BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023746
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 161/288 (55%), Gaps = 19/288 (6%)
Query: 1 MEPLVRVQNLVQSGVSQVPRQYIQPLESRP--NNHSHDQNNNHTPQSSNINIPLIDLSN- 57
M + RV++L +SG+ +P++YI+P E N+ ++ PQ +P IDL N
Sbjct: 1 MVAVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQ-----VPTIDLKNI 55
Query: 58 -PNDTIL----LDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYA 112
+D + ++ ++ A +WG H+INHG+P L+ V+ G FF + +K +YA
Sbjct: 56 ESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF-SLSVEEKEKYA 114
Query: 113 CDNASAASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDY 172
D A+ +GYGSKL N L+W DYF H P +R+ S WP K +Y + +Y
Sbjct: 115 NDQATGKIQGYGSKL-ANNASGQLEWEDYFFHLAYPEEKRDLSIWP-KTPSDYIEATSEY 172
Query: 173 SDEMKLLCEKLLGFISESLGLTSSYMKDAVG---ELYQNITISYYPPCPQPELTLGLQPH 229
+ ++LL K+ +S LGL ++ VG EL + I+YYP CPQPEL LG++ H
Sbjct: 173 AKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAH 232
Query: 230 SDFGALTLLIQDDVEGLQVLKDGHWVTVQPLSEAIVVILSDQTQSVTS 277
+D ALT ++ + V GLQ+ +G WVT + + ++IV+ + D + +++
Sbjct: 233 TDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN 280
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 159/283 (56%), Gaps = 19/283 (6%)
Query: 6 RVQNLVQSGVSQVPRQYIQPLESRP--NNHSHDQNNNHTPQSSNINIPLIDLSN--PNDT 61
RV++L +SG+ +P++YI+P E N+ ++ PQ +P IDL N +D
Sbjct: 5 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQ-----VPTIDLKNIESDDE 59
Query: 62 IL----LDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYACDNAS 117
+ ++ ++ A +WG H+INHG+P L+ V+ G FF + +K +YA D A+
Sbjct: 60 KIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFF-SLSVEEKEKYANDQAT 118
Query: 118 AASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMK 177
+GYGSKL N L+W DYF H P +R+ S WP K +Y + +Y+ ++
Sbjct: 119 GKIQGYGSKL-ANNASGQLEWEDYFFHLAYPEEKRDLSIWP-KTPSDYIEATSEYAKCLR 176
Query: 178 LLCEKLLGFISESLGLTSSYMKDAVG---ELYQNITISYYPPCPQPELTLGLQPHSDFGA 234
LL K+ +S LGL ++ VG EL + I+YYP CPQPEL LG++ H+D A
Sbjct: 177 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSA 236
Query: 235 LTLLIQDDVEGLQVLKDGHWVTVQPLSEAIVVILSDQTQSVTS 277
LT ++ + V GLQ+ +G WVT + + ++IV+ + D + +++
Sbjct: 237 LTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN 279
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/283 (34%), Positives = 156/283 (55%), Gaps = 19/283 (6%)
Query: 6 RVQNLVQSGVSQVPRQYIQPLESRP--NNHSHDQNNNHTPQSSNINIPLIDLSN--PNDT 61
RV++L +SG+ +P++YI+P E N+ ++ PQ +P IDL N +D
Sbjct: 6 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQ-----VPTIDLKNIESDDE 60
Query: 62 IL----LDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPLTDKLEYACDNAS 117
+ ++ ++ A +WG H+INHG+P L V+ G FF + +K +YA D A+
Sbjct: 61 KIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFF-SLSVEEKEKYANDQAT 119
Query: 118 AASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMK 177
+GYGSKL N L+W DYF H P +R+ S WP K +Y + +Y+ ++
Sbjct: 120 GKIQGYGSKL-ANNASGQLEWEDYFFHLAYPEEKRDLSIWP-KTPSDYIEATSEYAKCLR 177
Query: 178 LLCEKLLGFISESLGLTSSYMKDAVG---ELYQNITISYYPPCPQPELTLGLQPHSDFGA 234
LL K+ +S LGL ++ VG EL I+YYP CPQPEL LG++ H+D A
Sbjct: 178 LLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSA 237
Query: 235 LTLLIQDDVEGLQVLKDGHWVTVQPLSEAIVVILSDQTQSVTS 277
LT ++ + V GLQ+ +G WVT + + ++IV + D + +++
Sbjct: 238 LTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSN 280
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 123/236 (52%), Gaps = 19/236 (8%)
Query: 49 NIPLIDLSNPND---TILLDSIRHACREWGAFHVINHGVPLKLLHDVRHVGRSFFEGCPL 105
N P+I L N + I+ AC WG F ++NHG+P ++ V + ++ C
Sbjct: 3 NFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE 62
Query: 106 TDKLEYACDNASAASEGYGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNY 165
E AS A EG +++ T DW F LP+S N S P L Y
Sbjct: 63 QRFKELV---ASKALEGVQAEV------TDXDWESTFFLKHLPIS--NISEVPD-LDEEY 110
Query: 166 GKVLCDYSDEMKLLCEKLLGFISESLGLTSSYMKDAV-GELYQNI--TISYYPPCPQPEL 222
+V D++ ++ L E+LL + E+LGL Y+K+A G N +S YPPCP+P+L
Sbjct: 111 REVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 223 TLGLQPHSDFGALTLLIQDD-VEGLQVLKDGHWVTVQPLSEAIVVILSDQTQSVTS 277
GL+ H+D G + LL QDD V GLQ+LKDG W+ V P +IVV L DQ + +T+
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITN 226
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 157 WPSKLIPNYGKVLCDYSDEMKLLCEKLLGFISESLGLTSSYMKDAVGELYQNITISYYPP 216
WP++ IP + + + + K+L I+ L L + K V + + + +YPP
Sbjct: 120 WPAE-IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPP 178
Query: 217 CPQPELTLGLQPHSDFGALTLLIQDDVEGLQVL-KDGHWVTVQPLSEAIVVILSDQTQSV 275
P+ + H D +TLL+ + GL+VL +DG W+ + P +V+ + D + +
Sbjct: 179 IPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERL 238
Query: 276 TS 277
T+
Sbjct: 239 TN 240
>pdb|2FKN|A Chain A, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|B Chain B, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|C Chain C, Crystal Structure Of Urocanase From Bacillus Subtilis
pdb|2FKN|D Chain D, Crystal Structure Of Urocanase From Bacillus Subtilis
Length = 552
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 57 NPNDTILLDSIRHACREWGAFHVINH 82
P D I+ I A R+W AFH I H
Sbjct: 41 KPEDLIVYGGIGKAARDWDAFHAIEH 66
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 123 YGSKLLVANDDTVLDWRDYFDHHTLPLSRRNPSRWPSKLIPNYGKVLCDYSDEMKLL 179
+ S+ V NDDTV+ D++ H L R P+ + LI G+ D S E+ ++
Sbjct: 133 HASRYDVDNDDTVITLADWY-HTAAKLGPRFPAGADATLINGKGRAPSDTSAELSVI 188
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 147 LPLSRRNPSRWPSKLIP-NYGKVLCDY 172
LP RR+P WP + +P N G VL D+
Sbjct: 204 LPEDRRSPGAWPMRYVPYNGGAVLPDW 230
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 147 LPLSRRNPSRWPSKLIP-NYGKVLCDY 172
LP RR+P WP + +P N G VL D+
Sbjct: 204 LPEDRRSPGAWPMRYVPYNGGAVLPDW 230
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 182 KLLGFISESLGLTSSYMKDAVGELYQNITISYYPPCPQPELTLGLQPHSDFGALTLLIQD 241
+LLG I L + + +DAV L +I + P Q L + LQP + +TLL D
Sbjct: 617 ELLGLIM----LRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTD 672
Query: 242 DVEGLQVLK 250
+ L + K
Sbjct: 673 TIISLLIKK 681
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,940,301
Number of Sequences: 62578
Number of extensions: 379295
Number of successful extensions: 1247
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 13
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)