Query 023742
Match_columns 278
No_of_seqs 236 out of 1057
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 12:01:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023742.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023742hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54g_ f.23.2.1 (G:) Mitochon 11.4 69 0.005 21.8 2.5 18 41-58 14-31 (84)
2 d1okkd1 a.24.13.1 (D:21-78) Si 9.1 63 0.0046 20.3 1.5 23 242-264 36-58 (58)
3 d1mh1a_ c.37.1.8 (A:) Rac {Hum 8.7 66 0.0048 23.4 1.7 18 248-265 165-182 (183)
4 d2iuba2 f.17.3.1 (A:286-349) M 7.4 1.1E+02 0.0082 18.9 2.2 23 39-62 5-27 (64)
5 d3d31c1 f.58.1.1 (C:13-260) Su 7.4 4.2E+02 0.031 19.5 6.9 46 71-116 48-94 (248)
6 d2r6gf2 f.58.1.1 (F:261-504) M 6.7 3.5E+02 0.025 20.3 5.6 39 72-110 21-60 (244)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 6.4 5.3E+02 0.039 19.8 13.5 19 98-116 371-390 (447)
8 d1q90l_ f.23.24.1 (L:) PetL su 5.8 97 0.007 16.8 0.9 12 266-277 3-14 (32)
9 d1oedc_ f.36.1.1 (C:) Acetylch 4.7 1.7E+02 0.013 22.3 2.4 16 46-61 4-19 (260)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 4.2 5E+02 0.037 16.9 5.5 23 76-98 34-56 (100)
No 1
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.40 E-value=69 Score=21.80 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 023742 41 RSLNKMVFTVFTPSLMFA 58 (278)
Q Consensus 41 k~Lsklvf~VflP~LIFs 58 (278)
+.--++.|++.+||++..
T Consensus 14 ~lWkkis~~va~P~i~l~ 31 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALC 31 (84)
T ss_dssp HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455566666665543
No 2
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}
Probab=9.11 E-value=63 Score=20.33 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=16.8
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCh
Q 023742 242 RKESFWKRSLEFLHQLLEELLAP 264 (278)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~P 264 (278)
.+.++++.++...++-+.++++|
T Consensus 36 Lr~~~~~~l~~~Lke~l~~~L~P 58 (58)
T d1okkd1 36 VRASGRKDLKEAVKEKLVGMLEP 58 (58)
T ss_dssp HHTTCCSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc
Confidence 33455667888888888888887
No 3
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.70 E-value=66 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHhcChh
Q 023742 248 KRSLEFLHQLLEELLAPP 265 (278)
Q Consensus 248 ~~~~~~~~~~~~~~~~P~ 265 (278)
+.+.++.+.+++++++||
T Consensus 165 ~~V~e~F~~l~~~il~pp 182 (183)
T d1mh1a_ 165 RGLKTVFDEAIRAVLCPP 182 (183)
T ss_dssp TTHHHHHHHHHHHHSCCC
T ss_pred cCHHHHHHHHHHHHcCCC
Confidence 467788888899999998
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.38 E-value=1.1e+02 Score=18.87 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHHhcc
Q 023742 39 ARRSLNKMVFTVFTPSLMFASLAK 62 (278)
Q Consensus 39 ~~k~Lsklvf~VflP~LIFs~la~ 62 (278)
..|.|+-+.. +|+|.-..+++..
T Consensus 5 ~mk~lT~it~-iflP~t~i~gifG 27 (64)
T d2iuba2 5 VMKVLTIIAT-IFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHHHHHH-HHHHHHHHTTSCC
T ss_pred HHHHHHHHHH-HHHHHHHHHhhhc
Confidence 4555555544 8899888888866
No 5
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=7.38 E-value=4.2e+02 Score=19.54 Aligned_cols=46 Identities=17% Similarity=0.010 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchhHhhhhhccCCc
Q 023742 71 SWWFMPVNVAMTFLIGGILGWIVVKLL-RPKPHLEGLVIATCASGNL 116 (278)
Q Consensus 71 ~~w~~~v~~~l~~lig~~lg~lv~ri~-r~p~~~~~~~i~~~~fgN~ 116 (278)
..|.-...++++.+++.++|..++... |.+.+.|+.....+..+..
T Consensus 48 ~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~~l~~~p~~ 94 (248)
T d3d31c1 48 SIFLSLYAGFLATLLALLLGAPTGYILARFDFPGKRLVESIIDVPVV 94 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 344455555666666666666666554 3445556655554444443
No 6
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.67 E-value=3.5e+02 Score=20.32 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCchhHhhhh
Q 023742 72 WWFMPVNVAMTFLIGGILGWIVVKLL-RPKPHLEGLVIAT 110 (278)
Q Consensus 72 ~w~~~v~~~l~~lig~~lg~lv~ri~-r~p~~~~~~~i~~ 110 (278)
.+.-.+.++++.+++..+|+.++..+ |.+.+.|+++...
T Consensus 21 l~~t~~~~~~~~~~~~~~~~~lA~~l~~~~~~~~~~~~~~ 60 (244)
T d2r6gf2 21 FVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVL 60 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 33344555666777777777777665 3444555544443
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.41 E-value=5.3e+02 Score=19.78 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=10.0
Q ss_pred cCCCCchhHhhhh-hccCCc
Q 023742 98 RPKPHLEGLVIAT-CASGNL 116 (278)
Q Consensus 98 r~p~~~~~~~i~~-~~fgN~ 116 (278)
..|++.++..... ..++|.
T Consensus 371 ~~p~~~~g~~~g~~~~~~~~ 390 (447)
T d1pw4a_ 371 LAPKKAAGTAAGFTGLFGYL 390 (447)
T ss_dssp TSCTTHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHH
Confidence 3466666655443 244555
No 8
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.76 E-value=97 Score=16.78 Aligned_cols=12 Identities=8% Similarity=0.019 Sum_probs=7.7
Q ss_pred HHHHHHHHhhcC
Q 023742 266 TLAAVSFFSLTM 277 (278)
Q Consensus 266 ti~~i~g~~iG~ 277 (278)
||-+-+|+.||+
T Consensus 3 ti~syvglliga 14 (32)
T d1q90l_ 3 TITSYVGLLIGA 14 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehHHHHHHHHHH
Confidence 556666777664
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.73 E-value=1.7e+02 Score=22.27 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHhc
Q 023742 46 MVFTVFTPSLMFASLA 61 (278)
Q Consensus 46 lvf~VflP~LIFs~la 61 (278)
+++++.+||.+++.++
T Consensus 4 y~~n~~~P~~~~~~l~ 19 (260)
T d1oedc_ 4 YVINFITPCVLISFLA 19 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHH
Confidence 5788999999988775
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.24 E-value=5e+02 Score=16.89 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 023742 76 PVNVAMTFLIGGILGWIVVKLLR 98 (278)
Q Consensus 76 ~v~~~l~~lig~~lg~lv~ri~r 98 (278)
.+..++..++.+++.|.+.|..+
T Consensus 34 ~i~~~I~~~V~~~l~~~~~~~r~ 56 (100)
T d3dtub2 34 VIIAAITIFVTLLILYAVWRFHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 34445556666667777777553
Done!