Query 023742
Match_columns 278
No_of_seqs 236 out of 1057
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:19:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1.3E-58 2.7E-63 431.3 11.2 257 1-278 2-262 (408)
2 PF03547 Mem_trans: Membrane t 100.0 4.7E-31 1E-35 250.6 19.6 153 10-177 2-154 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.9 1.4E-20 3.1E-25 175.9 18.3 147 7-169 3-155 (321)
4 COG0679 Predicted permeases [G 99.8 8.6E-20 1.9E-24 170.8 16.6 152 7-175 2-154 (311)
5 PRK09903 putative transporter 99.8 8.1E-19 1.8E-23 164.0 17.1 149 9-171 4-153 (314)
6 TIGR00841 bass bile acid trans 96.8 0.031 6.8E-07 51.9 13.2 80 72-161 194-273 (286)
7 TIGR00832 acr3 arsenical-resis 94.2 0.65 1.4E-05 44.1 11.5 50 77-127 250-299 (328)
8 COG0385 Predicted Na+-dependen 93.2 1.9 4.1E-05 41.1 12.6 76 48-126 199-275 (319)
9 PF13593 DUF4137: SBF-like CPA 90.8 3 6.6E-05 39.3 11.0 106 17-127 167-279 (313)
10 TIGR00783 ccs citrate carrier 89.0 4.8 0.0001 38.8 10.8 101 17-120 207-315 (347)
11 PF05684 DUF819: Protein of un 88.6 15 0.00033 35.7 14.2 104 13-119 24-132 (378)
12 PF05684 DUF819: Protein of un 72.6 97 0.0021 30.1 14.8 134 15-167 241-375 (378)
13 TIGR00807 malonate_madL malona 70.6 52 0.0011 27.1 9.0 80 15-98 38-117 (125)
14 PF03956 DUF340: Membrane prot 64.9 35 0.00075 30.1 7.7 130 21-169 5-136 (191)
15 PRK11281 hypothetical protein; 64.6 2.3E+02 0.005 31.8 15.3 50 46-99 625-674 (1113)
16 KOG1650 Predicted K+/H+-antipo 64.4 1E+02 0.0023 32.9 12.4 94 31-127 295-388 (769)
17 TIGR03802 Asp_Ala_antiprt aspa 64.1 81 0.0018 32.3 11.2 109 10-122 8-136 (562)
18 PF03616 Glt_symporter: Sodium 62.6 1.3E+02 0.0029 29.0 11.9 82 82-173 103-188 (368)
19 COG5505 Predicted integral mem 62.3 54 0.0012 31.5 8.7 86 31-119 47-136 (384)
20 PRK11339 abgT putative aminobe 60.2 21 0.00045 36.2 6.0 147 15-176 91-244 (508)
21 PRK04972 putative transporter; 58.4 2.2E+02 0.0048 29.1 14.2 162 12-179 12-195 (558)
22 PF03812 KdgT: 2-keto-3-deoxyg 58.1 47 0.001 31.6 7.7 104 15-126 172-276 (314)
23 PF03390 2HCT: 2-hydroxycarbox 57.5 1.4E+02 0.0029 29.7 11.0 88 31-119 286-381 (414)
24 PF03817 MadL: Malonate transp 57.3 1E+02 0.0023 25.4 8.5 79 15-97 38-116 (125)
25 PRK01658 holin-like protein; V 52.1 70 0.0015 26.1 6.9 61 33-98 53-115 (122)
26 PF05982 DUF897: Domain of unk 52.0 2.3E+02 0.0049 27.3 16.4 132 18-168 3-138 (327)
27 PLN03159 cation/H(+) antiporte 51.8 3.4E+02 0.0074 29.3 13.8 86 37-125 313-401 (832)
28 PF02673 BacA: Bacitracin resi 51.3 1.1E+02 0.0023 28.2 8.8 59 40-98 179-241 (259)
29 COG3329 Predicted permease [Ge 50.5 2.4E+02 0.0052 27.2 15.0 129 1-136 1-133 (372)
30 TIGR00793 kdgT 2-keto-3-deoxyg 49.9 90 0.002 29.7 8.0 101 18-126 175-276 (314)
31 COG3105 Uncharacterized protei 47.6 28 0.0006 29.1 3.8 23 77-99 9-31 (138)
32 COG1380 Putative effector of m 46.7 52 0.0011 27.3 5.3 64 31-98 52-116 (128)
33 PF06295 DUF1043: Protein of u 45.9 19 0.00041 29.6 2.7 22 79-100 2-23 (128)
34 PRK10929 putative mechanosensi 43.5 2E+02 0.0042 32.3 10.5 49 47-99 605-653 (1109)
35 PRK01844 hypothetical protein; 43.2 45 0.00097 25.0 4.0 25 72-96 3-27 (72)
36 PF03390 2HCT: 2-hydroxycarbox 43.0 3.5E+02 0.0076 26.9 12.0 105 18-126 63-177 (414)
37 COG3763 Uncharacterized protei 43.0 45 0.00097 24.9 3.9 25 72-96 3-27 (71)
38 PF02667 SCFA_trans: Short cha 41.9 3.8E+02 0.0082 27.0 12.9 37 2-48 53-89 (453)
39 PRK03818 putative transporter; 41.3 4.1E+02 0.0088 27.2 14.7 50 72-122 90-139 (552)
40 PRK12460 2-keto-3-deoxyglucona 40.4 3.2E+02 0.0069 26.1 10.2 102 15-125 167-269 (312)
41 PRK11677 hypothetical protein; 40.0 31 0.00066 28.8 3.0 23 78-100 5-27 (134)
42 TIGR01427 PTS_IIC_fructo PTS s 40.0 3.4E+02 0.0074 26.1 10.6 96 4-104 16-139 (346)
43 TIGR00831 a_cpa1 Na+/H+ antipo 39.9 2.7E+02 0.0059 28.1 10.4 52 17-73 25-76 (525)
44 TIGR01995 PTS-II-ABC-beta PTS 38.9 2.9E+02 0.0064 28.6 10.6 63 3-68 99-170 (610)
45 PRK05326 potassium/proton anti 38.5 2E+02 0.0044 29.1 9.3 55 17-74 247-301 (562)
46 COG1968 BacA Undecaprenyl pyro 38.4 3.4E+02 0.0073 25.4 10.0 56 40-96 184-239 (270)
47 PRK04125 murein hydrolase regu 38.4 1.3E+02 0.0029 25.2 6.7 57 34-95 57-115 (141)
48 TIGR00753 undec_PP_bacA undeca 37.9 2.8E+02 0.0061 25.5 9.3 24 40-63 179-202 (255)
49 COG0798 ACR3 Arsenite efflux p 37.7 3.9E+02 0.0084 25.9 13.8 48 79-127 253-300 (342)
50 PF12794 MscS_TM: Mechanosensi 37.4 3.7E+02 0.008 25.6 15.1 54 45-102 130-183 (340)
51 TIGR00832 acr3 arsenical-resis 36.2 2.7E+02 0.0058 26.4 9.2 52 58-109 54-111 (328)
52 PF03601 Cons_hypoth698: Conse 35.7 3.8E+02 0.0083 25.2 10.5 143 16-175 28-176 (305)
53 TIGR00840 b_cpa1 sodium/hydrog 35.5 3.7E+02 0.008 27.5 10.6 44 44-88 65-109 (559)
54 PF03977 OAD_beta: Na+-transpo 34.8 4.1E+02 0.0089 25.8 10.0 81 15-98 213-298 (360)
55 TIGR00366 conserved hypothetic 34.8 3.2E+02 0.0069 27.3 9.6 84 12-112 56-141 (438)
56 PF06691 DUF1189: Protein of u 34.7 3.4E+02 0.0073 24.3 9.9 47 14-63 176-222 (250)
57 PF11241 DUF3043: Protein of u 33.3 3E+02 0.0064 24.0 8.1 23 38-60 72-94 (170)
58 TIGR00783 ccs citrate carrier 32.9 4.6E+02 0.01 25.4 10.2 94 31-126 5-108 (347)
59 PRK12554 undecaprenyl pyrophos 32.7 4E+02 0.0086 24.8 9.5 24 40-63 185-208 (276)
60 TIGR03082 Gneg_AbrB_dup membra 32.3 3E+02 0.0065 23.0 8.7 64 52-119 56-120 (156)
61 KOG4112 Signal peptidase subun 30.3 29 0.00063 27.4 1.3 12 266-277 33-44 (101)
62 PF06305 DUF1049: Protein of u 30.0 86 0.0019 22.1 3.7 24 73-96 18-41 (68)
63 TIGR00819 ydaH p-Aminobenzoyl- 29.8 81 0.0017 32.1 4.7 146 16-176 88-240 (513)
64 PRK01821 hypothetical protein; 28.8 2.4E+02 0.0053 23.4 6.7 50 45-98 69-120 (133)
65 PRK00523 hypothetical protein; 28.5 1.1E+02 0.0023 23.0 4.0 24 73-96 5-28 (72)
66 PF13858 DUF4199: Protein of u 27.3 3.5E+02 0.0076 22.2 9.5 94 2-98 62-161 (163)
67 COG0679 Predicted permeases [G 27.2 4.4E+02 0.0096 24.5 9.0 93 16-111 169-263 (311)
68 COG2991 Uncharacterized protei 26.9 52 0.0011 24.7 2.1 27 6-34 3-29 (77)
69 COG3493 CitS Na+/citrate sympo 26.8 6.1E+02 0.013 25.2 9.8 99 25-126 87-194 (438)
70 PRK00281 undecaprenyl pyrophos 26.8 5.2E+02 0.011 23.9 9.7 24 40-63 183-206 (268)
71 TIGR00844 c_cpa1 na(+)/h(+) an 26.4 8.6E+02 0.019 26.4 16.3 60 17-77 41-103 (810)
72 PF07672 MFS_Mycoplasma: Mycop 26.3 98 0.0021 28.9 4.2 84 80-173 147-231 (267)
73 PF05145 AmoA: Putative ammoni 26.3 3.3E+02 0.0071 25.7 7.9 57 59-118 37-97 (318)
74 PF04235 DUF418: Protein of un 26.2 3.7E+02 0.0081 22.1 9.4 92 7-100 55-150 (163)
75 COG3493 CitS Na+/citrate sympo 25.8 6.7E+02 0.015 24.9 11.4 98 16-117 292-395 (438)
76 PF11299 DUF3100: Protein of u 25.7 5.3E+02 0.011 23.7 10.0 89 14-102 21-113 (241)
77 PF03616 Glt_symporter: Sodium 24.8 6.4E+02 0.014 24.3 11.7 88 35-130 272-365 (368)
78 PRK02975 putative common antig 23.8 2.9E+02 0.0062 27.3 6.9 49 24-76 136-186 (450)
79 COG4129 Predicted membrane pro 23.5 5.9E+02 0.013 24.4 9.1 39 78-116 11-49 (332)
80 KOG1965 Sodium/hydrogen exchan 23.2 2.4E+02 0.0053 29.2 6.7 49 14-62 41-116 (575)
81 TIGR01183 ntrB nitrate ABC tra 23.0 4.6E+02 0.01 22.8 7.8 50 76-125 27-76 (202)
82 PRK03562 glutathione-regulated 22.9 8.6E+02 0.019 25.1 14.7 104 49-159 271-375 (621)
83 PRK11404 putative PTS system 22.4 5.1E+02 0.011 26.1 8.8 56 3-60 127-196 (482)
84 COG2978 AbgT Putative p-aminob 21.8 82 0.0018 31.8 3.0 141 18-176 95-245 (516)
85 PF06899 WzyE: WzyE protein; 21.8 1.8E+02 0.0038 29.0 5.1 34 30-63 143-176 (448)
86 KOG2262 Sexual differentiation 21.7 74 0.0016 33.5 2.7 95 67-171 439-535 (761)
87 PF12072 DUF3552: Domain of un 21.5 1E+02 0.0022 27.1 3.3 22 76-97 3-24 (201)
88 COG4986 ABC-type anion transpo 21.5 5.3E+02 0.012 26.0 8.4 90 75-176 18-111 (523)
89 PF11120 DUF2636: Protein of u 21.2 2E+02 0.0043 20.9 4.1 27 65-97 2-28 (62)
90 TIGR03802 Asp_Ala_antiprt aspa 20.8 9.1E+02 0.02 24.7 13.5 85 35-122 441-527 (562)
91 COG0385 Predicted Na+-dependen 20.7 7.5E+02 0.016 23.7 14.2 65 50-114 41-110 (319)
92 PF03672 UPF0154: Uncharacteri 20.5 1E+02 0.0022 22.6 2.5 18 79-96 3-20 (64)
93 PF07219 HemY_N: HemY protein 20.4 1.3E+02 0.0028 23.6 3.4 32 71-102 15-46 (108)
94 TIGR01996 PTS-II-BC-sucr PTS s 20.1 6.4E+02 0.014 25.1 9.0 17 47-64 163-179 (461)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-58 Score=431.35 Aligned_cols=257 Identities=45% Similarity=0.831 Sum_probs=220.3
Q ss_pred CChHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHH
Q 023742 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (278)
Q Consensus 1 m~~~~l~~~a~--~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~ 78 (278)
|+|++++-.+. +|++++++++.+||++|+++.|++++|+||.+|+++||+|+|||||+++++++|++++.+|||||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 78999998888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhH
Q 023742 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (278)
Q Consensus 79 ~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~i 158 (278)
+.+++++|.++||++.|++|+|++.|++.++||+|||+||||+.+++|+|+++++|||++|.|.++|+.|++++|+++++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhcch-hhHHhhhhcCCCCCCCccccccccchhhhhcccCCCCCCcchhhhhccCCCCCCCcccccccccc
Q 023742 159 FIWSYSYQLIKQSS-VRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS 237 (278)
Q Consensus 159 l~wT~g~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (278)
+.|||+|+++.+++ ++++.+++. ..|. ..++.+ ..+.++++|+++|++++++ +++ . +.
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~------~~~~~~--~~s~e~~~~~~~k~~ll~~-~en---~--------~~ 220 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKES-PVEA------LLESVP--QPSVESDEDSTCKTLLLAS-KEN---R--------NN 220 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChh-hhhh------hhhccC--CCCcccccccccccccccc-ccc---C--------CC
Confidence 99999999887775 333333322 2111 110111 1345566666778777741 111 0 11
Q ss_pred chhhhhhhhhhhHHHHHHHH-HHHhcChhHHHHHHHHhhcCC
Q 023742 238 HLQTRKESFWKRSLEFLHQL-LEELLAPPTLAAVSFFSLTMS 278 (278)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~-~~~~~~P~ti~~i~g~~iG~~ 278 (278)
+...+++++++|.+...+|. +|++|||||+|+|+|++||++
T Consensus 221 ~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai 262 (408)
T KOG2722|consen 221 QVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAI 262 (408)
T ss_pred ceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcc
Confidence 22235677888999999998 999999999999999999985
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=4.7e-31 Score=250.59 Aligned_cols=153 Identities=34% Similarity=0.663 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGIL 89 (278)
Q Consensus 10 a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~l 89 (278)
++++++++++++++||+++ |+|++++++.+.+|++++++++|||+|++++++.+.+++.++|++++...+.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhhhh
Q 023742 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (278)
Q Consensus 90 g~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~ll~ 169 (278)
+|++.|++|.++++++.+..+|+++|++++|+|++.++ ||+ +|+.|++++.++++++.|++|+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999 663 89999999999999999999999999
Q ss_pred cchhhHHh
Q 023742 170 QSSVRYKA 177 (278)
Q Consensus 170 ~~~~~~~~ 177 (278)
..+++.++
T Consensus 147 ~~~~~~~~ 154 (385)
T PF03547_consen 147 SRSEKEDK 154 (385)
T ss_pred cccccccc
Confidence 87765543
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.86 E-value=1.4e-20 Score=175.93 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHH-HHHHHHHHHHHHHHHHH
Q 023742 7 FEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLE-EIISWWFMPVNVAMTFL 84 (278)
Q Consensus 7 ~~~a~~~vl~Vflii~vG~~l-a~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~-~l~~~w~~~v~~~l~~l 84 (278)
++..+..++++++++++||++ + |+|+++++..+.+|++++|+++||++|++++++ +.+ .....+...+...+.++
T Consensus 3 ~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 3 TYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTT-LADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 566779999999999999999 8 999999999999999999999999999999986 222 23333344444556677
Q ss_pred HHHHHHHHHHH-HhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhh---HHHHHHHHHHhhHHH
Q 023742 85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVG---LSYASFSMALGGFFI 160 (278)
Q Consensus 85 ig~~lg~lv~r-i~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~G---l~Y~s~~~~v~~il~ 160 (278)
..++++|.+.| .+|.++++++.+..+++++|+||+|+|++.++ ||+ +| +.|+..+...+.++.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~~ 146 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLMT 146 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchhH
Confidence 77889999998 77888889999999999999999999999999 774 44 788889999999999
Q ss_pred Hhhhhhhhh
Q 023742 161 WSYSYQLIK 169 (278)
Q Consensus 161 wT~g~~ll~ 169 (278)
||+|+.+.+
T Consensus 147 ~~~~~~~~~ 155 (321)
T TIGR00946 147 IALGLFLVS 155 (321)
T ss_pred HHHHHHHhc
Confidence 999987654
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=99.83 E-value=8.6e-20 Score=170.75 Aligned_cols=152 Identities=23% Similarity=0.370 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 023742 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (278)
Q Consensus 7 ~~~a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig 86 (278)
+...+.+++|+++++++||+++ |.+.++++..+.+|++++|+++|||+|++++++. .+...++..+...... .++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~-~~~~~~~~~~~~~~~~-~~~~ 77 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATAD-LSGLADLGLIVASLVA-TLLA 77 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCC-cchhhhHHHHHHHHHH-HHHH
Confidence 3567789999999999999999 9999999999999999999999999999999983 3333455555544444 4444
Q ss_pred HHHHHHHHH-HhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhh
Q 023742 87 GILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY 165 (278)
Q Consensus 87 ~~lg~lv~r-i~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~ 165 (278)
.++++++.| .++.++++++.+..+.+|+|+||+|+|+...+ ||+ +|++|+++++.++++.+|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~ 144 (311)
T COG0679 78 FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGV 144 (311)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHH
Confidence 444555554 56777777889999999999999999999998 884 8999999999999999999999
Q ss_pred hhhhcchhhH
Q 023742 166 QLIKQSSVRY 175 (278)
Q Consensus 166 ~ll~~~~~~~ 175 (278)
.++...++..
T Consensus 145 ~~l~~~~~~~ 154 (311)
T COG0679 145 ILLARSGGGT 154 (311)
T ss_pred HHHHHhcCCc
Confidence 9887776544
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.81 E-value=8.1e-19 Score=163.98 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (278)
Q Consensus 9 ~a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~ 88 (278)
..+..++|+|+++++||+++ |++++++++.|.+|++++|+++||++|++++++ +.++...-|...+...+.++++++
T Consensus 4 ~~~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK09903 4 FFIGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFF 80 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44577899999999999999 999999999999999999999999999999986 666665334445666777788888
Q ss_pred HHHHHHH-HhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhh
Q 023742 89 LGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQL 167 (278)
Q Consensus 89 lg~lv~r-i~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~l 167 (278)
++|++.| ..|.++++++.....++++|+||+|+|++.++ ||++. ..|+.|+..+ .+++++.|++|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~---~~~~~~a~~~-~~~~~~~~~~g~~~ 149 (314)
T PRK09903 81 FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV---STGLVVAIIS-IIVNAITIPIGLYL 149 (314)
T ss_pred HHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh---hhhhHHHHHH-HHHHHHHHHHHHHH
Confidence 8888876 45767677788888999999999999999999 77521 0256666654 46899999999998
Q ss_pred hhcc
Q 023742 168 IKQS 171 (278)
Q Consensus 168 l~~~ 171 (278)
++..
T Consensus 150 ~~~~ 153 (314)
T PRK09903 150 LNPS 153 (314)
T ss_pred Hccc
Confidence 8753
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.78 E-value=0.031 Score=51.90 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHH
Q 023742 72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASF 151 (278)
Q Consensus 72 ~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~ 151 (278)
.|.+.+..++..++++++||+++|.+|.++++++.....++..|++ +++++.... |+. + -..-...|...
T Consensus 194 ~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~ 263 (286)
T TIGR00841 194 GPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLI 263 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHH
Confidence 3445556677888999999999999999988888888999999999 888888776 552 1 12224456666
Q ss_pred HHHHhhHHHH
Q 023742 152 SMALGGFFIW 161 (278)
Q Consensus 152 ~~~v~~il~w 161 (278)
++..+.++.+
T Consensus 264 ~~~~~~~~a~ 273 (286)
T TIGR00841 264 YALFQLAFAL 273 (286)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.17 E-value=0.65 Score=44.12 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhh
Q 023742 77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (278)
Q Consensus 77 v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~al 127 (278)
...++..++++.+||.++|.+|.+++++.....+++..|.+ +++++..+.
T Consensus 250 ~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~-lai~lA~~~ 299 (328)
T TIGR00832 250 IPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFE-LAIAVAISL 299 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHH-HHHHHHHHh
Confidence 34567788999999999999999999999999999998875 556666555
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=93.23 E-value=1.9 Score=41.06 Aligned_cols=76 Identities=21% Similarity=0.176 Sum_probs=53.6
Q ss_pred HHHHhHHHHHHHhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHh
Q 023742 48 FTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (278)
Q Consensus 48 f~VflP~LIFs~la~~vt~~~l~~~w-~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~a 126 (278)
=...+=+.++..++.. .++....- .+.+.+.+.-.+++.+||..+|.++.+++++..+..+++..|.|. +.++..+
T Consensus 199 s~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l-g~alA~~ 275 (319)
T COG0385 199 SVLSILLIVYAAFSAA--VENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL-GAALAAA 275 (319)
T ss_pred hHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH-HHHHHHh
Confidence 3344555566666554 22332222 344566778889999999999999999999999999999999874 5555554
No 9
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=90.82 E-value=3 Score=39.31 Aligned_cols=106 Identities=16% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhccCCCChhh--HHHHHHHHHHHHhHHHHHHHhcccCC---HHH--HHHHHHHHHHHHHHHHHHHHH
Q 023742 17 VLLISVLGALMATQYWNLLTADA--RRSLNKMVFTVFTPSLMFASLAKTVT---LEE--IISWWFMPVNVAMTFLIGGIL 89 (278)
Q Consensus 17 Vflii~vG~~la~~r~~iL~~~~--~k~Lsklvf~VflP~LIFs~la~~vt---~~~--l~~~w~~~v~~~l~~lig~~l 89 (278)
+++=..+|-+++ |. +++-. .|..-+.+-...+-.++++++.+++. .++ ......+....+....+++.+
T Consensus 167 vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 242 (313)
T PF13593_consen 167 VLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVL 242 (313)
T ss_pred HHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333345576666 22 22211 13334444556666777777655421 111 122223333445566666778
Q ss_pred HHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhh
Q 023742 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (278)
Q Consensus 90 g~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~al 127 (278)
+|...|.++.+++++....+| +...+.-+++|++..+
T Consensus 243 ~~~~~r~~~~~~~d~iA~~F~-gs~Ksl~~gvpl~~~l 279 (313)
T PF13593_consen 243 GWLAARLLGFSRPDRIAVLFC-GSQKSLALGVPLASIL 279 (313)
T ss_pred HHHHHhhcCCChhhEEEEEEE-cCcCcchhHHHHHHHH
Confidence 999999999999888777654 4577788999999988
No 10
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.96 E-value=4.8 Score=38.82 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhccCCCChhhH---HHHHHHHHHHHhHHHHH-HHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 023742 17 VLLISVLGALMATQYWNLLTADAR---RSLNKMVFTVFTPSLMF-ASLAKTVTLEEIISWW--FMPVNVAMTFLIGGILG 90 (278)
Q Consensus 17 Vflii~vG~~la~~r~~iL~~~~~---k~Lsklvf~VflP~LIF-s~la~~vt~~~l~~~w--~~~v~~~l~~lig~~lg 90 (278)
...++.+|.+++ ..|+++++.. +...|++.+.+++.+++ -.++.+ +++++.+.. ...+.++.+.+...+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 346777888888 9999997765 45555666666666665 456554 888888754 22333334444445567
Q ss_pred HHHHHHhcCCCCchhHhhh--hhccCCcchhH
Q 023742 91 WIVVKLLRPKPHLEGLVIA--TCASGNLGNLL 120 (278)
Q Consensus 91 ~lv~ri~r~p~~~~~~~i~--~~~fgN~gnLp 120 (278)
+++.|+++.=+-+...... ++..|.+|++.
T Consensus 284 ~lvGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 284 AFLGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 7999999866555554433 23345555554
No 11
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=88.60 E-value=15 Score=35.71 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHH----HHHHHHHHHHHHHH
Q 023742 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF----MPVNVAMTFLIGGI 88 (278)
Q Consensus 13 ~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~----~~v~~~l~~lig~~ 88 (278)
-+-+++++..+|.+++ ..|+++.+....+.+.+...++|..++--+-+. |++++.+... +.+...+.+++|..
T Consensus 24 ~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4445678889999999 999995445567788888888888888777665 6666654333 23334456666666
Q ss_pred HHHHHHHHhcCCCCchhHhh-hhhccCCcchh
Q 023742 89 LGWIVVKLLRPKPHLEGLVI-ATCASGNLGNL 119 (278)
Q Consensus 89 lg~lv~ri~r~p~~~~~~~i-~~~~fgN~gnL 119 (278)
+++.+.+..--|+.++..-. ..+-.|-+.|+
T Consensus 101 va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~ 132 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNF 132 (378)
T ss_pred HHHHHHhhcccchHHHHHHHHHhcccCchhHH
Confidence 66665554312333443322 23334444554
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=72.62 E-value=97 Score=30.12 Aligned_cols=134 Identities=18% Similarity=0.267 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHh-hccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMAT-QYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (278)
Q Consensus 15 l~Vflii~vG~~la~-~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv 93 (278)
..+.....+|...+. +.++.+ .....+..+..|+| |..++...++.++.+-..+.++.++...+-.++-+++
T Consensus 241 ~~il~~tt~~l~~~~~~~~~~l--~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATSFPPFRKLL--RGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHhccchhhcC--CchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777776652 233333 35567787777764 5667666688888884445555666677777788889
Q ss_pred HHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhh
Q 023742 94 VKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQL 167 (278)
Q Consensus 94 ~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~l 167 (278)
.|++|.|.+ ....++-.|.|-=.- .++++.. +| ++ =..-|+....+..++++.+=+..|+.+
T Consensus 314 ~kl~k~~l~----~~~vAS~AnIGGpaT--A~a~A~a----~~-~~-Lv~pgvL~gvlGyaiGty~G~~va~~l 375 (378)
T PF05684_consen 314 GKLFKIDLF----ELLVASNANIGGPAT--APAVAAA----KG-PS-LVPPGVLMGVLGYAIGTYLGLAVAQLL 375 (378)
T ss_pred HHHHCCCHH----HHHHHhhcccCCcch--HHHHHHh----cC-Cc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997753 223344555554433 3333322 34 11 123577778888888887777777654
No 13
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=70.56 E-value=52 Score=27.06 Aligned_cols=80 Identities=9% Similarity=0.117 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV 94 (278)
Q Consensus 15 l~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ 94 (278)
+-+++++.+..++. |+|++++++.+.+.-- -....|-.+--+-.|++ ...+..-|...+..+...++++++--++.
T Consensus 38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW-~aMYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLA--KRGHLPQVTQFGVGFW-SAMYIPIVVAMAAGQNV-VAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChhHHhHHHHH-HccHhHHHHHHhhhchh-HHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999 9999999988877533 23456766554444543 33444445555555666666666655666
Q ss_pred HHhc
Q 023742 95 KLLR 98 (278)
Q Consensus 95 ri~r 98 (278)
|+-|
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 6554
No 14
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=64.92 E-value=35 Score=30.06 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=67.6
Q ss_pred HHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhccc-CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023742 21 SVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKT-VTLEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLR 98 (278)
Q Consensus 21 i~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~-vt~~~l~~~-w~~~v~~~l~~lig~~lg~lv~ri~r 98 (278)
..+|+++. +....+-+....+++...++.+= ++--++.++ ...+++.+. |...+..+.+.+-+.+.++++.+++.
T Consensus 5 li~Gi~lG--~~~~~~~~~~~~~~~~~L~lLLF-~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 5 LILGILLG--YFLRPPFSLIDKISTYALYLLLF-LVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLG 81 (191)
T ss_pred HHHHHHHH--HHhcccccccccHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555 43333322223455555544332 223455554 456666633 33333334444444445666777774
Q ss_pred CCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhhhh
Q 023742 99 PKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (278)
Q Consensus 99 ~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~ll~ 169 (278)
.+ .+.....+++||=...=+.-+.+ + +|. +.| ..+.+.+..-.++..-..+.+.|
T Consensus 82 ~~--~~~~lav~sG~GwYSlsg~~i~~-~-------~~~-----~~G-~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 82 LS--LKESLAVASGFGWYSLSGVLITQ-L-------YGP-----ELG-TIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred CC--HHHHHHHHccCcHHHhHHHHHHh-h-------hCH-----HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 45555566667655544544433 2 221 233 56777888888877777777777
No 15
>PRK11281 hypothetical protein; Provisional
Probab=64.62 E-value=2.3e+02 Score=31.75 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=24.8
Q ss_pred HHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023742 46 MVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (278)
Q Consensus 46 lvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~r~ 99 (278)
....+.+|.++.+.++...+.+...+. +.-++..+.+.+++|++.+.+|.
T Consensus 625 ~~~~~~~pl~~~~~~~~~~~~~~~~d~----lg~~~~i~~~~~~~~~~~~~~~~ 674 (1113)
T PRK11281 625 RLSLALLPLLFWSVVAELSPLGLADDV----IGQAVIIIALALIAFLVWPLCRE 674 (1113)
T ss_pred HHHHHHHHHHHHHHHHhhCchhhhhhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 334577888888777765332322221 11111122333455666677654
No 16
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=64.37 E-value=1e+02 Score=32.86 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=63.4
Q ss_pred ccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhh
Q 023742 31 YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIAT 110 (278)
Q Consensus 31 r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~ 110 (278)
|-+-++..-...+..+++.+++|+.+...-.++ +...+..|+.....+..+.+.-.+.....+..+|.|.+ ..+..+
T Consensus 295 ~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~-di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~--~~l~l~ 371 (769)
T KOG1650|consen 295 HGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT-DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPLR--DSLALG 371 (769)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccce-eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh--HHHHHH
Confidence 445555567778999999999999998887776 66677775555555555555555555666677787764 345555
Q ss_pred hccCCcchhHHHHHHhh
Q 023742 111 CASGNLGNLLLIIVPAI 127 (278)
Q Consensus 111 ~~fgN~gnLpl~ii~al 127 (278)
..+.+=|.+-+.....-
T Consensus 372 ~lm~~kgl~el~~~~~~ 388 (769)
T KOG1650|consen 372 LLMSTKGLVELIVLNTG 388 (769)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 55666666666655443
No 17
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=64.08 E-value=81 Score=32.27 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC----CChhh------------HHHHHHHHHHHHhHHHHHHHhcccCC---HHHHH
Q 023742 10 ASMPIVQVLLISVLGALMATQYWNL----LTADA------------RRSLNKMVFTVFTPSLMFASLAKTVT---LEEII 70 (278)
Q Consensus 10 a~~~vl~Vflii~vG~~la~~r~~i----L~~~~------------~k~Lsklvf~VflP~LIFs~la~~vt---~~~l~ 70 (278)
.-+|++-+|+++++||++. |.++ |+.-+ .-.+...+-.+++=..+|+ +.-..- ++++.
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~-vG~~~Gp~Ff~~l~ 84 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFA-IGYEVGPQFFASLK 84 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-hhhccCHHHHHHHH
Confidence 4578999999999999999 6554 22100 0113333334444333333 221111 33444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHH
Q 023742 71 S-WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (278)
Q Consensus 71 ~-~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ 122 (278)
+ -|...+.+++..+.+.++.|.+.+++..+... ..-+++.+..|+--|+-+
T Consensus 85 ~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~-~~Gl~aGalT~tp~l~aA 136 (562)
T TIGR03802 85 KDGLREIILALVFAVSGLITVYALAKIFGLDKGT-AAGLAAGGLTQSAVIGTA 136 (562)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHhchhhccHHHHHH
Confidence 3 35556666778888888999999999887553 334456677888777766
No 18
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=62.59 E-value=1.3e+02 Score=28.97 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHhhhh----hccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhh
Q 023742 82 TFLIGGILGWIVVKLLRPKPHLEGLVIAT----CASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGG 157 (278)
Q Consensus 82 ~~lig~~lg~lv~ri~r~p~~~~~~~i~~----~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~ 157 (278)
...+..++|..+.+++..++. .+....+ ...|..+.++ +..... || -+.+.+-|++++.+.+..+.
T Consensus 103 ~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~g-~~fe~~-------~G-~~~a~~vg~a~AT~Glv~G~ 172 (368)
T PF03616_consen 103 LAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAFG-PTFEEL-------YG-WEGATSVGMAAATFGLVVGG 172 (368)
T ss_pred HHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHHH-HHHHHh-------cC-hhhhHHHHHHHHHHHHHHHH
Confidence 344556677777777766543 4443221 2223333344 222222 44 24566789999999998887
Q ss_pred HHHHhhhhhhhhcchh
Q 023742 158 FFIWSYSYQLIKQSSV 173 (278)
Q Consensus 158 il~wT~g~~ll~~~~~ 173 (278)
++==-++-+++|++..
T Consensus 173 liGgpi~~~lirk~~~ 188 (368)
T PF03616_consen 173 LIGGPIANWLIRKGKL 188 (368)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 7755567777777753
No 19
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=62.27 E-value=54 Score=31.46 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=57.8
Q ss_pred ccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 023742 31 YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW----WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGL 106 (278)
Q Consensus 31 r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~----w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~ 106 (278)
..|+++ .......-+-+-.+|++|+--+-|- +.+++.+. .++.+.+..+.++|+.+++.+.|-+..+-.+.+-
T Consensus 47 t~Glfs--~~S~~y~~v~n~llpamI~lmLlqc-d~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ksf~gd~Wka~g 123 (384)
T COG5505 47 TVGLFS--VESPVYDTVWNYLLPAMIPLMLLQC-DVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLLKSFIGDLWKAGG 123 (384)
T ss_pred hccccc--ccCcHHHHHHHHHHHHHHHHHHHHc-cHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhcchHHhhhh
Confidence 578885 5556677788888999999888774 77777654 3444555667777777777777765543333344
Q ss_pred hhhhhccCCcchh
Q 023742 107 VIATCASGNLGNL 119 (278)
Q Consensus 107 ~i~~~~fgN~gnL 119 (278)
.+.++-.|-+.||
T Consensus 124 mi~gSytGGSaNm 136 (384)
T COG5505 124 MISGSYTGGSANM 136 (384)
T ss_pred heeeeeeCCcchH
Confidence 5556666766776
No 20
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=60.24 E-value=21 Score=36.21 Aligned_cols=147 Identities=17% Similarity=0.206 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV 94 (278)
Q Consensus 15 l~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ 94 (278)
+.+.+++.+|...+ +|.|.++.--+|.+.+.-=+..+|..+|..+-..+. .+..-.-++|+. -.+.
T Consensus 91 LG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~------------a~if 156 (508)
T PRK11339 91 LGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMG------------ALIF 156 (508)
T ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHH------------HHHH
Confidence 34445555555554 388999988888888887788888888877765531 122222223322 2222
Q ss_pred HHhcCCCCchhH--hhhhhccCCcchhHH----HHHHhhhhcCCCCCCC-cchhhhhhHHHHHHHHHHhhHHHHhhhhhh
Q 023742 95 KLLRPKPHLEGL--VIATCASGNLGNLLL----IIVPAICHEQGSPFGN-RDVCSSVGLSYASFSMALGGFFIWSYSYQL 167 (278)
Q Consensus 95 ri~r~p~~~~~~--~i~~~~fgN~gnLpl----~ii~alc~~~~~pFG~-~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~l 167 (278)
+-.+++ ..-|. ..++++.|.++|+-. |+...+..+...-.+. .+.--..+..|...+..+-.+..|-+..++
T Consensus 157 ~a~Gr~-PlaGia~~fagvs~GfsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~N~~F~~~s~~vl~~v~~~vt~k~ 235 (508)
T PRK11339 157 LAVGRH-PVAGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMASSVVVLTIVGGLITDKI 235 (508)
T ss_pred HHcCCC-hHHHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHhcCCCcccCccccHHHHHHHHHHHHHHHHHHhhhe
Confidence 323222 12222 234666788888877 6666665543110100 011112345666667777777777778888
Q ss_pred hhcchhhHH
Q 023742 168 IKQSSVRYK 176 (278)
Q Consensus 168 l~~~~~~~~ 176 (278)
++|..+.|+
T Consensus 236 vePrlg~~~ 244 (508)
T PRK11339 236 IEPRLGQWQ 244 (508)
T ss_pred eCCCCCccc
Confidence 876655443
No 21
>PRK04972 putative transporter; Provisional
Probab=58.43 E-value=2.2e+02 Score=29.13 Aligned_cols=162 Identities=9% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC----CChh----------------hHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHH
Q 023742 12 MPIVQVLLISVLGALMATQYWNL----LTAD----------------ARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS 71 (278)
Q Consensus 12 ~~vl~Vflii~vG~~la~~r~~i----L~~~----------------~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~ 71 (278)
.|++.+|+.+++||++. |.++ |+.. ....+..+-+.+|+=|.=..+=.+- .+.+.+
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~~~Gp~F--~~~l~~ 87 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNF--FSIFFR 87 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhhhhHHH--HHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHH
Q 023742 72 -WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYAS 150 (278)
Q Consensus 72 -~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s 150 (278)
-|...+..++..+++.++++.+.|+++.+.. ...-+.+.+..|+--|+-. ..++-+..-.|=.....-.+-.++|+.
T Consensus 88 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~aGa~T~tp~l~~a-~~~~~~~~~~~~~~~~~~~~~~vgYa~ 165 (558)
T PRK04972 88 DGKNYLMLALVMVGSALVIALGLGKLFGWDIG-LTAGMLAGSMTSTPVLVGA-GDTLRHSGAESRQLSLALDNLSLGYAL 165 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHhhccccCcHHHHHH-HHHHhccCccccchhcccCccchhHHh
Q ss_pred HHHHHh-hHHHHhhhhhhhhcchhhHHhhh
Q 023742 151 FSMALG-GFFIWSYSYQLIKQSSVRYKALA 179 (278)
Q Consensus 151 ~~~~v~-~il~wT~g~~ll~~~~~~~~~~~ 179 (278)
.|-... .++++..-...+.+-+-+-++.+
T Consensus 166 ~y~~g~i~~i~~~~~~p~l~ridl~~e~~~ 195 (558)
T PRK04972 166 TYLIGLVSLIVGARYLPKLQHQDLQTSAQQ 195 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
No 22
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=58.15 E-value=47 Score=31.64 Aligned_cols=104 Identities=22% Similarity=0.294 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWIV 93 (278)
Q Consensus 15 l~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~-~~l~~lig~~lg~lv 93 (278)
+-.++=+.+|.++. . +|+|.|+.+.+-.- +.+|.+-| .+...++++++.+-.+.-+. .+++++++....++.
T Consensus 172 v~~llP~iiG~iLG--N---LD~~~r~fl~~~~~-~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~ 244 (314)
T PF03812_consen 172 VAALLPIIIGMILG--N---LDPDFRKFLAPGVP-ILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLA 244 (314)
T ss_pred HHHHHHHHHHHHHh--c---CCHHHHHHHhcCCC-eeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHH
Confidence 33344456787877 2 69999988887654 66776666 47778899999876654433 344556666677888
Q ss_pred HHHhcCCCCchhHhhhhhccCCcchhHHHHHHh
Q 023742 94 VKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (278)
Q Consensus 94 ~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~a 126 (278)
-|+.+..+...+. ..++..||..--|-.+.++
T Consensus 245 dr~i~~~~g~aG~-A~sstAGnavatPaaiA~~ 276 (314)
T PF03812_consen 245 DRLILKGNGVAGA-AISSTAGNAVATPAAIAAA 276 (314)
T ss_pred HHHHcCCCCceee-hHHhhhhhhhhhhHHHHHh
Confidence 8875433333343 4578889999988887764
No 23
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=57.52 E-value=1.4e+02 Score=29.71 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=55.9
Q ss_pred ccCCCCh---hhHHHHHHHHHHHHhHHHHHH-HhcccCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 023742 31 YWNLLTA---DARRSLNKMVFTVFTPSLMFA-SLAKTVTLEEIISWWFMP--VNVAMTFLIGGILGWIVVKLLRPKPHLE 104 (278)
Q Consensus 31 r~~iL~~---~~~k~Lsklvf~VflP~LIFs-~la~~vt~~~l~~~w~~~--v~~~l~~lig~~lg~lv~ri~r~p~~~~ 104 (278)
-.|++|+ ++.++++|++.+-++|.+++- .++- .+++++.+..-.. +.++.+.+...+-++++.|+++.-+-+.
T Consensus 286 ~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~-~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEs 364 (414)
T PF03390_consen 286 AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAY-TDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVES 364 (414)
T ss_pred HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 6788885 456788999999999988875 3433 3777776543222 2233444444456788899998766655
Q ss_pred hHhhh--hhccCCcchh
Q 023742 105 GLVIA--TCASGNLGNL 119 (278)
Q Consensus 105 ~~~i~--~~~fgN~gnL 119 (278)
..... ++..|.+|++
T Consensus 365 AItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 365 AITAGLCMANMGGTGDV 381 (414)
T ss_pred HHHhhhcccCCCCCCcc
Confidence 55544 2334555665
No 24
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=57.31 E-value=1e+02 Score=25.36 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV 94 (278)
Q Consensus 15 l~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ 94 (278)
+-+++++.+..++. |+|.+++++.+.+.-- -....|-.+--+-.|++ ...+..-+...+..+...++++++--++.
T Consensus 38 iAMlLLI~~~~~l~--k~g~l~~~te~Gi~FW-~amYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQ--KKGLLSKPTEQGIEFW-SAMYIPIVVAMAAQQNV-VAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChHHHhHHHHH-HccHHHHHHHHhhhhhh-HHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999 9999999988877533 23556766554444443 22333333334444555555555555555
Q ss_pred HHh
Q 023742 95 KLL 97 (278)
Q Consensus 95 ri~ 97 (278)
|+-
T Consensus 114 r~g 116 (125)
T PF03817_consen 114 RIG 116 (125)
T ss_pred hcC
Confidence 543
No 25
>PRK01658 holin-like protein; Validated
Probab=52.11 E-value=70 Score=26.13 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=31.3
Q ss_pred CCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q 023742 33 NLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLIGGI-LGWIVVKLLR 98 (278)
Q Consensus 33 ~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l-~~~w~~~v~~~l~~lig~~-lg~lv~ri~r 98 (278)
+++.+.+.-.+ +----.|.|+-+-.--+- +.+ .++|.+.+..++++++..+ .||..-++.|
T Consensus 53 ~~v~~~a~~Ll-~~m~llFVPa~VGi~~~~----~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~ 115 (122)
T PRK01658 53 KWIELGAETLL-AELPLFFIPSAVGVMNYG----DFLSSKGISLFLVVVISTFVVMIVTGYLTQLLAK 115 (122)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhhHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333 333447888876543322 223 3555566666666665555 4555555454
No 26
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=51.97 E-value=2.3e+02 Score=27.29 Aligned_cols=132 Identities=18% Similarity=0.128 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHhHHHHH---HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 18 LLISVLGALMATQYWNL-LTADARRSLNKMVFTVFTPSLMF---ASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (278)
Q Consensus 18 flii~vG~~la~~r~~i-L~~~~~k~Lsklvf~VflP~LIF---s~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv 93 (278)
.+...+|.+.+.-|.++ +|+..-|.+|=+ .+=+.=| ..+.++ .+.+ -++.+....++..++-...-.++
T Consensus 3 vLFF~LG~~A~~~kSdL~iP~~i~k~lsiy----LLlaIGlkGG~~l~~~-~~~~--~~~~~~~~~~lg~liPl~~~~iL 75 (327)
T PF05982_consen 3 VLFFILGIIAALLKSDLEIPEAIYKFLSIY----LLLAIGLKGGVELAHS-GLTA--LLLPLLAAVLLGILIPLIAFPIL 75 (327)
T ss_pred hHHHHHHHHHHHHcCCCcCChhHHHHHHHH----HHHHHhcccHHHHHcC-CHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445565554335555 666555544432 2222222 122332 2222 12223333334444443333444
Q ss_pred HHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhhh
Q 023742 94 VKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (278)
Q Consensus 94 ~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~ll 168 (278)
.|+.|.++.+...+.+ -||-..--=+....+..+..+.+|+ .|...++++...=-=-.|..+.
T Consensus 76 r~~~~l~~~daaAiAA--hYGSVSavTF~~a~~~L~~~gi~ye----------g~m~a~~alME~PAIival~L~ 138 (327)
T PF05982_consen 76 RRLGKLDRADAAAIAA--HYGSVSAVTFAAALAFLESQGISYE----------GYMVALLALMESPAIIVALLLA 138 (327)
T ss_pred HHccCCChhhHHHHHH--HcCchHHHHHHHHHHHHHHCCCCcc----------ccHHHHHHHHhhhHHHHHHHHH
Confidence 4556777777666544 3666655555556666666777776 4555555554443333444443
No 27
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=51.79 E-value=3.4e+02 Score=29.27 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhcc
Q 023742 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW---WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS 113 (278)
Q Consensus 37 ~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~---w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~f 113 (278)
.+-...+..++..+|+|....+. +-.+++..+.+. +.+.+..++.++.=.+-+++.+++++.|.+.. +..+...
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~v-Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~ea--l~lG~lm 389 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAIS-GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREG--ITLGFLM 389 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 34455677788889999876654 334466665432 22222223333333344567777787665432 2223333
Q ss_pred CCcchhHHHHHH
Q 023742 114 GNLGNLLLIIVP 125 (278)
Q Consensus 114 gN~gnLpl~ii~ 125 (278)
.--|-+.+.+..
T Consensus 390 ~~kG~~~Lii~~ 401 (832)
T PLN03159 390 NTKGLVEMIVLN 401 (832)
T ss_pred hcccHHHHHHHH
Confidence 333555555543
No 28
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=51.32 E-value=1.1e+02 Score=28.25 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023742 40 RRSLNKMVFTVFTPSLMFASLAKTVTLEE----IISWWFMPVNVAMTFLIGGILGWIVVKLLR 98 (278)
Q Consensus 40 ~k~Lsklvf~VflP~LIFs~la~~vt~~~----l~~~w~~~v~~~l~~lig~~lg~lv~ri~r 98 (278)
++.-.++.|.+.+|+.+-..+.+-.+..+ ..++....+..+.+++.+++.-+.+.|+.|
T Consensus 179 r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~ 241 (259)
T PF02673_consen 179 REEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLK 241 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999999999998876432111 233333444445555555555555555554
No 29
>COG3329 Predicted permease [General function prediction only]
Probab=50.52 E-value=2.4e+02 Score=27.17 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=56.0
Q ss_pred CChHHHHHHHHH--HHHHHHHHHHHHHHHHhhccCC-CChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHH-HHHHH
Q 023742 1 MGFWTFFEVASM--PIVQVLLISVLGALMATQYWNL-LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS-WWFMP 76 (278)
Q Consensus 1 m~~~~l~~~a~~--~vl~Vflii~vG~~la~~r~~i-L~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~-~w~~~ 76 (278)
|++++.|+..+. -.-|.++....|.+.+.-|.++ +|+...+.|+ ...+-|.=|+.=.+ +...++.. ..++.
T Consensus 1 ~d~ls~fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGve-ir~snl~a~v~~~~ 75 (372)
T COG3329 1 MDMLSEFLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVE-IRNSNLTAMVLPVA 75 (372)
T ss_pred CchHHHHHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhccccee-eecCCcchhHHHHH
Confidence 677777776532 1234455556676665434444 5554444333 23333333332111 12222322 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCC
Q 023742 77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFG 136 (278)
Q Consensus 77 v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG 136 (278)
+.+.+.+++..+.-+++.|+.+.+..++... +.-||...---+.-..+..++.+..|+
T Consensus 76 ~~~aL~~li~~ia~f~l~kl~~vdtvdaaA~--ag~yGsvS~~Tfaaa~t~Lee~giaye 133 (372)
T COG3329 76 LGVALGFLIVFIAYFLLRKLPKVDTVDAAAT--AGTYGSVSAVTFAAAVTFLEESGIAYE 133 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchHHHHHH--HhhccchhHHHHHHHHHHHHHcCccHH
Confidence 3334444444444444444444444444333 233554443334444444455555554
No 30
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=49.88 E-value=90 Score=29.75 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 023742 18 LLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPV-NVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 18 flii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v-~~~l~~lig~~lg~lv~ri 96 (278)
++=+.+|+++. . +|+|.|+.+++-. .+..|.+-| .+...++++++.+-.+.-+ ..++++++.....++.-|+
T Consensus 175 ilPlliG~ilG--N---LD~~~r~fl~~~~-~~lIpFf~F-aLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~ 247 (314)
T TIGR00793 175 VLPFLVGFALG--N---LDPELRDFFSKAV-QTLIPFFAF-ALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKF 247 (314)
T ss_pred HHHHHHHHHHh--c---CCHHHHHHhccCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHH
Confidence 33356788877 2 6888888887754 356666655 4777789999877644332 2355667777888888998
Q ss_pred hcCCCCchhHhhhhhccCCcchhHHHHHHh
Q 023742 97 LRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (278)
Q Consensus 97 ~r~p~~~~~~~i~~~~fgN~gnLpl~ii~a 126 (278)
+...+...++ ..++..||..--|-.+.++
T Consensus 248 ~~g~~g~aG~-A~sstAGnAvatPaavA~a 276 (314)
T TIGR00793 248 IGGGDGTAGI-AASSSAGAAVATPVLIAEM 276 (314)
T ss_pred hcCCCCchhh-HHHHHHHHhhhhHHHHHHh
Confidence 7422333343 4567789998888777653
No 31
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.56 E-value=28 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 023742 77 VNVAMTFLIGGILGWIVVKLLRP 99 (278)
Q Consensus 77 v~~~l~~lig~~lg~lv~ri~r~ 99 (278)
.++++..++|.++|+++.|+.+.
T Consensus 9 ~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 9 EYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHcch
Confidence 35578889999999999998753
No 32
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=46.67 E-value=52 Score=27.28 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=35.2
Q ss_pred ccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 023742 31 YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMP-VNVAMTFLIGGILGWIVVKLLR 98 (278)
Q Consensus 31 r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~-v~~~l~~lig~~lg~lv~ri~r 98 (278)
|..++.+.+.--++.+.+ .|.|+-+-.--+.+ .- -.++|.+. +.+.-+.+.....||.+-++.|
T Consensus 52 ~l~wv~~~a~~Ll~~m~l-lFVPa~VgVm~y~~--~l-~~~~~~Il~~~iiST~lv~~vtg~~~~~l~~ 116 (128)
T COG1380 52 KLEWVERGATFLLRNMAL-LFVPAGVGVMNYFD--LL-AADGLPILVVIIISTLLVLLVTGWVVQLLIR 116 (128)
T ss_pred cHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445565655555555555 89998876543333 11 12333344 3444555555567887777654
No 33
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.90 E-value=19 Score=29.56 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 023742 79 VAMTFLIGGILGWIVVKLLRPK 100 (278)
Q Consensus 79 ~~l~~lig~~lg~lv~ri~r~p 100 (278)
+++++++|+++|+++.|+....
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 5778899999999999987544
No 34
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=43.49 E-value=2e+02 Score=32.26 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=26.2
Q ss_pred HHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023742 47 VFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (278)
Q Consensus 47 vf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~r~ 99 (278)
...+..|.++...+....+.+...+ .+.-++..+.+++++|+..+++|.
T Consensus 605 ~~~~~~pl~~~~~~~~~~~~~~~~~----~lgr~~~i~~~~~l~~~~~~~~~~ 653 (1109)
T PRK10929 605 SIGLIVPLIMALITFDNLNDREFSG----TLGRLCFILLCGALSLVTLSLKRA 653 (1109)
T ss_pred HHHHHHHHHHHHHHHhhCchhhhhc----cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467888888766665433333332 112233334445566776676654
No 35
>PRK01844 hypothetical protein; Provisional
Probab=43.17 E-value=45 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 72 ~w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
.|...+.++++.++|.+.|++++|.
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556678889999999988874
No 36
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=43.01 E-value=3.5e+02 Score=26.88 Aligned_cols=105 Identities=16% Similarity=0.228 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhhccCCCChhhHHHHHHHH-----HHHHhHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 023742 18 LLISVLGALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTLEEIIS--WWFMPVNVAMTFLIGGILG 90 (278)
Q Consensus 18 flii~vG~~la~~r~~iL~~~~~k~Lsklv-----f~VflP~LIFs~la~~vt~~~l~~--~w~~~v~~~l~~lig~~lg 90 (278)
++.+.+..++. +.|++|++..+..+++. .+.+.-|||--++-.- +-+-+.+ ..++| ..+...+.+.+++
T Consensus 63 il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm-~RklLika~~r~~p-~il~g~~~a~~~g 138 (414)
T PF03390_consen 63 ILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGM-NRKLLIKAFARFIP-PILGGVIGAFLLG 138 (414)
T ss_pred HHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 44555666777 89999999999888876 5788889998887653 3333322 12333 3356666666777
Q ss_pred HHHHHHhcCCCCchhHh--hhhhccCC-cchhHHHHHHh
Q 023742 91 WIVVKLLRPKPHLEGLV--IATCASGN-LGNLLLIIVPA 126 (278)
Q Consensus 91 ~lv~ri~r~p~~~~~~~--i~~~~fgN-~gnLpl~ii~a 126 (278)
.++..++..+..+.-++ +...+=|| .|-+|+..+.+
T Consensus 139 ~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya 177 (414)
T PF03390_consen 139 GLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYA 177 (414)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHH
Confidence 77777776554433222 22333343 57789888764
No 37
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.98 E-value=45 Score=24.87 Aligned_cols=25 Identities=20% Similarity=0.529 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 72 ~w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
.|...+.+.++.++|.+.|++++|-
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark 27 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARK 27 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555577788888999999888863
No 38
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=41.91 E-value=3.8e+02 Score=26.97 Aligned_cols=37 Identities=32% Similarity=0.635 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHH
Q 023742 2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVF 48 (278)
Q Consensus 2 ~~~~l~~~a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf 48 (278)
|||+++-.+ +|+-++...||.+| + .+...|.|.++.=
T Consensus 53 GfW~LL~F~----MQM~LilvtG~~lA--~----sp~v~r~l~~lA~ 89 (453)
T PF02667_consen 53 GFWSLLAFA----MQMALILVTGYALA--S----SPPVKRLLDRLAS 89 (453)
T ss_pred cHHHHHHHH----HHHHHHHHHHHHHh--C----ChHHHHHHHHHHh
Confidence 455555333 57778889999999 3 4555677777654
No 39
>PRK03818 putative transporter; Validated
Probab=41.31 E-value=4.1e+02 Score=27.18 Aligned_cols=50 Identities=20% Similarity=0.073 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHH
Q 023742 72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (278)
Q Consensus 72 ~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ 122 (278)
-|.+.+..++.++++.+++|++.++++.+.. ...-+.+.+..|+--|+-.
T Consensus 90 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~aGa~T~tp~l~aa 139 (552)
T PRK03818 90 GLRLNLFAVLIVILGGLVTAILHKLFGIPLP-VMLGIFSGAVTNTPALGAG 139 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHhhccccccHHHHHH
Confidence 3445556677777888889999888998765 3333445556666656554
No 40
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=40.43 E-value=3.2e+02 Score=26.09 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMP-VNVAMTFLIGGILGWIV 93 (278)
Q Consensus 15 l~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~-v~~~l~~lig~~lg~lv 93 (278)
..+.+=+.+|.+++ . ++++.++.+.+=+- +.+|..+| .+.-+++++++.+.++-. +..++...+...+++++
T Consensus 167 v~lilpILiGmilG--N---ld~~~~~~l~~Gi~-f~I~f~~f-~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 167 VAALLPLVLGMILG--N---LDPDMRKFLTKGGP-LLIPFFAF-ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred HHHHHHHHHHHHHh--c---cchhhHHHHhccce-EeHHHHHH-HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 33455567787777 3 45555555554432 24444433 366678999998775544 44566777888899999
Q ss_pred HHHhcCCCCchhHhhhhhccCCcchhHHHHHH
Q 023742 94 VKLLRPKPHLEGLVIATCASGNLGNLLLIIVP 125 (278)
Q Consensus 94 ~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~ 125 (278)
.|++|.+++. + ...++..||..-=|-.+..
T Consensus 240 ~rllg~~~~~-g-~li~stAGnAIcgpAAVaA 269 (312)
T PRK12460 240 DRLVGGTGIA-G-AAASSTAGNAVATPLAIAA 269 (312)
T ss_pred HHHhCCChhH-H-HHHHHHhhHHHHHHHHHHH
Confidence 9999755543 2 2234447776555554443
No 41
>PRK11677 hypothetical protein; Provisional
Probab=40.01 E-value=31 Score=28.85 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 023742 78 NVAMTFLIGGILGWIVVKLLRPK 100 (278)
Q Consensus 78 ~~~l~~lig~~lg~lv~ri~r~p 100 (278)
.+++++++|+++|+++.|+....
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccch
Confidence 34678899999999999986533
No 42
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=40.00 E-value=3.4e+02 Score=26.07 Aligned_cols=96 Identities=15% Similarity=0.233 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCCh---------hhHHHHH-HHHHHHHhHHH---HHHHhcccC--
Q 023742 4 WTFFEVASMPIVQVLL----ISVLGALMATQYWNLLTA---------DARRSLN-KMVFTVFTPSL---MFASLAKTV-- 64 (278)
Q Consensus 4 ~~l~~~a~~~vl~Vfl----ii~vG~~la~~r~~iL~~---------~~~k~Ls-klvf~VflP~L---IFs~la~~v-- 64 (278)
.+-+.+.+++++|+.. +++++..+. . +..++ +....+. +..|...+|.| |-.++++..
T Consensus 16 ~~~lm~gis~miP~ivagGll~ai~~~~~--~-~~~~~~~~~~~~~~~~l~~~g~~~~f~~m~pvla~~Ia~Sia~k~g~ 92 (346)
T TIGR01427 16 YKHLLTGVSYMLPFVVAGGIIIAISFLFG--I-NAANNTGGNFNDLANWLMQIGGGVAFALMVPILAGYIAYSIADRPGL 92 (346)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHhc--c-cccCcccccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCcCC
Confidence 3456677788888774 446665554 2 12222 1334555 66788789999 999998873
Q ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---Hhc--CCCCch
Q 023742 65 TLEEIISWWFMPVNV----AMTFLIGGILGWIVVK---LLR--PKPHLE 104 (278)
Q Consensus 65 t~~~l~~~w~~~v~~----~l~~lig~~lg~lv~r---i~r--~p~~~~ 104 (278)
.+.-+.. .+.... +...+.+.+.+|++.+ ++| .|+..+
T Consensus 93 ~pG~i~G--~~~~~~~~GflGgII~gilag~~~~~lek~ikK~lP~~l~ 139 (346)
T TIGR01427 93 APGMIAG--LIANNFNSGFLGGIIAGFLAGYVVKGLQKYIKKKLPQSLR 139 (346)
T ss_pred cHHHHHH--HHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 4433332 222221 4556666677786654 344 566655
No 43
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=39.89 E-value=2.7e+02 Score=28.11 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHH
Q 023742 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73 (278)
Q Consensus 17 Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w 73 (278)
....+.+|.+++ .....+. ...=..+++.+++|.++|..=.+ ++.+++.+.|
T Consensus 25 ~v~lil~Gi~lg--~~~~~~~--~~~~~~~~~~~~Lp~lLF~~g~~-~~~~~l~~~~ 76 (525)
T TIGR00831 25 PIALILAGLLLG--LAGLLPE--VPLDREIVLFLFLPPLLFEAAMN-TDLRELRENF 76 (525)
T ss_pred HHHHHHHHHHHH--hccccCC--CCCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 345666677776 2222110 00112456789999999987665 4788877655
No 44
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=38.94 E-value=2.9e+02 Score=28.63 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHhhccCCCChhh--HH---HHHHHHHHHHhHHHHHHHhcccCCHHH
Q 023742 3 FWTFFEVASMPIVQVLLIS----VLGALMATQYWNLLTADA--RR---SLNKMVFTVFTPSLMFASLAKTVTLEE 68 (278)
Q Consensus 3 ~~~l~~~a~~~vl~Vflii----~vG~~la~~r~~iL~~~~--~k---~Lsklvf~VflP~LIFs~la~~vt~~~ 68 (278)
+++.+...+.|++|++.-. ++..++. ..++++++. -. .+++ .++.|+|.++-.+.++.+....
T Consensus 99 ~~~~is~if~PiIP~l~a~Gll~gl~~ll~--~~g~~~~~s~~~~~l~~i~~-a~f~fLPiliays~Ak~~~~np 170 (610)
T TIGR01995 99 LIDLISGVFTPLLPALAGAGLLKAVLTLLT--MTGLISADSQTYQILNAMGD-AVFYFLPILLAITAAKRFKVNP 170 (610)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--hccccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCh
Confidence 3456666788888876433 3344444 567776532 12 2233 4567999999999998764333
No 45
>PRK05326 potassium/proton antiporter; Reviewed
Probab=38.51 E-value=2e+02 Score=29.11 Aligned_cols=55 Identities=13% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHH
Q 023742 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF 74 (278)
Q Consensus 17 Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~ 74 (278)
++.....|..++ +......+..+...+.+-+++.|. +|..++-.+++.++.+.++
T Consensus 247 ~la~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~ 301 (562)
T PRK05326 247 FLAVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIAL 301 (562)
T ss_pred HHHHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHH
Confidence 445566787777 444334444445555555677765 6777777777777765443
No 46
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=38.40 E-value=3.4e+02 Score=25.39 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 40 RRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 40 ~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
|+.-.++.|....|+++-.+..+-.+..+..+-.-.+ ...+.++..++.++++.|.
T Consensus 184 r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~-~l~vg~i~AFvv~~~~I~~ 239 (270)
T COG1968 184 REAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLP-ILLVGFIVAFVVSLIAIKF 239 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998876643322222211112 1133444455555555544
No 47
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=38.37 E-value=1.3e+02 Score=25.24 Aligned_cols=57 Identities=9% Similarity=-0.106 Sum_probs=28.7
Q ss_pred CCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 023742 34 LLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLIGGIL-GWIVVK 95 (278)
Q Consensus 34 iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l-~~~w~~~v~~~l~~lig~~l-g~lv~r 95 (278)
++.+.+.-.++.+. -.|.|+-+-.--+- +.+ .++|.+.+..++++++..+. ||.+-+
T Consensus 57 ~v~~~a~~LL~~m~-LfFVPagVGim~~~----~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 57 QVESLGTALTNNIG-FLFVPSGISVINSL----GVMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HHHHHHHHHHHHHH-HHHhhhHhHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333343333 47888876543322 233 35566666666666665553 454433
No 48
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=37.95 E-value=2.8e+02 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccc
Q 023742 40 RRSLNKMVFTVFTPSLMFASLAKT 63 (278)
Q Consensus 40 ~k~Lsklvf~VflP~LIFs~la~~ 63 (278)
|+.-.++.|.+.+|+++-..+.+-
T Consensus 179 r~~Aa~fSFllsiP~i~gA~~l~l 202 (255)
T TIGR00753 179 RKAAAEFSFLLAIPIMFGAGLLSL 202 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999998887653
No 49
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=37.74 E-value=3.9e+02 Score=25.89 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhh
Q 023742 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (278)
Q Consensus 79 ~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~al 127 (278)
..+.+.+...++++..|..+.|.++..... -++.+|.--+-+++.-++
T Consensus 253 l~iy~~~~~~i~~~i~k~lgl~y~~~~~~~-ft~aSNnfeLAiAvAi~l 300 (342)
T COG0798 253 LLIYFLLMFFISYFIAKALGLPYEDAAALV-FTGASNNFELAIAVAIAL 300 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChhhhhcee-eeeccccHHHHHHHHHHh
Confidence 356677778889999999998877655432 334445444555555555
No 50
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=37.45 E-value=3.7e+02 Score=25.57 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023742 45 KMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (278)
Q Consensus 45 klvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~ 102 (278)
+-...+..|.++...++...+.+...+ .+.-+...+.+..++++..+++|+..+
T Consensus 130 ~~~~~~~~pl~~~~~~~~~~~~~~~~d----~LGrl~~ii~~~~l~~~~~~l~~~~~~ 183 (340)
T PF12794_consen 130 RWLIWVLVPLLFISIFAENLPDGLARD----VLGRLAFIILLLLLAVFLWRLLRPGWG 183 (340)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhh----hHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 345568899999999988755555554 223344445555677888888765433
No 51
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=36.23 E-value=2.7e+02 Score=26.38 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHhcccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCch-hHhhh
Q 023742 58 ASLAKTVTLEEII----SWWFMPVNVAMTFLIGGILGWIVVKLL-RPKPHLE-GLVIA 109 (278)
Q Consensus 58 s~la~~vt~~~l~----~~w~~~v~~~l~~lig~~lg~lv~ri~-r~p~~~~-~~~i~ 109 (278)
..++-+.+.+|+. +++.+.+..+..+++.=+++|.+++++ +.++..+ |+++.
T Consensus 54 f~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv 111 (328)
T TIGR00832 54 YPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILL 111 (328)
T ss_pred HHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444556677765 456666777788888889999999975 7666543 44433
No 52
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=35.68 E-value=3.8e+02 Score=25.23 Aligned_cols=143 Identities=11% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhc-cCCCChhh---HHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 023742 16 QVLLISVLGALMATQY-WNLLTADA---RRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGILG 90 (278)
Q Consensus 16 ~Vflii~vG~~la~~r-~~iL~~~~---~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~-~~v~~~l~~lig~~lg 90 (278)
.+++=+.+|..++ . .--.++.. .+.-+|...++-.=+ ++-+++++++.+... ..+...+.......++
T Consensus 28 ~~~~AillG~~i~--n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL-----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~ 100 (305)
T PF03601_consen 28 ALLIAILLGMLIG--NLFFGLPARFKPGIKFSSKKLLRLGIVL-----LGFRLSFSDILALGWKGLLIIIIVVILTFLLT 100 (305)
T ss_pred HHHHHHHHHHHHh--hhccCCcHHHHhHHHHHHHHHHHHHHHH-----HCccccHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 3445566676666 3 11123332 333334555443322 344567888887766 3444566777777788
Q ss_pred HHHH-HHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhhhh
Q 023742 91 WIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (278)
Q Consensus 91 ~lv~-ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~ll~ 169 (278)
+.+. |++|.|++..-.. +|+.+=+|.=-+.-+..+.+-+ ++-....++-+.++..+ .++++.+-.+.+.
T Consensus 101 ~~lg~r~~~l~~~~~~Li--a~GtsICG~SAi~A~a~~i~a~-------~~~~a~ava~V~lfg~v-am~~~P~l~~~l~ 170 (305)
T PF03601_consen 101 YWLGRRLFGLDRKLAILI--AAGTSICGASAIAATAPVIKAK-------EEDVAYAVATVFLFGTV-AMFLYPLLGHALG 170 (305)
T ss_pred HHHHHHHhCCCHHHHHHH--HhhcccchHHHHHHHcccccCC-------CCceeeeehHHHHHHHH-HHHHHHHHHHHhC
Confidence 8888 9999987644333 3333333332222222222111 11122333434444433 2455556666666
Q ss_pred cchhhH
Q 023742 170 QSSVRY 175 (278)
Q Consensus 170 ~~~~~~ 175 (278)
-++..+
T Consensus 171 l~~~~~ 176 (305)
T PF03601_consen 171 LSPQQF 176 (305)
T ss_pred CCHHHH
Confidence 655544
No 53
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=35.52 E-value=3.7e+02 Score=27.55 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHH
Q 023742 44 NKMVFTVFTPSLMFASLAKTVTLEEIIS-WWFMPVNVAMTFLIGGI 88 (278)
Q Consensus 44 sklvf~VflP~LIFs~la~~vt~~~l~~-~w~~~v~~~l~~lig~~ 88 (278)
..+.+.+++|.++|..=... +.+++.+ ++.+...+.+.+++..+
T Consensus 65 ~~lf~~~~LPpIlFe~g~~l-~~~~f~~n~~~Il~lAv~Gvlit~~ 109 (559)
T TIGR00840 65 SSYFFLYLLPPIVLDAGYFM-PQRNFFENLGSILIFAVVGTLINAF 109 (559)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999876664 6667665 45555555544444443
No 54
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=34.76 E-value=4.1e+02 Score=25.84 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhccCC---CChhhHHHHHHHHHHHHhHHHHHHHh-ccc-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 15 VQVLLISVLGALMATQYWNL---LTADARRSLNKMVFTVFTPSLMFASL-AKT-VTLEEIISWWFMPVNVAMTFLIGGIL 89 (278)
Q Consensus 15 l~Vflii~vG~~la~~r~~i---L~~~~~k~Lsklvf~VflP~LIFs~l-a~~-vt~~~l~~~w~~~v~~~l~~lig~~l 89 (278)
.+++.+..+|-+++ -.|+ +.+.+++.+.+++. +|+=-.+-.+. +++ ++++.+.-...=.+...+.++.|.+.
T Consensus 213 ~pLig~Lm~Gnl~r--Esgv~~rLs~taqn~l~nivT-i~LGl~vGat~~a~~fL~~~tl~I~~LGl~Af~~~tagGvl~ 289 (360)
T PF03977_consen 213 APLIGMLMFGNLLR--ESGVVERLSKTAQNELMNIVT-IFLGLTVGATMTAETFLNPQTLKILVLGLVAFAFSTAGGVLF 289 (360)
T ss_pred HHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHhcCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56777888899988 7777 44566666666554 44444444444 223 35555543222223334555555566
Q ss_pred HHHHHHHhc
Q 023742 90 GWIVVKLLR 98 (278)
Q Consensus 90 g~lv~ri~r 98 (278)
++++..+.|
T Consensus 290 ~k~mn~f~k 298 (360)
T PF03977_consen 290 AKLMNLFSK 298 (360)
T ss_pred HHHHHHHhC
Confidence 666666553
No 55
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=34.75 E-value=3.2e+02 Score=27.35 Aligned_cols=84 Identities=23% Similarity=0.207 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhH--HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 12 MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTP--SLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGIL 89 (278)
Q Consensus 12 ~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP--~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~l 89 (278)
.=.+|+.++..-||.+| . .+-.+|.|+++.-..-.| +.++..+ ...-.-.+|-.+..++|.++
T Consensus 56 ~F~MQM~lilvtG~~lA--~----sp~v~r~l~~la~~p~t~~~ai~~v~~---------vs~~~s~inWG~gLV~gall 120 (438)
T TIGR00366 56 GFGMQMALILVTGYALA--Y----SPIVYKLLKTIASLPKTPKQAVALVTF---------IGSIACWINWGFGLVVGAIF 120 (438)
T ss_pred HHHHHHHHHHHHHHHHh--c----CHHHHHHHHHHHhCCCCCCceeehHHH---------HHHHHHHHHHhHHHHHHHHH
Confidence 33467888999999999 3 455677888776533333 1122222 11111122333444555555
Q ss_pred HHHHHHHhcCCCCchhHhhhhhc
Q 023742 90 GWIVVKLLRPKPHLEGLVIATCA 112 (278)
Q Consensus 90 g~lv~ri~r~p~~~~~~~i~~~~ 112 (278)
+.-++|-. ++-+.+..+++..
T Consensus 121 Are~Ar~~--~~vdY~lliAaaY 141 (438)
T TIGR00366 121 AREVARRV--KGSDYPLLIACAY 141 (438)
T ss_pred HHHHHHhc--cCCCHHHHHHHHH
Confidence 55555433 3445556555543
No 56
>PF06691 DUF1189: Protein of unknown function (DUF1189); InterPro: IPR009574 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.
Probab=34.74 E-value=3.4e+02 Score=24.34 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhccc
Q 023742 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKT 63 (278)
Q Consensus 14 vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~ 63 (278)
.+.++++..+|.+++..++..++ -+..=+++.|..+++.++..+...
T Consensus 176 fi~v~i~A~ig~i~~~~~~~~ls---y~~~~ki~~yA~TlP~ll~~i~~~ 222 (250)
T PF06691_consen 176 FILVLILALIGLIIAKIMKRKLS---YKQLWKISIYAITLPTLLFAIIGL 222 (250)
T ss_pred HHHHHHHHHHHHHHHHhccCCcc---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888732233333 456666666666666666655554
No 57
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=33.27 E-value=3e+02 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHh
Q 023742 38 DARRSLNKMVFTVFTPSLMFASL 60 (278)
Q Consensus 38 ~~~k~Lsklvf~VflP~LIFs~l 60 (278)
|++..++.+.+-+++-.|+++.+
T Consensus 72 DsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 72 DSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHHH
Confidence 36889999999888888888877
No 58
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=32.87 E-value=4.6e+02 Score=25.38 Aligned_cols=94 Identities=16% Similarity=0.303 Sum_probs=58.4
Q ss_pred ccCCCChhhHHHHHHHH-----HHHHhHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 023742 31 YWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTLEEIIS--WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHL 103 (278)
Q Consensus 31 r~~iL~~~~~k~Lsklv-----f~VflP~LIFs~la~~vt~~~l~~--~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~ 103 (278)
+.|++|++..+..+++. .|.+.-|||--++-.- +-+-+.+ ..++| ..++..+.+.+++.++..++..+..+
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m-~Rk~Lik~~~r~~p-~il~g~~~a~~~g~lvG~l~G~~~~~ 82 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGM-NRKLLLKALMRFIP-PALIGMVLAVIVGILVGTLFGLGFDH 82 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 67899999998888853 5788899999888653 3233322 11333 23556666666777777777655443
Q ss_pred hhHh--hhhhccCC-cchhHHHHHHh
Q 023742 104 EGLV--IATCASGN-LGNLLLIIVPA 126 (278)
Q Consensus 104 ~~~~--i~~~~fgN-~gnLpl~ii~a 126 (278)
.-++ +...+=|| .|-+|+..+.+
T Consensus 83 ~~~~i~lPIm~GG~GaGavPLS~~Y~ 108 (347)
T TIGR00783 83 SLMYIVMPIMAGGVGAGIVPLSIIYS 108 (347)
T ss_pred hhheeeehhcCCCcccchhhHHHHHH
Confidence 3222 22333344 67889988776
No 59
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=32.66 E-value=4e+02 Score=24.82 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccc
Q 023742 40 RRSLNKMVFTVFTPSLMFASLAKT 63 (278)
Q Consensus 40 ~k~Lsklvf~VflP~LIFs~la~~ 63 (278)
|+.-.++.|.+..|+++-..+.+-
T Consensus 185 r~~Aa~fSFllsiP~i~gA~~l~~ 208 (276)
T PRK12554 185 REAAARFSFLLAIPAVFGAGLLEL 208 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999998887664
No 60
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=32.33 E-value=3e+02 Score=22.98 Aligned_cols=64 Identities=14% Similarity=0.390 Sum_probs=35.7
Q ss_pred hHHHHHHHhcccCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchh
Q 023742 52 TPSLMFASLAKTVTLEEIISWWFMP-VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL 119 (278)
Q Consensus 52 lP~LIFs~la~~vt~~~l~~~w~~~-v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnL 119 (278)
+=+.+-+++.+. +++++.++|... +..+++.+++.+.+|++.|+.+.|.. ....+++=|-..-|
T Consensus 56 iG~~iG~~f~~~-~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~---ta~La~~PGGl~~m 120 (156)
T TIGR03082 56 IGILIGSRFTRE-VLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPL---TAFLATSPGGASEM 120 (156)
T ss_pred HHHHHHccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHhCCchHHHH
Confidence 333344444333 455566666533 44466677778889999998875543 33344444444433
No 61
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.33 E-value=29 Score=27.39 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=11.0
Q ss_pred HHHHHHHHhhcC
Q 023742 266 TLAAVSFFSLTM 277 (278)
Q Consensus 266 ti~~i~g~~iG~ 277 (278)
|||+|+|||.|.
T Consensus 33 ti~aiVg~i~Gf 44 (101)
T KOG4112|consen 33 TIGAIVGFIYGF 44 (101)
T ss_pred HHHHHHHHHHHH
Confidence 899999999985
No 62
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.98 E-value=86 Score=22.08 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 73 WFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 73 w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
+++.+..++++++|+++||++...
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLP 41 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888888888877654
No 63
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=29.83 E-value=81 Score=32.13 Aligned_cols=146 Identities=17% Similarity=0.235 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 16 QVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVK 95 (278)
Q Consensus 16 ~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~r 95 (278)
.+++++.+|+..+ +|.|.++.--+|.+.|.==+..+|..+|..+-..+. .+..-.-++|+.+ .+.+
T Consensus 88 g~vlv~mlGvGva-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a------------~if~ 153 (513)
T TIGR00819 88 GAILALLLGAGIA-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGA------------LIFH 153 (513)
T ss_pred HHHHHHHHHHHHH-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHH------------HHHH
Confidence 3344444454444 389999998888898887788888888776655521 1222222233322 2222
Q ss_pred HhcCCCCchhH--hhhhhccCCcchhHHH----HHHhhhhcCCCCCC-CcchhhhhhHHHHHHHHHHhhHHHHhhhhhhh
Q 023742 96 LLRPKPHLEGL--VIATCASGNLGNLLLI----IVPAICHEQGSPFG-NRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (278)
Q Consensus 96 i~r~p~~~~~~--~i~~~~fgN~gnLpl~----ii~alc~~~~~pFG-~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~ll 168 (278)
-.++++ .-|. .-++++.|.++|+-+. +...+..+...-.+ +.+.--..+..|...+..+-.+..|-|.-++.
T Consensus 154 a~Gr~P-laGia~~fagvs~GFsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~n~~F~~~s~~vl~~v~~~vt~Kv~ 232 (513)
T TIGR00819 154 ALGRHP-LAGLAAAFAGVGCGFSANLFIGTIDPLLAGISQEAAAAFHPDMHVGPEANWFFMAASTFVIAIIGGFITDKII 232 (513)
T ss_pred HcCCCh-HHHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHhcCCCcccCccccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 232221 2222 2235556666655222 22222222100000 00011123566666777777777777888888
Q ss_pred hcchhhHH
Q 023742 169 KQSSVRYK 176 (278)
Q Consensus 169 ~~~~~~~~ 176 (278)
+|....|+
T Consensus 233 ePrl~~~~ 240 (513)
T TIGR00819 233 EPQLGPWQ 240 (513)
T ss_pred CCCCCCCC
Confidence 77665554
No 64
>PRK01821 hypothetical protein; Provisional
Probab=28.85 E-value=2.4e+02 Score=23.38 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHHHHHhHHHHHHHhcccCCHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Q 023742 45 KMVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLIGGI-LGWIVVKLLR 98 (278)
Q Consensus 45 klvf~VflP~LIFs~la~~vt~~~l-~~~w~~~v~~~l~~lig~~-lg~lv~ri~r 98 (278)
+----.|.|+-+-.--+- +.+ .++|.+.+..++++++..+ .||..-++.|
T Consensus 69 ~~m~LfFVPa~VGim~~~----~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~~ 120 (133)
T PRK01821 69 RYMALLFVPIGVGVMQYY----DLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVHG 120 (133)
T ss_pred HHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333347888876543322 233 3555566666666666655 4555554443
No 65
>PRK00523 hypothetical protein; Provisional
Probab=28.46 E-value=1.1e+02 Score=22.99 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 73 WFMPVNVAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 73 w~~~v~~~l~~lig~~lg~lv~ri 96 (278)
|...+.+++..++|.+.|++++|.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567788899999988874
No 66
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=27.32 E-value=3.5e+02 Score=22.17 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHH-----HHhHHHHHHHhcccCCHHHHHHHHHHH
Q 023742 2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFT-----VFTPSLMFASLAKTVTLEEIISWWFMP 76 (278)
Q Consensus 2 ~~~~l~~~a~~~vl~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~-----VflP~LIFs~la~~vt~~~l~~~w~~~ 76 (278)
++.+-+...+...+---++.++..++- .+.+|++....+...... -..|..+-....+....++-.......
T Consensus 62 sf~~a~~~g~~~~~ia~li~~v~~~i~---~~~IdP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (163)
T PF13858_consen 62 SFGQAFKVGFLISLIAGLISAVFQYIY---FNYIDPDFFENYIEAQIEEMKESGSNPEMIEEQIEQELEMKESFSPFSLA 138 (163)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHcccCHhhHHHHHHHHHHHHHhcCcHHHH
Confidence 455555554444333333333332222 456677776666666654 122322221111111000000111122
Q ss_pred H-HHHHHHHHHHHHHHHHHHHhc
Q 023742 77 V-NVAMTFLIGGILGWIVVKLLR 98 (278)
Q Consensus 77 v-~~~l~~lig~~lg~lv~ri~r 98 (278)
. ...-....|.+++.+++-++|
T Consensus 139 ~~~~~~~l~~G~i~sli~a~i~k 161 (163)
T PF13858_consen 139 FSGFISNLIFGFIISLIIALILK 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 344556666667777776665
No 67
>COG0679 Predicted permeases [General function prediction only]
Probab=27.18 E-value=4.4e+02 Score=24.50 Aligned_cols=93 Identities=12% Similarity=0.178 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 023742 16 QVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAM--TFLIGGILGWIV 93 (278)
Q Consensus 16 ~Vflii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l--~~lig~~lg~lv 93 (278)
|.+.-..+|+.++ ..|+--++....--+..=....|+-++.- +-+...........-.+.... =.++.-+++|.+
T Consensus 169 P~i~a~i~g~~~~--~~~i~lP~~~~~~~~~l~~a~~pl~li~l-G~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 169 PLIIALILGLLLN--LLGISLPAPLDTAVDLLASAASPLALIAL-GLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred cHHHHHHHHHHHH--HcCCCCcHHHHHHHHHHHHhhhhHHHHHH-hhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666 55664444555555556667777766541 111111111111111112222 355666677777
Q ss_pred HHHhcCCCCchhHhhhhh
Q 023742 94 VKLLRPKPHLEGLVIATC 111 (278)
Q Consensus 94 ~ri~r~p~~~~~~~i~~~ 111 (278)
.++++.+.....+.+...
T Consensus 246 ~~~~~l~~~~~~v~vl~~ 263 (311)
T COG0679 246 AKLLGLSGLALQVLVLLS 263 (311)
T ss_pred HHHcCCChHHHHHHHHHh
Confidence 777777777666665554
No 68
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.86 E-value=52 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 023742 6 FFEVASMPIVQVLLISVLGALMATQYWNL 34 (278)
Q Consensus 6 l~~~a~~~vl~Vflii~vG~~la~~r~~i 34 (278)
.|+.++...+-+.+.+++||+.. |+-+
T Consensus 3 t~lltFg~Fllvi~gMsiG~I~k--rk~I 29 (77)
T COG2991 3 TFLLTFGIFLLVIAGMSIGYIFK--RKSI 29 (77)
T ss_pred cHHHHHHHHHHHHHHHhHhhhee--cccc
Confidence 46666777777888899999988 6655
No 69
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=26.82 E-value=6.1e+02 Score=25.19 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHhhccCCCChhhHHHHHHHH-----HHHHhHHHHHHHhcccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023742 25 ALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLR 98 (278)
Q Consensus 25 ~~la~~r~~iL~~~~~k~Lsklv-----f~VflP~LIFs~la~~vt~~~l~~~-w~~~v~~~l~~lig~~lg~lv~ri~r 98 (278)
.++. ..|+++++..+..+++- .|.+.+||+.-++-.- +-+.+.+- --+..-.++.++...+.|.++.-++.
T Consensus 87 a~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgm-nRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G 163 (438)
T COG3493 87 AYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGM-NRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFG 163 (438)
T ss_pred HHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445 67899999999988874 6899999999887542 22222221 11111224444555555666666665
Q ss_pred CCCCchh--HhhhhhccCC-cchhHHHHHHh
Q 023742 99 PKPHLEG--LVIATCASGN-LGNLLLIIVPA 126 (278)
Q Consensus 99 ~p~~~~~--~~i~~~~fgN-~gnLpl~ii~a 126 (278)
.+..+.- ..+...+-|| .|-+|+..+.+
T Consensus 164 ~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs 194 (438)
T COG3493 164 LSFQDTMMYVVLPIMGGGMGAGAVPLSEIYS 194 (438)
T ss_pred CChHHeeeeEEeeeccCCCCCCcccHHHHHH
Confidence 4443221 1122222233 36688887764
No 70
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=26.76 E-value=5.2e+02 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccc
Q 023742 40 RRSLNKMVFTVFTPSLMFASLAKT 63 (278)
Q Consensus 40 ~k~Lsklvf~VflP~LIFs~la~~ 63 (278)
|+.-.++.|-+..|+++-..+.+-
T Consensus 183 r~~Aa~fSFLlsiPai~gA~~l~~ 206 (268)
T PRK00281 183 REAAAEFSFLLAIPAMLGASLLDL 206 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999998887654
No 71
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=26.39 E-value=8.6e+02 Score=26.40 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhccCCCChhhH---HHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHH
Q 023742 17 VLLISVLGALMATQYWNLLTADAR---RSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPV 77 (278)
Q Consensus 17 Vflii~vG~~la~~r~~iL~~~~~---k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v 77 (278)
.++..++|+++...-.+++++... ..+.--+..+.+...+|..=.+ ++...+...|..+.
T Consensus 41 ~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~-L~~~~Lrr~wrsV~ 103 (810)
T TIGR00844 41 SMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVE-LPRKYMLKHWVSVT 103 (810)
T ss_pred HHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHhHHHHH
Confidence 456677777776333466776532 1222225566777777764433 57777877665553
No 72
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=26.34 E-value=98 Score=28.86 Aligned_cols=84 Identities=19% Similarity=0.250 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHH-HHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhhH
Q 023742 80 AMTFLIGGILGW-IVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (278)
Q Consensus 80 ~l~~lig~~lg~-lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~i 158 (278)
.+.++.|..+|. .+.++-|..-+||. ++.+....|.....+.++.+-. +|. -+..|.++..++-.....
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~-fi~~~~~~gi~~~~l~~~~~~~------~g~---~~~~~~~~f~I~~Fl~G~ 216 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKP-FIHFIISLGIVFFVLSIVVVYF------VGP---GNAAGFAFFYIFGFLAGF 216 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHH------hCc---chHHHHHHHHHHHHHHHH
Confidence 455666777774 44454454444444 4445555566666666555321 332 123456666677777888
Q ss_pred HHHhhhhhhhhcchh
Q 023742 159 FIWSYSYQLIKQSSV 173 (278)
Q Consensus 159 l~wT~g~~ll~~~~~ 173 (278)
+.|.+---++.-+.|
T Consensus 217 f~WgiQ~ViL~lPhE 231 (267)
T PF07672_consen 217 FLWGIQGVILNLPHE 231 (267)
T ss_pred HHHhhhHHHhcChhh
Confidence 999888777776654
No 73
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=26.31 E-value=3.3e+02 Score=25.71 Aligned_cols=57 Identities=19% Similarity=0.434 Sum_probs=32.8
Q ss_pred HhcccCC---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcch
Q 023742 59 SLAKTVT---LEEIISWWFMP-VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGN 118 (278)
Q Consensus 59 ~la~~vt---~~~l~~~w~~~-v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gn 118 (278)
.++.++| .+++.+||... +..+.+.+++.+.+|++.|..+.+.. .-..++.=|-...
T Consensus 37 ~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~---TA~~~~~PGg~s~ 97 (318)
T PF05145_consen 37 SIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRA---TAFFASMPGGLSE 97 (318)
T ss_pred HHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh---HHHHHcCCccHHH
Confidence 3444444 45566666544 33456667777788888888765543 3344554444333
No 74
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=26.23 E-value=3.7e+02 Score=22.13 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----cCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Q 023742 7 FEVASMPIVQVLLISVLGALMATQY----WNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMT 82 (278)
Q Consensus 7 ~~~a~~~vl~Vflii~vG~~la~~r----~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~ 82 (278)
+.....+.+-++.+.++..+..+.+ .+.+.+-.+-.|+..+....+=..+|+...-.. .+++ ..+...+.+++.
T Consensus 55 ~~~~~~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~GrmaLT~Yi~qsii~~~lf~~~~l~l-~~~~-~~~~~~~~~~~i 132 (163)
T PF04235_consen 55 LYMLGGPLLALGYVALLILLCQKRPRQRLLRPLAAVGRMALTNYILQSIIGTLLFYGYGLGL-FGHL-SPAQSLLIALGI 132 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccc-cccc-cHHHHHHHHHHH
Confidence 3334455566666666666665322 234666778899999999888888886554331 1111 112233344445
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 023742 83 FLIGGILGWIVVKLLRPK 100 (278)
Q Consensus 83 ~lig~~lg~lv~ri~r~p 100 (278)
+++..+++.+-.|.+|..
T Consensus 133 ~~~q~~~s~~W~~~f~~G 150 (163)
T PF04235_consen 133 WVVQLLFSYLWLRRFRRG 150 (163)
T ss_pred HHHHHHHHHHHHHhcCcC
Confidence 555566666666666643
No 75
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=25.77 E-value=6.7e+02 Score=24.93 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhccCCCChh---hHHHHHHHHHHHHhHHHHHH-HhcccCCHHHHHHHHHH--HHHHHHHHHHHHHH
Q 023742 16 QVLLISVLGALMATQYWNLLTAD---ARRSLNKMVFTVFTPSLMFA-SLAKTVTLEEIISWWFM--PVNVAMTFLIGGIL 89 (278)
Q Consensus 16 ~Vflii~vG~~la~~r~~iL~~~---~~k~Lsklvf~VflP~LIFs-~la~~vt~~~l~~~w~~--~v~~~l~~lig~~l 89 (278)
++-.|+.+=.++. ..|+++++ ..+.++++.-+=++=.|++. .++-+ +++++.+-.-. .+.++...+...+.
T Consensus 292 ~va~MIil~a~lk--~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~yt-dl~ev~~alt~~~vii~~~vVl~~i~~ 368 (438)
T COG3493 292 PVAFMIILVAILK--AANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYT-DLNEVAAALTWQNVIIALSVVLGAILG 368 (438)
T ss_pred hHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccc-cHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 3335555666776 78999865 45677777666555555543 44433 67776643221 22223333444457
Q ss_pred HHHHHHHhcCCCCchhHhhhhhccCCcc
Q 023742 90 GWIVVKLLRPKPHLEGLVIATCASGNLG 117 (278)
Q Consensus 90 g~lv~ri~r~p~~~~~~~i~~~~fgN~g 117 (278)
+|++.|+++.-+-..... ..++..|.|
T Consensus 369 ~~f~grl~~~YPVEaAI~-aglC~a~~G 395 (438)
T COG3493 369 GAFVGRLMGFYPVEAAIT-AGLCMANMG 395 (438)
T ss_pred HHHHHHHhcCCchHHHHH-HhHHhcCCC
Confidence 899999987655444443 333344444
No 76
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.74 E-value=5.3e+02 Score=23.73 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhcc----CCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023742 14 IVQVLLISVLGALMATQYW----NLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGIL 89 (278)
Q Consensus 14 vl~Vflii~vG~~la~~r~----~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~l 89 (278)
++|++--+.+|.++..++. ++++++..+.-++++....+|...=.....--+++++.+-.+..+.-=+.-+-..++
T Consensus 21 llPmlyA~iig~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~GnlGTill 100 (241)
T PF11299_consen 21 LLPMLYALIIGMALGPQKLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEFGNLGTILL 100 (241)
T ss_pred hHHHHHHHHHHHHhcchhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHhcchhhHHH
Confidence 4566656666766655455 889999999999999988888665443332236778877665554433333344455
Q ss_pred HHHHHHHhcCCCC
Q 023742 90 GWIVVKLLRPKPH 102 (278)
Q Consensus 90 g~lv~ri~r~p~~ 102 (278)
+.=++-+++..|+
T Consensus 101 aLPiAllLGlkRE 113 (241)
T PF11299_consen 101 ALPIALLLGLKRE 113 (241)
T ss_pred HhHHHHHhcccHH
Confidence 5555555665544
No 77
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=24.78 E-value=6.4e+02 Score=24.33 Aligned_cols=88 Identities=11% Similarity=0.257 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHhcCCCCchhHhh--hh
Q 023742 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPV-NVAMTFLIGGILG-WIVVKLLRPKPHLEGLVI--AT 110 (278)
Q Consensus 35 L~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v-~~~l~~lig~~lg-~lv~ri~r~p~~~~~~~i--~~ 110 (278)
+|.+..+.++.+...+|+ ..++++ +++..+.+++...+ ..++..++..+.. |+..|+++.+. .+.++ ..
T Consensus 272 id~~~i~~I~~~sL~~fl----~~alms-l~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdy--daavm~~G~ 344 (368)
T PF03616_consen 272 IDRKTIDRISGISLDLFL----AMALMS-LKLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDY--DAAVMSAGF 344 (368)
T ss_pred CCHHHHHHHHHHHHHHHH----HHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh--hHHHHhhhh
Confidence 788888888888777664 445544 47788888765332 2344555544444 44556665443 33322 22
Q ss_pred hccCCcch--hHHHHHHhhhhc
Q 023742 111 CASGNLGN--LLLIIVPAICHE 130 (278)
Q Consensus 111 ~~fgN~gn--Lpl~ii~alc~~ 130 (278)
|+++ .|- =++.-.+++|++
T Consensus 345 ~G~g-lGatp~a~anm~~v~~~ 365 (368)
T PF03616_consen 345 CGFG-LGATPNAMANMQAVTEK 365 (368)
T ss_pred hccC-CCccHHHHHHHHHHHHh
Confidence 3222 122 255666666644
No 78
>PRK02975 putative common antigen polymerase; Provisional
Probab=23.75 E-value=2.9e+02 Score=27.27 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=36.3
Q ss_pred HHHHH--hhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHH
Q 023742 24 GALMA--TQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMP 76 (278)
Q Consensus 24 G~~la--~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~ 76 (278)
|+.+- +++.++++.+......|--||.|+|+++..-+.++ +-..||+..
T Consensus 136 GfLLFkL~sYSqIFSs~VsGvaLKRFFYFfIPAmLv~yFL~~----tk~~Wl~fL 186 (450)
T PRK02975 136 GFLLFKLHSYSQIFSSEVSGVALKRFFYFFIPAMLVVYFLRQ----DSKAWLFFL 186 (450)
T ss_pred cHHhhhHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHH
Confidence 54443 34677888888899999999999999999888775 234555433
No 79
>COG4129 Predicted membrane protein [Function unknown]
Probab=23.50 E-value=5.9e+02 Score=24.38 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCc
Q 023742 78 NVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNL 116 (278)
Q Consensus 78 ~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~ 116 (278)
.=.+-+.++..++|+++.+++.|....+.+.+..+.+++
T Consensus 11 ~RtlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t 49 (332)
T COG4129 11 ARTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPT 49 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhcccCc
Confidence 335667778888898898888888766555554444444
No 80
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=23.22 E-value=2.4e+02 Score=29.16 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChhhHHH----------------HHH-----------HHHHHHhHHHHHHHhcc
Q 023742 14 IVQVLLISVLGALMATQYWNLLTADARRS----------------LNK-----------MVFTVFTPSLMFASLAK 62 (278)
Q Consensus 14 vl~Vflii~vG~~la~~r~~iL~~~~~k~----------------Lsk-----------lvf~VflP~LIFs~la~ 62 (278)
++-+.+.+..|+++.++|.+++++..... .++ +-|.+++|.+||.+-++
T Consensus 41 i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~ 116 (575)
T KOG1965|consen 41 ILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYS 116 (575)
T ss_pred HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccce
Confidence 34455667778888766666777654322 223 88999999999987765
No 81
>TIGR01183 ntrB nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB.
Probab=23.05 E-value=4.6e+02 Score=22.82 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHH
Q 023742 76 PVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVP 125 (278)
Q Consensus 76 ~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~ 125 (278)
.+...+..++|..+|.+..+.-+..+-.+......-+.+-...+|+.++-
T Consensus 27 ~~g~~ia~~ig~~lG~~~~~~~~~~~~~~p~~~~l~~iP~~~~~pl~~~~ 76 (202)
T TIGR01183 27 AVGFSIAAIIGIAVGILIGLSKFLNAALDPIFQVLRTIPPLAWLPIALAA 76 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 33444555666666666665433333344444455556666677776654
No 82
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.88 E-value=8.6e+02 Score=25.14 Aligned_cols=104 Identities=11% Similarity=0.133 Sum_probs=56.0
Q ss_pred HHHhHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhhhhccCCcchhHHHHHHhh
Q 023742 49 TVFTPSLMFASLAKTVTLEEIIS-WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (278)
Q Consensus 49 ~VflP~LIFs~la~~vt~~~l~~-~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~~~~fgN~gnLpl~ii~al 127 (278)
.+++| +.|.+++-.+++..+.+ +|.+...+++.++.=.+..++.+|+++.+.+.+. ..+....--|-+.+.+...
T Consensus 271 ~lll~-lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~--~~gl~L~~~Gef~~vl~~~- 346 (621)
T PRK03562 271 GLLLG-LFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRR--WFAVLLGQGGEFAFVVFGA- 346 (621)
T ss_pred HHHHH-HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHH--HHHHHHhccccHHHHHHHH-
Confidence 46665 67777877788877764 4444444344444445566788888887655332 2233444456677666542
Q ss_pred hhcCCCCCCCcchhhhhhHHHHHHHHHHhhHH
Q 023742 128 CHEQGSPFGNRDVCSSVGLSYASFSMALGGFF 159 (278)
Q Consensus 128 c~~~~~pFG~~~~c~~~Gl~Y~s~~~~v~~il 159 (278)
..+.+. .+ ++..+.-+..+.++|+...++
T Consensus 347 a~~~~~-i~--~~~~~~lv~~v~lS~~~tP~l 375 (621)
T PRK03562 347 AQMANV-LE--PEWAKLLTLAVALSMAATPLL 375 (621)
T ss_pred HHHCCC-CC--HHHHHHHHHHHHHHHHHHHHH
Confidence 222222 22 233444444445555544433
No 83
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=22.37 E-value=5.1e+02 Score=26.13 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHhhccCCCCh----------hhHHHHHHHHHHHHhHHHHHHHh
Q 023742 3 FWTFFEVASMPIVQVL----LISVLGALMATQYWNLLTA----------DARRSLNKMVFTVFTPSLMFASL 60 (278)
Q Consensus 3 ~~~l~~~a~~~vl~Vf----lii~vG~~la~~r~~iL~~----------~~~k~Lsklvf~VflP~LIFs~l 60 (278)
+.+-+.+.+++++|++ ++.++..++. -.++.+. ...+.+.+..|+.+.|.+.-..-
T Consensus 127 ~~~~lm~gvS~mIP~vvagGll~ai~~l~~--~~g~~~~~~~~~~~~~~~~l~~ig~a~F~fm~Pil~ayiA 196 (482)
T PRK11404 127 VMSHLMAGVSAALPFVIGGGILVALANMLV--QFGLPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIA 196 (482)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--ccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888998887 4555555554 3333321 24567778888877688876544
No 84
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=21.81 E-value=82 Score=31.81 Aligned_cols=141 Identities=19% Similarity=0.247 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023742 18 LLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLL 97 (278)
Q Consensus 18 flii~vG~~la~~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~ 97 (278)
.+...+|...| +|.|.++.--++.+++.==++.+|..+|..+..+ +..|..-.-.+|+.+.+...+ =
T Consensus 95 VLv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~-~asDaayVVlpPlaAmiF~a~-----------G 161 (516)
T COG2978 95 VLVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSH-IASDAAYVVLPPLAAMIFIAL-----------G 161 (516)
T ss_pred HHHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHH-HHhhcceeEecchHHHHHHHh-----------C
Confidence 34444555555 5899999999999999999999999999999887 345554444455543332211 1
Q ss_pred cCCCCchhHhh--hhhccCCcchhHH----HHHHhhhhcCCCC----CCCcchhhhhhHHHHHHHHHHhhHHHHhhhhhh
Q 023742 98 RPKPHLEGLVI--ATCASGNLGNLLL----IIVPAICHEQGSP----FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQL 167 (278)
Q Consensus 98 r~p~~~~~~~i--~~~~fgN~gnLpl----~ii~alc~~~~~p----FG~~~~c~~~Gl~Y~s~~~~v~~il~wT~g~~l 167 (278)
|.| ..|... +..+-|-++|+-. |+...+.++..-- |.-...| -.-|...+.++..++.|=+.-++
T Consensus 162 RHP--lAGlaaafAgvsgGfsanl~~~~~D~Ll~GfTq~AA~iidp~~~vnp~~---NwyF~~as~~vl~~i~~fvTdKi 236 (516)
T COG2978 162 RHP--LAGLAAAFAGVSGGFSANLLPGTIDPLLAGFTQPAAQIIDPSYQVNPLM---NWYFIAASVFVLTLIGWFVTDKI 236 (516)
T ss_pred CCc--HHHHHHHHhhcccccccccccCcchHHHHHhhHHHHHhcCCccccCcch---hHHHHHHHHHHHHHHHHHHhccc
Confidence 222 333322 2333445555532 3444444332110 2111111 23455666677788888888889
Q ss_pred hhcchhhHH
Q 023742 168 IKQSSVRYK 176 (278)
Q Consensus 168 l~~~~~~~~ 176 (278)
+++.-..|+
T Consensus 237 vEPRLg~~~ 245 (516)
T COG2978 237 IEPRLGPYQ 245 (516)
T ss_pred cccCCCCCC
Confidence 988644444
No 85
>PF06899 WzyE: WzyE protein; InterPro: IPR010691 This family consists of several WzyE proteins, which appear to be specific to Enterobacteria. Members of this family are described as putative ECA polymerases this has been found to be incorrect []. The function of this family is unknown.; GO: 0016021 integral to membrane
Probab=21.77 E-value=1.8e+02 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=27.4
Q ss_pred hccCCCChhhHHHHHHHHHHHHhHHHHHHHhccc
Q 023742 30 QYWNLLTADARRSLNKMVFTVFTPSLMFASLAKT 63 (278)
Q Consensus 30 ~r~~iL~~~~~k~Lsklvf~VflP~LIFs~la~~ 63 (278)
+..++++.+......|--||.++||++.--..++
T Consensus 143 ~Ysqifs~~v~gvAlkrffYffiPAmLvvyfL~~ 176 (448)
T PF06899_consen 143 SYSQIFSSDVSGVALKRFFYFFIPAMLVVYFLKQ 176 (448)
T ss_pred hHhHHHhhccccHHHHHHHHHHHHHHHHhheecc
Confidence 4556777777777888999999999998877666
No 86
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=21.68 E-value=74 Score=33.50 Aligned_cols=95 Identities=18% Similarity=0.349 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchhHhhhhhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhh
Q 023742 67 EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP--KPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSV 144 (278)
Q Consensus 67 ~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~r~--p~~~~~~~i~~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~ 144 (278)
+++-+||+..+. ++..+++..++...+. .-+.-|++ .+|+++=.-++|+.+++|..++. .|- +.-.+.
T Consensus 439 KeVP~WWf~~il-----i~s~~l~~~~~~~~~~~~q~PwWg~~-va~~ia~vf~iPigii~AtTNq~---~GL-NiitE~ 508 (761)
T KOG2262|consen 439 KEVPDWWFLAIL-----IVSLGLGLAACEGYKTQVQLPWWGLL-VACAIAFVFTIPIGIIQATTNQT---PGL-NIITEY 508 (761)
T ss_pred ccCcHHHHHHHH-----HHHHHHHhhheeeecccccCchHHHH-HHHHHHHHHhccHHHhhhhccCC---ccH-HHHHHH
Confidence 345578886644 3333445555544443 22334444 57778888889999999986543 331 222234
Q ss_pred hHHHHHHHHHHhhHHHHhhhhhhhhcc
Q 023742 145 GLSYASFSMALGGFFIWSYSYQLIKQS 171 (278)
Q Consensus 145 Gl~Y~s~~~~v~~il~wT~g~~ll~~~ 171 (278)
-+.|+.=..=+.++.+-+|||.-|+..
T Consensus 509 i~Gy~~PgrPiAn~~FK~yGyism~Qa 535 (761)
T KOG2262|consen 509 IIGYIYPGRPIANLCFKTYGYISMTQA 535 (761)
T ss_pred HHHhhcCCchHHHHHHHHhchhhHHHH
Confidence 444444444456788899999877654
No 87
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.47 E-value=1e+02 Score=27.08 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023742 76 PVNVAMTFLIGGILGWIVVKLL 97 (278)
Q Consensus 76 ~v~~~l~~lig~~lg~lv~ri~ 97 (278)
.+.+++++++|+++||++.+..
T Consensus 3 ii~~i~~~~vG~~~G~~~~~~~ 24 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLVRKKI 24 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888898887654
No 88
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]
Probab=21.47 E-value=5.3e+02 Score=26.03 Aligned_cols=90 Identities=18% Similarity=0.300 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHhhh----hhccCCcchhHHHHHHhhhhcCCCCCCCcchhhhhhHHHHH
Q 023742 75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIA----TCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYAS 150 (278)
Q Consensus 75 ~~v~~~l~~lig~~lg~lv~ri~r~p~~~~~~~i~----~~~fgN~gnLpl~ii~alc~~~~~pFG~~~~c~~~Gl~Y~s 150 (278)
|.....++.+.+..++++..| .+..+++++. -=+.+=.|++|+.++--+..-+| |.| -+|. .-+..
T Consensus 18 m~~ai~iSi~~~~~lAy~A~K----sk~~E~i~ip~ldVlqSVPVlgFfpi~l~~Fv~lfpG-~lG--vElA---a~Flv 87 (523)
T COG4986 18 MLLAILISILTGWFLAYAAIK----SKRFENIYIPVLDVLQSVPVLGFFPIVLIFFVYLFPG-PLG--VELA---ADFLV 87 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhHhhhhhHHHHHhcCchheehhhhhhhhhhhcCc-chh--HHHH---HHHHH
Confidence 555556666666666666665 4444444443 23567789999999888766555 555 2343 34445
Q ss_pred HHHHHhhHHHHhhhhhhhhcchhhHH
Q 023742 151 FSMALGGFFIWSYSYQLIKQSSVRYK 176 (278)
Q Consensus 151 ~~~~v~~il~wT~g~~ll~~~~~~~~ 176 (278)
|-..++|+.+ --|+-.+.-+.++.
T Consensus 88 FTs~aWNi~f--s~YQsFkTvP~dl~ 111 (523)
T COG4986 88 FTSVAWNIWF--SEYQSFKTVPSDLL 111 (523)
T ss_pred HHHHHHHHHH--HHHHHHccCCHHHH
Confidence 5555555432 22444444333333
No 89
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=21.22 E-value=2e+02 Score=20.95 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023742 65 TLEEIISWWFMPVNVAMTFLIGGILGWIVVKLL 97 (278)
Q Consensus 65 t~~~l~~~w~~~v~~~l~~lig~~lg~lv~ri~ 97 (278)
+++|+.+ .++++.++.+.+||++.+.+
T Consensus 2 ~i~DiiQ------ii~l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 2 NISDIIQ------IIILCALIFFPLGYLARRWL 28 (62)
T ss_pred CHHHHHH------HHHHHHHHHHhHHHHHHHHh
Confidence 3456665 22445566667888888765
No 90
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=20.77 E-value=9.1e+02 Score=24.69 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=52.1
Q ss_pred CChhhHHHHHHHHHHHHhHHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCchhHhhhhhc
Q 023742 35 LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEII-SWWFMPVNVAMTFLIGGILGWIVV-KLLRPKPHLEGLVIATCA 112 (278)
Q Consensus 35 L~~~~~k~Lsklvf~VflP~LIFs~la~~vt~~~l~-~~w~~~v~~~l~~lig~~lg~lv~-ri~r~p~~~~~~~i~~~~ 112 (278)
+++.+...+.++=+.+|+=|.=.++= ..+ .+.+. ..|.+.+..++.+++..++++++. +++|.+.. ...-..+.+
T Consensus 441 ~p~~a~~~l~~~GL~lFla~vG~~aG-~~f-~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~aG~ 517 (562)
T TIGR03802 441 IPSSASWLLKDLGLALFIAVVGLSAG-PQA-VTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPA-LLLGALAGA 517 (562)
T ss_pred cCHHHHHHHHHHhHHHHHHHHHHhhh-HHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHhhcc
Confidence 78888888999999888877644332 221 12233 345555566677777777888888 57887754 223333445
Q ss_pred cCCcchhHHH
Q 023742 113 SGNLGNLLLI 122 (278)
Q Consensus 113 fgN~gnLpl~ 122 (278)
..|+--|+..
T Consensus 518 ~t~t~~l~~a 527 (562)
T TIGR03802 518 RTATPALGAV 527 (562)
T ss_pred CCCcHHHHHH
Confidence 5555555444
No 91
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=20.67 E-value=7.5e+02 Score=23.66 Aligned_cols=65 Identities=22% Similarity=0.454 Sum_probs=46.5
Q ss_pred HHhHHHHHHHhcccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-hHhhhhhccC
Q 023742 50 VFTPSLMFASLAKTVTLEEII----SWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLE-GLVIATCASG 114 (278)
Q Consensus 50 VflP~LIFs~la~~vt~~~l~----~~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~~~-~~~i~~~~fg 114 (278)
....+++|-.++-+.+.+++. +|....+..+.++++.=++||.+.++++.|++.. |++..+|.=|
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pg 110 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPG 110 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCC
Confidence 445567777777777888765 5556666677889999999999999998888754 4444444333
No 92
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.52 E-value=1e+02 Score=22.58 Aligned_cols=18 Identities=11% Similarity=0.770 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023742 79 VAMTFLIGGILGWIVVKL 96 (278)
Q Consensus 79 ~~l~~lig~~lg~lv~ri 96 (278)
++++.++|.++||+++|.
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677888888888874
No 93
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.38 E-value=1.3e+02 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023742 71 SWWFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (278)
Q Consensus 71 ~~w~~~v~~~l~~lig~~lg~lv~ri~r~p~~ 102 (278)
+.|...+..++.+++..++-+++.++++.|..
T Consensus 15 sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~ 46 (108)
T PF07219_consen 15 SLWVALILLLLLFVVLYLLLRLLRRLLSLPSR 46 (108)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 34445555566666666777777777777764
No 94
>TIGR01996 PTS-II-BC-sucr PTS system, sucrose-specific IIBC component. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).
Probab=20.14 E-value=6.4e+02 Score=25.05 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=13.8
Q ss_pred HHHHHhHHHHHHHhcccC
Q 023742 47 VFTVFTPSLMFASLAKTV 64 (278)
Q Consensus 47 vf~VflP~LIFs~la~~v 64 (278)
+| -|+|.++-.+.++..
T Consensus 163 ~f-~fLPil~a~s~AKk~ 179 (461)
T TIGR01996 163 AF-AFLPILIGFSAAKRF 179 (461)
T ss_pred HH-HHHHHHHHHHHHHHh
Confidence 55 599999999988864
Done!