Query 023743
Match_columns 278
No_of_seqs 207 out of 1193
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 4.7E-71 1E-75 509.7 24.4 265 7-278 36-301 (301)
2 PLN02154 carbonic anhydrase 100.0 2.9E-60 6.4E-65 435.7 25.2 236 33-278 55-290 (290)
3 PLN03014 carbonic anhydrase 100.0 4.5E-60 9.7E-65 442.2 22.0 258 5-275 82-340 (347)
4 PLN03019 carbonic anhydrase 100.0 1.4E-59 3E-64 436.9 22.0 249 5-260 77-326 (330)
5 PLN00416 carbonate dehydratase 100.0 1.5E-57 3.2E-62 414.9 22.8 251 1-260 1-253 (258)
6 cd00884 beta_CA_cladeB Carboni 100.0 1.2E-52 2.7E-57 367.9 20.1 186 62-251 2-189 (190)
7 PRK10437 carbonic anhydrase; P 100.0 7.8E-52 1.7E-56 369.5 22.7 193 58-258 4-197 (220)
8 cd00883 beta_CA_cladeA Carboni 100.0 4.4E-52 9.5E-57 362.1 20.3 176 68-251 4-181 (182)
9 PRK15219 carbonic anhydrase; P 100.0 5E-51 1.1E-55 369.7 21.9 191 50-252 52-244 (245)
10 COG0288 CynT Carbonic anhydras 100.0 9.6E-50 2.1E-54 353.6 19.3 195 58-258 4-201 (207)
11 cd03378 beta_CA_cladeC Carboni 100.0 2.4E-46 5.2E-51 317.9 17.8 152 51-251 1-153 (154)
12 KOG1578 Predicted carbonic anh 100.0 1.8E-45 3.9E-50 332.1 13.2 216 55-278 60-276 (276)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.8E-43 4E-48 298.1 18.6 151 91-249 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 5.9E-42 1.3E-46 279.6 15.6 119 87-252 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 3.5E-39 7.7E-44 270.6 12.0 142 87-252 1-142 (142)
16 KOG1578 Predicted carbonic anh 97.9 5.1E-07 1.1E-11 82.8 -4.4 104 81-184 20-150 (276)
17 COG1254 AcyP Acylphosphatases 58.2 8.3 0.00018 30.2 2.3 21 235-255 30-50 (92)
18 PF10070 DUF2309: Uncharacteri 57.9 19 0.00042 38.5 5.6 39 218-256 539-583 (788)
19 PF04019 DUF359: Protein of un 47.9 1.1E+02 0.0023 25.1 7.4 79 83-168 6-84 (121)
20 PF07859 Abhydrolase_3: alpha/ 44.4 19 0.00042 30.5 2.6 34 133-166 51-89 (211)
21 PF05952 ComX: Bacillus compet 41.0 32 0.0007 24.7 2.8 24 217-240 6-29 (57)
22 PLN02621 nicotinamidase 39.1 1.6E+02 0.0035 25.4 7.6 38 110-156 99-136 (197)
23 PRK14432 acylphosphatase; Prov 37.3 39 0.00085 26.2 3.1 20 235-254 28-47 (93)
24 PF00009 GTP_EFTU: Elongation 36.7 20 0.00044 30.4 1.5 15 147-161 3-17 (188)
25 PRK11440 putative hydrolase; P 34.6 82 0.0018 26.9 5.0 48 107-163 90-137 (188)
26 PRK14445 acylphosphatase; Prov 34.0 60 0.0013 24.9 3.6 19 235-253 30-48 (91)
27 PRK14423 acylphosphatase; Prov 33.7 59 0.0013 25.1 3.6 19 235-253 31-49 (92)
28 PRK14440 acylphosphatase; Prov 33.4 52 0.0011 25.4 3.2 20 235-254 29-48 (90)
29 cd01891 TypA_BipA TypA (tyrosi 33.0 27 0.00059 29.7 1.7 13 147-159 2-14 (194)
30 COG0279 GmhA Phosphoheptose is 32.7 90 0.002 27.4 4.8 96 49-164 51-153 (176)
31 PF00857 Isochorismatase: Isoc 31.7 1.5E+02 0.0033 24.4 6.1 46 111-165 85-130 (174)
32 PF01973 MAF_flag10: Protein o 31.7 1.6E+02 0.0034 24.7 6.2 23 131-154 140-162 (170)
33 PF00355 Rieske: Rieske [2Fe-2 31.1 21 0.00046 26.9 0.7 16 235-250 64-79 (97)
34 PRK14429 acylphosphatase; Prov 30.9 65 0.0014 24.7 3.4 20 235-254 28-47 (90)
35 PRK14430 acylphosphatase; Prov 30.4 60 0.0013 25.1 3.1 19 235-253 30-48 (92)
36 PRK14441 acylphosphatase; Prov 29.7 82 0.0018 24.3 3.8 21 234-254 30-50 (93)
37 PRK14448 acylphosphatase; Prov 29.2 64 0.0014 24.8 3.1 20 235-254 28-47 (90)
38 TIGR01250 pro_imino_pep_2 prol 28.4 69 0.0015 27.4 3.5 33 134-166 82-114 (288)
39 PF12697 Abhydrolase_6: Alpha/ 27.9 68 0.0015 26.0 3.3 33 133-165 51-83 (228)
40 PF00708 Acylphosphatase: Acyl 27.8 72 0.0016 24.2 3.1 19 235-253 30-48 (91)
41 cd01890 LepA LepA subfamily. 27.6 33 0.00072 28.1 1.3 12 148-159 1-12 (179)
42 PRK14434 acylphosphatase; Prov 27.6 86 0.0019 24.2 3.6 20 235-254 28-48 (92)
43 PRK14436 acylphosphatase; Prov 27.5 82 0.0018 24.3 3.4 20 235-254 30-49 (91)
44 TIGR03100 hydr1_PEP hydrolase, 27.4 71 0.0015 28.8 3.6 31 133-164 84-115 (274)
45 PRK14449 acylphosphatase; Prov 26.6 87 0.0019 24.0 3.4 20 235-254 29-48 (90)
46 PRK03592 haloalkane dehalogena 26.6 70 0.0015 28.7 3.4 33 134-166 79-111 (295)
47 PRK14425 acylphosphatase; Prov 26.1 87 0.0019 24.3 3.3 20 235-254 32-51 (94)
48 PRK14451 acylphosphatase; Prov 25.9 81 0.0018 24.2 3.1 20 235-254 29-48 (89)
49 PRK14444 acylphosphatase; Prov 25.7 85 0.0018 24.2 3.2 19 235-253 30-48 (92)
50 cd03528 Rieske_RO_ferredoxin R 25.7 27 0.00059 26.4 0.4 16 235-250 60-75 (98)
51 PRK14422 acylphosphatase; Prov 25.5 85 0.0018 24.3 3.2 19 235-253 32-50 (93)
52 PRK14433 acylphosphatase; Prov 25.4 86 0.0019 23.9 3.2 20 235-254 27-46 (87)
53 cd03548 Rieske_RO_Alpha_OMO_CA 25.1 40 0.00086 27.7 1.3 18 235-252 76-93 (136)
54 PRK14426 acylphosphatase; Prov 25.0 91 0.002 24.0 3.3 19 235-253 30-48 (92)
55 COG4027 Uncharacterized protei 24.8 53 0.0012 28.7 2.0 91 32-123 76-171 (194)
56 PRK14420 acylphosphatase; Prov 24.6 97 0.0021 23.7 3.3 19 235-253 28-46 (91)
57 PF00561 Abhydrolase_1: alpha/ 24.5 74 0.0016 26.4 2.9 33 132-164 28-60 (230)
58 COG1116 TauB ABC-type nitrate/ 24.5 43 0.00093 30.9 1.5 16 147-162 29-44 (248)
59 PLN02824 hydrolase, alpha/beta 24.5 80 0.0017 28.2 3.3 32 135-166 89-120 (294)
60 PF08184 Cuticle_2: Cuticle pr 24.0 39 0.00084 23.5 0.9 13 238-250 7-19 (59)
61 cd03478 Rieske_AIFL_N AIFL (ap 23.7 27 0.00058 26.4 0.0 16 235-250 59-74 (95)
62 cd01887 IF2_eIF5B IF2/eIF5B (i 23.6 48 0.001 26.6 1.6 14 148-161 1-14 (168)
63 cd01878 HflX HflX subfamily. 23.5 50 0.0011 28.1 1.7 16 146-161 40-55 (204)
64 cd04160 Arfrp1 Arfrp1 subfamil 23.4 42 0.00091 27.1 1.2 14 149-162 1-14 (167)
65 PF09905 DUF2132: Uncharacteri 23.4 75 0.0016 23.3 2.3 22 211-232 40-61 (64)
66 cd04169 RF3 RF3 subfamily. Pe 23.1 50 0.0011 30.3 1.7 16 147-162 2-17 (267)
67 PRK14446 acylphosphatase; Prov 22.8 1.2E+02 0.0026 23.3 3.5 21 234-254 27-47 (88)
68 PRK14438 acylphosphatase; Prov 22.8 1.1E+02 0.0025 23.4 3.4 20 235-254 29-48 (91)
69 cd04167 Snu114p Snu114p subfam 22.3 46 0.001 28.9 1.3 14 148-161 1-14 (213)
70 PRK14437 acylphosphatase; Prov 22.0 1E+02 0.0022 24.8 3.1 20 235-254 49-68 (109)
71 PF13580 SIS_2: SIS domain; PD 21.9 1.5E+02 0.0033 24.0 4.2 39 107-154 99-138 (138)
72 PRK14427 acylphosphatase; Prov 21.5 1.3E+02 0.0028 23.3 3.5 20 235-254 32-51 (94)
73 PF01764 Lipase_3: Lipase (cla 21.0 1.4E+02 0.0031 23.4 3.9 33 134-166 50-82 (140)
74 TIGR02377 MocE_fam_FeS Rieske 21.0 40 0.00087 26.0 0.6 16 235-250 62-77 (101)
75 PRK14421 acylphosphatase; Prov 21.0 1.2E+02 0.0026 23.9 3.3 19 235-253 30-48 (99)
76 cd01015 CSHase N-carbamoylsarc 20.9 2.1E+02 0.0045 24.2 5.0 46 107-161 83-128 (179)
77 PRK10566 esterase; Provisional 20.9 1.2E+02 0.0025 26.3 3.5 27 136-162 93-121 (249)
78 PRK14428 acylphosphatase; Prov 20.8 1.3E+02 0.0028 23.6 3.4 20 235-254 34-53 (97)
79 PRK14452 acylphosphatase; Prov 20.3 1.2E+02 0.0025 24.3 3.1 19 235-253 46-64 (107)
80 PRK14443 acylphosphatase; Prov 20.2 1.4E+02 0.0031 23.2 3.5 20 235-254 30-49 (93)
81 PRK14424 acylphosphatase; Prov 20.0 1.3E+02 0.0027 23.5 3.2 20 235-254 33-52 (94)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=4.7e-71 Score=509.73 Aligned_cols=265 Identities=54% Similarity=0.960 Sum_probs=236.9
Q ss_pred hhhhcccchhhhccc-cceeeecccCCcccchhhhhcccccccCCccchHHHHHHHHHHHHccccccchhchHHHHhhhc
Q 023743 7 RDAQQGFTPVLKRRS-FSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAK 85 (278)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la~ 85 (278)
..|++||..++||+. ++..+| +.+++++|++|+.... ++....+++++|++||+.|+..++.+++++|++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~ 109 (301)
T PLN03006 36 KTTQLRIPASFRRKATNLQVMA--SGKTPGLTQEANGVAI----DRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLAD 109 (301)
T ss_pred ceeEecccccccccccchhhhh--hhchHHHHHHHhhccC----CCCCcccHHHHHHHHHHhchhhccccCHHHHHHhcc
Confidence 448899999888775 788999 9999999999975432 223468999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHh
Q 023743 86 AQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALM 165 (278)
Q Consensus 86 gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~ 165 (278)
||+|+++||+||||||||+.|||++|||+||||||||+|+|++.+..++.+||||||.+|+|++|||||||+||||+|++
T Consensus 110 GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 110 AQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALM 189 (301)
T ss_pred CCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHHh
Confidence 99999999999999999999999999999999999999999876556799999999999999999999999999999999
Q ss_pred hhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEEcC
Q 023743 166 RMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLL 245 (278)
Q Consensus 166 ~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YDl~ 245 (278)
+..+.+.. .++|+.|+..+++++...........+++++..++++||+.|+++|++||+|++++++|+|+|||||||+.
T Consensus 190 ~~~~~g~~-~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~ 268 (301)
T PLN03006 190 KMEDEGDS-RSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFV 268 (301)
T ss_pred hccccCCc-hhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECC
Confidence 86554432 47999999988887765543223345777888899999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCcccccccCcceeccCCCCC
Q 023743 246 NCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 278 (278)
Q Consensus 246 tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
||+|+.|..+|+.++++.||||+|++|||+|||
T Consensus 269 tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 269 DCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred CceEEEecccccccccccccCCceeeecccccC
Confidence 999999999999999988899999999999998
No 2
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=2.9e-60 Score=435.68 Aligned_cols=236 Identities=54% Similarity=0.970 Sum_probs=204.6
Q ss_pred cccchhhhhcccccccCCccchHHHHHHHHHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCC
Q 023743 33 AAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPG 112 (278)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pG 112 (278)
.++.+++|.... .+++.+++.|++|++||++|+..++.++++.|+.++.||+|+++||+||||||||+.|||++||
T Consensus 55 ~~~~~~~~~~~~----~~~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pG 130 (290)
T PLN02154 55 ELGIREEFMDLN----RETETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPG 130 (290)
T ss_pred cchhhHHHHhcc----cCcchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCC
Confidence 345667776554 2678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHH
Q 023743 113 ETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRT 192 (278)
Q Consensus 113 dlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~ 192 (278)
|+||+||+||+|++++.++.++.+||||||.+|+|++|||||||+||||+|+++.........+++++|+..+++++.+.
T Consensus 131 dlFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~ 210 (290)
T PLN02154 131 EAFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRT 210 (290)
T ss_pred CEEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999877666899999999999999999999999999999998753221112368999998877765543
Q ss_pred hhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEEcCCCeEEEEeecCCCCcccccccCcceec
Q 023743 193 KAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIK 272 (278)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YDl~tG~ve~~~~~~~~~~~~~~~~~~~~~~ 272 (278)
.......++++.+..++++||+.|+++|++||+|++++++|+|+||||+||++||.|+.|..+.+ +.|+.|++|
T Consensus 211 ~~~~~~~~~~~~~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~------~f~~~~~~~ 284 (290)
T PLN02154 211 QLASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD------KTNYGFYIS 284 (290)
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC------cccCceeec
Confidence 32222345566677788899999999999999999999999999999999999999999988775 478889999
Q ss_pred cCCCCC
Q 023743 273 DHSFWS 278 (278)
Q Consensus 273 ~~~~~~ 278 (278)
||++||
T Consensus 285 ~~~~~~ 290 (290)
T PLN02154 285 DREIWS 290 (290)
T ss_pred cccccC
Confidence 999998
No 3
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=4.5e-60 Score=442.17 Aligned_cols=258 Identities=38% Similarity=0.667 Sum_probs=222.5
Q ss_pred hhhhhhcccchhhhccccceeeecccCCcccchhhhhcccccccCCccchHHHHHHHHHHHHccccccchhchHHHHhhh
Q 023743 5 KIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA 84 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la 84 (278)
-.++++.+|.++|+++..|..+| +.+...+|.+|+..... .....+++++|.+||.+|+...+.+++++|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La 155 (347)
T PLN03014 82 AYDEAIEALKKLLIEKEELKTVA--AAKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKEKYETNPALYGELA 155 (347)
T ss_pred hHHHHHHHHHhhcccccccchHH--HHhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhc
Confidence 46889999999999999999999 99999999999863221 1235778888888888898888888999999999
Q ss_pred ccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCC-CchhhhHHHHHHHhcCccEEEEEecCcchhHHH
Q 023743 85 KAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG-PSETNAALEFAVNTLEVQNILVIGHSDCGGIQA 163 (278)
Q Consensus 85 ~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~-~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~A 163 (278)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|++++.. ..++.++|||||.+|+|++|||||||+||||+|
T Consensus 156 ~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~A 235 (347)
T PLN03014 156 KGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 235 (347)
T ss_pred cCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHH
Confidence 9999999999999999999999999999999999999999997632 235889999999999999999999999999999
Q ss_pred HhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEE
Q 023743 164 LMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYD 243 (278)
Q Consensus 164 a~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YD 243 (278)
++....++....++|+.|+..+++++.+........++.+++..++++||+.||++|++||+|++++++|+|+||||+||
T Consensus 236 a~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YD 315 (347)
T PLN03014 236 LMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYD 315 (347)
T ss_pred HHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98754332222379999999999988765543344466777777889999999999999999999999999999999999
Q ss_pred cCCCeEEEEeecCCCCcccccccCcceeccCC
Q 023743 244 LLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHS 275 (278)
Q Consensus 244 l~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (278)
++||+|+.|..+++.+.. +++|+-+
T Consensus 316 i~TG~V~~l~~~~~~~~~-------~~~~~~~ 340 (347)
T PLN03014 316 FVKGAFELWGLEFGLSET-------SSVKDVA 340 (347)
T ss_pred CCCceEEEeccccccCCc-------cccchhH
Confidence 999999999999887654 5666644
No 4
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.4e-59 Score=436.85 Aligned_cols=249 Identities=39% Similarity=0.685 Sum_probs=215.0
Q ss_pred hhhhhhcccchhhhccccceeeecccCCcccchhhhhcccccccCCccchHHHHHHHHHHHHccccccchhchHHHHhhh
Q 023743 5 KIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA 84 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la 84 (278)
-.++++.+|.++|+++..|..+| +.+...+|.+|+..... ...+.+++++|.+||.+|+...+.+++++|+.++
T Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 77 SYEDAIEALKKLLIEKDDLKDVA--AAKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred hHHHHHHHHHhhcccccccchHH--HHHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 36889999999999999999999 99999999999864322 1235788899999999999888888999999999
Q ss_pred ccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCC-CchhhhHHHHHHHhcCccEEEEEecCcchhHHH
Q 023743 85 KAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG-PSETNAALEFAVNTLEVQNILVIGHSDCGGIQA 163 (278)
Q Consensus 85 ~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~-~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~A 163 (278)
.||+|+++||+||||||+|+.|||++|||+||+|||||+|+|++.+ ..++.+||||||.+|+|++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 9999999999999999999999999999999999999999987642 246889999999999999999999999999999
Q ss_pred HhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEE
Q 023743 164 LMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYD 243 (278)
Q Consensus 164 a~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YD 243 (278)
+++...++....++|..|+..+.|++..........++.+++..+++ ||+.|+++|+++|+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 98754332222379999999999987654432233355566555655 99999999999999999999999999999999
Q ss_pred cCCCeEEEEeecCCCCc
Q 023743 244 LLNCTFEKWTLDYKGRK 260 (278)
Q Consensus 244 l~tG~ve~~~~~~~~~~ 260 (278)
++||+|+.|..+|+.+.
T Consensus 310 l~TG~V~~~~~~~~~~~ 326 (330)
T PLN03019 310 FVNGSFELWELQFGISP 326 (330)
T ss_pred CCCceEEEEccccCcCC
Confidence 99999999999998765
No 5
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.5e-57 Score=414.91 Aligned_cols=251 Identities=40% Similarity=0.706 Sum_probs=210.3
Q ss_pred CcchhhhhhhcccchhhhccccceeeecccCCcccchhhhhcccccccCCccchHHHHHHHHHHHHccccccchhchHHH
Q 023743 1 MKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHF 80 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~ 80 (278)
|--+..++...+|.++|+.+..++-++ ..+...++..|+.... +|+++++.|.++|+||++.+ +.+++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~al~~Ll~Gn~rF~~~~---~~~~~~~~ 71 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVA--AAKIKALTAELKELDS----SNSDAIERIKTGFTQFKTEK---YLKNSTLF 71 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHH--HHhHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHhcc---cccCHHHH
Confidence 344567899999999999999999999 8888889999988643 56777777777777776655 45678899
Q ss_pred HhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCC-CchhhhHHHHHHHhcCccEEEEEecCcch
Q 023743 81 QNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG-PSETNAALEFAVNTLEVQNILVIGHSDCG 159 (278)
Q Consensus 81 ~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~-~~~~~asLEyAv~~L~vk~IVV~GHt~CG 159 (278)
+.++.+|+|+++|||||||||||+.|||++|||+||+||+||+|+|++.. .+++.+||||||.+|+|++|||||||+||
T Consensus 72 ~~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CG 151 (258)
T PLN00416 72 NHLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCG 151 (258)
T ss_pred HhhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCch
Confidence 99999999999999999999999999999999999999999999997642 24688999999999999999999999999
Q ss_pred hHHHHhhhccCc-chhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEE
Q 023743 160 GIQALMRMQDDV-DSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIH 238 (278)
Q Consensus 160 av~Aa~~~~~~~-~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~ 238 (278)
||+|+++..+.. ....+++..|+..++|+..+........++.+.+..++++||++|+++|++||+|++++++|+|+||
T Consensus 152 aV~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~ 231 (258)
T PLN00416 152 GIKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIR 231 (258)
T ss_pred HHHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEE
Confidence 999998743221 1112589999999999876544333334555666678889999999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEeecCCCCc
Q 023743 239 GGYYDLLNCTFEKWTLDYKGRK 260 (278)
Q Consensus 239 G~~YDl~tG~ve~~~~~~~~~~ 260 (278)
||+||++||+|+.+..+++.+.
T Consensus 232 G~~Ydl~TG~v~~~~~~~~~~p 253 (258)
T PLN00416 232 GGHYNFVKGTFDLWELDFKTTP 253 (258)
T ss_pred EEEEECCCceEEEeccCcCCCC
Confidence 9999999999999998876544
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.2e-52 Score=367.87 Aligned_cols=186 Identities=46% Similarity=0.698 Sum_probs=158.8
Q ss_pred HHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCC--CCchhhhHHH
Q 023743 62 KQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN--GPSETNAALE 139 (278)
Q Consensus 62 ~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~--~~~~~~asLE 139 (278)
++||++ ..+.+++++|++++.||+|+++|||||||||+|+.+|+.+|||+||+||+||+|++++. ++.++.+|||
T Consensus 2 ~~~f~~---~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asle 78 (190)
T cd00884 2 FRRFRK---EYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIE 78 (190)
T ss_pred hHHHHh---hhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHH
Confidence 445544 44567889999999999999999999999999999999999999999999999998754 3457999999
Q ss_pred HHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHH
Q 023743 140 FAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILN 219 (278)
Q Consensus 140 yAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~ 219 (278)
|||.+|+|++|||||||+||||+|+++.... ....+++..|+..+.++...........+..+..+..++.||.+|+++
T Consensus 79 yav~~l~v~~ivV~GH~~Cgav~Aa~~~~~~-~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~ 157 (190)
T cd00884 79 YAVAVLKVEHIVVCGHSDCGGIRALLSPEDL-LDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLEN 157 (190)
T ss_pred HHHHHhCCCEEEEeCCCcchHHHHHhccccc-cCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875331 112368999999999987665433223344555677889999999999
Q ss_pred HhcCHhHHHHHhCCceEEEEEEEEcCCCeEEE
Q 023743 220 LLTYPWIEERVRKELLFIHGGYYDLLNCTFEK 251 (278)
Q Consensus 220 L~~~p~I~~~v~~g~L~I~G~~YDl~tG~ve~ 251 (278)
|+++|+|++++++|+|+||||+||+.||+|+.
T Consensus 158 L~~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~ 189 (190)
T cd00884 158 LLTYPFVRERLEAGTLSLHGWYYDIETGELYA 189 (190)
T ss_pred HHhCHHHHHHHHCCCcEEEEEEEECCceEEEe
Confidence 99999999999999999999999999999985
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=7.8e-52 Score=369.51 Aligned_cols=193 Identities=26% Similarity=0.459 Sum_probs=166.6
Q ss_pred HHHHHHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhH
Q 023743 58 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAA 137 (278)
Q Consensus 58 l~~l~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~as 137 (278)
+++|++|+.+|....+..++++|+.++.+|+|+++|||||||||||+.+||++|||+||+||+||+|++.+. +++++
T Consensus 4 ~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~---~~~~~ 80 (220)
T PRK10437 4 IDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL---NCLSV 80 (220)
T ss_pred HHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc---chHHH
Confidence 556666666666655667889999999999999999999999999999999999999999999999997653 68999
Q ss_pred HHHHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHH
Q 023743 138 LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSI 217 (278)
Q Consensus 138 LEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv 217 (278)
|||||.+|+|++|||||||+||||+|+++... .+++..|+.++.++...........+..+..+..+++||..|+
T Consensus 81 leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv 155 (220)
T PRK10437 81 VQYAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQV 155 (220)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986421 2689999999998876543323334445566778899999999
Q ss_pred HHHhcCHhHHHHHhCC-ceEEEEEEEEcCCCeEEEEeecCCC
Q 023743 218 LNLLTYPWIEERVRKE-LLFIHGGYYDLLNCTFEKWTLDYKG 258 (278)
Q Consensus 218 ~~L~~~p~I~~~v~~g-~L~I~G~~YDl~tG~ve~~~~~~~~ 258 (278)
++|+++|+|++++++| +|+||||+||++||+|+.+..+.+.
T Consensus 156 ~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~ 197 (220)
T PRK10437 156 YNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATN 197 (220)
T ss_pred HHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCc
Confidence 9999999999999999 6999999999999999998877655
No 8
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.4e-52 Score=362.15 Aligned_cols=176 Identities=31% Similarity=0.536 Sum_probs=151.1
Q ss_pred cccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCc
Q 023743 68 FKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEV 147 (278)
Q Consensus 68 ~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~v 147 (278)
|....+.+.+++|+.++.+|+|+++|||||||||+|+.|||++|||+||+||+||+|++.+. ++.+||||||.+|||
T Consensus 4 f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~---~~~asleyAv~~L~v 80 (182)
T cd00883 4 WAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL---NCLSVLQYAVDVLKV 80 (182)
T ss_pred hhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc---chhhhHHHHHHhcCC
Confidence 33344667889999999999999999999999999999999999999999999999998653 689999999999999
Q ss_pred cEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCC-CHHHHhHHHHHHHHHHHHHHHhcCHhH
Q 023743 148 QNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHL-SFDQQCRHCEKESISRSILNLLTYPWI 226 (278)
Q Consensus 148 k~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~~p~I 226 (278)
++|||||||+||||+|+++... .+++.+|+..+.++........... +.++....++++||++|+++|+++|+|
T Consensus 81 ~~IvV~GHs~CGav~a~~~~~~-----~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i 155 (182)
T cd00883 81 KHIIVCGHYGCGGVKAALTGKR-----LGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPIV 155 (182)
T ss_pred CEEEEecCCCchHHHHHHcCCC-----CccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 9999999999999999986431 2689999998888654432212222 344456678899999999999999999
Q ss_pred HHHHhC-CceEEEEEEEEcCCCeEEE
Q 023743 227 EERVRK-ELLFIHGGYYDLLNCTFEK 251 (278)
Q Consensus 227 ~~~v~~-g~L~I~G~~YDl~tG~ve~ 251 (278)
++++++ |+|.||||+||++||+|+.
T Consensus 156 ~~~~~~~~~l~I~G~~ydi~tG~v~~ 181 (182)
T cd00883 156 QDAWKRGQELEVHGWVYDLGDGLLRD 181 (182)
T ss_pred HHHHHcCCCeEEEEEEEEcCccEEEe
Confidence 999999 8999999999999999985
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=5e-51 Score=369.69 Aligned_cols=191 Identities=21% Similarity=0.259 Sum_probs=158.6
Q ss_pred CccchHHHHHHHHHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCC
Q 023743 50 KSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN 129 (278)
Q Consensus 50 ~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~ 129 (278)
+|+++++.|.++|+||++....+. +....+..+++||+|+++||||||||||||.|||++|||+||+||+||+|++
T Consensus 52 ~p~~al~~L~~GN~rF~~~~~~~~-~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~--- 127 (245)
T PRK15219 52 TPDQIIESLKQGNKRFRSGKPAQH-DYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND--- 127 (245)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCc-hhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc---
Confidence 577788888888888888764322 1222233467999999999999999999999999999999999999999975
Q ss_pred CCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhh-cCCCHHHHhHHH
Q 023743 130 GPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYT-AHLSFDQQCRHC 208 (278)
Q Consensus 130 ~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~-~~~~~~~~~~~~ 208 (278)
++++||||||.+|+|++|||||||+||||+|+++... .+++..|++.++|+....+... ...+.++.+..+
T Consensus 128 ---~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~ 199 (245)
T PRK15219 128 ---DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAV 199 (245)
T ss_pred ---chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHH
Confidence 5789999999999999999999999999999987532 2689999999999876543211 111333455678
Q ss_pred HHHHHHHHHHHHhc-CHhHHHHHhCCceEEEEEEEEcCCCeEEEE
Q 023743 209 EKESISRSILNLLT-YPWIEERVRKELLFIHGGYYDLLNCTFEKW 252 (278)
Q Consensus 209 ~~~nV~~qv~~L~~-~p~I~~~v~~g~L~I~G~~YDl~tG~ve~~ 252 (278)
+++||+.|+++|++ +|++++.+++|+|+||||+||++||+|+.+
T Consensus 200 ~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 200 ARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 89999999999985 899999999999999999999999999865
No 10
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.6e-50 Score=353.62 Aligned_cols=195 Identities=27% Similarity=0.468 Sum_probs=156.7
Q ss_pred HHHHHHHHHccccccchhchHHHHhhhc-cCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhh
Q 023743 58 FEEMKQRFLSFKKNKYFEELEHFQNLAK-AQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNA 136 (278)
Q Consensus 58 l~~l~~rf~~~~~~~~~~~~~~~~~la~-gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~a 136 (278)
++++++++.+|....++..+.+|+.++. +|+|+++||||||||||||.+||++|||+||+|||||+|+|++ .++++
T Consensus 4 ~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~---~~~l~ 80 (207)
T COG0288 4 LKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD---GSVLR 80 (207)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc---cchhH
Confidence 4444444444444446678888888765 5999999999999999999999999999999999999999865 37999
Q ss_pred HHHHHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHH-HHhHHHHHHHHHH
Q 023743 137 ALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFD-QQCRHCEKESISR 215 (278)
Q Consensus 137 sLEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~nV~~ 215 (278)
|||||+.+|||++|||||||+|||++|+++....+. ..+..|+.++.+............... +......+.||+.
T Consensus 81 sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~---~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~~ 157 (207)
T COG0288 81 SLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGL---KPIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVRE 157 (207)
T ss_pred HHHHHHHHcCCCEEEEecCCCcHHHHhccccccccc---cccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHHH
Confidence 999999999999999999999999999987654421 148999988777664433221111211 3445667899999
Q ss_pred HHHHHhcCHhHHHHHhCCc-eEEEEEEEEcCCCeEEEEeecCCC
Q 023743 216 SILNLLTYPWIEERVRKEL-LFIHGGYYDLLNCTFEKWTLDYKG 258 (278)
Q Consensus 216 qv~~L~~~p~I~~~v~~g~-L~I~G~~YDl~tG~ve~~~~~~~~ 258 (278)
|+++|+++|.|+.++..|+ |.||||+||++||++..+..+...
T Consensus 158 qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 158 QVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 9999999999999888776 999999999999999988876554
No 11
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.4e-46 Score=317.90 Aligned_cols=152 Identities=31% Similarity=0.464 Sum_probs=135.8
Q ss_pred ccchHHHHHHHHHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCC
Q 023743 51 SCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG 130 (278)
Q Consensus 51 ~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~ 130 (278)
|+++++.|.++|+||.+.....+..+++.|..++++|+|+++||||||||++|+.+|+.+|||+||+||+||++++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 5677788888888888765433333467788999999999999999999999999999999999999999999986
Q ss_pred CchhhhHHHHHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHH
Q 023743 131 PSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEK 210 (278)
Q Consensus 131 ~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 210 (278)
++++|||||+.+|+|++|||||||+||+++++ +.+
T Consensus 77 --~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~ 111 (154)
T cd03378 77 --DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVR 111 (154)
T ss_pred --hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHH
Confidence 58999999999999999999999999999864 246
Q ss_pred HHHHHHHHHHhcCHhHHH-HHhCCceEEEEEEEEcCCCeEEE
Q 023743 211 ESISRSILNLLTYPWIEE-RVRKELLFIHGGYYDLLNCTFEK 251 (278)
Q Consensus 211 ~nV~~qv~~L~~~p~I~~-~v~~g~L~I~G~~YDl~tG~ve~ 251 (278)
+||+.|+++|+++|+|++ ++++|+|+||||+||++||+++.
T Consensus 112 ~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~ 153 (154)
T cd03378 112 ANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEF 153 (154)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEe
Confidence 899999999999999888 99999999999999999999974
No 12
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-45 Score=332.08 Aligned_cols=216 Identities=43% Similarity=0.731 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCC-CCch
Q 023743 55 LDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSE 133 (278)
Q Consensus 55 ~~~l~~l~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~-~~~~ 133 (278)
.+.++++.++|+.|+...|..+|..|..++++|+|+.+||+|+||||+|+.|++++|||.|++||++|+++|.+. ++..
T Consensus 60 ~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~ 139 (276)
T KOG1578|consen 60 FDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTN 139 (276)
T ss_pred cchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999998764 4567
Q ss_pred hhhHHHHHHHhcCccEEEEEecCcchhHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHH
Q 023743 134 TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESI 213 (278)
Q Consensus 134 ~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV 213 (278)
+.|+|||||.+|+|++|+||||++|||++++|....++. ..+++..|+....+++..++...+.+.+++||..|+.+.+
T Consensus 140 ~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~ 218 (276)
T KOG1578|consen 140 VGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAF 218 (276)
T ss_pred ccchHHHHHHHhccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999877665 4589999999888888888887788999999999999999
Q ss_pred HHHHHHHhcCHhHHHHHhCCceEEEEEEEEcCCCeEEEEeecCCCCcccccccCcceeccCCCCC
Q 023743 214 SRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 278 (278)
Q Consensus 214 ~~qv~~L~~~p~I~~~v~~g~L~I~G~~YDl~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (278)
..++.+|.+||++++++..|.+++||++||+..|++++|.+| |..+..+.+..+.+|+
T Consensus 219 ~~s~~~l~sy~~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld-------ekt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 219 LVSLARLLSYPFVREAVVKGFLQVHGGYYNFSKGTKEFWELD-------EKTVDGLKTEKRSVYS 276 (276)
T ss_pred HHHHHHHhcChHHHHHHhhcceeeeeeeEEeccCceeEEEec-------cccccccccccccccC
Confidence 999999999999999999999999999999999999999999 2355567777777775
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=1.8e-43 Score=298.09 Aligned_cols=151 Identities=34% Similarity=0.606 Sum_probs=122.0
Q ss_pred EEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHhhhccC
Q 023743 91 FMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 170 (278)
Q Consensus 91 ~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~ 170 (278)
++||||||||++|+.+|+.+|||+||+||+||++++.+ .++++|||||+.+|++++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~---~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD---DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH-
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc---cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc-
Confidence 68999999999999999999999999999999998763 47999999999999999999999999999999876322
Q ss_pred cchhhhhHHHHHHhhHHHHHH-HhhhhcCC-CHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEEcCCCe
Q 023743 171 VDSRQSLTENWVVNAKVAKFR-TKAYTAHL-SFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCT 248 (278)
Q Consensus 171 ~~~~~~~i~~wl~~~~~a~~~-~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YDl~tG~ 248 (278)
..+.++.|+..+.++... ........ ++.. ....+++||++|+++|+++|+|++++++|+|.||||+||++||+
T Consensus 77 ---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ---EDGFLRDWLQKIRPALEECVDELLPSSWDFED-LDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ---TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHH-HHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ---ccchHHHHHHhhhhhHHHHHHHhhcccccHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 126899999988887665 22211111 2233 23448999999999999999999999999999999999999998
Q ss_pred E
Q 023743 249 F 249 (278)
Q Consensus 249 v 249 (278)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.9e-42 Score=279.64 Aligned_cols=119 Identities=43% Similarity=0.754 Sum_probs=111.9
Q ss_pred CCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHhh
Q 023743 87 QSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 87 Q~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
|+|+++||||||||++|+.+||++|||+||+||+||++++.+ .++++|||||+..||+++|+|||||+|||+++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~---~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD---LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc---ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH---
Confidence 899999999999999999999999999999999999999754 36999999999999999999999999999975
Q ss_pred hccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEEcCC
Q 023743 167 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLN 246 (278)
Q Consensus 167 ~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YDl~t 246 (278)
..++||++|+++|+++|+++++++.+++.|||++||++|
T Consensus 75 -----------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~t 113 (119)
T cd00382 75 -----------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIET 113 (119)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCC
Confidence 246799999999999999999999999999999999999
Q ss_pred CeEEEE
Q 023743 247 CTFEKW 252 (278)
Q Consensus 247 G~ve~~ 252 (278)
|+++++
T Consensus 114 G~v~~~ 119 (119)
T cd00382 114 GKLEVL 119 (119)
T ss_pred CEEEeC
Confidence 999864
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.5e-39 Score=270.63 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=112.4
Q ss_pred CCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHhh
Q 023743 87 QSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 87 Q~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
+.++++||||||||++|+.+||++|||+||+|||||+|++ ++++||+||+.+||+++|+|||||+|||++++.+
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 4689999999999999999999999999999999999986 5899999999999999999999999999998753
Q ss_pred hccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhcCHhHHHHHhCCceEEEEEEEEcCC
Q 023743 167 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLN 246 (278)
Q Consensus 167 ~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~p~I~~~v~~g~L~I~G~~YDl~t 246 (278)
. +..|+............ ............++||++|+++|+++|+|++ +++||||+||++|
T Consensus 75 ~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~t 136 (142)
T cd03379 75 E----------LKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKT 136 (142)
T ss_pred H----------HHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCC
Confidence 2 33455421110000000 0111111224568999999999999999987 5899999999999
Q ss_pred CeEEEE
Q 023743 247 CTFEKW 252 (278)
Q Consensus 247 G~ve~~ 252 (278)
|+++.+
T Consensus 137 G~v~~v 142 (142)
T cd03379 137 GKLTEV 142 (142)
T ss_pred CEEEeC
Confidence 999863
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=97.90 E-value=5.1e-07 Score=82.75 Aligned_cols=104 Identities=24% Similarity=0.349 Sum_probs=78.7
Q ss_pred HhhhccCCCcEEEEeccCCCCChhhh----------------hCCCCCceEEEecccCCCCCCCCC-C-----chhhhHH
Q 023743 81 QNLAKAQSPKFMVIACADSRVCPSYI----------------LGLQPGETFMIRNVANLVPPLENG-P-----SETNAAL 138 (278)
Q Consensus 81 ~~la~gQ~P~~lvItCsDSRV~pe~i----------------~~~~pGdlFVvRNaGN~V~~~~~~-~-----~~~~asL 138 (278)
+++-.-++|.+..++|+|||+-|... +....||.|++||.||..+..... . +--.++|
T Consensus 20 ~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i 99 (276)
T KOG1578|consen 20 EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLAL 99 (276)
T ss_pred HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceEE
Confidence 45556789999999999999999777 667899999999999999864321 1 1123567
Q ss_pred HHHHHhcCccEEEEEecCcchhHHHHhhhccCc----ch-hhhhHHHHHHh
Q 023743 139 EFAVNTLEVQNILVIGHSDCGGIQALMRMQDDV----DS-RQSLTENWVVN 184 (278)
Q Consensus 139 EyAv~~L~vk~IVV~GHt~CGav~Aa~~~~~~~----~~-~~~~i~~wl~~ 184 (278)
+-|+..-...+|++|||++|-++.......... .. ..+.++.|+..
T Consensus 100 ~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 100 ECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred EeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 778888889999999999999999876654311 00 12578888864
No 17
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=58.18 E-value=8.3 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.026 Sum_probs=17.9
Q ss_pred eEEEEEEEEcCCCeEEEEeec
Q 023743 235 LFIHGGYYDLLNCTFEKWTLD 255 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~~ 255 (278)
|.|+||+++..+|.|+.+-.-
T Consensus 30 lgl~G~V~N~~DGsVeiva~G 50 (92)
T COG1254 30 LGLTGWVKNLDDGSVEIVAEG 50 (92)
T ss_pred CCCEEEEEECCCCeEEEEEEc
Confidence 689999999999999966543
No 18
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=57.90 E-value=19 Score=38.48 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHHhcCHhHHHHHhCCceE------EEEEEEEcCCCeEEEEeecC
Q 023743 218 LNLLTYPWIEERVRKELLF------IHGGYYDLLNCTFEKWTLDY 256 (278)
Q Consensus 218 ~~L~~~p~I~~~v~~g~L~------I~G~~YDl~tG~ve~~~~~~ 256 (278)
..|...|.||+.+++..|. .+|+..|..|-.|+.++.|.
T Consensus 539 A~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 539 AALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 3455667777777665444 69999999999999887775
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=47.89 E-value=1.1e+02 Score=25.13 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=65.0
Q ss_pred hhccCCCcEEEEeccCCCCChhhhhCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHH
Q 023743 83 LAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQ 162 (278)
Q Consensus 83 la~gQ~P~~lvItCsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~ 162 (278)
+..|-.|.+.++-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++-
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~------el~~ai~~a~~~~~~~~I~V~GEEDL~~lP 78 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE------ELIEAIKKALESGKPVVIFVDGEEDLAVLP 78 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH------HHHHHHHHHHhCCCCEEEEEeChHHHHHHH
Confidence 45788999999999888887655444 66788999999999986 688899999888788899999999988888
Q ss_pred HHhhhc
Q 023743 163 ALMRMQ 168 (278)
Q Consensus 163 Aa~~~~ 168 (278)
+.+-.+
T Consensus 79 ail~aP 84 (121)
T PF04019_consen 79 AILYAP 84 (121)
T ss_pred HHHhCC
Confidence 766544
No 20
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=44.40 E-value=19 Score=30.50 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=28.8
Q ss_pred hhhhHHHHHHHh-----cCccEEEEEecCcchhHHHHhh
Q 023743 133 ETNAALEFAVNT-----LEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 133 ~~~asLEyAv~~-----L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
++.++++|...+ ...+.|+|+|||..|.+.+.+.
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 678899999988 7789999999999998776543
No 21
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=41.04 E-value=32 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.5
Q ss_pred HHHHhcCHhHHHHHhCCceEEEEE
Q 023743 217 ILNLLTYPWIEERVRKELLFIHGG 240 (278)
Q Consensus 217 v~~L~~~p~I~~~v~~g~L~I~G~ 240 (278)
|..|.++|.+-+.+++|+..+.|.
T Consensus 6 V~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 6 VNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHChHHHHHHHcCCeeEecC
Confidence 677889999999999999999885
No 22
>PLN02621 nicotinamidase
Probab=39.06 E-value=1.6e+02 Score=25.44 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=25.2
Q ss_pred CCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecC
Q 023743 110 QPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHS 156 (278)
Q Consensus 110 ~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt 156 (278)
.++|..+.+.--+-... .-|+.-....|+++|||+|=.
T Consensus 99 ~~~~~vi~K~~~saf~~---------t~L~~~L~~~gi~~lvi~Gv~ 136 (197)
T PLN02621 99 TGPDEVVEKSTYSAFYN---------TRLEERLRKIGVKEVIVTGVM 136 (197)
T ss_pred CCCCEEEECCCcCCCCC---------CcHHHHHHHCCCCEEEEEecc
Confidence 46777666653333321 136666788999999999954
No 23
>PRK14432 acylphosphatase; Provisional
Probab=37.31 E-value=39 Score=26.22 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=17.1
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.++.+|.|+.+..
T Consensus 28 lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 28 MKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 67999999999999886543
No 24
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=36.67 E-value=20 Score=30.39 Aligned_cols=15 Identities=47% Similarity=0.880 Sum_probs=12.9
Q ss_pred ccEEEEEecCcchhH
Q 023743 147 VQNILVIGHSDCGGI 161 (278)
Q Consensus 147 vk~IVV~GHt~CGav 161 (278)
+.+|.|+||.+||=.
T Consensus 3 ~~~I~i~G~~~sGKT 17 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKT 17 (188)
T ss_dssp EEEEEEEESTTSSHH
T ss_pred EEEEEEECCCCCCcE
Confidence 678999999999933
No 25
>PRK11440 putative hydrolase; Provisional
Probab=34.61 E-value=82 Score=26.87 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=33.9
Q ss_pred hCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHH
Q 023743 107 LGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQA 163 (278)
Q Consensus 107 ~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~A 163 (278)
+...+||.++.++.-+-.... .|+.-....|++.|||+|=+-..-|.+
T Consensus 90 l~~~~~d~vi~K~~~saF~~T---------~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYGT---------DLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCCC---------CHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 455688988888765554432 366667889999999999666555544
No 26
>PRK14445 acylphosphatase; Provisional
Probab=34.00 E-value=60 Score=24.95 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=16.4
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|.|+...
T Consensus 30 ~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 30 LNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred CCCEEEEEECCCCeEEEEE
Confidence 7899999999999888543
No 27
>PRK14423 acylphosphatase; Provisional
Probab=33.71 E-value=59 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=16.6
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.++.+|.|+..-
T Consensus 31 lgl~G~V~N~~dG~Vei~~ 49 (92)
T PRK14423 31 LGVDGWVRNLDDGRVEAVF 49 (92)
T ss_pred cCCEEEEEECCCCeEEEEE
Confidence 7899999999999888554
No 28
>PRK14440 acylphosphatase; Provisional
Probab=33.44 E-value=52 Score=25.35 Aligned_cols=20 Identities=25% Similarity=0.077 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+.+-.
T Consensus 29 ~gl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14440 29 LGIKGYAKNLPDGSVEVVAE 48 (90)
T ss_pred cCCEEEEEECCCCCEEEEEE
Confidence 67999999999999886543
No 29
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=33.02 E-value=27 Score=29.65 Aligned_cols=13 Identities=46% Similarity=0.866 Sum_probs=12.3
Q ss_pred ccEEEEEecCcch
Q 023743 147 VQNILVIGHSDCG 159 (278)
Q Consensus 147 vk~IVV~GHt~CG 159 (278)
+++|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6899999999999
No 30
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=32.69 E-value=90 Score=27.36 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=59.0
Q ss_pred CCccchHHHHHHHHHHHHccccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhhC------CCCCceEE-Eeccc
Q 023743 49 AKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILG------LQPGETFM-IRNVA 121 (278)
Q Consensus 49 ~~~~~~~~~l~~l~~rf~~~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~~------~~pGdlFV-vRNaG 121 (278)
-+..+|+-+-.+|.-||..-++..+ . -.=+-...++||.=--...+.+|. -+|||+++ +-+-|
T Consensus 51 gSaadAqHfaael~gRf~~eR~~lp--------a--IaLt~dsS~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSG 120 (176)
T COG0279 51 GSAADAQHFAAELTGRFEKERPSLP--------A--IALSTDSSVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSG 120 (176)
T ss_pred cchhhHHHHHHHHhhHHHhcCCCCC--------e--eEeecccHHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 3444566666666666644332111 1 111234456677777777888884 26999876 56666
Q ss_pred CCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHH
Q 023743 122 NLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQAL 164 (278)
Q Consensus 122 N~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa 164 (278)
|-- +++.+++-|.. +++..|...|-++ |.++..
T Consensus 121 NS~--------nVl~Ai~~Ak~-~gm~vI~ltG~~G-G~~~~~ 153 (176)
T COG0279 121 NSK--------NVLKAIEAAKE-KGMTVIALTGKDG-GKLAGL 153 (176)
T ss_pred CCH--------HHHHHHHHHHH-cCCEEEEEecCCC-cccccc
Confidence 543 58889998866 7888888888654 445433
No 31
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=31.73 E-value=1.5e+02 Score=24.37 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=36.3
Q ss_pred CCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhHHHHh
Q 023743 111 PGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALM 165 (278)
Q Consensus 111 pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~ 165 (278)
+||..+.++--|..... .|+.-+...|+++|+|+|-.-.+-|.++.
T Consensus 85 ~~~~vi~K~~~saf~~t---------~L~~~L~~~gi~~vil~G~~t~~CV~~Ta 130 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT---------DLDEILRKRGIDTVILCGVATDVCVLATA 130 (174)
T ss_dssp TTSEEEEESSSSTTTTS---------SHHHHHHHTTESEEEEEEESTTTHHHHHH
T ss_pred cccceEEeecccccccc---------cccccccccccceEEEcccccCcEEehhH
Confidence 39999999977777432 36777888999999999988888776654
No 32
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=31.68 E-value=1.6e+02 Score=24.68 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=18.5
Q ss_pred CchhhhHHHHHHHhcCccEEEEEe
Q 023743 131 PSETNAALEFAVNTLEVQNILVIG 154 (278)
Q Consensus 131 ~~~~~asLEyAv~~L~vk~IVV~G 154 (278)
.+-+..++++| .+||.+.|+.+|
T Consensus 140 ~sV~~~a~~lA-~~lG~~~I~L~G 162 (170)
T PF01973_consen 140 GSVANTALQLA-YYLGFKPIYLIG 162 (170)
T ss_pred ccHHHHHHHHH-HHHCCCcEEEEe
Confidence 34566888888 569999999998
No 33
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=31.14 E-value=21 Score=26.88 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.4
Q ss_pred eEEEEEEEEcCCCeEE
Q 023743 235 LFIHGGYYDLLNCTFE 250 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve 250 (278)
...|||.||+.||++.
T Consensus 64 Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 64 CPCHGWRFDLDTGECV 79 (97)
T ss_dssp ETTTTEEEETTTSBEE
T ss_pred eCCcCCEEeCCCceEe
Confidence 4479999999999765
No 34
>PRK14429 acylphosphatase; Provisional
Probab=30.92 E-value=65 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.014 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+....
T Consensus 28 ~gl~G~V~N~~dG~Vei~~q 47 (90)
T PRK14429 28 LGVTGYVTNCEDGSVEILAQ 47 (90)
T ss_pred hCCEEEEEECCCCeEEEEEE
Confidence 67999999999998885443
No 35
>PRK14430 acylphosphatase; Provisional
Probab=30.42 E-value=60 Score=25.12 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=16.2
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|+|+..-
T Consensus 30 lgl~G~VrN~~dGsVei~~ 48 (92)
T PRK14430 30 LGLGGWVRNRADGTVEVMA 48 (92)
T ss_pred hCCEEEEEECCCCcEEEEE
Confidence 6799999999999888543
No 36
>PRK14441 acylphosphatase; Provisional
Probab=29.74 E-value=82 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=17.4
Q ss_pred ceEEEEEEEEcCCCeEEEEee
Q 023743 234 LLFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 234 ~L~I~G~~YDl~tG~ve~~~~ 254 (278)
++.|.||+.+..+|+|+.+-.
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~q 50 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEAE 50 (93)
T ss_pred hcCcEEEEEECCCCEEEEEEE
Confidence 378999999999998885543
No 37
>PRK14448 acylphosphatase; Provisional
Probab=29.18 E-value=64 Score=24.80 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.++.+|.|+.+-.
T Consensus 28 lgl~G~V~N~~dG~Vei~~~ 47 (90)
T PRK14448 28 IGIKGYVKNRPDGSVEVVAV 47 (90)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 67999999999999885543
No 38
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=28.40 E-value=69 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=24.8
Q ss_pred hhhHHHHHHHhcCccEEEEEecCcchhHHHHhh
Q 023743 134 TNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 134 ~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
....+...+..++.+.++|+|||--|.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 82 FVDELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 334455557788999999999999998776543
No 39
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=27.92 E-value=68 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHhcCccEEEEEecCcchhHHHHh
Q 023743 133 ETNAALEFAVNTLEVQNILVIGHSDCGGIQALM 165 (278)
Q Consensus 133 ~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~ 165 (278)
+....|.-.+..++.+.|+++|||-=|.+...+
T Consensus 51 ~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 51 DYAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccccc
Confidence 345667778899999999999999877665543
No 40
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=27.81 E-value=72 Score=24.15 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=14.4
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|.|+..-
T Consensus 30 ~gl~G~V~N~~dg~V~i~~ 48 (91)
T PF00708_consen 30 LGLTGWVRNLPDGSVEIEA 48 (91)
T ss_dssp TT-EEEEEE-TTSEEEEEE
T ss_pred hCCceEEEECCCCEEEEEE
Confidence 5799999999999888554
No 41
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=27.63 E-value=33 Score=28.14 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=11.1
Q ss_pred cEEEEEecCcch
Q 023743 148 QNILVIGHSDCG 159 (278)
Q Consensus 148 k~IVV~GHt~CG 159 (278)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 579999999999
No 42
>PRK14434 acylphosphatase; Provisional
Probab=27.56 E-value=86 Score=24.23 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=16.6
Q ss_pred eE-EEEEEEEcCCCeEEEEee
Q 023743 235 LF-IHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~-I~G~~YDl~tG~ve~~~~ 254 (278)
+. |.||+.+..+|.|+....
T Consensus 28 lg~l~G~V~N~~dGsVei~~q 48 (92)
T PRK14434 28 IGDIYGRVWNNDDGTVEILAQ 48 (92)
T ss_pred cCCcEEEEEECCCCCEEEEEE
Confidence 78 999999999998875443
No 43
>PRK14436 acylphosphatase; Provisional
Probab=27.46 E-value=82 Score=24.27 Aligned_cols=20 Identities=20% Similarity=0.086 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+..-.
T Consensus 30 l~l~G~V~N~~dG~Vei~~q 49 (91)
T PRK14436 30 LGVNGWVRNLPDGSVEAVLE 49 (91)
T ss_pred cCCEEEEEECCCCcEEEEEE
Confidence 67999999999998885543
No 44
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=27.42 E-value=71 Score=28.85 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHhc-CccEEEEEecCcchhHHHH
Q 023743 133 ETNAALEFAVNTL-EVQNILVIGHSDCGGIQAL 164 (278)
Q Consensus 133 ~~~asLEyAv~~L-~vk~IVV~GHt~CGav~Aa 164 (278)
++.+++++-...+ +.+.|+++|||- ||.-++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~ 115 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAAL 115 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHH
Confidence 4566676654444 678899999998 555544
No 45
>PRK14449 acylphosphatase; Provisional
Probab=26.62 E-value=87 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.091 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+....
T Consensus 29 lgl~G~V~N~~dG~Vei~~~ 48 (90)
T PRK14449 29 LGITGYAENLYDGSVEVVAE 48 (90)
T ss_pred cCCEEEEEECCCCeEEEEEE
Confidence 67999999999998885543
No 46
>PRK03592 haloalkane dehalogenase; Provisional
Probab=26.61 E-value=70 Score=28.67 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.0
Q ss_pred hhhHHHHHHHhcCccEEEEEecCcchhHHHHhh
Q 023743 134 TNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 134 ~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
...-+.--+..|+.+.++|+|||-.|.+...+.
T Consensus 79 ~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 79 HARYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 344556667889999999999999998876554
No 47
>PRK14425 acylphosphatase; Provisional
Probab=26.14 E-value=87 Score=24.29 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+.+..
T Consensus 32 ~gl~G~V~N~~dGsVei~~q 51 (94)
T PRK14425 32 LGLTGWVRNESDGSVTALIA 51 (94)
T ss_pred hCCEEEEEECCCCeEEEEEE
Confidence 67999999999999886543
No 48
>PRK14451 acylphosphatase; Provisional
Probab=25.91 E-value=81 Score=24.20 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+..-.
T Consensus 29 ~gl~G~V~N~~dG~Vei~~q 48 (89)
T PRK14451 29 LMISGWARNLADGRVEVFAC 48 (89)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 67999999999999886543
No 49
>PRK14444 acylphosphatase; Provisional
Probab=25.71 E-value=85 Score=24.20 Aligned_cols=19 Identities=16% Similarity=-0.005 Sum_probs=16.2
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.++.+|.|+..-
T Consensus 30 lgl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14444 30 AGVKGWVRNLSDGRVEAVF 48 (92)
T ss_pred hCCEEEEEECCCCcEEEEE
Confidence 6899999999999887543
No 50
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=25.70 E-value=27 Score=26.39 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.7
Q ss_pred eEEEEEEEEcCCCeEE
Q 023743 235 LFIHGGYYDLLNCTFE 250 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve 250 (278)
...|||.||+.||...
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 4589999999999764
No 51
>PRK14422 acylphosphatase; Provisional
Probab=25.48 E-value=85 Score=24.30 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.4
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|.|+...
T Consensus 32 ~gl~G~V~N~~dG~Vei~~ 50 (93)
T PRK14422 32 LGLTGYAANLADGRVQVVA 50 (93)
T ss_pred cCCEEEEEECCCCCEEEEE
Confidence 6899999999999888544
No 52
>PRK14433 acylphosphatase; Provisional
Probab=25.41 E-value=86 Score=23.93 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=16.8
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.++.+|.|+.+-.
T Consensus 27 ~~l~G~V~N~~dG~Vei~~~ 46 (87)
T PRK14433 27 LGLSGYAENLSDGRVEVVAE 46 (87)
T ss_pred cCCEEEEEECCCCCEEEEEE
Confidence 68999999999998885543
No 53
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=25.06 E-value=40 Score=27.66 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.6
Q ss_pred eEEEEEEEEcCCCeEEEE
Q 023743 235 LFIHGGYYDLLNCTFEKW 252 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~ 252 (278)
...|||-||+.||++..+
T Consensus 76 Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 76 CWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred ecCCccEEeCCCccEEEc
Confidence 458999999999998765
No 54
>PRK14426 acylphosphatase; Provisional
Probab=25.01 E-value=91 Score=24.01 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=16.2
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|.|+..-
T Consensus 30 ~gl~G~V~N~~dG~Vei~~ 48 (92)
T PRK14426 30 LGLTGYAKNLDDGSVEVVA 48 (92)
T ss_pred hCCEEEEEECCCCcEEEEE
Confidence 6899999999999887443
No 55
>COG4027 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.78 E-value=53 Score=28.73 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=60.9
Q ss_pred Ccccchhhhhcc-cccccCCccchHHHHHHHHHHHHc---cccccchhchHHHHhhhccCCCcEEEEeccCCCCChhhhh
Q 023743 32 TAAALTRDRTSY-KVQDGAKSCGGLDYFEEMKQRFLS---FKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYIL 107 (278)
Q Consensus 32 ~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~l~~rf~~---~~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~i~ 107 (278)
-.|+|+.-+... +.-+| -.++..+.++.+.+||+- |+...|...|.....|...|.-++.+.=---+|-..+.++
T Consensus 76 ~~p~fs~v~v~KakVRN~-Rv~eiy~~ie~~rAr~RL~v~w~~~~~~~rpg~~~~L~~npd~D~~f~~G~g~~k~~~l~~ 154 (194)
T COG4027 76 WMPSFSAVLVTKAKVRNM-RVDEIYDNIEDIRARFRLGVAWRRSAYELRPGNVEGLEENPDYDIYFAWGEGFRKNMELLL 154 (194)
T ss_pred cCCchHHHHhhHHHhhhe-eHHHHHHHHHhhhhheeeeeeeeccccccCCCCccCcccCCCccEEEEecccHHHHHHHHh
Confidence 357787777665 22222 456788899999999875 4333443344444456666666666666666777788888
Q ss_pred CCCCCc-eEEEecccCC
Q 023743 108 GLQPGE-TFMIRNVANL 123 (278)
Q Consensus 108 ~~~pGd-lFVvRNaGN~ 123 (278)
+..||+ +|++|-.||.
T Consensus 155 ~~~pggaal~lrk~gn~ 171 (194)
T COG4027 155 EEDPGGAALVLRKTGNE 171 (194)
T ss_pred ccCCCceEEEEEccCCE
Confidence 877765 6899999994
No 56
>PRK14420 acylphosphatase; Provisional
Probab=24.59 E-value=97 Score=23.66 Aligned_cols=19 Identities=16% Similarity=-0.120 Sum_probs=16.2
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|.|+...
T Consensus 28 ~gl~G~V~N~~dG~Vei~~ 46 (91)
T PRK14420 28 RKLTGWVKNRDDGTVEIEA 46 (91)
T ss_pred cCCEEEEEECCCCcEEEEE
Confidence 6799999999999888544
No 57
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=24.50 E-value=74 Score=26.42 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.8
Q ss_pred chhhhHHHHHHHhcCccEEEEEecCcchhHHHH
Q 023743 132 SETNAALEFAVNTLEVQNILVIGHSDCGGIQAL 164 (278)
Q Consensus 132 ~~~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa 164 (278)
.+..+.+++-...|+++.|.++|||-=|.+...
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~ 60 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLALE 60 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHHHH
Confidence 467789999999999999999999984444433
No 58
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.49 E-value=43 Score=30.94 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=13.1
Q ss_pred ccEEEEEecCcchhHH
Q 023743 147 VQNILVIGHSDCGGIQ 162 (278)
Q Consensus 147 vk~IVV~GHt~CGav~ 162 (278)
-+-|.|+|||+||=-+
T Consensus 29 GEfvsilGpSGcGKST 44 (248)
T COG1116 29 GEFVAILGPSGCGKST 44 (248)
T ss_pred CCEEEEECCCCCCHHH
Confidence 4779999999999544
No 59
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=24.46 E-value=80 Score=28.25 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=24.2
Q ss_pred hhHHHHHHHhcCccEEEEEecCcchhHHHHhh
Q 023743 135 NAALEFAVNTLEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 135 ~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
...|.-.+..++.+.++++|||-.|.+...+.
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 34455556678899999999999998876443
No 60
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=24.03 E-value=39 Score=23.50 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=11.0
Q ss_pred EEEEEEcCCCeEE
Q 023743 238 HGGYYDLLNCTFE 250 (278)
Q Consensus 238 ~G~~YDl~tG~ve 250 (278)
-|.-||++||+|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4789999999875
No 61
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=23.67 E-value=27 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.5
Q ss_pred eEEEEEEEEcCCCeEE
Q 023743 235 LFIHGGYYDLLNCTFE 250 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve 250 (278)
...|||.||+.||.+.
T Consensus 59 CP~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 59 CPWHGACFNLRTGDIE 74 (95)
T ss_pred cCCCCCEEECCCCcCc
Confidence 4589999999999755
No 62
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=23.56 E-value=48 Score=26.63 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=11.8
Q ss_pred cEEEEEecCcchhH
Q 023743 148 QNILVIGHSDCGGI 161 (278)
Q Consensus 148 k~IVV~GHt~CGav 161 (278)
+.|+|+|+++||=-
T Consensus 1 ~~i~iiG~~~~GKt 14 (168)
T cd01887 1 PVVTVMGHVDHGKT 14 (168)
T ss_pred CEEEEEecCCCCHH
Confidence 46999999999943
No 63
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=23.53 E-value=50 Score=28.06 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=13.6
Q ss_pred CccEEEEEecCcchhH
Q 023743 146 EVQNILVIGHSDCGGI 161 (278)
Q Consensus 146 ~vk~IVV~GHt~CGav 161 (278)
+...|+|+|+++||=-
T Consensus 40 ~~~~I~iiG~~g~GKS 55 (204)
T cd01878 40 GIPTVALVGYTNAGKS 55 (204)
T ss_pred CCCeEEEECCCCCCHH
Confidence 4689999999999943
No 64
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=23.42 E-value=42 Score=27.12 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.4
Q ss_pred EEEEEecCcchhHH
Q 023743 149 NILVIGHSDCGGIQ 162 (278)
Q Consensus 149 ~IVV~GHt~CGav~ 162 (278)
.|+|+||.+||=-.
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 48999999999443
No 65
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=23.41 E-value=75 Score=23.32 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCHhHHHHHhC
Q 023743 211 ESISRSILNLLTYPWIEERVRK 232 (278)
Q Consensus 211 ~nV~~qv~~L~~~p~I~~~v~~ 232 (278)
-+|+.++..||+.||-|+.|++
T Consensus 40 PsikSSLkFLRkTpWAR~KVE~ 61 (64)
T PF09905_consen 40 PSIKSSLKFLRKTPWAREKVEN 61 (64)
T ss_dssp --HHHHHHHHHHSHHHHHHHHH
T ss_pred CchHHHHHHHhcCHhHHHHHHH
Confidence 3678899999999999998763
No 66
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=23.08 E-value=50 Score=30.30 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.5
Q ss_pred ccEEEEEecCcchhHH
Q 023743 147 VQNILVIGHSDCGGIQ 162 (278)
Q Consensus 147 vk~IVV~GHt~CGav~ 162 (278)
.++|.|+||.++|=.+
T Consensus 2 ~Rni~ivGh~~~GKTT 17 (267)
T cd04169 2 RRTFAIISHPDAGKTT 17 (267)
T ss_pred ccEEEEEcCCCCCHHH
Confidence 5899999999999543
No 67
>PRK14446 acylphosphatase; Provisional
Probab=22.81 E-value=1.2e+02 Score=23.29 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=17.6
Q ss_pred ceEEEEEEEEcCCCeEEEEee
Q 023743 234 LLFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 234 ~L~I~G~~YDl~tG~ve~~~~ 254 (278)
++.|.||+.+..+|.|+..-.
T Consensus 27 ~lgl~G~V~N~~dGsVei~~q 47 (88)
T PRK14446 27 ALGLVGHARNQADGSVEVVAA 47 (88)
T ss_pred eCCeEEEEEECCCCCEEEEEE
Confidence 478999999999998886543
No 68
>PRK14438 acylphosphatase; Provisional
Probab=22.75 E-value=1.1e+02 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+-++.+|.|+.+..
T Consensus 29 ~gl~G~V~N~~dG~Vei~~q 48 (91)
T PRK14438 29 LNVSGWVKNLPNGSVQGCFE 48 (91)
T ss_pred cCCEEEEEECCCCEEEEEEE
Confidence 67999999999999885543
No 69
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=22.34 E-value=46 Score=28.87 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.7
Q ss_pred cEEEEEecCcchhH
Q 023743 148 QNILVIGHSDCGGI 161 (278)
Q Consensus 148 k~IVV~GHt~CGav 161 (278)
++|+|+||.++|=-
T Consensus 1 rnv~iiG~~~~GKT 14 (213)
T cd04167 1 RNVAIAGHLHHGKT 14 (213)
T ss_pred CcEEEEcCCCCCHH
Confidence 47999999999943
No 70
>PRK14437 acylphosphatase; Provisional
Probab=22.01 E-value=1e+02 Score=24.77 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=16.9
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+....
T Consensus 49 lgL~G~V~N~~dG~Vei~~q 68 (109)
T PRK14437 49 LQLTGWVKNLSHGDVELVAC 68 (109)
T ss_pred hCCeEEEEECCCCCEEEEEE
Confidence 67999999999998886543
No 71
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.91 E-value=1.5e+02 Score=24.05 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=23.9
Q ss_pred hCCCCCceEEE-ecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEe
Q 023743 107 LGLQPGETFMI-RNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIG 154 (278)
Q Consensus 107 ~~~~pGdlFVv-RNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~G 154 (278)
.+..|||++++ -+-||-- .++.++++| ...|.+.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~--------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP--------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH--------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH--------HHHHHHHHH-HHCCCEEEEEeC
Confidence 34789998876 4445442 477888888 557999988865
No 72
>PRK14427 acylphosphatase; Provisional
Probab=21.54 E-value=1.3e+02 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+-++.+|.|+.+..
T Consensus 32 lgl~G~V~N~~dGsVei~~q 51 (94)
T PRK14427 32 LGLTGTVRNLDDGSVALVAE 51 (94)
T ss_pred cCCEEEEEECCCCeEEEEEE
Confidence 78999999999998885543
No 73
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=21.05 E-value=1.4e+02 Score=23.35 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=24.6
Q ss_pred hhhHHHHHHHhcCccEEEEEecCcchhHHHHhh
Q 023743 134 TNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 166 (278)
Q Consensus 134 ~~asLEyAv~~L~vk~IVV~GHt~CGav~Aa~~ 166 (278)
....|.-.+...+-..|+|+|||==|++..++.
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 445555566666778999999999888876543
No 74
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=21.04 E-value=40 Score=26.05 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.5
Q ss_pred eEEEEEEEEcCCCeEE
Q 023743 235 LFIHGGYYDLLNCTFE 250 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve 250 (278)
...|||.||+.||+..
T Consensus 62 CP~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 62 CPKHAGCFDYRTGEAL 77 (101)
T ss_pred CCccCCEEECCCCccc
Confidence 4589999999999764
No 75
>PRK14421 acylphosphatase; Provisional
Probab=21.04 E-value=1.2e+02 Score=23.86 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=16.4
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+-++.+|.|+...
T Consensus 30 lgL~G~V~N~~dG~Vei~~ 48 (99)
T PRK14421 30 LGLEGWVRNRRDGSVEALF 48 (99)
T ss_pred hCCEEEEEECCCCEEEEEE
Confidence 6799999999999888554
No 76
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=20.94 E-value=2.1e+02 Score=24.17 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=30.2
Q ss_pred hCCCCCceEEEecccCCCCCCCCCCchhhhHHHHHHHhcCccEEEEEecCcchhH
Q 023743 107 LGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGI 161 (278)
Q Consensus 107 ~~~~pGdlFVvRNaGN~V~~~~~~~~~~~asLEyAv~~L~vk~IVV~GHt~CGav 161 (278)
|.-.+||..+.++.=+-... ..|+.-+...|+++|||+|=.-..-|
T Consensus 83 l~~~~~~~v~~K~~~saF~~---------t~L~~~L~~~gi~~vvi~G~~t~~CV 128 (179)
T cd01015 83 LAPQEDEMVLVKKYASAFFG---------TSLAATLTARGVDTLIVAGCSTSGCI 128 (179)
T ss_pred cCCCCCCEEEecCccCCccC---------CcHHHHHHHcCCCEEEEeeecccHhH
Confidence 34467887766664332221 25788888999999999996544433
No 77
>PRK10566 esterase; Provisional
Probab=20.92 E-value=1.2e+02 Score=26.34 Aligned_cols=27 Identities=19% Similarity=-0.020 Sum_probs=17.0
Q ss_pred hHHHHHHHh--cCccEEEEEecCcchhHH
Q 023743 136 AALEFAVNT--LEVQNILVIGHSDCGGIQ 162 (278)
Q Consensus 136 asLEyAv~~--L~vk~IVV~GHt~CGav~ 162 (278)
+.+++.... +..+.|+|+|||-=|.+.
T Consensus 93 ~~~~~l~~~~~~~~~~i~v~G~S~Gg~~a 121 (249)
T PRK10566 93 TLRAAIREEGWLLDDRLAVGGASMGGMTA 121 (249)
T ss_pred HHHHHHHhcCCcCccceeEEeecccHHHH
Confidence 344444433 345789999999944444
No 78
>PRK14428 acylphosphatase; Provisional
Probab=20.84 E-value=1.3e+02 Score=23.58 Aligned_cols=20 Identities=15% Similarity=-0.009 Sum_probs=17.0
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.+..+|.|+....
T Consensus 34 lgL~G~V~N~~dGsVei~~q 53 (97)
T PRK14428 34 LGVQGWVRNCRDGSVELEAQ 53 (97)
T ss_pred cCCEEEEEECCCCEEEEEEE
Confidence 68999999999999886543
No 79
>PRK14452 acylphosphatase; Provisional
Probab=20.29 E-value=1.2e+02 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=16.6
Q ss_pred eEEEEEEEEcCCCeEEEEe
Q 023743 235 LFIHGGYYDLLNCTFEKWT 253 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~ 253 (278)
+.|.||+.+..+|.|+...
T Consensus 46 lgL~G~V~N~~dGsVeI~~ 64 (107)
T PRK14452 46 LGLSGWVRNLSDGSVEVQA 64 (107)
T ss_pred hCCEEEEEECCCCCEEEEE
Confidence 6799999999999988654
No 80
>PRK14443 acylphosphatase; Provisional
Probab=20.21 E-value=1.4e+02 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=17.1
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+-++.+|.|+..-.
T Consensus 30 ~gl~G~V~N~~dG~Vei~~q 49 (93)
T PRK14443 30 YDISGTVKNLDDGSVEIHAI 49 (93)
T ss_pred cCCEEEEEECCCCEEEEEEE
Confidence 68999999999999886653
No 81
>PRK14424 acylphosphatase; Provisional
Probab=20.02 E-value=1.3e+02 Score=23.47 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=16.7
Q ss_pred eEEEEEEEEcCCCeEEEEee
Q 023743 235 LFIHGGYYDLLNCTFEKWTL 254 (278)
Q Consensus 235 L~I~G~~YDl~tG~ve~~~~ 254 (278)
+.|.||+.++.+|.|+....
T Consensus 33 ~gl~G~V~N~~dG~Vei~~q 52 (94)
T PRK14424 33 LGLRGWVANLEDGTVEAMIQ 52 (94)
T ss_pred cCCeEEEEECCCCCEEEEEE
Confidence 67999999999998875543
Done!