Query 023744
Match_columns 278
No_of_seqs 237 out of 1242
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.4E-34 4.8E-39 229.7 9.5 105 9-113 1-105 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 2.6E-34 8.9E-39 236.0 8.9 112 2-113 17-128 (128)
3 3zqc_A MYB3; transcription-DNA 100.0 4.4E-34 1.5E-38 235.8 9.1 107 11-117 1-107 (131)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 5.3E-34 1.8E-38 227.7 8.9 103 12-114 1-103 (107)
5 3osg_A MYB21; transcription-DN 100.0 5.1E-33 1.7E-37 228.2 9.9 106 6-112 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.2E-32 1.4E-36 230.3 8.3 112 2-113 48-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 8E-30 2.7E-34 216.2 4.1 106 9-114 3-109 (159)
8 2dim_A Cell division cycle 5-l 99.8 3.7E-22 1.3E-26 147.8 4.2 66 7-72 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 9.3E-21 3.2E-25 155.2 4.3 77 38-114 1-78 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 5.4E-19 1.8E-23 158.4 5.9 105 8-112 4-200 (246)
11 2juh_A Telomere binding protei 99.7 7.1E-19 2.4E-23 143.5 3.7 83 6-88 11-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 2.2E-18 7.5E-23 129.1 3.6 63 49-113 8-70 (73)
13 2roh_A RTBP1, telomere binding 99.7 6.8E-18 2.3E-22 137.9 6.1 80 6-85 25-114 (122)
14 2d9a_A B-MYB, MYB-related prot 99.7 6.8E-18 2.3E-22 121.1 5.0 57 7-63 3-59 (60)
15 1gvd_A MYB proto-oncogene prot 99.7 1E-17 3.5E-22 116.9 4.5 52 10-61 1-52 (52)
16 1ity_A TRF1; helix-turn-helix, 99.7 8.3E-18 2.8E-22 124.1 4.2 65 4-68 2-68 (69)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 2.1E-17 7.2E-22 115.2 3.4 52 10-61 1-52 (52)
18 2din_A Cell division cycle 5-l 99.7 9.1E-17 3.1E-21 117.4 5.6 60 57-117 2-61 (66)
19 2cu7_A KIAA1915 protein; nucle 99.6 1.5E-16 5.1E-21 118.3 6.1 58 58-115 3-60 (72)
20 3sjm_A Telomeric repeat-bindin 99.6 8.2E-17 2.8E-21 117.5 3.1 54 10-63 9-64 (64)
21 2d9a_A B-MYB, MYB-related prot 99.6 2E-16 6.8E-21 113.4 4.2 56 59-114 3-59 (60)
22 1x41_A Transcriptional adaptor 99.6 2.6E-16 8.8E-21 113.2 3.6 54 8-61 4-57 (60)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 7.8E-16 2.7E-20 107.2 4.6 50 62-111 1-51 (52)
24 2din_A Cell division cycle 5-l 99.6 1.9E-16 6.4E-21 115.7 0.9 60 5-66 2-61 (66)
25 1w0t_A Telomeric repeat bindin 99.6 5.9E-16 2E-20 108.5 3.4 49 11-59 1-51 (53)
26 1gvd_A MYB proto-oncogene prot 99.6 1.6E-15 5.5E-20 105.7 4.3 50 62-111 1-51 (52)
27 1w0t_A Telomeric repeat bindin 99.6 1.8E-15 6.2E-20 106.0 4.5 50 63-112 1-53 (53)
28 1x41_A Transcriptional adaptor 99.6 2.1E-15 7.3E-20 108.3 4.8 53 59-111 3-56 (60)
29 1ity_A TRF1; helix-turn-helix, 99.6 2.8E-15 9.6E-20 110.4 5.5 60 57-116 3-65 (69)
30 2elk_A SPCC24B10.08C protein; 99.6 1.8E-15 6.2E-20 108.1 3.8 52 7-58 4-56 (58)
31 2dim_A Cell division cycle 5-l 99.5 2.3E-15 7.8E-20 111.1 4.1 57 59-115 4-61 (70)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1.4E-15 4.9E-20 113.6 2.3 61 7-67 3-68 (75)
33 2yum_A ZZZ3 protein, zinc fing 99.5 5.8E-15 2E-19 110.3 4.3 56 59-114 3-64 (75)
34 3sjm_A Telomeric repeat-bindin 99.5 1E-14 3.5E-19 106.4 4.7 52 62-113 9-63 (64)
35 2llk_A Cyclin-D-binding MYB-li 99.5 8.6E-15 2.9E-19 109.6 4.1 57 2-61 13-69 (73)
36 2cu7_A KIAA1915 protein; nucle 99.5 4.5E-15 1.6E-19 110.2 2.0 58 6-64 3-60 (72)
37 2ltp_A Nuclear receptor corepr 99.2 2.2E-15 7.5E-20 116.6 0.0 58 57-114 9-66 (89)
38 2ckx_A NGTRF1, telomere bindin 99.5 3.5E-14 1.2E-18 108.7 6.0 69 13-81 1-79 (83)
39 3zqc_A MYB3; transcription-DNA 99.5 1.1E-14 3.7E-19 119.6 3.4 87 2-93 44-130 (131)
40 2elk_A SPCC24B10.08C protein; 99.5 2.7E-14 9.2E-19 102.0 5.0 49 61-109 6-56 (58)
41 2aje_A Telomere repeat-binding 99.5 3.2E-14 1.1E-18 113.3 4.7 79 6-84 7-95 (105)
42 2yus_A SWI/SNF-related matrix- 99.4 2.3E-13 7.7E-18 103.2 4.9 52 6-58 12-63 (79)
43 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3E-13 1E-17 101.1 4.6 52 60-111 14-69 (73)
44 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.9E-13 9.9E-18 106.7 3.6 58 2-60 46-103 (105)
45 2yus_A SWI/SNF-related matrix- 99.3 5.3E-13 1.8E-17 101.2 3.2 48 61-108 15-62 (79)
46 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.2E-13 7.4E-18 108.2 1.0 58 2-60 43-100 (107)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.4E-13 1.5E-17 100.2 2.1 54 6-59 12-68 (73)
48 3osg_A MYB21; transcription-DN 99.3 1.3E-12 4.4E-17 106.6 4.9 57 59-115 6-62 (126)
49 2ltp_A Nuclear receptor corepr 99.0 2.1E-13 7.2E-18 105.4 0.0 53 6-59 10-62 (89)
50 1x58_A Hypothetical protein 49 99.3 2.9E-12 9.8E-17 92.7 5.0 51 62-112 6-59 (62)
51 2ckx_A NGTRF1, telomere bindin 99.3 5.1E-12 1.7E-16 96.7 5.7 50 65-114 1-55 (83)
52 1ign_A Protein (RAP1); RAP1,ye 99.2 3.1E-12 1.1E-16 114.7 4.0 55 60-114 4-64 (246)
53 2aje_A Telomere repeat-binding 99.2 9.9E-12 3.4E-16 99.0 6.3 56 59-114 8-68 (105)
54 2juh_A Telomere binding protei 99.2 7.2E-12 2.5E-16 102.1 3.7 57 57-113 10-71 (121)
55 2cjj_A Radialis; plant develop 99.2 2E-11 6.8E-16 95.3 4.6 50 63-112 7-60 (93)
56 2roh_A RTBP1, telomere binding 99.1 2.8E-11 9.7E-16 98.7 5.0 55 59-113 26-85 (122)
57 2cjj_A Radialis; plant develop 99.1 2.9E-11 9.9E-16 94.3 2.4 48 11-58 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 4.2E-10 1.4E-14 80.9 5.0 48 63-110 11-58 (61)
59 1x58_A Hypothetical protein 49 98.9 4.2E-10 1.4E-14 81.3 3.1 50 9-59 5-57 (62)
60 3hm5_A DNA methyltransferase 1 98.9 1E-09 3.5E-14 85.4 4.0 64 48-115 18-86 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.8 1.6E-09 5.6E-14 77.8 4.0 49 9-58 9-57 (61)
62 2iw5_B Protein corest, REST co 98.8 2.4E-09 8.2E-14 95.3 4.6 49 63-111 132-180 (235)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 4.4E-09 1.5E-13 78.2 4.5 50 61-111 5-58 (72)
64 2xag_B REST corepressor 1; ami 98.7 7.8E-09 2.7E-13 101.1 3.6 47 65-111 381-427 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.6 1.7E-08 5.9E-13 75.0 3.1 49 9-58 5-56 (72)
66 1fex_A TRF2-interacting telome 98.5 2.6E-08 9E-13 71.3 2.4 48 12-59 2-58 (59)
67 1fex_A TRF2-interacting telome 98.5 6.7E-08 2.3E-12 69.1 3.4 47 64-110 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.5 8.9E-08 3E-12 71.4 3.6 48 64-111 8-59 (73)
69 2iw5_B Protein corest, REST co 98.4 9E-08 3.1E-12 85.2 3.7 50 9-59 130-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.4 1.8E-07 6.2E-12 69.7 4.0 47 13-59 9-58 (73)
71 2yqk_A Arginine-glutamic acid 98.2 2.3E-06 7.9E-11 61.7 5.3 49 60-108 5-54 (63)
72 1ofc_X ISWI protein; nuclear p 98.2 3.1E-06 1.1E-10 78.6 7.4 99 13-111 111-275 (304)
73 4eef_G F-HB80.4, designed hema 98.1 1.3E-06 4.5E-11 64.9 2.2 43 64-106 20-66 (74)
74 1ug2_A 2610100B20RIK gene prod 98.0 3.7E-06 1.3E-10 64.8 4.2 49 64-112 33-84 (95)
75 2lr8_A CAsp8-associated protei 97.2 1.3E-06 4.5E-11 63.9 0.0 44 66-110 16-62 (70)
76 4eef_G F-HB80.4, designed hema 97.9 2E-06 6.9E-11 63.9 0.5 44 12-55 20-66 (74)
77 2yqk_A Arginine-glutamic acid 97.9 1.2E-05 4.1E-10 57.9 4.3 49 7-56 4-53 (63)
78 4iej_A DNA methyltransferase 1 97.8 2.6E-05 9E-10 60.5 5.1 51 64-114 30-85 (93)
79 2crg_A Metastasis associated p 97.7 3.5E-05 1.2E-09 56.6 5.0 43 64-106 8-51 (70)
80 4a69_C Nuclear receptor corepr 97.7 3.8E-05 1.3E-09 59.6 4.5 45 64-108 43-87 (94)
81 3hm5_A DNA methyltransferase 1 97.6 3.4E-05 1.2E-09 59.9 3.6 46 12-58 30-80 (93)
82 2xag_B REST corepressor 1; ami 97.6 3.4E-05 1.2E-09 75.5 3.6 48 10-58 378-425 (482)
83 4a69_C Nuclear receptor corepr 97.5 7.3E-05 2.5E-09 58.0 3.7 43 12-55 43-85 (94)
84 2crg_A Metastasis associated p 97.5 8.2E-05 2.8E-09 54.6 3.6 46 10-56 6-52 (70)
85 4b4c_A Chromodomain-helicase-D 97.0 0.00044 1.5E-08 60.0 3.9 101 10-110 5-195 (211)
86 2y9y_A Imitation switch protei 96.9 0.0016 5.4E-08 61.9 7.3 100 13-112 124-292 (374)
87 2ebi_A DNA binding protein GT- 96.8 0.00025 8.5E-09 53.5 0.8 48 11-58 3-63 (86)
88 2lr8_A CAsp8-associated protei 95.8 0.00022 7.6E-09 52.1 0.0 45 14-59 16-62 (70)
89 2ebi_A DNA binding protein GT- 96.7 0.00053 1.8E-08 51.7 2.0 48 64-111 4-65 (86)
90 1ug2_A 2610100B20RIK gene prod 96.5 0.00089 3E-08 51.6 1.9 45 13-57 34-80 (95)
91 4iej_A DNA methyltransferase 1 95.4 0.013 4.6E-07 45.2 3.9 46 12-58 30-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.8 0.041 1.4E-06 39.7 4.9 47 63-109 6-57 (64)
93 1ofc_X ISWI protein; nuclear p 93.1 0.1 3.5E-06 48.3 5.3 50 65-115 111-161 (304)
94 1irz_A ARR10-B; helix-turn-hel 92.3 0.11 3.8E-06 37.4 3.4 49 9-57 4-56 (64)
95 4b4c_A Chromodomain-helicase-D 90.9 0.17 5.9E-06 43.3 3.8 53 63-116 6-63 (211)
96 2xb0_X Chromo domain-containin 89.9 0.23 7.8E-06 45.2 3.9 27 14-40 170-196 (270)
97 2xb0_X Chromo domain-containin 78.1 2.5 8.5E-05 38.3 5.0 47 64-110 3-54 (270)
98 3cz6_A DNA-binding protein RAP 72.9 3.9 0.00013 34.5 4.5 32 7-41 109-148 (168)
99 2o8x_A Probable RNA polymerase 69.1 4.9 0.00017 27.2 3.7 41 70-111 18-58 (70)
100 2y9y_A Imitation switch protei 67.7 6.2 0.00021 37.3 5.1 50 65-115 124-175 (374)
101 1ku3_A Sigma factor SIGA; heli 65.7 6 0.00021 27.5 3.7 43 69-112 12-58 (73)
102 2p7v_B Sigma-70, RNA polymeras 61.3 6.3 0.00022 27.0 3.0 42 70-112 8-53 (68)
103 3hug_A RNA polymerase sigma fa 54.4 12 0.00041 27.2 3.7 41 70-111 40-80 (92)
104 2li6_A SWI/SNF chromatin-remod 52.2 6.2 0.00021 30.8 1.9 38 74-111 53-98 (116)
105 2q1z_A RPOE, ECF SIGE; ECF sig 51.7 18 0.00061 28.8 4.7 35 76-111 144-178 (184)
106 3cz6_A DNA-binding protein RAP 48.5 29 0.00099 29.2 5.4 57 20-76 64-126 (168)
107 2lm1_A Lysine-specific demethy 47.7 14 0.00049 28.1 3.3 38 74-111 48-97 (107)
108 1kkx_A Transcription regulator 45.0 9.4 0.00032 30.3 1.9 39 74-112 52-98 (123)
109 1tty_A Sigma-A, RNA polymerase 45.0 20 0.0007 25.7 3.7 42 70-112 21-66 (87)
110 3ulq_B Transcriptional regulat 43.8 23 0.00078 26.0 3.8 46 64-112 27-72 (90)
111 1x3u_A Transcriptional regulat 43.8 24 0.00081 24.3 3.7 43 67-112 17-59 (79)
112 2jrz_A Histone demethylase jar 43.5 13 0.00046 28.9 2.6 38 74-111 44-93 (117)
113 2jpc_A SSRB; DNA binding prote 42.4 28 0.00095 22.7 3.8 39 72-112 3-41 (61)
114 2eqy_A RBP2 like, jumonji, at 41.6 24 0.00081 27.7 3.8 38 74-111 46-95 (122)
115 2jvw_A Uncharacterized protein 41.4 22 0.00074 26.8 3.2 46 20-77 18-70 (88)
116 2cxy_A BAF250B subunit, HBAF25 41.2 18 0.0006 28.5 3.0 38 74-111 55-104 (125)
117 3c57_A Two component transcrip 40.6 26 0.00088 25.7 3.7 44 66-112 27-70 (95)
118 1je8_A Nitrate/nitrite respons 40.1 25 0.00087 25.0 3.5 44 66-112 21-64 (82)
119 1or7_A Sigma-24, RNA polymeras 40.0 26 0.0009 27.9 3.9 35 76-111 149-183 (194)
120 1fse_A GERE; helix-turn-helix 39.1 28 0.00096 23.4 3.5 45 65-112 10-54 (74)
121 2rq5_A Protein jumonji; develo 38.5 13 0.00046 29.4 1.8 44 34-80 65-113 (121)
122 2rnj_A Response regulator prot 37.5 31 0.0011 24.8 3.6 44 66-112 29-72 (91)
123 2p1m_A SKP1-like protein 1A; F 37.1 21 0.00072 29.1 2.9 36 35-77 118-153 (160)
124 1xsv_A Hypothetical UPF0122 pr 34.6 39 0.0013 25.8 3.9 41 70-111 28-68 (113)
125 3mzy_A RNA polymerase sigma-H 32.3 36 0.0012 26.0 3.4 31 80-111 121-151 (164)
126 2kk0_A AT-rich interactive dom 31.7 30 0.001 28.0 2.9 38 74-111 68-118 (145)
127 2jxj_A Histone demethylase jar 31.1 13 0.00043 27.8 0.5 37 74-110 40-88 (96)
128 1rp3_A RNA polymerase sigma fa 31.0 43 0.0015 27.4 3.9 40 71-111 191-230 (239)
129 1c20_A DEAD ringer protein; DN 30.8 34 0.0012 26.9 3.1 39 73-111 55-106 (128)
130 1tc3_C Protein (TC3 transposas 30.2 66 0.0023 19.1 3.9 38 66-105 5-42 (51)
131 2li6_A SWI/SNF chromatin-remod 28.6 11 0.00037 29.4 -0.3 39 22-60 53-98 (116)
132 1ig6_A MRF-2, modulator recogn 28.6 16 0.00055 27.9 0.7 38 74-111 37-87 (107)
133 3i4p_A Transcriptional regulat 27.6 40 0.0014 27.0 3.0 45 69-114 2-47 (162)
134 1ntc_A Protein (nitrogen regul 26.4 74 0.0025 23.1 4.1 36 69-105 50-85 (91)
135 1s7o_A Hypothetical UPF0122 pr 25.9 65 0.0022 24.6 3.9 43 67-111 23-65 (113)
136 1p4w_A RCSB; solution structur 25.8 74 0.0025 23.7 4.1 46 64-112 32-77 (99)
137 2ast_A S-phase kinase-associat 25.0 30 0.001 27.9 1.9 35 36-77 120-154 (159)
138 1u78_A TC3 transposase, transp 24.5 2.2E+02 0.0074 21.1 7.8 88 13-105 5-100 (141)
139 3v7d_A Suppressor of kinetocho 23.5 31 0.001 28.5 1.6 35 35-76 126-160 (169)
140 3i4p_A Transcriptional regulat 22.3 20 0.00068 28.9 0.2 39 18-57 3-41 (162)
141 3e7l_A Transcriptional regulat 22.2 66 0.0023 21.6 2.9 33 70-103 19-51 (63)
142 2yqf_A Ankyrin-1; death domain 21.0 65 0.0022 24.5 2.9 34 68-102 14-47 (111)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.4e-34 Score=229.65 Aligned_cols=105 Identities=59% Similarity=1.102 Sum_probs=99.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCccc
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWAT 88 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~ 88 (278)
++++|+||+|||++|+++|++||..+|..||..|++|+.+||++||.++|+|.+++++||+|||++|++++.+||++|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHHhhhhh
Q 023744 89 IARLLNGRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 89 IA~~lpgRT~~~~knRw~~~lk~k~ 113 (278)
||++|||||+++|++||+.++++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHcCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999998863
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=2.6e-34 Score=235.99 Aligned_cols=112 Identities=53% Similarity=0.945 Sum_probs=103.4
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR 81 (278)
Q Consensus 2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~ 81 (278)
|.+..+++..+|+||+|||++|+++|++||..+|..||..|++|+.+||++||.++|+|.+++++||+|||++|++++.+
T Consensus 17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744 82 FGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 82 ~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~ 113 (278)
||++|+.||++|||||+++|++||+.++++++
T Consensus 97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999988763
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=4.4e-34 Score=235.81 Aligned_cols=107 Identities=48% Similarity=0.935 Sum_probs=103.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCccccc
Q 023744 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIA 90 (278)
Q Consensus 11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA 90 (278)
+||+||+|||++|+++|.+||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744 91 RLLNGRTDNAIKNHWNSTLKRKCSSML 117 (278)
Q Consensus 91 ~~lpgRT~~~~knRw~~~lk~k~~~~~ 117 (278)
++|+|||+++|++||++++++++....
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999877554
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5.3e-34 Score=227.73 Aligned_cols=103 Identities=35% Similarity=0.705 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCcccccc
Q 023744 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIAR 91 (278)
Q Consensus 12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~ 91 (278)
||+||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHhhhhhh
Q 023744 92 LLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 92 ~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
+|||||+++|++||+.++++...
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHH
Confidence 99999999999999998887644
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=5.1e-33 Score=228.16 Aligned_cols=106 Identities=37% Similarity=0.780 Sum_probs=101.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCCC
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNK 85 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~k 85 (278)
.....+||+||+|||++|+++|++||. +|..||+.|++|+.+||++||.++|+|.+++++||+|||++|++++.+||++
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 356788999999999999999999997 8999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 86 WATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 86 W~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
|..||++|+|||+++|++||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999888775
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=4.2e-32 Score=230.29 Aligned_cols=112 Identities=55% Similarity=1.002 Sum_probs=106.5
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR 81 (278)
Q Consensus 2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~ 81 (278)
|.+..++++.+|+||+|||++|+++|++||..+|..||..|++|+..||++||.++|+|.+++++||+|||++|++++.+
T Consensus 48 w~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 127 (159)
T 1h89_C 48 WQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127 (159)
T ss_dssp HHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence 45678899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744 82 FGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 82 ~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~ 113 (278)
||++|+.||++|||||+++|++||+.++++++
T Consensus 128 ~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 128 LGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp HCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred HCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999988763
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=8e-30 Score=216.22 Aligned_cols=106 Identities=31% Similarity=0.727 Sum_probs=62.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCC-Ccc
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWA 87 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~ 87 (278)
...+++||+|||++|+++|++||..+|..||..|++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 3578999999999999999999988999999999999999999999999999999999999999999999999996 699
Q ss_pred ccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 88 TIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 88 ~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
.||.+|+|||+.+|++||+++|...+.
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 109 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVK 109 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999876544
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.7e-22 Score=147.82 Aligned_cols=66 Identities=29% Similarity=0.581 Sum_probs=63.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHH
Q 023744 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEED 72 (278)
Q Consensus 7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED 72 (278)
.+.+++|+||+|||++|+++|++||..+|..||..|++|+.+||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 567899999999999999999999988999999999999999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.81 E-value=9.3e-21 Score=155.17 Aligned_cols=77 Identities=27% Similarity=0.670 Sum_probs=52.5
Q ss_pred HhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 38 ISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 38 Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
||+.|++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||..+|++||+.+|...+.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 78 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVK 78 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccc
Confidence 78999999999999999999999999999999999999999999996 699999999999999999999998876543
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=5.4e-19 Score=158.39 Aligned_cols=105 Identities=28% Similarity=0.402 Sum_probs=92.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHhhhCCCCCcccccccccccCCCccc-------------------
Q 023744 8 VDRIKGPWSPEEDEALQQLVQKHGPRN-----WSLISKSIPGRSGKSCRLRWCNQLSPQVE------------------- 63 (278)
Q Consensus 8 ~~~~kg~WT~EED~~L~~lV~kyG~~n-----W~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~------------------- 63 (278)
....|++||+|||++|+++|.+||.++ |.+||+.|+|||+.||++||+++|.+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 467789999999999999999998643 99999999999999999999999999986
Q ss_pred ----------cCCCChHHHHHHHHHHHH-c--------------------------------CC----------------
Q 023744 64 ----------HRAFTPEEDEMIIRAHAR-F--------------------------------GN---------------- 84 (278)
Q Consensus 64 ----------k~~WT~EED~~Ll~~v~~-~--------------------------------G~---------------- 84 (278)
+..||.|||-.|+..+.+ | |.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999998876 1 11
Q ss_pred ---------CccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 85 ---------KWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 85 ---------kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
.|..||+.+|+||.+++|+||..+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999988776
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=7.1e-19 Score=143.50 Aligned_cols=83 Identities=22% Similarity=0.337 Sum_probs=78.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccCC-----CccccC-CCChHHHHHH
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQLS-----PQVEHR-AFTPEEDEMI 75 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L~-----p~i~k~-~WT~EED~~L 75 (278)
....+.+++||+|||+.|+++|++||.++|..|++. |++||..+|++||+|+++ |.++++ +|++||+.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467889999999999999999999998889999997 489999999999999997 999999 9999999999
Q ss_pred HHHHHHcCCCccc
Q 023744 76 IRAHARFGNKWAT 88 (278)
Q Consensus 76 l~~v~~~G~kW~~ 88 (278)
+.++..+||+|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=129.12 Aligned_cols=63 Identities=29% Similarity=0.439 Sum_probs=48.3
Q ss_pred cccccccccCCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhh
Q 023744 49 SCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 49 qcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~ 113 (278)
...-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+. |++.|
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence 345689999999999999999999999999999999999999999 9999999999974 54443
No 13
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.71 E-value=6.8e-18 Score=137.88 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=74.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccC-----CCccccCCCChHH-HHHH
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHRAFTPEE-DEMI 75 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L-----~p~i~k~~WT~EE-D~~L 75 (278)
....+.+++||+|||+.|+++|++||.++|..|++. |++|+..+|++||+|++ +|.++++.|+++| +.+|
T Consensus 25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456788999999999999999999999899999986 38999999999999999 8999999999999 8999
Q ss_pred HHHHHHcCCC
Q 023744 76 IRAHARFGNK 85 (278)
Q Consensus 76 l~~v~~~G~k 85 (278)
+.+++.||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999985
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.8e-18 Score=121.11 Aligned_cols=57 Identities=32% Similarity=0.687 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccc
Q 023744 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVE 63 (278)
Q Consensus 7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~ 63 (278)
.+++.+++||+|||++|+++|++||..+|..||+.|++|+..||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578899999999999999999999987899999999999999999999999999875
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.69 E-value=1e-17 Score=116.91 Aligned_cols=52 Identities=58% Similarity=1.136 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (278)
Q Consensus 10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~ 61 (278)
+++|+||+|||++|+++|.+||..+|..||+.|++|+.+||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4689999999999999999999888999999999999999999999999984
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.69 E-value=8.3e-18 Score=124.06 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=60.3
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCCCccccCCCC
Q 023744 4 NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVEHRAFT 68 (278)
Q Consensus 4 ~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp--~Rs~kqcr~Rw~n~L~p~i~k~~WT 68 (278)
+.+.+.+.+++||+|||++|+++|++||..+|..||..|+ +|+..||++||.++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5678889999999999999999999999888999999999 9999999999999999999887764
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=2.1e-17 Score=115.20 Aligned_cols=52 Identities=37% Similarity=0.824 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (278)
Q Consensus 10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~ 61 (278)
+++|+||+|||++|+++|++||..+|..||+.|++|+..||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 3689999999999999999999878999999999999999999999999884
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.1e-17 Score=117.39 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=56.5
Q ss_pred cCCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhccc
Q 023744 57 QLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSML 117 (278)
Q Consensus 57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~~~ 117 (278)
+|+|.+++++||+|||++|++++.+||++|..||+ ++|||++||++||+.+|++.+....
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 68999999999999999999999999999999999 8899999999999999999877543
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.5e-16 Score=118.30 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=55.2
Q ss_pred CCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744 58 LSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (278)
Q Consensus 58 L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~ 115 (278)
.+|.+++++||+|||++|++++.+||++|..||++|+|||+++||+||+.+++++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999998665
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=8.2e-17 Score=117.54 Aligned_cols=54 Identities=33% Similarity=0.505 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCCCccc
Q 023744 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLSPQVE 63 (278)
Q Consensus 10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp--~Rs~kqcr~Rw~n~L~p~i~ 63 (278)
.+|++||+|||++|+++|++||..+|..||+.++ +|+..||++||+|+++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 5688999999999999999999989999999875 99999999999999988764
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2e-16 Score=113.42 Aligned_cols=56 Identities=29% Similarity=0.436 Sum_probs=51.8
Q ss_pred CCccccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4778999999999999999999999 6999999999999999999999999876543
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.6e-16 Score=113.15 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=51.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744 8 VDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (278)
Q Consensus 8 ~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~ 61 (278)
+.+.+++||+|||++|+++|++||..+|..||+.|++|+.+||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 578899999999999999999999888999999999999999999999999764
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.59 E-value=7.8e-16 Score=107.20 Aligned_cols=50 Identities=30% Similarity=0.540 Sum_probs=46.1
Q ss_pred cccCCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhh
Q 023744 62 VEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 62 i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998 899999999999999999999999864
No 24
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-16 Score=115.70 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=55.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCC
Q 023744 5 RREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRA 66 (278)
Q Consensus 5 ~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~ 66 (278)
+.+|++.+++||+|||++|+++|+.||. +|..||+ +++|+.+||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 5789999999999999999999999996 7999999 8899999999999999998877653
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=5.9e-16 Score=108.48 Aligned_cols=49 Identities=31% Similarity=0.435 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC--CCCcccccccccccCC
Q 023744 11 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP--GRSGKSCRLRWCNQLS 59 (278)
Q Consensus 11 ~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp--~Rs~kqcr~Rw~n~L~ 59 (278)
++|+||+|||++|+++|++||..+|..||..|+ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999999889999999999 9999999999999874
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.56 E-value=1.6e-15 Score=105.69 Aligned_cols=50 Identities=28% Similarity=0.670 Sum_probs=46.6
Q ss_pred cccCCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhh
Q 023744 62 VEHRAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 62 i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|+.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999988753
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=1.8e-15 Score=105.98 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=46.5
Q ss_pred ccCCCChHHHHHHHHHHHHcC-CCccccccccC--CCCHHHHHHHHHHHhhhh
Q 023744 63 EHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 63 ~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp--gRT~~~~knRw~~~lk~k 112 (278)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 478999999999999999999 69999999999 999999999999998754
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=2.1e-15 Score=108.31 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=49.4
Q ss_pred CCccccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7999999999999999999999988854
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.56 E-value=2.8e-15 Score=110.43 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=54.5
Q ss_pred cCCCccccCCCChHHHHHHHHHHHHcC-CCccccccccC--CCCHHHHHHHHHHHhhhhhhcc
Q 023744 57 QLSPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKCSSM 116 (278)
Q Consensus 57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp--gRT~~~~knRw~~~lk~k~~~~ 116 (278)
..++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|+..+...
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 345677899999999999999999999 69999999999 9999999999999999886543
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=1.8e-15 Score=108.12 Aligned_cols=52 Identities=19% Similarity=0.424 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccccccccC
Q 023744 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQL 58 (278)
Q Consensus 7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-~Rs~kqcr~Rw~n~L 58 (278)
...+.+++||+|||++|+++|++||..+|..||++|+ +|+.+||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999889999999999 999999999998875
No 31
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=111.15 Aligned_cols=57 Identities=25% Similarity=0.478 Sum_probs=52.8
Q ss_pred CCccccCCCChHHHHHHHHHHHHcC-CCccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~ 115 (278)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||..||++||+++|+..+..
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~ 61 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence 4678999999999999999999999 79999999999999999999999999876654
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-15 Score=113.57 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=55.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHhhhCCCCCcccccccccccCCCccccCCC
Q 023744 7 EVDRIKGPWSPEEDEALQQLVQKHGP-----RNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 67 (278)
Q Consensus 7 ~~~~~kg~WT~EED~~L~~lV~kyG~-----~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~W 67 (278)
.++..+++||+|||++|+++|++||. .+|..||.+|++|+..||++||.++|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999996 68999999999999999999999999887776543
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.8e-15 Score=110.25 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=52.1
Q ss_pred CCccccCCCChHHHHHHHHHHHHcC------CCccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFG------NKWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G------~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
+|.+.+++||+|||++|++++.+|| ++|..||.+|+|||..||++||+++|++...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7899999999999999999999999987654
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.51 E-value=1e-14 Score=106.42 Aligned_cols=52 Identities=25% Similarity=0.508 Sum_probs=46.9
Q ss_pred cccCCCChHHHHHHHHHHHHcC-CCccccccccC--CCCHHHHHHHHHHHhhhhh
Q 023744 62 VEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN--GRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 62 i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp--gRT~~~~knRw~~~lk~k~ 113 (278)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||++++|..+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 58999999865 9999999999999988754
No 35
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.50 E-value=8.6e-15 Score=109.57 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=47.0
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCc
Q 023744 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 61 (278)
Q Consensus 2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~ 61 (278)
+.+..+|++.+|+||+|||++|+++|++||.+ |..||+.| +|+..+|++||.. |...
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~ 69 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDT 69 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCC
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHH
Confidence 56889999999999999999999999999966 99999999 9999999999964 4433
No 36
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=4.5e-15 Score=110.25 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=53.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcccc
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEH 64 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k 64 (278)
..+++.+++||+|||++|+++|++||. +|..||++|++|+..||+.||.++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999996 7999999999999999999999998776655
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-15 Score=116.61 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=54.0
Q ss_pred cCCCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 57 QLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
.+.|.+++++||+|||++|++++.+||++|..||.+|+|||+++|++||+.++++...
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 4678899999999999999999999999999999999999999999999999987543
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.48 E-value=3.5e-14 Score=108.72 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhh----CCCCCcccccccccccC-----CCccccC-CCChHHHHHHHHHHHH
Q 023744 13 GPWSPEEDEALQQLVQKHGPRNWSLISKS----IPGRSGKSCRLRWCNQL-----SPQVEHR-AFTPEEDEMIIRAHAR 81 (278)
Q Consensus 13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~----lp~Rs~kqcr~Rw~n~L-----~p~i~k~-~WT~EED~~Ll~~v~~ 81 (278)
++||+|||++|+++|++||.++|..|++. |++||..+|++||+|++ +|.++++ +..++....++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999995 89999999999999987 6876665 7777888899999875
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.48 E-value=1.1e-14 Score=119.64 Aligned_cols=87 Identities=30% Similarity=0.518 Sum_probs=64.8
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHHHHHH
Q 023744 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHAR 81 (278)
Q Consensus 2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~ 81 (278)
|.++.++++.+|+||+|||++|+++|.+||. +|..||+.|++|+..+|+.||+++|++.+..++|+.+- +.....
T Consensus 44 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~ 118 (131)
T 3zqc_A 44 WFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRS 118 (131)
T ss_dssp HHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC
T ss_pred HhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhh
Confidence 4567899999999999999999999999995 59999999999999999999999999999999988763 111122
Q ss_pred cCCCcccccccc
Q 023744 82 FGNKWATIARLL 93 (278)
Q Consensus 82 ~G~kW~~IA~~l 93 (278)
.+.+|+.|++.|
T Consensus 119 kk~~~~~i~k~~ 130 (131)
T 3zqc_A 119 KKRKAADVPKKL 130 (131)
T ss_dssp ------------
T ss_pred hhhhhhhcchhc
Confidence 345688887765
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.48 E-value=2.7e-14 Score=102.00 Aligned_cols=49 Identities=24% Similarity=0.477 Sum_probs=45.8
Q ss_pred ccccCCCChHHHHHHHHHHHHcC-CCccccccccC-CCCHHHHHHHHHHHh
Q 023744 61 QVEHRAFTPEEDEMIIRAHARFG-NKWATIARLLN-GRTDNAIKNHWNSTL 109 (278)
Q Consensus 61 ~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~~lp-gRT~~~~knRw~~~l 109 (278)
.+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999 89999999999 999999999998775
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.46 E-value=3.2e-14 Score=113.35 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=69.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhC----CCCCcccccccccccC-----CCccccCCCChHHHHH-H
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSI----PGRSGKSCRLRWCNQL-----SPQVEHRAFTPEEDEM-I 75 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l----p~Rs~kqcr~Rw~n~L-----~p~i~k~~WT~EED~~-L 75 (278)
....+.+++||+|||++|+++|++||.++|..|++.+ ++||..+|++||+|++ +|.++++.-+++|--. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 4567889999999999999999999998999999965 8999999999999988 7999999888888775 8
Q ss_pred HHHHHHcCC
Q 023744 76 IRAHARFGN 84 (278)
Q Consensus 76 l~~v~~~G~ 84 (278)
+++++.+|+
T Consensus 87 ~~~~~~~~~ 95 (105)
T 2aje_A 87 LNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899888774
No 42
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=103.23 Aligned_cols=52 Identities=15% Similarity=0.342 Sum_probs=48.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L 58 (278)
+.....+++||+|||++|+++|++|| .+|..||++|++|+..||++||.++.
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSC
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45667789999999999999999999 78999999999999999999999984
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=3e-13 Score=101.12 Aligned_cols=52 Identities=12% Similarity=0.307 Sum_probs=47.5
Q ss_pred CccccCCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 60 PQVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 60 p~i~k~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+.+.+++||.|||.+|++++.+|| ++|.+||++|||||.++|++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456789999999999999999999 6899999999999999999999887653
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.35 E-value=2.9e-13 Score=106.70 Aligned_cols=58 Identities=26% Similarity=0.532 Sum_probs=52.7
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 023744 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (278)
Q Consensus 2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p 60 (278)
|.+..++++.+|+||+|||++|+++|++||. +|..||+.||+|+..+|+.||..+++.
T Consensus 46 w~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 46 WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred HHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4467889999999999999999999999995 699999999999999999999988764
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=5.3e-13 Score=101.17 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=44.4
Q ss_pred ccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHH
Q 023744 61 QVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST 108 (278)
Q Consensus 61 ~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~ 108 (278)
...+++||+|||++|++++.+||++|.+||++|++||..||++||+.+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999643
No 46
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=2.2e-13 Score=108.15 Aligned_cols=58 Identities=36% Similarity=0.511 Sum_probs=52.9
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCC
Q 023744 2 AFNRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (278)
Q Consensus 2 ~~~~~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p 60 (278)
|.+..++++.+|+||+|||++|+++|.+||. +|..||+.||+|+..+|+.||..+++.
T Consensus 43 w~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 43 WNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999996 699999999999999999999887654
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=4.4e-13 Score=100.25 Aligned_cols=54 Identities=20% Similarity=0.497 Sum_probs=48.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccCC
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~ 59 (278)
..+...+++||+|||++|+.+|++|| +.+|..||++||||+.+||++||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45677889999999999999999999 3569999999999999999999987653
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.31 E-value=1.3e-12 Score=106.63 Aligned_cols=57 Identities=33% Similarity=0.591 Sum_probs=51.8
Q ss_pred CCccccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~ 115 (278)
.+..++++||+|||++|+++|.+||.+|..||..|+||+..||++||+++|...+..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~ 62 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISH 62 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccc
Confidence 456789999999999999999999999999999999999999999999999776543
No 49
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.97 E-value=2.1e-13 Score=105.44 Aligned_cols=53 Identities=21% Similarity=0.382 Sum_probs=49.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 023744 6 REVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 6 ~~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~ 59 (278)
..+.+.+|+||+|||++|+++|.+||. +|..||..|++||..||++||.++|.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 467889999999999999999999996 69999999999999999999999885
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=2.9e-12 Score=92.66 Aligned_cols=51 Identities=20% Similarity=0.433 Sum_probs=46.8
Q ss_pred cccCCCChHHHHHHHHHHHHcCCCccccc---cccCCCCHHHHHHHHHHHhhhh
Q 023744 62 VEHRAFTPEEDEMIIRAHARFGNKWATIA---RLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 62 i~k~~WT~EED~~Ll~~v~~~G~kW~~IA---~~lpgRT~~~~knRw~~~lk~k 112 (278)
.++.+||+|||+.|++.|.+||.+|+.|+ .++++||..+||+||+.+.|+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5789999999999998887754
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.26 E-value=5.1e-12 Score=96.68 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=45.8
Q ss_pred CCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhhh
Q 023744 65 RAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 65 ~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~~ 114 (278)
++||+|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 47999999999999999997 99999985 8999999999999999986643
No 52
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.24 E-value=3.1e-12 Score=114.68 Aligned_cols=55 Identities=24% Similarity=0.458 Sum_probs=49.0
Q ss_pred CccccCCCChHHHHHHHHHHHHcCCC------ccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 60 PQVEHRAFTPEEDEMIIRAHARFGNK------WATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 60 p~i~k~~WT~EED~~Ll~~v~~~G~k------W~~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
+.+++++||+|||++|+++|.+||++ |..||++|||||+++||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35688999999999999999999985 99999999999999999999999999876
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=9.9e-12 Score=98.97 Aligned_cols=56 Identities=20% Similarity=0.421 Sum_probs=49.4
Q ss_pred CCccccCCCChHHHHHHHHHHHHcCC-Ccccccccc----CCCCHHHHHHHHHHHhhhhhh
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARLL----NGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~l----pgRT~~~~knRw~~~lk~k~~ 114 (278)
....++++||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++....
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 34568899999999999999999997 999999865 899999999999999986543
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.19 E-value=7.2e-12 Score=102.09 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=51.1
Q ss_pred cCCCccccCCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhh
Q 023744 57 QLSPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 57 ~L~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~ 113 (278)
-+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++...
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 3566778999999999999999999997 99999987 489999999999999998543
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.16 E-value=2e-11 Score=95.27 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=45.4
Q ss_pred ccCCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 63 EHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 63 ~k~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
.+++||.|||.+|++++++|| ++|.+||+.|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999887664
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.14 E-value=2.8e-11 Score=98.69 Aligned_cols=55 Identities=22% Similarity=0.466 Sum_probs=48.8
Q ss_pred CCccccCCCChHHHHHHHHHHHHcCC-Cccccccc----cCCCCHHHHHHHHHHHhhhhh
Q 023744 59 SPQVEHRAFTPEEDEMIIRAHARFGN-KWATIARL----LNGRTDNAIKNHWNSTLKRKC 113 (278)
Q Consensus 59 ~p~i~k~~WT~EED~~Ll~~v~~~G~-kW~~IA~~----lpgRT~~~~knRw~~~lk~k~ 113 (278)
....++++||.|||+.|+++|.+||. +|+.|++. |+|||..+||+||+++++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34457899999999999999999997 99999986 389999999999999997653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.08 E-value=2.9e-11 Score=94.32 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccC
Q 023744 11 IKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQL 58 (278)
Q Consensus 11 ~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L 58 (278)
.+++||+|||++|++++.+|+ +..|..||+.|||||.++|++||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467999999999999999997 456999999999999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.2e-10 Score=80.93 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhh
Q 023744 63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLK 110 (278)
Q Consensus 63 ~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk 110 (278)
...+||+||++++++++.+||.+|..||.+||+||..+|..+|+...|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.93 E-value=4.2e-10 Score=81.33 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHh---hhCCCCCcccccccccccCC
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLIS---KSIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia---~~lp~Rs~kqcr~Rw~n~L~ 59 (278)
.+.+++||+|||+.|++.|++||. +|..|+ .++++|+...+.+||++..+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 357889999999999999999996 899999 57799999999999988754
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.88 E-value=1e-09 Score=85.44 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=56.9
Q ss_pred ccccccccccCCCccccCCCChHHHHHHHHHHHHcCCCcccccccc-----CCCCHHHHHHHHHHHhhhhhhc
Q 023744 48 KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLL-----NGRTDNAIKNHWNSTLKRKCSS 115 (278)
Q Consensus 48 kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~l-----pgRT~~~~knRw~~~lk~k~~~ 115 (278)
.=+.++|.++|.+ .+||.||+..|++++.+||.+|..|+.++ ++||..++|+||+.+.++.+..
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567899999965 89999999999999999999999999998 5899999999999888776543
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=77.79 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=44.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L 58 (278)
....++||+||++++.+++.+|| ++|..||.+|++|+..+|.++|....
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45668999999999999999999 67999999999999999999996543
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.81 E-value=2.4e-09 Score=95.31 Aligned_cols=49 Identities=18% Similarity=0.400 Sum_probs=45.8
Q ss_pred ccCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 63 EHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 63 ~k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
...+||+||+.++++++.+||++|..||+.|++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999877765
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=4.4e-09 Score=78.24 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=44.5
Q ss_pred ccccCCCChHHHHHHHHHHHHcC----CCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 61 QVEHRAFTPEEDEMIIRAHARFG----NKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 61 ~i~k~~WT~EED~~Ll~~v~~~G----~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
..+.+.||.|||.+|.+++++|+ ++|.+||.++ |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34568999999999999999997 5699999998 99999999999877654
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.67 E-value=7.8e-09 Score=101.12 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=42.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 65 ~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
..||.||..++++++.+||.+|..||+.+.+||..||+++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999754443
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.61 E-value=1.7e-08 Score=75.03 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCChHHHhhhCCCCCcccccccccccC
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHG---PRNWSLISKSIPGRSGKSCRLRWCNQL 58 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG---~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L 58 (278)
....+.||.|||++|.+++.+|+ +..|..||..+ +|+..+|+.||+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 44567899999999999999997 35699999998 999999999997654
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.54 E-value=2.6e-08 Score=71.26 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChHHHhh-hCCCCCcccccccccccCC
Q 023744 12 KGPWSPEEDEALQQLVQKH--------GPRNWSLISK-SIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 12 kg~WT~EED~~L~~lV~ky--------G~~nW~~Ia~-~lp~Rs~kqcr~Rw~n~L~ 59 (278)
|.+||+|||++|.++|.+| |..-|..+++ .+++++-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 8999999999999998874
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.49 E-value=6.7e-08 Score=69.13 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=42.5
Q ss_pred cCCCChHHHHHHHHHHHHc--------CCC-cccccc-ccCCCCHHHHHHHHHHHhh
Q 023744 64 HRAFTPEEDEMIIRAHARF--------GNK-WATIAR-LLNGRTDNAIKNHWNSTLK 110 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~--------G~k-W~~IA~-~lpgRT~~~~knRw~~~lk 110 (278)
+.+||.|||..|++.|++| |++ |..+++ .++++|..++|+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 554 999999 8999999999999988764
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.46 E-value=8.9e-08 Score=71.38 Aligned_cols=48 Identities=13% Similarity=0.278 Sum_probs=42.9
Q ss_pred cCCCChHHHHHHHHHHHHcCC----CccccccccCCCCHHHHHHHHHHHhhh
Q 023744 64 HRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~----kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
...||.+|+.+|.++++.|+. +|.+||..++|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 599999999999999999999766443
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.44 E-value=9e-08 Score=85.21 Aligned_cols=50 Identities=24% Similarity=0.346 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~ 59 (278)
.....+||+||++++++++.+|| ++|..||+.|++||..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35677999999999999999999 689999999999999999999987763
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=1.8e-07 Score=69.71 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCcccccccccccCC
Q 023744 13 GPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 13 g~WT~EED~~L~~lV~kyG~---~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~ 59 (278)
..||.+|+++|..++..|+. .+|..||..|++|+..+|+.||...+.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 57999999999999999974 469999999999999999999987764
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2.3e-06 Score=61.71 Aligned_cols=49 Identities=12% Similarity=0.290 Sum_probs=44.5
Q ss_pred CccccCCCChHHHHHHHHHHHHcCCCcccccc-ccCCCCHHHHHHHHHHH
Q 023744 60 PQVEHRAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWNST 108 (278)
Q Consensus 60 p~i~k~~WT~EED~~Ll~~v~~~G~kW~~IA~-~lpgRT~~~~knRw~~~ 108 (278)
|.+....||+||..+..+++.+||.+|..|++ .|++||..+|...|+..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 56677899999999999999999999999998 69999999999988643
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.16 E-value=3.1e-06 Score=78.56 Aligned_cols=99 Identities=14% Similarity=0.266 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccc-------cccccC---------------------------
Q 023744 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRL-------RWCNQL--------------------------- 58 (278)
Q Consensus 13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~-------Rw~n~L--------------------------- 58 (278)
+.||..|...++.++.+||..+|..||..|++++...++. ||..+-
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999989999999999999876643 221100
Q ss_pred ----------------CCccccCCCChHHHHHHHHHHHHcCC----Ccccccc------------ccCCCCHHHHHHHHH
Q 023744 59 ----------------SPQVEHRAFTPEEDEMIIRAHARFGN----KWATIAR------------LLNGRTDNAIKNHWN 106 (278)
Q Consensus 59 ----------------~p~i~k~~WT~EED~~Ll~~v~~~G~----kW~~IA~------------~lpgRT~~~~knRw~ 106 (278)
.+..+...||+|||..||-++.+||- .|..|.. ++..||+.+|..|-+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 12224568999999999999999996 4999962 456899999999998
Q ss_pred HHhhh
Q 023744 107 STLKR 111 (278)
Q Consensus 107 ~~lk~ 111 (278)
.+++-
T Consensus 271 tLi~~ 275 (304)
T 1ofc_X 271 TLITL 275 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88854
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.06 E-value=1.3e-06 Score=64.91 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=38.7
Q ss_pred cCCCChHHHHHHHHHHHHcCC----CccccccccCCCCHHHHHHHHH
Q 023744 64 HRAFTPEEDEMIIRAHARFGN----KWATIARLLNGRTDNAIKNHWN 106 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~----kW~~IA~~lpgRT~~~~knRw~ 106 (278)
...||.||+.+|..+++.|.. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 6999999999999999999984
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.03 E-value=3.7e-06 Score=64.83 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=43.9
Q ss_pred cCCCChHHHHHHHHHHHHcCC---CccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 64 HRAFTPEEDEMIIRAHARFGN---KWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~---kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
---||.|||..||....+-|. .|+.||..|.+|+.++|++||+.+++-.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 347999999999999999997 6999999999999999999998877543
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.16 E-value=1.3e-06 Score=63.90 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHHHcCC---CccccccccCCCCHHHHHHHHHHHhh
Q 023744 66 AFTPEEDEMIIRAHARFGN---KWATIARLLNGRTDNAIKNHWNSTLK 110 (278)
Q Consensus 66 ~WT~EED~~Ll~~v~~~G~---kW~~IA~~lpgRT~~~~knRw~~~lk 110 (278)
.||.|||..||..+.+-|. .|+.||..| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999997 699999999 9999999999987664
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.89 E-value=2e-06 Score=63.91 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChHHHhhhCCCCCccccccccc
Q 023744 12 KGPWSPEEDEALQQLVQKHGP---RNWSLISKSIPGRSGKSCRLRWC 55 (278)
Q Consensus 12 kg~WT~EED~~L~~lV~kyG~---~nW~~Ia~~lp~Rs~kqcr~Rw~ 55 (278)
...||.||+++|..++.+|.. ..|.+||..||||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 347999999999999999964 25999999999999999999994
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=1.2e-05 Score=57.90 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCcccccccccc
Q 023744 7 EVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCN 56 (278)
Q Consensus 7 ~~~~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~-~lp~Rs~kqcr~Rw~n 56 (278)
.|......||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4566778999999999999999999 58999999 5899999999877643
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.78 E-value=2.6e-05 Score=60.46 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=45.9
Q ss_pred cCCCChHHHHHHHHHHHHcCCCccccccccC-----CCCHHHHHHHHHHHhhhhhh
Q 023744 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLN-----GRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lp-----gRT~~~~knRw~~~lk~k~~ 114 (278)
...||.||...|++++.+|+-+|..|+..+. .||..++|+||+.+.++.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999998763 79999999999998877654
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.73 E-value=3.5e-05 Score=56.62 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=40.6
Q ss_pred cCCCChHHHHHHHHHHHHcCCCcccccc-ccCCCCHHHHHHHHH
Q 023744 64 HRAFTPEEDEMIIRAHARFGNKWATIAR-LLNGRTDNAIKNHWN 106 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~-~lpgRT~~~~knRw~ 106 (278)
...||+||..+..+++.+||.+|..|++ .|++||..+|...|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4689999999999999999999999999 699999999999987
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.66 E-value=3.8e-05 Score=59.57 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=41.9
Q ss_pred cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHH
Q 023744 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST 108 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~ 108 (278)
...||+||.++..++...||.+|..|+..|++||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988644
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.62 E-value=3.4e-05 Score=59.90 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhC-----CCCCcccccccccccC
Q 023744 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSI-----PGRSGKSCRLRWCNQL 58 (278)
Q Consensus 12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~l-----p~Rs~kqcr~Rw~n~L 58 (278)
..+||.||++.|.+|+++|+.+ |..|+..+ ++|+...+++||..+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999976 99999999 5899999999997643
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.56 E-value=3.4e-05 Score=75.52 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccC
Q 023744 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQL 58 (278)
Q Consensus 10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L 58 (278)
+...+||.||.+++++++.+|| ++|..||+.|..|+..||+.+|.++.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567999999999999999999 68999999999999999999986643
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.47 E-value=7.3e-05 Score=57.98 Aligned_cols=43 Identities=23% Similarity=0.503 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccc
Q 023744 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWC 55 (278)
Q Consensus 12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~ 55 (278)
...||+||.+++.+....|| ++|..|+..|++|+..+|-+.|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence 46799999999999999999 67999999999999999987764
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.45 E-value=8.2e-05 Score=54.64 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHhh-hCCCCCcccccccccc
Q 023744 10 RIKGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCN 56 (278)
Q Consensus 10 ~~kg~WT~EED~~L~~lV~kyG~~nW~~Ia~-~lp~Rs~kqcr~Rw~n 56 (278)
.....||+||-+++.+.+.+|| +||..|++ .|++|+..+|...|..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3455899999999999999999 57999999 5999999999877643
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.00 E-value=0.00044 Score=59.96 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=67.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCChHHHhhh--CCCCCcccccccccc-----------------------------
Q 023744 10 RIKGPWSPEEDEALQQLVQKHG--PRNWSLISKS--IPGRSGKSCRLRWCN----------------------------- 56 (278)
Q Consensus 10 ~~kg~WT~EED~~L~~lV~kyG--~~nW~~Ia~~--lp~Rs~kqcr~Rw~n----------------------------- 56 (278)
.....||..|-..|+.++.+|| ...|..|+.. +.+++...+..-+..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGP 84 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccch
Confidence 3456799999999999999999 4569999864 567666432220000
Q ss_pred -------------------------------------cCC-----CccccCCCChHHHHHHHHHHHHcC-CCcccccc--
Q 023744 57 -------------------------------------QLS-----PQVEHRAFTPEEDEMIIRAHARFG-NKWATIAR-- 91 (278)
Q Consensus 57 -------------------------------------~L~-----p~i~k~~WT~EED~~Ll~~v~~~G-~kW~~IA~-- 91 (278)
+.- +..-...||.+||..||..+.+|| ++|..|..
T Consensus 85 ~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 85 TFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp EEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred hhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 000 011123599999999999999999 78988864
Q ss_pred cc--C----------CCCHHHHHHHHHHHhh
Q 023744 92 LL--N----------GRTDNAIKNHWNSTLK 110 (278)
Q Consensus 92 ~l--p----------gRT~~~~knRw~~~lk 110 (278)
.| . .++...+..|-..+|+
T Consensus 165 ~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 165 DLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred hcCccccccccccccCCChHHHHHHHHHHHH
Confidence 21 1 2456778888766655
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.92 E-value=0.0016 Score=61.92 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-CCCcccccc-------ccccc------C--------------------
Q 023744 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRL-------RWCNQ------L-------------------- 58 (278)
Q Consensus 13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-~Rs~kqcr~-------Rw~n~------L-------------------- 58 (278)
+.||.-|=..++.++.+||..+-..||..|. +++...++. ||..+ +
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999888999999997 888765542 22111 0
Q ss_pred ------------------CCc-cccCCCChHHHHHHHHHHHHcCC----Ccccccc------------ccCCCCHHHHHH
Q 023744 59 ------------------SPQ-VEHRAFTPEEDEMIIRAHARFGN----KWATIAR------------LLNGRTDNAIKN 103 (278)
Q Consensus 59 ------------------~p~-i~k~~WT~EED~~Ll~~v~~~G~----kW~~IA~------------~lpgRT~~~~kn 103 (278)
.+. .+...||++||..||-++.+||- .|..|-. +|..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 011 13457999999999999999994 4998833 246799999999
Q ss_pred HHHHHhhhh
Q 023744 104 HWNSTLKRK 112 (278)
Q Consensus 104 Rw~~~lk~k 112 (278)
|-+.+++-.
T Consensus 284 Rc~tLi~~I 292 (374)
T 2y9y_A 284 RGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888543
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.83 E-value=0.00025 Score=53.52 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------CC---ChHHHhhhC----CCCCcccccccccccC
Q 023744 11 IKGPWSPEEDEALQQLVQKHG------PR---NWSLISKSI----PGRSGKSCRLRWCNQL 58 (278)
Q Consensus 11 ~kg~WT~EED~~L~~lV~kyG------~~---nW~~Ia~~l----p~Rs~kqcr~Rw~n~L 58 (278)
+...||.+|-.+|+++...+. .. -|..||..| -.|++.||+.+|.|+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456899999999999997631 11 399999987 3899999999998864
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.79 E-value=0.00022 Score=52.13 Aligned_cols=45 Identities=16% Similarity=0.454 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCcccccccccccCC
Q 023744 14 PWSPEEDEALQQLVQKHGP--RNWSLISKSIPGRSGKSCRLRWCNQLS 59 (278)
Q Consensus 14 ~WT~EED~~L~~lV~kyG~--~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~ 59 (278)
.||.|||..|+..+++.|+ ..|..||+.+ +|+..|+.+||...++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999986 2499999999 9999999999977653
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.73 E-value=0.00053 Score=51.65 Aligned_cols=48 Identities=17% Similarity=0.428 Sum_probs=39.1
Q ss_pred cCCCChHHHHHHHHHHHHcCC----------CccccccccC----CCCHHHHHHHHHHHhhh
Q 023744 64 HRAFTPEEDEMIIRAHARFGN----------KWATIARLLN----GRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~----------kW~~IA~~lp----gRT~~~~knRw~~~lk~ 111 (278)
...||.+|..+||.+...+.. .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999875321 4999998763 69999999999776665
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.51 E-value=0.00089 Score=51.59 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChHHHhhhCCCCCccccccccccc
Q 023744 13 GPWSPEEDEALQQLVQKHGP--RNWSLISKSIPGRSGKSCRLRWCNQ 57 (278)
Q Consensus 13 g~WT~EED~~L~~lV~kyG~--~nW~~Ia~~lp~Rs~kqcr~Rw~n~ 57 (278)
--||.|||..|+...++.|. ..|..||+.|.+|+..|+.+||+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 35999999999999999986 3599999999999999999999653
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.37 E-value=0.013 Score=45.21 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChHHHhhhCC-----CCCcccccccccccC
Q 023744 12 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-----GRSGKSCRLRWCNQL 58 (278)
Q Consensus 12 kg~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp-----~Rs~kqcr~Rw~n~L 58 (278)
-..||.||...|.+|+++|..+ |..|+.... .|+..++++||....
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999966 999998873 789999999997653
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.83 E-value=0.041 Score=39.69 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=40.0
Q ss_pred ccCCCChHHHHHHHHHHHHcCCC---cccccccc--CCCCHHHHHHHHHHHh
Q 023744 63 EHRAFTPEEDEMIIRAHARFGNK---WATIARLL--NGRTDNAIKNHWNSTL 109 (278)
Q Consensus 63 ~k~~WT~EED~~Ll~~v~~~G~k---W~~IA~~l--pgRT~~~~knRw~~~l 109 (278)
.+-.||+|..+..++++.++|.. ++.|.+.| +|.|..+|+.|.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999965 67888765 6899999999987654
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.12 E-value=0.1 Score=48.27 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhhhhhc
Q 023744 65 RAFTPEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCSS 115 (278)
Q Consensus 65 ~~WT~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~k~~~ 115 (278)
+.||..|...++.++.+||. +|..||..|+|+|...|+.++ ..|=.++..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~-~vFw~ry~e 161 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN-AVFWERCTE 161 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH-HHHHHHGGG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH-HHHHHhHHH
Confidence 57999999999999999996 699999999999999997665 444455543
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.26 E-value=0.11 Score=37.35 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHhhhC--CCCCccccccccccc
Q 023744 9 DRIKGPWSPEEDEALQQLVQKHGPRN--WSLISKSI--PGRSGKSCRLRWCNQ 57 (278)
Q Consensus 9 ~~~kg~WT~EED~~L~~lV~kyG~~n--W~~Ia~~l--p~Rs~kqcr~Rw~n~ 57 (278)
+..+-.||+|..+.+.++|.+.|... +..|.+.| ++.|..++.-|.++|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45566899999999999999999432 78998876 577888887666543
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.85 E-value=0.17 Score=43.34 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=41.8
Q ss_pred ccCCCChHHHHHHHHHHHHcC---CCcccccc--ccCCCCHHHHHHHHHHHhhhhhhcc
Q 023744 63 EHRAFTPEEDEMIIRAHARFG---NKWATIAR--LLNGRTDNAIKNHWNSTLKRKCSSM 116 (278)
Q Consensus 63 ~k~~WT~EED~~Ll~~v~~~G---~kW~~IA~--~lpgRT~~~~knRw~~~lk~k~~~~ 116 (278)
....||+.|-..|++++.+|| .+|..|+. .|.+|+...++..+. .|...|...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~-~f~~~c~~~ 63 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGE-LVHNGCIKA 63 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHH-HHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHH-HHHHHHHHH
Confidence 457899999999999999999 47999985 488999999998664 454555443
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.93 E-value=0.23 Score=45.18 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChHHHhh
Q 023744 14 PWSPEEDEALQQLVQKHGPRNWSLISK 40 (278)
Q Consensus 14 ~WT~EED~~L~~lV~kyG~~nW~~Ia~ 40 (278)
.|+.+||..|+..|.+||.++|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999999999975
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.07 E-value=2.5 Score=38.29 Aligned_cols=47 Identities=11% Similarity=0.178 Sum_probs=40.9
Q ss_pred cCCCChHHHHHHHHHHHHcC---CCcccccc--ccCCCCHHHHHHHHHHHhh
Q 023744 64 HRAFTPEEDEMIIRAHARFG---NKWATIAR--LLNGRTDNAIKNHWNSTLK 110 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G---~kW~~IA~--~lpgRT~~~~knRw~~~lk 110 (278)
++.||+.|-..|++++.+|| .+|..|+. .|+.++...++.-|+.++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 47999974 6889999999988876664
No 98
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=72.92 E-value=3.9 Score=34.50 Aligned_cols=32 Identities=31% Similarity=0.633 Sum_probs=24.9
Q ss_pred CCCCCCCCCCHHHHHHHH--------HHHHHhCCCChHHHhhh
Q 023744 7 EVDRIKGPWSPEEDEALQ--------QLVQKHGPRNWSLISKS 41 (278)
Q Consensus 7 ~~~~~kg~WT~EED~~L~--------~lV~kyG~~nW~~Ia~~ 41 (278)
-|...+|-||+|+|+.|. +++++|| |..|..+
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~R 148 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEMR 148 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence 467899999999999875 6788887 6666543
No 99
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=69.08 E-value=4.9 Score=27.19 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 70 EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+.+..++.++...|..+.+||+.+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 555667777778899999999999 89999999988665544
No 100
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=67.70 E-value=6.2 Score=37.35 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=41.7
Q ss_pred CCCChHHHHHHHHHHHHcCCC-ccccccccC-CCCHHHHHHHHHHHhhhhhhc
Q 023744 65 RAFTPEEDEMIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNSTLKRKCSS 115 (278)
Q Consensus 65 ~~WT~EED~~Ll~~v~~~G~k-W~~IA~~lp-gRT~~~~knRw~~~lk~k~~~ 115 (278)
+.||.-|=..++.+..+||.+ -..||..|. |+|...|+ +|...|=.++..
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~E 175 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIER 175 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhh
Confidence 579999999999999999964 899999997 99999999 566666666654
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.71 E-value=6 Score=27.51 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHH----cCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 69 PEEDEMIIRAHAR----FGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 69 ~EED~~Ll~~v~~----~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
++.+..++.+..- .|..|.+||+.+ |-+...|+.+....+++-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3445566666654 677899999999 999999999887666554
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=61.28 E-value=6.3 Score=27.00 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHHHHH----HcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 70 EEDEMIIRAHA----RFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 70 EED~~Ll~~v~----~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
+.+..++.+.. ..|..+.+||+.+ |-+...|+.+....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44555665554 3577899999999 999999999987776554
No 103
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.38 E-value=12 Score=27.17 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 70 EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+.+..++.++...|..-.+||+.| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455667777777888999999999 99999999988766554
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=52.17 E-value=6.2 Score=30.83 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=29.8
Q ss_pred HHHHHHHHcCC--------CccccccccCCCCHHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|..|+..|.--....++.+|.++|-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 38888888885 699999987433478899999888755
No 105
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=51.75 E-value=18 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=27.0
Q ss_pred HHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 76 IRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 76 l~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+.++...|-...+||+.+ |-+...|+++....+++
T Consensus 144 l~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 144 IERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 333445677899999999 89999999998766554
No 106
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=48.47 E-value=29 Score=29.17 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCC--hHHHhhhCCCCCcc---cccccccccCC-CccccCCCChHHHHHHH
Q 023744 20 DEALQQLVQKHGPRN--WSLISKSIPGRSGK---SCRLRWCNQLS-PQVEHRAFTPEEDEMII 76 (278)
Q Consensus 20 D~~L~~lV~kyG~~n--W~~Ia~~lp~Rs~k---qcr~Rw~n~L~-p~i~k~~WT~EED~~Ll 76 (278)
+.++..|...-|.++ =..|-..+.+.+.. .+.+.|..-.. |..-.|-||.|+|+.|.
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 344555545556543 23344444444433 44445544333 55678999999999876
No 107
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=47.72 E-value=14 Score=28.08 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=27.9
Q ss_pred HHHHHHHHcCC--------CccccccccCCCC----HHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpgRT----~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|.+|+..|.--. ...+|..|.++|-.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47777888885 6999999883222 46888888887754
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.99 E-value=9.4 Score=30.29 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=30.2
Q ss_pred HHHHHHHHcCC--------CccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
.|..+|.+.|+ .|.+|+..|.--....+|+.|.++|-.-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 37778888875 5999999874334889999998888663
No 109
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=44.97 E-value=20 Score=25.71 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHH----cCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 70 EEDEMIIRAHAR----FGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 70 EED~~Ll~~v~~----~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
+.+..++.+..- .|..+.+||..+ |-+...|+.+....+++.
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 345556666554 567899999999 999999999887666553
No 110
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.82 E-value=23 Score=26.01 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=35.4
Q ss_pred cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
....|+.|-+.|. ++. .|..-.+||+.| |-+...|+++...++++.
T Consensus 27 ~~~Lt~rE~~Vl~-l~~-~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQ-EVE-KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHH-HHH-TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHH-HHH-cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4567877766554 444 888899999999 899999999998877664
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.79 E-value=24 Score=24.29 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 67 WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
+|+.|- .++.++ ..|....+||+.+ |-+...|+.+....+++-
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455554 444555 6788899999999 889999999887666553
No 112
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=43.52 E-value=13 Score=28.93 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=28.1
Q ss_pred HHHHHHHHcCC--------CccccccccCCCC----HHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpgRT----~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|.+|+..|.--. ...+|.+|.++|-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888885 6999999873221 46788988877765
No 113
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=42.40 E-value=28 Score=22.72 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 72 DEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 72 D~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
+..++.+ ...|..-.+||+.+ |-+...|+.+....+++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4456666 46788899999999 899999999987776654
No 114
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.61 E-value=24 Score=27.73 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=27.7
Q ss_pred HHHHHHHHcCC--------CccccccccCCC--C--HHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNGR--T--DNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpgR--T--~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|.+|+..|.-- + ...+|.+|.++|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 47788888885 699999987321 1 35788888877765
No 115
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=41.42 E-value=22 Score=26.79 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCCCcc-------ccCCCChHHHHHHHH
Q 023744 20 DEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQV-------EHRAFTPEEDEMIIR 77 (278)
Q Consensus 20 D~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i-------~k~~WT~EED~~Ll~ 77 (278)
+.+|.++|+.|| |..++..+.-|+- ..+|.+ ++.+|-.+..+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I~CF---------~~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNINCF---------KKDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTSSST---------TSSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcccccC---------CCCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 578999999999 9999999854432 123433 567888887776653
No 116
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.16 E-value=18 Score=28.53 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.1
Q ss_pred HHHHHHHHcCC--------CccccccccCCCC----HHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNGRT----DNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpgRT----~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|.+|+..|.--+ ...+|..|.++|-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47788888885 6999999873222 46788888887765
No 117
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.61 E-value=26 Score=25.70 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 66 ~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
.+|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++.
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666655544 45 7888899999999 899999999987776654
No 118
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=40.13 E-value=25 Score=24.99 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 66 ~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
.+|+.|-+.| .++ ..|..-.+||+.+ |-+...|+.+....+++.
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4666665544 444 6788899999999 899999999887666553
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=39.99 E-value=26 Score=27.93 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=26.6
Q ss_pred HHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 76 IRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 76 l~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+.+....|-...+||+.+ |-+...|+++....+++
T Consensus 149 l~l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 149 ITLRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp HHHHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 333344577899999999 89999999988765544
No 120
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.14 E-value=28 Score=23.43 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=33.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 65 RAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 65 ~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
..+|+.|-+.|. ++ ..|....+||+.+ |-+...|+.+....+++-
T Consensus 10 ~~L~~~e~~il~-~~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFE-LL-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HH-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 456766665554 44 6777899999999 889999999887666543
No 121
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=38.46 E-value=13 Score=29.39 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=31.2
Q ss_pred ChHHHhhhC--CCCC---cccccccccccCCCccccCCCChHHHHHHHHHHH
Q 023744 34 NWSLISKSI--PGRS---GKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHA 80 (278)
Q Consensus 34 nW~~Ia~~l--p~Rs---~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~~v~ 80 (278)
-|..|+..| +.-. ....+.+|.++|.|. ..++++|-..|.+-+.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 399999998 2211 245688888888654 3488899888877664
No 122
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=37.46 E-value=31 Score=24.84 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 66 ~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
..|+.|-+.| .++ ..|..-.+||+.| |-+...|+.+....+++.
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4666666555 444 6788899999999 899999999987766554
No 123
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=37.13 E-value=21 Score=29.07 Aligned_cols=36 Identities=28% Similarity=0.555 Sum_probs=28.3
Q ss_pred hHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHH
Q 023744 35 WSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIR 77 (278)
Q Consensus 35 W~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~ 77 (278)
-..||..+.|++..+||..| ++. ..||+||++.|.+
T Consensus 118 c~~vA~~ikgkt~eeir~~f------~I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIKGKTPEEIRTTF------NIK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTTTCCHHHHHHHT------TCC-CCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHc------CCC-CCCCHHHHHHHHH
Confidence 36788899999999999977 222 3599999988764
No 124
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.59 E-value=39 Score=25.77 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 70 EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+.+..++.++...|-...+||+.+ |-+...|+.+....+++
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566777777888999999999 89999999887655544
No 125
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.29 E-value=36 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.9
Q ss_pred HHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 80 ARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 80 ~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
...|-...+||+.| |-+...|+.+....+++
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34677899999999 89999999988765544
No 126
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=31.71 E-value=30 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHHHcCC--------CccccccccC--CC---CHHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLN--GR---TDNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lp--gR---T~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|.+|+..|. .. ....+|..|.++|-.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 47788888885 6999999772 22 256889999887755
No 127
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=31.11 E-value=13 Score=27.82 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=25.3
Q ss_pred HHHHHHHHcCC--------CccccccccCC---C-CHHHHHHHHHHHhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNG---R-TDNAIKNHWNSTLK 110 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpg---R-T~~~~knRw~~~lk 110 (278)
.|..+|.+.|+ .|.+|+..|.- - ....+|+.|.++|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 37777777774 69999998732 1 24677888866553
No 128
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.99 E-value=43 Score=27.37 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 71 EDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 71 ED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
.+..++.++...|-...+||+.| |-+...|+.+....+++
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444445445677899999999 99999999887655544
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=30.84 E-value=34 Score=26.93 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCC--------CccccccccC--CC---CHHHHHHHHHHHhhh
Q 023744 73 EMIIRAHARFGN--------KWATIARLLN--GR---TDNAIKNHWNSTLKR 111 (278)
Q Consensus 73 ~~Ll~~v~~~G~--------kW~~IA~~lp--gR---T~~~~knRw~~~lk~ 111 (278)
-.|..+|.+.|+ .|.+|+..|. .. ....+|..|.++|-.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 357788888885 6999999772 22 257889999888765
No 130
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.21 E-value=66 Score=19.09 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHH
Q 023744 66 AFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105 (278)
Q Consensus 66 ~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw 105 (278)
..++++-..++.++ ..|....+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667666777665 4677789999999 88888877654
No 131
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.59 E-value=11 Score=29.41 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CChHHHhhhCCCCCcccccccccccCCC
Q 023744 22 ALQQLVQKHGP-------RNWSLISKSIPGRSGKSCRLRWCNQLSP 60 (278)
Q Consensus 22 ~L~~lV~kyG~-------~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~p 60 (278)
.|..+|.+.|. +.|..|+..|.--....++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 46667776653 3499999988433467788888887754
No 132
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=28.57 E-value=16 Score=27.86 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=27.8
Q ss_pred HHHHHHHHcCC--------CccccccccCC--C---CHHHHHHHHHHHhhh
Q 023744 74 MIIRAHARFGN--------KWATIARLLNG--R---TDNAIKNHWNSTLKR 111 (278)
Q Consensus 74 ~Ll~~v~~~G~--------kW~~IA~~lpg--R---T~~~~knRw~~~lk~ 111 (278)
.|..+|.+.|+ .|.+|+..|.- . ....++..|.++|-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777888874 69999998731 1 236789999888765
No 133
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=27.62 E-value=40 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHcCC-CccccccccCCCCHHHHHHHHHHHhhhhhh
Q 023744 69 PEEDEMIIRAHARFGN-KWATIARLLNGRTDNAIKNHWNSTLKRKCS 114 (278)
Q Consensus 69 ~EED~~Ll~~v~~~G~-kW~~IA~~lpgRT~~~~knRw~~~lk~k~~ 114 (278)
++-|..|+.+..+.|. .|.+||+.+ |=+...|+.|++.+.+.-+.
T Consensus 2 D~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 3567888888887774 699999999 99999999999887776544
No 134
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.38 E-value=74 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHH
Q 023744 69 PEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 105 (278)
Q Consensus 69 ~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw 105 (278)
.-|.+.|.++...+|++..+.|+.| |=+...+..+.
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788889999999999999988 76666665443
No 135
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=25.86 E-value=65 Score=24.56 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhh
Q 023744 67 FTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 111 (278)
Q Consensus 67 WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~ 111 (278)
+++ .+..++.++...|..-.+||..+ |-+...|+.+.....++
T Consensus 23 L~~-~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTD-KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCH-HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44566667767899999999999 99999999887665543
No 136
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.83 E-value=74 Score=23.69 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=35.8
Q ss_pred cCCCChHHHHHHHHHHHHcCCCccccccccCCCCHHHHHHHHHHHhhhh
Q 023744 64 HRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 112 (278)
Q Consensus 64 k~~WT~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~knRw~~~lk~k 112 (278)
....|+.|-+.| .++ ..|..-.+||+.| |-+...|+.+...++++.
T Consensus 32 ~~~Lt~re~~Vl-~l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVL-RLF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHH-HHH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 356777777665 444 3788899999999 889999999987777664
No 137
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=25.00 E-value=30 Score=27.91 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=27.1
Q ss_pred HHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHHH
Q 023744 36 SLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIR 77 (278)
Q Consensus 36 ~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll~ 77 (278)
..||..+.|++..+||..|. +. ..||+||++.|.+
T Consensus 120 ~~va~~i~gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIKGKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHSSCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 56788889999999999872 22 3499999988653
No 138
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.55 E-value=2.2e+02 Score=21.11 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChHHHhhhCCCCCcccccccccccCC------CccccCCCChHHHHHHHHHHHHcCCCc
Q 023744 13 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLS------PQVEHRAFTPEEDEMIIRAHARFGNKW 86 (278)
Q Consensus 13 g~WT~EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~L~------p~i~k~~WT~EED~~Ll~~v~~~G~kW 86 (278)
...|.++-..++.++. .| ..-..||+.+ +.+...++ +|.+... ..-.....+++++..|+.+...-.-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 4578888888888774 46 4589999988 66665553 2322211 111223578888888887733222233
Q ss_pred cccccccCC--CCHHHHHHHH
Q 023744 87 ATIARLLNG--RTDNAIKNHW 105 (278)
Q Consensus 87 ~~IA~~lpg--RT~~~~knRw 105 (278)
.+|+..| | -+...|....
T Consensus 81 ~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHHHH
Confidence 5677766 4 4555555443
No 139
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=23.45 E-value=31 Score=28.48 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=27.6
Q ss_pred hHHHhhhCCCCCcccccccccccCCCccccCCCChHHHHHHH
Q 023744 35 WSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMII 76 (278)
Q Consensus 35 W~~Ia~~lp~Rs~kqcr~Rw~n~L~p~i~k~~WT~EED~~Ll 76 (278)
-..||..+.|+++.++|..| ++. .-||+||++.|.
T Consensus 126 c~~vA~~ikgktpeeiR~~f------~I~-nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTF------NIV-NDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHH------TCC-CCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHc------CCC-CCCCHHHHHHHH
Confidence 46788888999999999877 222 349999999864
No 140
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=22.34 E-value=20 Score=28.85 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCChHHHhhhCCCCCccccccccccc
Q 023744 18 EEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ 57 (278)
Q Consensus 18 EED~~L~~lV~kyG~~nW~~Ia~~lp~Rs~kqcr~Rw~n~ 57 (278)
+-|..|+.++++.+...|.+||+.+ |-+...|+.|+.+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4578888888888888999999998 78888888877664
No 141
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=22.21 E-value=66 Score=21.64 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCCCHHHHHH
Q 023744 70 EEDEMIIRAHARFGNKWATIARLLNGRTDNAIKN 103 (278)
Q Consensus 70 EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~kn 103 (278)
-|.+.|.++...+++++.+.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 467788889999999999999988 555554444
No 142
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=21.01 E-value=65 Score=24.46 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHcCCCccccccccCCCCHHHHH
Q 023744 68 TPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIK 102 (278)
Q Consensus 68 T~EED~~Ll~~v~~~G~kW~~IA~~lpgRT~~~~k 102 (278)
++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 55556677777888999999999999 76665554
Done!