1.6E-10 5.5E-15 94.4 5.7 52 3-61 60-111 (126)
36 2k9n_A MYB24; R2R3 domain, DNA 99.0 1.5E-10 5E-15 92.0 4.3 51 3-60 51-101 (107)
37 2cqr_A RSGI RUH-043, DNAJ homo 99.0 2E-10 6.8E-15 86.7 4.6 51 4-60 17-70 (73)
38 1h89_C C-MYB, MYB proto-oncoge 99.0 3.6E-10 1.2E-14 95.3 6.6 51 3-59 56-106 (159)
39 1h8a_C AMV V-MYB, MYB transfor 99.0 4.1E-10 1.4E-14 91.9 5.9 50 3-59 77-126 (128)
40 2ltp_A Nuclear receptor corepr 98.5 5.1E-11 1.7E-15 92.6 0.0 52 3-61 14-65 (89)
41 2cjj_A Radialis; plant develop 98.8 4E-09 1.4E-13 83.0 4.2 51 4-60 7-60 (93)
42 1ign_A Protein (RAP1); RAP1,ye 98.7 1E-08 3.6E-13 92.9 5.2 53 3-61 6-63 (246)
43 2eqr_A N-COR1, N-COR, nuclear 98.4 2.7E-07 9.2E-12 66.7 5.4 49 4-59 11-59 (61)
44 2cqq_A RSGI RUH-037, DNAJ homo 98.4 2.5E-07 8.7E-12 69.4 3.8 51 3-60 6-59 (72)
45 3hm5_A DNA methyltransferase 1 98.1 3.3E-06 1.1E-10 66.5 4.9 53 6-60 31-83 (93)
46 1wgx_A KIAA1903 protein; MYB D 98.0 1E-05 3.6E-10 61.0 5.6 49 5-59 8-59 (73)
47 2iw5_B Protein corest, REST co 97.9 8.1E-06 2.8E-10 73.6 4.6 51 3-60 131-181 (235)
48 4b4c_A Chromodomain-helicase-D 97.9 1.8E-05 6.3E-10 68.7 6.7 55 5-59 134-196 (211)
49 1fex_A TRF2-interacting telome 97.8 2.1E-05 7E-10 56.8 4.2 49 5-58 2-58 (59)
50 2xb0_X Chromo domain-containin 97.4 7.4E-05 2.5E-09 68.8 3.5 32 7-38 170-201 (270)
51 4iej_A DNA methyltransferase 1 97.3 0.00027 9.2E-09 55.6 4.9 51 6-58 31-81 (93)
52 2yqk_A Arginine-glutamic acid 97.3 0.00056 1.9E-08 49.6 6.1 50 4-59 8-57 (63)
53 2crg_A Metastasis associated p 97.1 0.0013 4.5E-08 48.7 7.1 53 3-61 6-58 (70)
54 1ofc_X ISWI protein; nuclear p 97.1 0.00024 8.2E-09 66.4 3.1 58 3-60 210-276 (304)
55 4eef_G F-HB80.4, designed hema 96.9 0.00039 1.3E-08 52.5 2.1 43 6-54 21-66 (74)
56 2ebi_A DNA binding protein GT- 96.9 0.00019 6.4E-09 54.5 0.4 55 4-60 3-66 (86)
57 2xag_B REST corepressor 1; ami 96.6 0.0014 4.9E-08 64.6 4.6 49 4-59 379-427 (482)
58 4a69_C Nuclear receptor corepr 96.4 0.0048 1.7E-07 48.1 5.5 47 5-58 43-89 (94)
59 2y9y_A Imitation switch protei 96.0 0.003 1E-07 60.5 3.1 57 4-60 227-292 (374)
60 1ug2_A 2610100B20RIK gene prod 94.9 0.028 9.5E-07 44.1 4.4 55 2-62 30-86 (95)
61 2c6y_A Forkhead box protein K2 94.7 0.11 3.7E-06 41.9 7.7 60 113-176 14-77 (111)
62 2a07_F Forkhead box protein P2 94.4 0.11 3.7E-06 40.5 6.8 58 115-176 3-64 (93)
63 2lr8_A CAsp8-associated protei 93.1 0.009 3.1E-07 44.5 0.0 52 3-61 12-65 (70)
64 1irz_A ARR10-B; helix-turn-hel 93.8 0.1 3.4E-06 38.2 5.2 49 2-54 4-54 (64)
65 1vtn_C HNF-3/FORK head DNA-rec 93.5 0.16 5.3E-06 40.3 6.2 58 115-176 3-64 (102)
66 1ign_A Protein (RAP1); RAP1,ye 93.4 0.059 2E-06 48.9 4.1 50 5-60 94-200 (246)
67 2hfh_A Genesis, HFH-2; HNF-3 h 93.3 0.23 7.8E-06 39.8 7.0 50 115-165 3-56 (109)
68 4b4c_A Chromodomain-helicase-D 93.3 0.069 2.4E-06 45.9 4.2 50 4-57 6-57 (211)
69 3g73_A Forkhead box protein M1 92.9 0.22 7.4E-06 41.7 6.5 64 109-176 12-80 (142)
70 2hdc_A Protein (transcription 92.8 0.18 6.2E-06 39.5 5.6 49 116-165 3-55 (97)
71 3l2c_A Forkhead box protein O4 91.8 0.46 1.6E-05 38.0 6.9 60 114-177 23-91 (110)
72 1kq8_A HFH-1, hepatocyte nucle 91.7 0.21 7.3E-06 39.3 4.7 57 116-176 3-63 (100)
73 3bpy_A FORK head domain, forkh 91.2 0.63 2.2E-05 35.5 6.8 59 115-177 5-72 (85)
74 3coa_C Forkhead box protein O1 89.7 0.84 2.9E-05 36.9 6.7 59 115-177 11-78 (117)
75 2xb0_X Chromo domain-containin 86.6 1 3.4E-05 41.2 5.9 52 4-59 2-55 (270)
76 1e17_A AFX; DNA binding domain 83.5 1.5 5.1E-05 37.0 5.1 59 115-177 40-107 (150)
77 2xag_B REST corepressor 1; ami 77.7 0.46 1.6E-05 46.9 0.0 43 6-55 190-232 (482)
78 1ofc_X ISWI protein; nuclear p 73.3 4.2 0.00014 37.8 5.3 47 6-58 111-157 (304)
79 1qgp_A Protein (double strande 67.4 8.2 0.00028 28.1 4.8 58 120-184 15-75 (77)
80 1r7j_A Conserved hypothetical 61.2 15 0.00051 27.7 5.4 57 119-184 5-61 (95)
81 2kpm_A Uncharacterized protein 59.7 11 0.00039 29.7 4.5 33 118-150 20-53 (105)
82 1sfu_A 34L protein; protein/Z- 58.4 14 0.00048 27.6 4.6 51 121-178 14-64 (75)
83 1psm_A SPAM-H1; polymorphic an 53.0 0.98 3.3E-05 29.5 -2.2 24 230-253 12-35 (38)
84 1qbj_A Protein (double-strande 52.3 33 0.0011 25.3 5.8 58 121-185 12-72 (81)
85 2lnb_A Z-DNA-binding protein 1 48.6 30 0.001 26.2 5.0 55 120-183 20-75 (80)
86 1y0u_A Arsenical resistance op 44.8 32 0.0011 25.0 4.8 29 157-185 57-85 (96)
87 3fbl_A Putative uncharacterize 43.7 20 0.0007 26.3 3.3 28 123-150 52-82 (82)
88 2kzv_A Uncharacterized protein 41.2 31 0.0011 26.3 4.2 47 119-165 8-58 (92)
89 2heo_A Z-DNA binding protein 1 38.1 49 0.0017 23.0 4.7 55 120-183 11-66 (67)
90 1tbx_A ORF F-93, hypothetical 38.0 86 0.0029 22.5 6.2 51 121-177 10-60 (99)
91 1ldd_A APC2WHB, anaphase promo 37.3 20 0.00068 26.6 2.5 26 158-183 48-74 (74)
92 1p6r_A Penicillinase repressor 33.8 1.1E+02 0.0036 21.4 6.0 52 120-177 10-61 (82)
93 1uxc_A FRUR (1-57), fructose r 32.7 25 0.00087 24.7 2.4 40 128-167 3-45 (65)
94 2x4h_A Hypothetical protein SS 32.3 62 0.0021 24.6 4.8 56 121-183 15-71 (139)
95 1k4u_P Phagocyte NADPH oxidase 32.0 14 0.00047 23.4 0.7 10 262-271 13-22 (32)
96 3jth_A Transcription activator 29.7 80 0.0027 22.7 4.8 41 129-177 30-70 (98)
97 3cuo_A Uncharacterized HTH-typ 28.6 68 0.0023 22.6 4.2 39 132-177 34-72 (99)
98 2fu4_A Ferric uptake regulatio 25.8 1.5E+02 0.0052 20.5 5.6 52 121-177 19-72 (83)
99 1oyi_A Double-stranded RNA-bin 25.8 54 0.0018 24.6 3.2 49 122-178 17-65 (82)
100 1mkm_A ICLR transcriptional re 25.2 90 0.0031 26.7 5.1 53 124-185 13-66 (249)
101 2jt1_A PEFI protein; solution 24.8 1.7E+02 0.0057 21.3 5.7 22 158-179 39-60 (77)
102 2juh_A Telomere binding protei 23.4 32 0.0011 27.7 1.6 24 7-31 81-104 (121)
103 2hzd_A Transcriptional enhance 20.6 54 0.0019 24.8 2.3 30 3-32 4-34 (82)
104 2v9v_A Selenocysteine-specific 20.3 1.9E+02 0.0066 21.9 5.6 61 119-184 63-130 (135)
No 1
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.88 E-value=6.8e-23 Score=160.87 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecc-----ccccCCCC
Q 023740 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIRKET 186 (278)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~-----sykl~~~~ 186 (278)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|+++++|+.+|+.+|++||++|.|+|++| +|||++..
T Consensus 3 ~~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 3 RSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp ---CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 356899999999999999999999999999999999999977899999999999999999999998 99998654
No 2
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.88 E-value=1e-22 Score=159.01 Aligned_cols=74 Identities=22% Similarity=0.469 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC----CcchHHHHHHHHHhhhhcCceeeecc---ccccCCC
Q 023740 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA----PPNFRRLLSSRLRRLVSQGKLEKVRN---CYKIRKE 185 (278)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v----~~n~~~~L~~~LKrlV~sGkLvkvK~---sykl~~~ 185 (278)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|.+ |++|+.+|+.+|++||++|.|+|++| +|||++.
T Consensus 3 ~~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k 82 (88)
T 1uss_A 3 SSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKK 82 (88)
T ss_dssp TCCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCS
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCcc
Confidence 3567999999999999999999999999999999999965 58999999999999999999999998 9999864
Q ss_pred C
Q 023740 186 T 186 (278)
Q Consensus 186 ~ 186 (278)
.
T Consensus 83 ~ 83 (88)
T 1uss_A 83 K 83 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.87 E-value=1.1e-22 Score=155.32 Aligned_cols=70 Identities=26% Similarity=0.498 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC--C-cchHHHHHHHHHhhhhcCceeeec---cccccCC
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA--P-PNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRK 184 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--~-~n~~~~L~~~LKrlV~sGkLvkvK---~sykl~~ 184 (278)
.+||+|.+||+|||.+|+||+|||++||++||+++|.+ | ++|+.+|+.+|+++|++|+|+|+| |+|||++
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 47999999999999999999999999999999999975 5 799999999999999999999976 5999975
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.85 E-value=5.2e-22 Score=156.70 Aligned_cols=73 Identities=25% Similarity=0.492 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCC--C-cchHHHHHHHHHhhhhcCceeeec---cccccCCC
Q 023740 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQEA--P-PNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRKE 185 (278)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--~-~n~~~~L~~~LKrlV~sGkLvkvK---~sykl~~~ 185 (278)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|.+ | ++|+.+|+.+|++||++|.|+|++ |+|||++.
T Consensus 3 k~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k 81 (93)
T 1ust_A 3 EEASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKK 81 (93)
T ss_dssp CSSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSC
T ss_pred CCCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCC
Confidence 3567999999999999999999999999999999999964 6 799999999999999999999976 69999864
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.84 E-value=4.6e-22 Score=155.09 Aligned_cols=74 Identities=22% Similarity=0.382 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-C-CcchHHHHHHHHHhhhhcCceeeecc-----ccccCCC
Q 023740 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE-A-PPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIRKE 185 (278)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v-~~n~~~~L~~~LKrlV~sGkLvkvK~-----sykl~~~ 185 (278)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|. + +++|+.+|+.+|+++|++|.|+|++| +|||++.
T Consensus 5 ~~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 5 ASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 356899999999999999999999999999999999997 4 57899999999999999999999998 9999865
Q ss_pred C
Q 023740 186 T 186 (278)
Q Consensus 186 ~ 186 (278)
.
T Consensus 85 ~ 85 (88)
T 2rqp_A 85 S 85 (88)
T ss_dssp T
T ss_pred c
Confidence 3
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.79 E-value=1.1e-20 Score=142.64 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHh-cCCCcchHHHHHHHHHhhhhcCceeeecc-----ccccC
Q 023740 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEER-QEAPPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIR 183 (278)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~-y~v~~n~~~~L~~~LKrlV~sGkLvkvK~-----sykl~ 183 (278)
+||+|.+||+|||.+|+||+|||++||++||+++ |.++ +++.+|+.+|+++|++|.|+|++| +|||+
T Consensus 2 ~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~~~-~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~ 74 (75)
T 1ghc_A 2 AGPSVTELITKAVSASKERKGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLS 74 (75)
T ss_dssp CSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCCSS-SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSC
T ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCCch-hHHHHHHHHHHHHHhcCCeEeccCCCCccccccC
Confidence 6999999999999999999999999999999999 6664 679999999999999999999998 99986
No 7
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-20 Score=141.72 Aligned_cols=68 Identities=25% Similarity=0.402 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc-CCCcchHHHHHHHHHhhhhcCceeeecc-----ccccCCC
Q 023740 118 PKYNAMIFEAISTLKDANGSDISAIANFIEERQ-EAPPNFRRLLSSRLRRLVSQGKLEKVRN-----CYKIRKE 185 (278)
Q Consensus 118 p~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y-~v~~n~~~~L~~~LKrlV~sGkLvkvK~-----sykl~~~ 185 (278)
++|.+||+|||.+|+||+|||++||++||+++| ..+++|+.+|+.+||++|++|+|+|+|| ||||++.
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k 79 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRK 79 (83)
Confidence 689999999999999999999999999999998 4578999999999999999999999998 9999864
No 8
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=8.6e-19 Score=128.89 Aligned_cols=54 Identities=30% Similarity=0.509 Sum_probs=50.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
+.+++||+|||+.|++||++||. +|+.|+.+|.| |.+||+||||||||||.+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f---~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF---QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC---CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC---ccCcccchHHHHHHHHHhcc
Confidence 68999999999999999999999 99999998755 78999999999999998864
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.74 E-value=2.3e-18 Score=138.77 Aligned_cols=59 Identities=31% Similarity=0.609 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~ 62 (278)
++++++||+|||++|+.||++||.|+|+.|+..+ | .+|++||++|||||||||++....
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-F-EDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-S-SSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhccC
Confidence 4789999999999999999999999999999974 3 357999999999999999998764
No 10
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.71 E-value=4.5e-18 Score=131.67 Aligned_cols=55 Identities=31% Similarity=0.669 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 023740 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (278)
Q Consensus 6 ~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~ 62 (278)
++||+|||+.|+.||++||.|+|+.|++++ | .+|++||++|||||||||++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~-~-~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRA-F-DNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHH-C-TTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhh-c-cccCCCCHHHHHHHHHHHHHhccC
Confidence 589999999999999999999999999975 3 257899999999999999987653
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.70 E-value=8.4e-18 Score=123.96 Aligned_cols=54 Identities=39% Similarity=0.737 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
.+|++||+|||+.|+.+|++||.|+|+.|++.+. |.+||++||+|||+||+++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP----FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC----CCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999999999999743 46999999999999999875
No 12
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=6e-18 Score=139.55 Aligned_cols=59 Identities=29% Similarity=0.620 Sum_probs=52.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~ 62 (278)
++++++||.|||++|++||++||.|+|+.|+..+ |. +|.+||++|||||||||++....
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~~-~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA-FE-NVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHH-HS-SSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHh-cc-ccCCCCHHHHHHHHHHHHhhccC
Confidence 4789999999999999999999999999999964 32 46899999999999999987654
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=9e-18 Score=138.35 Aligned_cols=59 Identities=27% Similarity=0.549 Sum_probs=53.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~ 62 (278)
.+++++||.|||+.|+.||++||.|+|+.|+.++.| .|.+||++|||||||||++....
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~--~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD--NADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS--CCSSCCSHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc--ccCCCCHHHHHHHHHHHHhhhcc
Confidence 478999999999999999999999999999998655 47899999999999999987553
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=2.4e-16 Score=111.24 Aligned_cols=52 Identities=37% Similarity=0.747 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
++++||+|||+.|+.+|++||.|+|..|+.... |.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK----FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999621 2389999999999999874
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=1.4e-15 Score=112.67 Aligned_cols=56 Identities=34% Similarity=0.697 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
.+++++||+|||+.|+.+|++||.|+|..|+.... |.+||++||++||+|++++..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK----FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC----cCCCCHHHHHHHHHHHcCCCC
Confidence 46899999999999999999999999999999621 239999999999999998865
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.52 E-value=1.1e-14 Score=102.04 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
.+++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY------LPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT------STTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH------cCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999999999999994 6799999999999999875
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.50 E-value=2.5e-14 Score=100.25 Aligned_cols=50 Identities=32% Similarity=0.611 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
.+++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.|++.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH------LKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT------STTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHH------cCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999999899999994 6799999999999999875
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=2.7e-14 Score=102.79 Aligned_cols=54 Identities=28% Similarity=0.508 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
+..+++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+..
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH------FPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH------CSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH------ccCCCHHHHHHHHHHHcCCcc
Confidence 357899999999999999999999999999994 679999999999999988753
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=102.40 Aligned_cols=54 Identities=26% Similarity=0.443 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
+.++++||+|||+.|+.+|.+||.++|..|+.. |++||..||++||.+++.+..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL------LHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH------STTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH------hcCCCHHHHHHHHHHHcCCcc
Confidence 357889999999999999999999999999994 679999999999999987654
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=1.7e-13 Score=99.00 Aligned_cols=53 Identities=23% Similarity=0.490 Sum_probs=48.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
...+.+||+|||+.|+++|++||.++|..|+.. +++||..||++||.+++...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~------~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ------MCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH------HTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH------hCCCCHHHHHHHHHHHccCC
Confidence 356889999999999999999999999999994 57999999999999998754
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.37 E-value=2.8e-13 Score=97.48 Aligned_cols=48 Identities=23% Similarity=0.473 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCC-CCCHHHHHHHHHHhc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLT-QRSNIDLKDKWRNLS 57 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~-~RT~vdLKDKWRnl~ 57 (278)
.+.+||+|||+.|+++|++||.++|..|+.. ++ +||..||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~------~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADY------VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH------HCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH------HCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999999999999994 56 899999999999875
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.27 E-value=5.9e-12 Score=99.29 Aligned_cols=51 Identities=29% Similarity=0.565 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
-.+++||+|||+.|+.+|++||.++|..|+.. |++||..||++||++++.+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH------LKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT------STTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh------hcCCCHHHHHHHHHhccCC
Confidence 36899999999999999999999999999983 6899999999999998754
No 23
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.6e-12 Score=95.45 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-----CCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGP-----GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~-----GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
..+++||.|||+.|+++|.+||. ++|..|+.. |.+||..||++||.+++....
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~------~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE------LGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH------HSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH------hCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999996 799999994 679999999999998887644
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.25 E-value=5.5e-12 Score=100.29 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccccCCCcccCCCCCCCCCCCCCCC
Q 023740 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQGSKDKIRGPKLKTTVVAPLSN 84 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~~~~~~k~r~~~~~~~~~~~~~~ 84 (278)
|++||+|||+.|+.+|++||.++|..|+.. +++||+.||++||.|++.+.. ++++-+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~L~p~i------------~~~~WT----- 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL------MITRNPRQCRERWNNYINPAL------------RTDPWS----- 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH------TTTSCHHHHHHHHHHHSSSCC------------TTCCCC-----
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh------cCCCCHHHHHHHHHHHHcccc------------cccccC-----
Confidence 679999999999999999999999999983 679999999999999886532 223322
Q ss_pred CCCCCCcccccccccCCCccCCCCccCCCCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHh
Q 023740 85 TPNSAPAASLTRNVSSGAVMNDTSTSALDGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEER 149 (278)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~ 149 (278)
.. =+.++++++..+ |..-..|++|+..+
T Consensus 58 -----------~e----------------------Ed~~L~~~~~~~----G~~W~~Ia~~l~gR 85 (107)
T 2k9n_A 58 -----------PE----------------------EDMLLDQKYAEY----GPKWNKISKFLKNR 85 (107)
T ss_dssp -----------HH----------------------HHHHHHHHHHHT----CSCHHHHHHHHSSS
T ss_pred -----------HH----------------------HHHHHHHHHHHh----CcCHHHHHHHCCCC
Confidence 00 167788888776 56899999998544
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.25 E-value=4.8e-12 Score=94.39 Aligned_cols=52 Identities=29% Similarity=0.490 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
..+++||.|||+.|+.+|.+||. +|..|+.. |++||..||++||.++++...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~------~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISKL------IGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH------HSSSCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999 99999993 689999999999999987654
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.24 E-value=1e-11 Score=102.06 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
|++||+|||+.|+.+|.+||.++|..|+.. |++||+.||++||+|++.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------~~~Rt~~qcr~Rw~~~l~p 50 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF------LPNRSPKQCRERWFNHLDP 50 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS------CTTSCHHHHHHHHHHHTST
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH------HCCCCHHHHHHHHhhccCc
Confidence 689999999999999999999999999883 6899999999999998865
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=6.5e-12 Score=94.96 Aligned_cols=49 Identities=37% Similarity=0.451 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
..+++||+|||+.|+.+|.+||. +|+.|++. | +||..|||+||+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~------l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGAA------L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH------H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH------h-CCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998 69999994 6 99999999999988664
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.21 E-value=1.4e-11 Score=100.75 Aligned_cols=51 Identities=37% Similarity=0.682 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
+.++++||+|||+.|+.+|++||. +|..|+.. |++||..||++||+|++.+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~------~~~Rt~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT------FPNRNARQCRDRWKNYLAP 58 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT------CTTCCHHHHHHHHHHHTST
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH------cCCCCHHHHHHHHhhhccc
Confidence 467899999999999999999998 99999983 6799999999999998854
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=6.1e-12 Score=92.16 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQ 63 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~~ 63 (278)
..+.+||.|||+.|+.+|+.||. +|..|+.. .+||..||++||.+++......
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~-------~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAPI-------IGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHH-------HSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhcc-------cCcCHHHHHHHHHHHhChHhcC
Confidence 46889999999999999999998 99999992 4799999999999998776543
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.18 E-value=1.9e-11 Score=99.79 Aligned_cols=51 Identities=29% Similarity=0.633 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
..+++||+|||+.|+.+|++||.++|..|+.. |++||..||++||.+++.+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH------LKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH------SSSCCHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH------hcCCcHHHHHHHHHHhccc
Confidence 46899999999999999999999999999994 6799999999999998764
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=92.97 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLS 57 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~ 57 (278)
.+.+||+|||..|+++|++|| ++|..|++. +.+||..||++||.++.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~------v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSEH------VGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH------HSSCCHHHHHHHHTTSC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH------cCCCCHHHHHHHHHHhc
Confidence 478999999999999999999 899999994 57999999999999883
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.12 E-value=1.2e-10 Score=95.52 Aligned_cols=61 Identities=26% Similarity=0.498 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccccCCCcccC
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQQGSKDKIR 70 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~~~~~~k~r 70 (278)
..+++||+|||+.|+.+|.+||. +|..|+. +|++||..+|++||.++++.....++..+..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK------LIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT------TSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 45789999999999999999996 9999998 3689999999999999998876655555544
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.09 E-value=1.1e-10 Score=91.88 Aligned_cols=50 Identities=24% Similarity=0.564 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
..+++||+|||+.|+.+|.+||. +|..|+. +|++||..+|++||+++++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT------TCTTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHHHhc
Confidence 36789999999999999999997 9999998 36899999999999998764
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.07 E-value=2e-11 Score=102.91 Aligned_cols=53 Identities=32% Similarity=0.646 Sum_probs=10.9
Q ss_pred CC-CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 1 MG-NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 1 Mg-~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
|| -.+++||+|||+.|+.+|++||.++|..|+.. +++||+.||++||++++.+
T Consensus 1 ~g~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 54 (159)
T 1h89_C 1 MGHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANY------LPNRTDVQCQHRWQKVLNP 54 (159)
T ss_dssp ------------------------------------------------CHHHHHHTTTCT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH------cCCCCHHHHHHHHHHccCC
Confidence 55 56789999999999999999999999999983 6799999999999998865
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.05 E-value=1.6e-10 Score=94.40 Aligned_cols=52 Identities=27% Similarity=0.569 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
..+++||+|||+.|+.+|.+||. +|..|+.. |++||..+|++||+++++..+
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~------l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAKF------FPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT------STTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999996 99999983 689999999999999987644
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.02 E-value=1.5e-10 Score=92.01 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
..+++||+|||+.|+.+|.+||. +|..|++. |++||..+|++||.++++..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~------l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISKF------LKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHH------HSSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHHH------CCCCCHHHHHHHHHHHHhhH
Confidence 45789999999999999999997 99999983 68999999999999998763
No 37
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=2e-10 Score=86.72 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHG---PGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G---~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
.+.+||.|||..|+.+|.+|| +.+|..|+.. |++||..||++||.+|+...
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~------vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC------VPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG------CSSSCHHHHHHHHHHHHSSC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH------cCCCCHHHHHHHHHHHHHcc
Confidence 567899999999999999999 4599999994 68999999999999997654
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.01 E-value=3.6e-10 Score=95.27 Aligned_cols=51 Identities=29% Similarity=0.565 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
..+++||+|||+.|+.+|++||.++|..|+.. |++||..||++||.+++.+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~------l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH------LKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHT------STTCCHHHHHHHHHHTTCT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHH------cCCCCHHHHHHHHHHHhCc
Confidence 35789999999999999999999899999983 6899999999999998754
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.99 E-value=4.1e-10 Score=91.89 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
..+++||+|||+.|+.+|.+||. +|..|++. |++||..+|++||+++++.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~------l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL------LPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG------STTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHHH------CCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999997 99999983 6899999999999998764
No 40
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.53 E-value=5.1e-11 Score=92.64 Aligned_cols=52 Identities=25% Similarity=0.366 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
..+++||+|||+.|+.+|.+||. +|..|+.. |++||..||+++|.++++...
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~------l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIARM------VGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 45789999999999999999998 99999983 689999999999999886643
No 41
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.77 E-value=4e-09 Score=83.03 Aligned_cols=51 Identities=24% Similarity=0.483 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHG---PGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G---~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
.+.+||.|||..|..++.+|| +.+|..|+.. +++||..||++||.+|+...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~------vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARA------VEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH------STTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH------cCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999998 4679999994 68999999999999997553
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.70 E-value=1e-08 Score=92.94 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCC-----chhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGK-----WKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~Gk-----W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
..+.+||+|||+.|++.|++||..+ |..|++ +|+|||..+||+||+++++...
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk------~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH------YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT------TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH------HcCCCCHHHHHHHHHHHHhhhc
Confidence 4678999999999999999999853 999998 4789999999999999887654
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.7e-07 Score=66.73 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
...+||+||++.+..++.+||. +|..|+. +|++||..||...|....+.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~------~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIAS------YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-CHHHHHH------HCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHhcCC
Confidence 4579999999999999999996 9999997 37899999999999766544
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.35 E-value=2.5e-07 Score=69.45 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGP---GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
.....||.||+..|..+|.+|+. .+|..|+.. + +||..||+.+|..|....
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~------l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE------L-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH------H-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH------h-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999984 579999994 3 799999999999997663
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.08 E-value=3.3e-06 Score=66.51 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 6 ~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
.+||.||++.|.+++++||. +|-.|...+++.+ +.+||-.|||+||-.+.+..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~-~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTT-SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCC-CCCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999997 9999999866543 35899999999997766543
No 46
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.96 E-value=1e-05 Score=60.99 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 5 KQKWTAEEEEALLAGVAKHGP---GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k~G~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
...||.+|+.+|..++..|+. ++|..|+.. +++||..+|+.+|..|...
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~------V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA------VGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH------TTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH------cCCCCHHHHHHHHHHHHhc
Confidence 457999999999999999986 789999994 6799999999999998544
No 47
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.89 E-value=8.1e-06 Score=73.57 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
+...+||+||...++.|+.+||. +|..|++. +.+||..||+..|.+..+..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~------VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV------IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH------HSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------cCCCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999997 99999993 68999999999998877653
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.89 E-value=1.8e-05 Score=68.68 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCC--------CCCCCCCHHHHHHHHHHhccc
Q 023740 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFA--------PSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~--------~~l~~RT~vdLKDKWRnl~~~ 59 (278)
...||.+||..|+.||.+||-|+|..|..||.|+ .+...++.+.|..|-..|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999743 123467788999997666543
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.77 E-value=2.1e-05 Score=56.79 Aligned_cols=49 Identities=31% Similarity=0.447 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcc
Q 023740 5 KQKWTAEEEEALLAGVAKH--------GPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k~--------G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (278)
|.+||.|||..|++-|.+| |..-|+.|... .++.+|-.+++|||++.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-----~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-----SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-----CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-----HCCCCCHHHHHHHHHHHcc
Confidence 6899999999999999999 77789999882 2579999999999988654
No 50
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.40 E-value=7.4e-05 Score=68.77 Aligned_cols=32 Identities=50% Similarity=0.885 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhcccCCCCC
Q 023740 7 KWTAEEEEALLAGVAKHGPGKWKNILRDPQFA 38 (278)
Q Consensus 7 ~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~ 38 (278)
.|+.+||..|+.||.+||.|+|..|..||.+.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~ 201 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLG 201 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCcccC
Confidence 39999999999999999999999999999763
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.28 E-value=0.00027 Score=55.59 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcc
Q 023740 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (278)
Q Consensus 6 ~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (278)
..||.||.+.|.+.+++|+- +|--|...+.+.+ +..||-.|||+||-.+..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~-~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTT-SCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCC-CCCCCHHHHHHHHHHHHH
Confidence 47999999999999999997 9999999876643 458999999999865544
No 52
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.00056 Score=49.57 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
....||+||-....+|+.+||. +|..|..+ ++++||..||..-|-.-.+.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE-----LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH-----SCTTSCHHHHHHHHHHHHCS
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCcHHHHHHHHhcccCC
Confidence 3568999999999999999998 99999984 36899999999887554444
No 53
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.14 E-value=0.0013 Score=48.66 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
.....||+||-.....|+.+||. +|..|..+ ++++||..||..-|-.-.+...
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~~ 58 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQD-----FLPWKSLTSIIEYYYMWKTTDR 58 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT-----TCSSSCHHHHHHHHHHHHTCCS
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCCHHHHHHHHHhhcCCch
Confidence 34678999999999999999998 99999985 3789999999998875444433
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.08 E-value=0.00024 Score=66.41 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=48.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CCchhcc----cCCC--CCCCCCCCCHHHHHHHHHHhcccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGP---GKWKNIL----RDPQ--FAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~---GkW~~I~----~~~~--f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
++.+.||.+||..|+-++.+||. |+|..|. ..|. |.-|+..||+.+|..|-..|++..
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999 9999995 3343 455678999999999998887653
No 55
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.87 E-value=0.00039 Score=52.55 Aligned_cols=43 Identities=16% Similarity=0.417 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCC---CchhcccCCCCCCCCCCCCHHHHHHHHH
Q 023740 6 QKWTAEEEEALLAGVAKHGPG---KWKNILRDPQFAPSLTQRSNIDLKDKWR 54 (278)
Q Consensus 6 ~~WT~EEd~~L~~GV~k~G~G---kW~~I~~~~~f~~~l~~RT~vdLKDKWR 54 (278)
..||.+|+.+|..++.+|+.+ +|.+|+.. ++|||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~------VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQY------VKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG------SCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH------cCCCCHHHHHHHHH
Confidence 579999999999999999876 89999994 68999999998764
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.87 E-value=0.00019 Score=54.52 Aligned_cols=55 Identities=24% Similarity=0.331 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---------CCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGP---------GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~---------GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
....||.+|..+|+.....+-. ..|..|... +...=..||+.||++||.||.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~--m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSK--MREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH--HHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999875322 279888874 110002799999999999998764
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.61 E-value=0.0014 Score=64.60 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
...+||.||-..++.||.+||. +|..|... +..||..||+..|.+..+.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~------VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDV------IGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHH------HSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH------hCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998 99999984 6799999999998765544
No 58
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.39 E-value=0.0048 Score=48.08 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcc
Q 023740 5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (278)
...||+||-+.+.+++..||. +|..|.. ++++||..||-.-|-.-.+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~------~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS------FLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH------TCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH------HcCCCCHHHHHHHHhcccc
Confidence 468999999999999999997 9999976 4789999999987644333
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.03 E-value=0.003 Score=60.49 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhcccC----CC--CCCCCCCCCHHHHHHHHHHhcccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGP---GKWKNILRD----PQ--FAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~---GkW~~I~~~----~~--f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
+.+.||.+||..|+-++.+||. |+|..|..+ |. |.-||..||+..|..|-..|++..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999998543 43 444578999999999999987654
No 60
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.89 E-value=0.028 Score=44.09 Aligned_cols=55 Identities=18% Similarity=0.402 Sum_probs=46.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CCchhcccCCCCCCCCCCCCHHHHHHHHHHhcccccc
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGP--GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNAQ 62 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~~ 62 (278)
|..---||.|||..++...++-|. -.|..|.+. |.+|+..|+++||+.|++....
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~------L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ------LGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH------HSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH------HccCCHHHHHHHHHHHHHHHHH
Confidence 344557999999999999999987 589998884 6789999999999999876543
No 61
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=94.74 E-value=0.11 Score=41.85 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CCcchHHHHHHHHHhhhhcCceeee
Q 023740 113 DGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----APPNFRRLLSSRLRRLVSQGKLEKV 176 (278)
Q Consensus 113 ~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~n~~~~L~~~LKrlV~sGkLvkv 176 (278)
..++..+|..||..||..-. .+..+..-|..||+++|. -+..++..|+..|- -+.-|++|
T Consensus 14 ~~KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 77 (111)
T 2c6y_A 14 DSKPPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKV 77 (111)
T ss_dssp CCCCSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhccc
Confidence 34455689999999999853 456899999999999982 35677777777764 34566665
No 62
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=94.42 E-value=0.11 Score=40.55 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc----CCCcchHHHHHHHHHhhhhcCceeee
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ----EAPPNFRRLLSSRLRRLVSQGKLEKV 176 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~n~~~~L~~~LKrlV~sGkLvkv 176 (278)
++.-+|..||..||.+-. .++.+.+-|.+||+++| .-+..++..++..|- -+.-|+++
T Consensus 3 KPp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLS---ln~~F~kv 64 (93)
T 2a07_F 3 RPPFTYATLIRQAIMESS-DRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLS---LHKCFVRV 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHST-TSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCTTBCCE
T ss_pred CCCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCCccccCCCccccccceeee---hhhceeec
Confidence 345689999999999753 45689999999999998 234566777776664 33444444
No 63
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.14 E-value=0.009 Score=44.50 Aligned_cols=52 Identities=15% Similarity=0.355 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC--CCchhcccCCCCCCCCCCCCHHHHHHHHHHhccccc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGP--GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSNA 61 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (278)
-.--.||.|||..|+...++-|+ -.|..|+.. | +||..|+++||+.|++...
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~------L-nks~~QV~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAAK------L-DKNPNQVSERFQQLMKLFE 65 (70)
Confidence 34457999999999999999997 578888873 6 8999999999999987643
No 64
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.83 E-value=0.1 Score=38.24 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC--chhcccCCCCCCCCCCCCHHHHHHHHH
Q 023740 2 GNQKQKWTAEEEEALLAGVAKHGPGK--WKNILRDPQFAPSLTQRSNIDLKDKWR 54 (278)
Q Consensus 2 g~~k~~WT~EEd~~L~~GV~k~G~Gk--W~~I~~~~~f~~~l~~RT~vdLKDKWR 54 (278)
.++|-.||+|.-+.++++|+.+|..+ |+.|++. .+ ..+.|..+++.+..
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~--M~--v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDL--MN--VDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHH--HC--CTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHH--cC--CCCCCHHHHHHHHH
Confidence 46889999999999999999999532 7899874 22 36899999997653
No 65
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=93.49 E-value=0.16 Score=40.25 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc----CCCcchHHHHHHHHHhhhhcCceeee
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ----EAPPNFRRLLSSRLRRLVSQGKLEKV 176 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~n~~~~L~~~LKrlV~sGkLvkv 176 (278)
++.-+|..||..||.+- ..++.+..-|.+||+++| .-+..++..|+..|- -+.-|++|
T Consensus 3 KPp~SY~~LI~~AI~~s-p~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 64 (102)
T 1vtn_C 3 KPPYSYISLITMAIQQA-PGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLS---FNDCFVKV 64 (102)
T ss_dssp CCSSCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHH---HCTTEEEE
T ss_pred CcCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhh---hccceEec
Confidence 45568999999999975 344589999999999998 234567777777664 35566665
No 66
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.41 E-value=0.059 Score=48.90 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHh-h--------------------------------CC------------------------CC
Q 023740 5 KQKWTAEEEEALLAGVAK-H--------------------------------GP------------------------GK 27 (278)
Q Consensus 5 k~~WT~EEd~~L~~GV~k-~--------------------------------G~------------------------Gk 27 (278)
|.+||.+||-.|...|.+ | |+ +.
T Consensus 94 K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~ 173 (246)
T 1ign_A 94 KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREF 173 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTTH
T ss_pred cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHH
Confidence 789999999999999988 2 11 37
Q ss_pred chhcccCCCCCCCCCCCCHHHHHHHHHHhcccc
Q 023740 28 WKNILRDPQFAPSLTQRSNIDLKDKWRNLSVSN 60 (278)
Q Consensus 28 W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (278)
|+.|.+. +++||.+..||||+.++...
T Consensus 174 fk~ia~~------~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAEE------HAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHH------TTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHH------CCCCChhhHHHHHHHHHhhc
Confidence 9998884 68999999999999887654
No 67
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=93.32 E-value=0.23 Score=39.83 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc----CCCcchHHHHHHHHH
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ----EAPPNFRRLLSSRLR 165 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~n~~~~L~~~LK 165 (278)
++..+|..||..||.+- ..+..+..-|.+||+++| .-++.++..|+..|-
T Consensus 3 KPp~SYa~LI~~AI~~s-p~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS 56 (109)
T 2hfh_A 3 KPPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS 56 (109)
T ss_dssp CCCCCHHHHHHHHHHTC-SSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhh
Confidence 34568999999999874 345589999999999998 346778877777764
No 68
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.27 E-value=0.069 Score=45.94 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCCchhcccCCCCCCCCCCCCHHHHHHHHHHhc
Q 023740 4 QKQKWTAEEEEALLAGVAKHG--PGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLS 57 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G--~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~ 57 (278)
....||..|-..|+.++.+|| .++|..|..+.. |.++|..++++=++.+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~----L~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE----LVDKSETDLRRLGELVH 57 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT----CTTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc----cCCCCHHHHHHHHHHHH
Confidence 457899999999999999999 689999999854 46899999998655544
No 69
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=92.90 E-value=0.22 Score=41.69 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=45.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-----CCcchHHHHHHHHHhhhhcCceeee
Q 023740 109 TSALDGKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE-----APPNFRRLLSSRLRRLVSQGKLEKV 176 (278)
Q Consensus 109 ~~~~~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-----v~~n~~~~L~~~LKrlV~sGkLvkv 176 (278)
+.+...+..-+|..||..||....+ ++.+...|..||+++|. -+..++..|+..|- -+.-|+++
T Consensus 12 ~~~~~~KPpySYa~LI~~AI~~sp~-~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLS---ln~~F~r~ 80 (142)
T 3g73_A 12 QNSVSERPPYSYMAMIQFAINSTER-KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLS---LHDMFVRE 80 (142)
T ss_dssp --CTTSCCSSCHHHHHHHHHHTSTT-SEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHH---HCTTEEEE
T ss_pred CccCCCCCCCCHHHHHHHHHHhCCC-CCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhh---hhhhheec
Confidence 4444556666899999999988443 44899999999999983 45677777777663 34555554
No 70
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.78 E-value=0.18 Score=39.51 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc----CCCcchHHHHHHHHH
Q 023740 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ----EAPPNFRRLLSSRLR 165 (278)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~n~~~~L~~~LK 165 (278)
+..+|..||..||.+-. .++.+.+-|.+||+++| .-++.++..|+..|-
T Consensus 3 Pp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS 55 (97)
T 2hdc_A 3 PPYSYIALITMAILQSP-QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS 55 (97)
T ss_dssp CCCCHHHHHHHHHHTCT-TTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhh
Confidence 34679999999998743 45689999999999998 235566767776664
No 71
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=91.80 E-value=0.46 Score=38.01 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc---CC------CcchHHHHHHHHHhhhhcCceeeec
Q 023740 114 GKNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ---EA------PPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 114 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y---~v------~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
.+..-+|..||..||....++ ..+...|..||+++| .. ...++..|+..|- -+.-|++|.
T Consensus 23 ~kPpySY~~LI~~AI~~sp~~-~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 23 AWGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp TTBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCcc-CcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 344568999999999986554 489999999999998 21 2467777777664 456677764
No 72
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=91.66 E-value=0.21 Score=39.34 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CCcchHHHHHHHHHhhhhcCceeee
Q 023740 116 NGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----APPNFRRLLSSRLRRLVSQGKLEKV 176 (278)
Q Consensus 116 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~n~~~~L~~~LKrlV~sGkLvkv 176 (278)
+..+|..||..||.+-. .+..+.+-|.+||+++|. -+..++..|+..|- -+.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 63 (100)
T 1kq8_A 3 PPYSYIALITMAIRDSA-GGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLS---LNDCFVKV 63 (100)
T ss_dssp ----CHHHHHHHHTTSS-SSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHH---HHTCCEEC
T ss_pred CCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHhCccccCCCCceecccchhee---hhheeeec
Confidence 34578999999999854 345899999999999982 35667777777664 23445554
No 73
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=91.16 E-value=0.63 Score=35.49 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhc---C-C-----CcchHHHHHHHHHhhhhcCceeeec
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQ---E-A-----PPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y---~-v-----~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
+...+|..||..||....++ ..+.+.|..||+++| . . ...++..|+..|- -+.-|++|.
T Consensus 5 kp~~SY~~LI~~Ai~~sp~~-~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 5 WGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp TBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred cCCCCHHHHHHHHHHhCCcC-CccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 33468999999999985544 489999999999998 2 1 2356777777664 456677664
No 74
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=89.71 E-value=0.84 Score=36.94 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC----CC-----cchHHHHHHHHHhhhhcCceeeec
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE----AP-----PNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~-----~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
++..+|..||..||..- ..+..++.-|..||+++|. -+ ..++..|+..|- -+.-|++|.
T Consensus 11 kPp~SYa~LI~~AI~~s-p~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv~ 78 (117)
T 3coa_C 11 WGNLSYADLITKAIESS-AEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRVQ 78 (117)
T ss_dssp TBSCCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhcccc
Confidence 34568999999999974 3455899999999999982 12 456666766653 446666663
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.57 E-value=1 Score=41.25 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CCchhcccCCCCCCCCCCCCHHHHHHHHHHhccc
Q 023740 4 QKQKWTAEEEEALLAGVAKHGP--GKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSVS 59 (278)
Q Consensus 4 ~k~~WT~EEd~~L~~GV~k~G~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (278)
|++.||.-|...|+..+.+||. ++|..|..|-. |..++...++.=+..|...
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~----L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT----LPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS----SCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHH
Confidence 7899999999999999999994 89999999853 5689999999877766543
No 76
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=83.45 E-value=1.5 Score=36.99 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcC-C--------CcchHHHHHHHHHhhhhcCceeeec
Q 023740 115 KNGPKYNAMIFEAISTLKDANGSDISAIANFIEERQE-A--------PPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 115 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v--------~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
....+|..||..||..-. .+..++.-|..||+++|. . ...++..|+..|- -+.-|++|.
T Consensus 40 kPp~SYa~LI~~AI~sSp-~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLS---Lnk~F~Kv~ 107 (150)
T 1e17_A 40 WGNQSYAELISQAIESAP-EKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 107 (150)
T ss_dssp TCSCCHHHHHHHHHHHSS-SCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHH---SSTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeee---eeeeeEecC
Confidence 345689999999999854 345899999999999982 1 1345555665553 455677664
No 77
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=77.72 E-value=0.46 Score=46.90 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHH
Q 023740 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRN 55 (278)
Q Consensus 6 ~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRn 55 (278)
..||++|...+..|+.+||. +|..|.+ +|++||-.+|-.-|-.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~------~lp~Ksv~e~V~yYY~ 232 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ------MLPDKSIASLVKFYYS 232 (482)
T ss_dssp --------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH------HcCCCCHHHHHHHhcc
Confidence 47999999999999999997 9999986 3789999999876433
No 78
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=73.34 E-value=4.2 Score=37.77 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhcccCCCCCCCCCCCCHHHHHHHHHHhcc
Q 023740 6 QKWTAEEEEALLAGVAKHGPGKWKNILRDPQFAPSLTQRSNIDLKDKWRNLSV 58 (278)
Q Consensus 6 ~~WT~EEd~~L~~GV~k~G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (278)
..||..+-..++.|+.+||...|..|+.+ +.+.|..+++.-...+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e------v~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD------VEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS------STTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH------hcCCCHHHHHHHHHHHHH
Confidence 46999999999999999999999999996 468999999876555543
No 79
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=67.40 E-value=8.2 Score=28.13 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec---cccccCC
Q 023740 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRK 184 (278)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK---~sykl~~ 184 (278)
.+..|++.|..+.+..+.+...|++-+. ++ ++.++..|.+|...|.|..+. +.|.+.+
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC----CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 3567888888888888899888887764 44 468999999999999998864 4666654
No 80
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=61.18 E-value=15 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccccccCC
Q 023740 119 KYNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCYKIRK 184 (278)
Q Consensus 119 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~sykl~~ 184 (278)
+.-++|.+-+..+.+ |..+..|+..+.=+ -+.++..|..|.+.|-+.+..+.|.|.+
T Consensus 5 s~~eIi~~IL~~i~~--~~~~t~La~~~~ls-------~~~~~~~l~~L~~~GLI~~~~~~~~LT~ 61 (95)
T 1r7j_A 5 SKLEIIQAILEACKS--GSPKTRIMYGANLS-------YALTGRYIKMLMDLEIIRQEGKQYMLTK 61 (95)
T ss_dssp CHHHHHHHHHHHHTT--CBCHHHHHHHHTCC-------HHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHhCcC-------HHHHHHHHHHHHHCCCeEEECCeeEECh
Confidence 456788888888874 38888887765433 3578899999999999999998899864
No 81
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=59.70 E-value=11 Score=29.68 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhcCcCCC-CCHHHHHHHHHHhc
Q 023740 118 PKYNAMIFEAISTLKDANG-SDISAIANFIEERQ 150 (278)
Q Consensus 118 p~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y 150 (278)
....++|.+||..+.+.+| .+..+|-.||..+|
T Consensus 20 ~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~ 53 (105)
T 2kpm_A 20 AFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQ 53 (105)
T ss_dssp CCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhC
Confidence 3458999999999988777 79999999999987
No 82
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=58.43 E-value=14 Score=27.60 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecc
Q 023740 121 NAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRN 178 (278)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~ 178 (278)
.++|+.||..|.+.....-.-|++ +.+++ ++-++..|-+|..+|.|.++.+
T Consensus 14 ~~~v~~~i~~L~~~~~~Ta~~IAk----kLg~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 14 FSLVKKEVLSLNTNDYTTAISLSN----RLKIN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHH----HTTCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHhCCCCcchHHHHHHH----HHCCC---HHHHHHHHHHHHHCCCEecCCC
Confidence 678999999999887766555554 55555 4679999999999999988764
No 83
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=53.01 E-value=0.98 Score=29.50 Aligned_cols=24 Identities=42% Similarity=0.304 Sum_probs=12.7
Q ss_pred HHhhHhhhhHHHHHHHHHHHHhHH
Q 023740 230 EAENKSFLAAEAFKEAERVSKMAE 253 (278)
Q Consensus 230 EAE~~~~~A~eA~~eae~~~~~ae 253 (278)
+||.+.-+|++|+++||.++++||
T Consensus 12 dAe~aAkdAe~a~~~AEqAsKdAe 35 (38)
T 1psm_A 12 DAEQAAKDAENASKEAEEAAKEAV 35 (38)
T ss_dssp HHHSTTTTTTHHHHHTTTTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555543
No 84
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=52.31 E-value=33 Score=25.30 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec---cccccCCC
Q 023740 121 NAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR---NCYKIRKE 185 (278)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK---~sykl~~~ 185 (278)
+.-|++.|.......+.+..-|++-+. ++ ++.++.+|.+|...|.|..+. +.|.+.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg----vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCc
Confidence 455778887666556778887776654 44 568999999999999998764 47777654
No 85
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=48.57 E-value=30 Score=26.19 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecccc-ccC
Q 023740 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCY-KIR 183 (278)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~sy-kl~ 183 (278)
..+.|++++....++- +-.-| .+.-.++ ++-|+.+|++|-..|+|+.++.+| .|.
T Consensus 20 ~eekVLe~LkeaG~Pl--kageI----ae~~Gvd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPV--KLAQL----VKECQAP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCE--EHHHH----HHHHTSC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCCC--CHHHH----HHHHCCC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 3678999988877763 23333 3344555 578999999999999999998754 553
No 86
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=44.81 E-value=32 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhcCceeeeccccccCCC
Q 023740 157 RRLLSSRLRRLVSQGKLEKVRNCYKIRKE 185 (278)
Q Consensus 157 ~~~L~~~LKrlV~sGkLvkvK~sykl~~~ 185 (278)
...++.+|+.|.+.|.|....|.|.|.+.
T Consensus 57 ~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 57 KKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 45689999999999999987788888763
No 87
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=43.72 E-value=20 Score=26.31 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=22.9
Q ss_pred HHHHHHHhcCcCCCCCH---HHHHHHHHHhc
Q 023740 123 MIFEAISTLKDANGSDI---SAIANFIEERQ 150 (278)
Q Consensus 123 MI~EAI~~Lker~GSS~---~AI~kyIe~~y 150 (278)
-|-.||+....|.|.|. |-|+.||..||
T Consensus 52 yinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 52 YINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 35568899999999986 56899999887
No 88
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=41.22 E-value=31 Score=26.32 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhcCcCCC-CCHHHHHHHHHHhc-CC-CcchH-HHHHHHHH
Q 023740 119 KYNAMIFEAISTLKDANG-SDISAIANFIEERQ-EA-PPNFR-RLLSSRLR 165 (278)
Q Consensus 119 ~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y-~v-~~n~~-~~L~~~LK 165 (278)
...++|.+||..+.+.+| .+..+|-.||..+| .. |.||. +.|+.-|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~ 58 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVK 58 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcccHHHHHH
Confidence 578999999999988777 79999999999998 33 44543 33444443
No 89
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=38.11 E-value=49 Score=22.98 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec-cccccC
Q 023740 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR-NCYKIR 183 (278)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK-~sykl~ 183 (278)
...-|++.+.. +....|...|+. ...++ +..+...|+.|.+.|.|+..+ |.|.|.
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~----~lgls---r~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVK----KCQVP---KKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHH----HHCSC---HHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHH----HHCcC---HHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 35567777764 223466666554 44565 678889999999999988764 577763
No 90
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=37.98 E-value=86 Score=22.48 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 023740 121 NAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 121 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
.-.|+..| .+.+|.+...|.+.|.+...+. ...++..|++|+..|-|.+..
T Consensus 10 q~~iL~~l---~~~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 10 EAIVLAYL---YDNEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHHH---TTCTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH---HHcCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEEEe
Confidence 34455555 4457789999988887776665 457889999999999998764
No 91
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=37.28 E-value=20 Score=26.60 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhcCceee-eccccccC
Q 023740 158 RLLSSRLRRLVSQGKLEK-VRNCYKIR 183 (278)
Q Consensus 158 ~~L~~~LKrlV~sGkLvk-vK~sykl~ 183 (278)
..|..-|-++|..|+|+- ..|.|||+
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 689999999999999997 58999984
No 92
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=33.81 E-value=1.1e+02 Score=21.40 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 023740 120 YNAMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 120 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
....|++.|-. .++.+...|...+.....+. ...+...|++|++.|-|.+.+
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTSTWS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCCcc---HHHHHHHHHHHHHCCCeEEEe
Confidence 45667787766 45789999999997653232 467899999999999999875
No 93
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=32.69 E-value=25 Score=24.72 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=29.5
Q ss_pred HHhcCcCCCCCHHHHHHHHHHhc---CCCcchHHHHHHHHHhh
Q 023740 128 ISTLKDANGSDISAIANFIEERQ---EAPPNFRRLLSSRLRRL 167 (278)
Q Consensus 128 I~~Lker~GSS~~AI~kyIe~~y---~v~~n~~~~L~~~LKrl 167 (278)
|..+.+.-|.|+.+|..++..+- .+.+..+..|...++.+
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 34556677999999999999876 67777676666666543
No 94
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=32.30 E-value=62 Score=24.59 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcC-cCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccccccC
Q 023740 121 NAMIFEAISTLK-DANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCYKIR 183 (278)
Q Consensus 121 ~~MI~EAI~~Lk-er~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~sykl~ 183 (278)
..-++.+|..+. +..+.+...|+..+ .++ +..++..|++|...|-|.+..+.|.|.
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l----~is---~~tv~~~l~~Le~~Gli~r~~~~~~Lt 71 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDL----KIA---PSSVFEEVSHLEEKGLVKKKEDGVWIT 71 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHh----CCC---hHHHHHHHHHHHHCCCEEecCCeEEEC
Confidence 344666776653 44567888887765 343 567899999999999988766455553
No 95
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=31.96 E-value=14 Score=23.43 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=7.5
Q ss_pred HHHHHHHhcC
Q 023740 262 VKEIYERCSR 271 (278)
Q Consensus 262 a~ei~~~c~~ 271 (278)
..+||+||+.
T Consensus 13 ~~lIl~RCs~ 22 (32)
T 1k4u_P 13 ADLILNRCSE 22 (32)
T ss_dssp HHHHHHSSCH
T ss_pred HHHHHHHccH
Confidence 3589999973
No 96
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=29.66 E-value=80 Score=22.67 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=29.6
Q ss_pred HhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 023740 129 STLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 129 ~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
..|.+ ++.+...|+..+ +++ ...++.+|+.|.+.|-|...+
T Consensus 30 ~~L~~-~~~~~~ela~~l----~is---~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 30 CMLHN-QELSVGELCAKL----QLS---QSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHTTT-SCEEHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHhc-CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCeEEEE
Confidence 33444 566777777666 333 457999999999999998765
No 97
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=28.60 E-value=68 Score=22.65 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=28.4
Q ss_pred CcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeec
Q 023740 132 KDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 132 ker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
.+..+.+...|+..+ +++ ...++..|+.|...|.|...+
T Consensus 34 ~~~~~~s~~ela~~l----~is---~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 34 SGSPGTSAGELTRIT----GLS---ASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp TTCCSEEHHHHHHHH----CCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEEe
Confidence 444567777776655 333 457899999999999998765
No 98
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.78 E-value=1.5e+02 Score=20.53 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCcC-CCCCHHHHHHHHHHhc-CCCcchHHHHHHHHHhhhhcCceeeec
Q 023740 121 NAMIFEAISTLKDA-NGSDISAIANFIEERQ-EAPPNFRRLLSSRLRRLVSQGKLEKVR 177 (278)
Q Consensus 121 ~~MI~EAI~~Lker-~GSS~~AI~kyIe~~y-~v~~n~~~~L~~~LKrlV~sGkLvkvK 177 (278)
...|++.|..- . ...|...|...+.+++ .++ ..-+...|+.|++.|.|.++.
T Consensus 19 r~~IL~~l~~~--~~~~~s~~el~~~l~~~~~~is---~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEP--DNHHVSAEDLYKRLIDMGEEIG---LATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSG--GGSSBCHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhC--CCCCCCHHHHHHHHHHhCCCCC---HhhHHHHHHHHHHCCCeEEEe
Confidence 45677777532 2 4689999999998775 232 467888999999999999875
No 99
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=25.76 E-value=54 Score=24.60 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeecc
Q 023740 122 AMIFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRN 178 (278)
Q Consensus 122 ~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~ 178 (278)
.+...-|.-|+ .+|.+...|++- .+++ +..++.+|.+|...|.|.+..+
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~----LgiS---k~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQ----LNME---KREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHH----SSSC---HHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHH----HCcC---HHHHHHHHHHHHHCCCEEeCCC
Confidence 34555566677 567776666654 4454 4689999999999999998765
No 100
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=25.23 E-value=90 Score=26.71 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=37.9
Q ss_pred HHHHHHhcCcCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeee-ccccccCCC
Q 023740 124 IFEAISTLKDANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKV-RNCYKIRKE 185 (278)
Q Consensus 124 I~EAI~~Lker~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkv-K~sykl~~~ 185 (278)
|+++|.. .+.+.+...|...+ +++ +..+...|+.|++.|-|.+. .+.|+|.+.
T Consensus 13 iL~~l~~--~~~~~~~~ela~~~----gl~---~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~ 66 (249)
T 1mkm_A 13 ILDFIVK--NPGDVSVSEIAEKF----NMS---VSNAYKYMVVLEEKGFVLRKKDKRYVPGYK 66 (249)
T ss_dssp HHHHHHH--CSSCBCHHHHHHHT----TCC---HHHHHHHHHHHHHTTSEEECTTSCEEECTH
T ss_pred HHHHHHh--CCCCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCcEEECCCCcEEECHH
Confidence 5666654 23467777766543 454 56788889999999999997 578998764
No 101
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.75 E-value=1.7e+02 Score=21.25 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhcCceeeeccc
Q 023740 158 RLLSSRLRRLVSQGKLEKVRNC 179 (278)
Q Consensus 158 ~~L~~~LKrlV~sGkLvkvK~s 179 (278)
..+...|+.|...|.|.++.|.
T Consensus 39 ~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 39 YQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHCCcEEecCCC
Confidence 4589999999999999998653
No 102
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=23.35 E-value=32 Score=27.72 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhc
Q 023740 7 KWTAEEEEALLAGVAKHGPGKWKNI 31 (278)
Q Consensus 7 ~WT~EEd~~L~~GV~k~G~GkW~~I 31 (278)
+|+++|+..|+.+-.+||. +|..-
T Consensus 81 ~~p~e~~~rv~~~h~~~gn-~~~~~ 104 (121)
T 2juh_A 81 PVPQDLLDRVLAAHAYWSQ-QQGKQ 104 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHCCS
T ss_pred CCCHHHHHHHHHHHHHHcc-chhcc
Confidence 8999999999999999997 88773
No 103
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=20.60 E-value=54 Score=24.81 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=24.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-CCchhcc
Q 023740 3 NQKQKWTAEEEEALLAGVAKHGP-GKWKNIL 32 (278)
Q Consensus 3 ~~k~~WT~EEd~~L~~GV~k~G~-GkW~~I~ 32 (278)
.....|+++=|+++.+++..|-+ |.|+-++
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~l 34 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIIL 34 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceee
Confidence 45678999999999999999976 5665555
No 104
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=20.32 E-value=1.9e+02 Score=21.85 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHhcC-------cCCCCCHHHHHHHHHHhcCCCcchHHHHHHHHHhhhhcCceeeeccccccCC
Q 023740 119 KYNAMIFEAISTLK-------DANGSDISAIANFIEERQEAPPNFRRLLSSRLRRLVSQGKLEKVRNCYKIRK 184 (278)
Q Consensus 119 ~y~~MI~EAI~~Lk-------er~GSS~~AI~kyIe~~y~v~~n~~~~L~~~LKrlV~sGkLvkvK~sykl~~ 184 (278)
.|..+.-+.+..|. ++-|.++.-+......++ + .+++..-|..+++.|.|+...+-..++.
T Consensus 63 ~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~--~---~~~~~~ll~~l~~~g~l~~~~~~v~Lp~ 130 (135)
T 2v9v_A 63 RYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL--P---ARVYQALLEEWSREGRLQLAANTVALAG 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS--C---HHHHHHHHHHHHHTTSEEECSSEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC--C---HHHHHHHHHHHHHCCCEEecCCEEECCC
Confidence 35666666666666 689999999988773221 2 4567777899999999999998888753
Done!