Query 023747
Match_columns 278
No_of_seqs 166 out of 2354
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 2.3E-34 4.9E-39 255.7 23.5 241 31-278 248-493 (493)
2 PTZ00102 disulphide isomerase; 100.0 2.5E-29 5.4E-34 231.7 27.5 217 32-257 244-467 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.1E-28 2.3E-33 226.4 27.0 216 39-259 235-458 (462)
4 KOG0191 Thioredoxin/protein di 100.0 1.1E-27 2.5E-32 214.2 18.7 216 27-258 37-255 (383)
5 TIGR02187 GlrX_arch Glutaredox 99.9 3.8E-23 8.2E-28 170.8 18.4 187 38-253 20-214 (215)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.9E-20 6.4E-25 137.1 11.7 101 147-251 8-113 (113)
7 KOG0910 Thioredoxin-like prote 99.8 4.3E-20 9.4E-25 139.0 9.7 104 149-256 44-149 (150)
8 PF00085 Thioredoxin: Thioredo 99.8 1.3E-19 2.8E-24 132.0 11.2 101 150-254 1-103 (103)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.3E-19 2.7E-24 132.6 10.1 100 149-251 2-104 (104)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.8E-19 3.8E-24 131.2 10.7 97 149-250 2-100 (101)
11 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3.7E-19 8E-24 129.9 11.7 102 150-251 2-104 (104)
12 KOG4277 Uncharacterized conser 99.8 1.1E-18 2.4E-23 144.1 15.0 187 32-255 38-231 (468)
13 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.6E-19 7.8E-24 131.1 10.4 101 149-251 2-108 (108)
14 KOG0190 Protein disulfide isom 99.8 4.8E-18 1E-22 151.9 15.6 210 15-259 23-239 (493)
15 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.6E-18 3.5E-23 127.7 10.6 101 150-252 2-109 (109)
16 cd03065 PDI_b_Calsequestrin_N 99.8 2.2E-18 4.7E-23 128.0 10.3 103 148-255 9-119 (120)
17 cd03001 PDI_a_P5 PDIa family, 99.8 6.1E-18 1.3E-22 123.3 10.8 99 150-251 2-102 (103)
18 cd02994 PDI_a_TMX PDIa family, 99.8 6.1E-18 1.3E-22 123.0 10.7 98 149-253 2-101 (101)
19 PRK09381 trxA thioredoxin; Pro 99.8 1.4E-17 3.1E-22 122.8 12.1 104 148-255 3-108 (109)
20 COG3118 Thioredoxin domain-con 99.8 4.6E-18 9.9E-23 141.4 10.3 105 149-257 24-132 (304)
21 cd02993 PDI_a_APS_reductase PD 99.7 1.7E-17 3.7E-22 122.3 11.0 101 149-251 2-109 (109)
22 cd03006 PDI_a_EFP1_N PDIa fami 99.7 1.2E-17 2.7E-22 123.1 9.2 103 17-125 9-113 (113)
23 cd03005 PDI_a_ERp46 PDIa famil 99.7 2.4E-17 5.1E-22 120.0 10.4 98 150-251 2-102 (102)
24 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.8E-17 6.1E-22 120.1 10.8 101 150-251 2-105 (105)
25 PTZ00102 disulphide isomerase; 99.7 2.8E-16 6E-21 145.0 20.0 221 19-257 34-340 (477)
26 cd02956 ybbN ybbN protein fami 99.7 2.7E-17 5.9E-22 118.4 10.5 93 156-252 1-96 (96)
27 TIGR01126 pdi_dom protein disu 99.7 2.4E-17 5.3E-22 119.7 9.9 100 153-255 1-102 (102)
28 cd02963 TRX_DnaJ TRX domain, D 99.7 1.8E-17 3.9E-22 122.6 8.7 99 152-253 8-110 (111)
29 PTZ00443 Thioredoxin domain-co 99.7 3.3E-17 7.1E-22 134.7 10.8 107 147-257 29-141 (224)
30 PHA02278 thioredoxin-like prot 99.7 2.9E-17 6.4E-22 119.1 8.8 91 155-250 4-100 (103)
31 cd03007 PDI_a_ERp29_N PDIa fam 99.7 3.3E-17 7.2E-22 120.2 8.7 98 150-254 3-115 (116)
32 cd02954 DIM1 Dim1 family; Dim1 99.7 2.2E-17 4.7E-22 120.8 7.3 78 155-234 2-82 (114)
33 KOG0912 Thiol-disulfide isomer 99.7 3.1E-16 6.7E-21 129.8 14.6 208 32-270 8-227 (375)
34 cd02997 PDI_a_PDIR PDIa family 99.7 1.1E-16 2.3E-21 116.9 10.5 99 150-251 2-104 (104)
35 cd02999 PDI_a_ERp44_like PDIa 99.7 6.2E-17 1.3E-21 117.3 9.0 82 164-251 16-100 (100)
36 PRK10996 thioredoxin 2; Provis 99.7 2.4E-16 5.2E-21 121.1 11.1 103 148-255 35-139 (139)
37 TIGR01068 thioredoxin thioredo 99.7 2.3E-16 5.1E-21 114.2 10.2 98 154-255 2-101 (101)
38 TIGR01130 ER_PDI_fam protein d 99.7 1.1E-15 2.4E-20 140.3 16.8 208 20-259 4-219 (462)
39 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 2.5E-16 5.4E-21 114.5 9.2 98 19-125 3-101 (101)
40 cd02962 TMX2 TMX2 family; comp 99.7 3.6E-16 7.8E-21 121.1 10.4 108 139-250 20-147 (152)
41 cd02985 TRX_CDSP32 TRX family, 99.7 3.5E-16 7.6E-21 114.1 9.5 92 155-252 3-100 (103)
42 cd02948 TRX_NDPK TRX domain, T 99.7 4.7E-16 1E-20 113.2 9.7 96 153-253 5-101 (102)
43 cd02957 Phd_like Phosducin (Ph 99.7 4.8E-16 1E-20 115.4 9.8 99 148-251 4-112 (113)
44 cd02965 HyaE HyaE family; HyaE 99.7 6.2E-16 1.3E-20 112.4 10.0 94 150-248 12-109 (111)
45 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 2.4E-16 5.2E-21 115.2 7.9 100 19-125 3-104 (104)
46 TIGR00424 APS_reduc 5'-adenyly 99.7 8E-16 1.7E-20 138.5 12.6 105 147-253 350-461 (463)
47 PLN02309 5'-adenylylsulfate re 99.7 7.9E-16 1.7E-20 138.4 12.0 106 147-254 344-456 (457)
48 cd02992 PDI_a_QSOX PDIa family 99.6 2.1E-15 4.6E-20 111.9 11.1 99 149-247 2-108 (114)
49 cd02989 Phd_like_TxnDC9 Phosdu 99.6 2.4E-15 5.3E-20 111.4 10.4 98 148-251 4-112 (113)
50 cd03000 PDI_a_TMX3 PDIa family 99.6 3.3E-15 7.1E-20 109.2 10.5 94 156-254 7-103 (104)
51 PF00085 Thioredoxin: Thioredo 99.6 1.9E-15 4E-20 109.9 8.9 100 21-128 3-103 (103)
52 cd02996 PDI_a_ERp44 PDIa famil 99.6 1.5E-15 3.2E-20 111.8 8.4 99 19-125 3-108 (108)
53 cd02961 PDI_a_family Protein D 99.6 2.5E-15 5.4E-20 108.4 9.2 98 152-251 2-101 (101)
54 cd02987 Phd_like_Phd Phosducin 99.6 4.9E-15 1.1E-19 118.0 11.1 106 146-254 60-174 (175)
55 COG3118 Thioredoxin domain-con 99.6 1.8E-15 3.9E-20 126.0 8.0 107 19-131 25-132 (304)
56 PTZ00443 Thioredoxin domain-co 99.6 6.6E-15 1.4E-19 121.1 10.5 107 18-130 31-140 (224)
57 cd02993 PDI_a_APS_reductase PD 99.6 3.2E-15 6.9E-20 110.2 7.8 103 19-125 3-109 (109)
58 KOG0191 Thioredoxin/protein di 99.6 2.7E-15 5.9E-20 134.4 8.8 203 19-233 146-357 (383)
59 cd02949 TRX_NTR TRX domain, no 99.6 7.8E-15 1.7E-19 105.8 9.5 92 157-252 4-97 (97)
60 cd03002 PDI_a_MPD1_like PDI fa 99.6 4.7E-15 1E-19 109.2 8.4 102 19-125 2-108 (109)
61 cd03065 PDI_b_Calsequestrin_N 99.6 4E-15 8.7E-20 110.5 7.7 102 19-129 11-119 (120)
62 PLN00410 U5 snRNP protein, DIM 99.6 1.3E-14 2.7E-19 110.4 10.2 99 154-256 10-121 (142)
63 KOG0907 Thioredoxin [Posttrans 99.6 6.3E-15 1.4E-19 107.0 8.2 84 164-253 19-104 (106)
64 KOG0910 Thioredoxin-like prote 99.6 7.2E-15 1.6E-19 110.9 8.7 96 28-129 52-148 (150)
65 cd03007 PDI_a_ERp29_N PDIa fam 99.6 7E-15 1.5E-19 108.0 8.1 103 19-127 3-114 (116)
66 KOG0912 Thiol-disulfide isomer 99.6 6E-15 1.3E-19 122.2 7.7 104 154-259 2-110 (375)
67 cd02984 TRX_PICOT TRX domain, 99.6 1.7E-14 3.7E-19 103.9 9.1 92 155-251 2-96 (97)
68 cd02986 DLP Dim1 family, Dim1- 99.6 1.5E-14 3.3E-19 105.0 8.3 76 156-233 3-81 (114)
69 cd02950 TxlA TRX-like protein 99.6 4.8E-14 1E-18 108.7 11.7 98 156-258 11-113 (142)
70 cd03001 PDI_a_P5 PDIa family, 99.6 1.8E-14 4E-19 104.8 8.7 85 36-125 17-102 (103)
71 cd02988 Phd_like_VIAF Phosduci 99.6 2.5E-14 5.4E-19 115.4 9.9 102 146-253 80-190 (192)
72 cd02994 PDI_a_TMX PDIa family, 99.6 3E-14 6.5E-19 103.5 9.2 96 19-126 3-100 (101)
73 cd02953 DsbDgamma DsbD gamma f 99.5 2.5E-14 5.5E-19 104.4 8.8 91 156-251 2-103 (104)
74 cd02999 PDI_a_ERp44_like PDIa 99.5 3E-14 6.4E-19 103.2 8.7 82 36-125 17-100 (100)
75 cd02975 PfPDO_like_N Pyrococcu 99.5 4.7E-14 1E-18 104.5 9.9 90 164-256 20-111 (113)
76 cd02963 TRX_DnaJ TRX domain, D 99.5 3.3E-14 7.1E-19 105.1 7.7 87 35-127 22-110 (111)
77 KOG4277 Uncharacterized conser 99.5 1.3E-14 2.7E-19 120.2 5.4 93 164-259 41-136 (468)
78 PTZ00051 thioredoxin; Provisio 99.5 8E-14 1.7E-18 100.6 9.0 91 150-247 2-95 (98)
79 TIGR01126 pdi_dom protein disu 99.5 7.3E-14 1.6E-18 101.3 8.8 87 36-128 12-101 (102)
80 cd03005 PDI_a_ERp46 PDIa famil 99.5 4.7E-14 1E-18 102.5 7.5 96 20-125 3-102 (102)
81 TIGR01295 PedC_BrcD bacterioci 99.5 1.8E-13 3.8E-18 102.6 10.7 96 150-252 8-121 (122)
82 cd02956 ybbN ybbN protein fami 99.5 2E-13 4.3E-18 98.1 10.3 84 37-126 12-96 (96)
83 PF13848 Thioredoxin_6: Thiore 99.5 3.6E-12 7.9E-17 102.5 18.9 173 53-253 7-184 (184)
84 cd02998 PDI_a_ERp38 PDIa famil 99.5 1.2E-13 2.6E-18 100.7 8.6 99 20-125 3-105 (105)
85 KOG1731 FAD-dependent sulfhydr 99.5 9.5E-14 2.1E-18 124.4 8.9 227 12-258 35-272 (606)
86 PRK09381 trxA thioredoxin; Pro 99.5 2.6E-13 5.6E-18 99.9 9.8 103 19-129 5-108 (109)
87 KOG0908 Thioredoxin-like prote 99.5 2.3E-13 5E-18 110.0 10.0 105 150-260 3-111 (288)
88 cd02947 TRX_family TRX family; 99.5 4.3E-13 9.3E-18 94.8 9.7 89 157-251 2-92 (93)
89 cd02982 PDI_b'_family Protein 99.5 5.7E-13 1.2E-17 97.0 10.1 87 37-128 12-102 (103)
90 cd03000 PDI_a_TMX3 PDIa family 99.5 6.7E-13 1.5E-17 96.9 10.1 87 35-128 13-103 (104)
91 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 3.1E-13 6.6E-18 98.4 8.0 99 19-125 2-104 (104)
92 PLN02309 5'-adenylylsulfate re 99.4 4E-13 8.8E-18 121.1 9.1 111 13-128 341-456 (457)
93 TIGR00424 APS_reduc 5'-adenyly 99.4 5.4E-13 1.2E-17 120.3 9.6 109 15-127 349-461 (463)
94 cd02954 DIM1 Dim1 family; Dim1 99.4 1.4E-12 3.1E-17 95.5 9.7 66 36-105 13-79 (114)
95 cd02961 PDI_a_family Protein D 99.4 6.9E-13 1.5E-17 95.5 7.4 90 31-125 9-101 (101)
96 PRK10996 thioredoxin 2; Provis 99.4 1.3E-12 2.9E-17 100.3 9.0 91 32-128 47-138 (139)
97 PHA02278 thioredoxin-like prot 99.4 8.5E-13 1.8E-17 95.8 7.3 92 30-124 7-100 (103)
98 PTZ00062 glutaredoxin; Provisi 99.4 3.9E-12 8.4E-17 103.1 11.9 148 38-231 18-177 (204)
99 cd02951 SoxW SoxW family; SoxW 99.4 2.7E-12 6E-17 96.8 10.1 95 158-256 6-120 (125)
100 cd02950 TxlA TRX-like protein 99.4 2.8E-12 6.2E-17 98.8 9.8 101 30-133 13-114 (142)
101 cd02982 PDI_b'_family Protein 99.4 2.1E-12 4.6E-17 93.9 8.6 84 166-254 12-102 (103)
102 PTZ00062 glutaredoxin; Provisi 99.4 3.3E-12 7.2E-17 103.5 10.4 94 154-259 5-98 (204)
103 cd02997 PDI_a_PDIR PDIa family 99.4 1.7E-12 3.7E-17 94.5 7.4 99 20-125 3-104 (104)
104 cd02965 HyaE HyaE family; HyaE 99.4 4E-12 8.8E-17 92.5 9.1 94 20-122 13-109 (111)
105 PLN00410 U5 snRNP protein, DIM 99.4 1E-11 2.2E-16 94.6 11.0 93 36-132 22-123 (142)
106 cd02948 TRX_NDPK TRX domain, T 99.4 3.4E-12 7.3E-17 92.8 7.9 88 32-127 12-101 (102)
107 TIGR01068 thioredoxin thioredo 99.3 1.2E-11 2.6E-16 89.3 10.6 87 36-128 13-100 (101)
108 KOG0907 Thioredoxin [Posttrans 99.3 8.1E-12 1.7E-16 90.8 9.2 84 36-127 20-104 (106)
109 cd02985 TRX_CDSP32 TRX family, 99.3 3.3E-11 7.2E-16 87.7 10.4 86 36-126 14-100 (103)
110 TIGR00411 redox_disulf_1 small 99.3 2.1E-11 4.7E-16 84.7 9.0 78 169-254 2-81 (82)
111 cd02952 TRP14_like Human TRX-r 99.3 1E-11 2.2E-16 92.0 7.6 77 154-232 8-102 (119)
112 cd02953 DsbDgamma DsbD gamma f 99.3 2.3E-11 5E-16 88.7 9.3 91 33-125 7-103 (104)
113 cd02992 PDI_a_QSOX PDIa family 99.3 1.4E-11 3.1E-16 91.3 8.0 100 18-122 2-109 (114)
114 TIGR03143 AhpF_homolog putativ 99.3 2.1E-10 4.6E-15 107.7 17.7 184 37-251 365-554 (555)
115 cd02962 TMX2 TMX2 family; comp 99.3 1.4E-11 3.1E-16 95.5 8.0 81 19-105 30-118 (152)
116 cd02957 Phd_like Phosducin (Ph 99.3 1.3E-11 2.8E-16 91.4 7.3 80 19-105 6-86 (113)
117 cd02949 TRX_NTR TRX domain, no 99.3 4.5E-11 9.8E-16 86.0 9.8 87 34-126 10-97 (97)
118 cd02989 Phd_like_TxnDC9 Phosdu 99.3 2.5E-11 5.4E-16 89.8 8.5 92 29-125 14-112 (113)
119 cd02975 PfPDO_like_N Pyrococcu 99.3 4.9E-11 1.1E-15 88.3 9.9 90 35-130 20-111 (113)
120 cd02959 ERp19 Endoplasmic reti 99.3 2.1E-11 4.5E-16 90.8 7.7 94 163-256 16-114 (117)
121 cd02986 DLP Dim1 family, Dim1- 99.2 1.3E-10 2.8E-15 84.6 11.2 89 36-129 13-111 (114)
122 KOG1731 FAD-dependent sulfhydr 99.2 5.9E-12 1.3E-16 113.0 5.1 117 139-255 30-153 (606)
123 TIGR02187 GlrX_arch Glutaredox 99.2 3.8E-11 8.2E-16 99.2 8.8 91 166-258 19-114 (215)
124 cd02984 TRX_PICOT TRX domain, 99.2 5.3E-11 1.1E-15 85.5 6.9 82 37-125 14-96 (97)
125 cd02987 Phd_like_Phd Phosducin 99.2 2.6E-10 5.6E-15 90.9 9.9 105 17-127 62-173 (175)
126 PTZ00051 thioredoxin; Provisio 99.1 1.4E-10 2.9E-15 83.6 6.6 85 30-122 11-96 (98)
127 TIGR00412 redox_disulf_2 small 99.1 1.5E-10 3.2E-15 79.3 5.8 72 171-251 3-75 (76)
128 cd02947 TRX_family TRX family; 99.1 4.2E-10 9.1E-15 79.3 8.2 84 35-125 8-92 (93)
129 TIGR00411 redox_disulf_1 small 99.1 1.8E-09 3.9E-14 74.9 10.5 79 40-128 2-81 (82)
130 cd02951 SoxW SoxW family; SoxW 99.1 1.5E-09 3.2E-14 81.8 10.0 96 34-131 10-121 (125)
131 PRK00293 dipZ thiol:disulfide 99.0 1.2E-09 2.5E-14 102.6 10.6 103 149-254 453-569 (571)
132 KOG0908 Thioredoxin-like prote 99.0 6.5E-10 1.4E-14 90.2 7.6 86 37-130 21-107 (288)
133 PF13098 Thioredoxin_2: Thiore 99.0 2.3E-10 4.9E-15 84.5 3.9 84 164-251 3-112 (112)
134 TIGR02740 TraF-like TraF-like 99.0 6.3E-09 1.4E-13 88.6 11.6 86 166-256 166-265 (271)
135 PHA02125 thioredoxin-like prot 99.0 2.1E-09 4.6E-14 73.4 6.8 67 170-249 2-71 (75)
136 PRK11509 hydrogenase-1 operon 99.0 6.5E-09 1.4E-13 78.0 9.8 105 150-258 19-127 (132)
137 TIGR02738 TrbB type-F conjugat 99.0 5.8E-09 1.3E-13 81.1 9.8 84 166-254 50-152 (153)
138 cd02952 TRP14_like Human TRX-r 99.0 1.6E-09 3.5E-14 80.3 6.2 80 24-105 6-100 (119)
139 cd03072 PDI_b'_ERp44 PDIb' fam 98.9 5.3E-09 1.2E-13 77.0 8.6 95 32-132 11-111 (111)
140 cd02955 SSP411 TRX domain, SSP 98.9 7.7E-09 1.7E-13 77.5 8.9 95 156-253 6-117 (124)
141 TIGR01295 PedC_BrcD bacterioci 98.9 3.5E-09 7.5E-14 79.4 6.9 94 28-126 14-121 (122)
142 cd02988 Phd_like_VIAF Phosduci 98.9 3.3E-09 7.1E-14 85.7 7.0 104 16-127 81-190 (192)
143 PRK14018 trifunctional thiored 98.9 7.9E-09 1.7E-13 94.8 9.7 87 163-252 53-170 (521)
144 PF01216 Calsequestrin: Calseq 98.9 3.6E-07 7.8E-12 78.0 18.4 215 10-260 24-252 (383)
145 PF13905 Thioredoxin_8: Thiore 98.8 1.3E-08 2.8E-13 72.7 7.3 66 166-231 1-93 (95)
146 cd02973 TRX_GRX_like Thioredox 98.8 9.2E-09 2E-13 68.5 5.9 55 169-226 2-58 (67)
147 PRK03147 thiol-disulfide oxido 98.8 4.1E-08 9E-13 78.1 10.6 102 149-253 45-170 (173)
148 PRK15412 thiol:disulfide inter 98.8 3.8E-08 8.3E-13 79.4 10.4 86 165-256 67-177 (185)
149 PRK11509 hydrogenase-1 operon 98.8 7.7E-08 1.7E-12 72.2 11.0 117 1-131 6-126 (132)
150 TIGR00385 dsbE periplasmic pro 98.8 1.8E-08 3.8E-13 80.4 8.0 85 165-256 62-172 (173)
151 cd02983 P5_C P5 family, C-term 98.8 6.5E-08 1.4E-12 73.2 10.6 77 52-134 40-120 (130)
152 cd03011 TlpA_like_ScsD_MtbDsbE 98.8 3.7E-08 7.9E-13 73.8 9.1 92 151-249 6-120 (123)
153 cd03008 TryX_like_RdCVF Trypar 98.8 2.2E-08 4.8E-13 77.0 6.9 68 165-232 24-124 (146)
154 KOG0913 Thiol-disulfide isomer 98.8 4.2E-09 9.1E-14 84.9 2.9 101 148-255 24-126 (248)
155 cd02964 TryX_like_family Trypa 98.8 3.3E-08 7.1E-13 75.2 7.7 68 165-232 16-111 (132)
156 cd03009 TryX_like_TryX_NRX Try 98.8 3.3E-08 7E-13 75.1 7.6 68 165-232 17-111 (131)
157 cd03010 TlpA_like_DsbE TlpA-li 98.7 5.4E-08 1.2E-12 73.4 8.3 77 165-247 24-126 (127)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 5.8E-08 1.3E-12 68.5 7.8 74 166-248 11-87 (89)
159 PRK15317 alkyl hydroperoxide r 98.7 8.3E-07 1.8E-11 82.9 17.4 178 38-257 19-200 (517)
160 cd03073 PDI_b'_ERp72_ERp57 PDI 98.7 1.9E-07 4.1E-12 68.7 9.5 84 39-128 16-110 (111)
161 PRK14018 trifunctional thiored 98.7 3.7E-07 8E-12 83.9 13.2 90 34-128 53-172 (521)
162 cd02958 UAS UAS family; UAS is 98.7 3.6E-07 7.8E-12 67.6 10.6 90 163-256 14-112 (114)
163 PLN02919 haloacid dehalogenase 98.7 9E-08 1.9E-12 95.8 9.5 89 165-256 419-537 (1057)
164 cd02966 TlpA_like_family TlpA- 98.6 1.8E-07 3.9E-12 68.4 8.3 66 166-232 19-109 (116)
165 PRK13728 conjugal transfer pro 98.6 4.8E-07 1.1E-11 71.8 10.8 84 170-257 73-173 (181)
166 PF13098 Thioredoxin_2: Thiore 98.6 9.9E-08 2.2E-12 70.2 6.5 88 36-125 4-112 (112)
167 TIGR03140 AhpF alkyl hydropero 98.6 2.9E-06 6.2E-11 79.3 17.2 179 38-257 19-201 (515)
168 PF02114 Phosducin: Phosducin; 98.6 3.3E-07 7.1E-12 77.6 9.7 105 147-254 124-237 (265)
169 TIGR02740 TraF-like TraF-like 98.6 5E-07 1.1E-11 77.0 10.6 90 37-129 166-264 (271)
170 cd02960 AGR Anterior Gradient 98.6 5.4E-07 1.2E-11 67.6 9.4 69 163-233 20-93 (130)
171 PRK03147 thiol-disulfide oxido 98.6 8.8E-07 1.9E-11 70.4 11.3 91 36-128 60-171 (173)
172 cd02959 ERp19 Endoplasmic reti 98.6 1.6E-07 3.6E-12 69.8 6.4 92 34-129 16-113 (117)
173 TIGR00412 redox_disulf_2 small 98.6 5.1E-07 1.1E-11 61.7 8.2 71 42-125 3-75 (76)
174 cd02967 mauD Methylamine utili 98.5 2.3E-07 5E-12 68.5 6.5 40 165-206 20-59 (114)
175 cd02973 TRX_GRX_like Thioredox 98.5 5.7E-07 1.2E-11 59.7 7.6 54 40-98 2-56 (67)
176 PF13899 Thioredoxin_7: Thiore 98.5 9.8E-08 2.1E-12 66.3 3.9 64 163-228 14-81 (82)
177 KOG0914 Thioredoxin-like prote 98.5 1.4E-07 3.1E-12 75.2 5.2 88 146-234 122-219 (265)
178 PHA02125 thioredoxin-like prot 98.5 1.1E-06 2.5E-11 59.8 8.5 48 41-98 2-50 (75)
179 PRK00293 dipZ thiol:disulfide 98.5 9E-07 2E-11 83.3 10.6 90 36-128 473-569 (571)
180 PF13848 Thioredoxin_6: Thiore 98.5 7.7E-07 1.7E-11 71.3 8.9 94 29-127 86-184 (184)
181 COG4232 Thiol:disulfide interc 98.5 3.2E-07 7E-12 83.8 7.1 100 151-254 457-567 (569)
182 TIGR02738 TrbB type-F conjugat 98.5 2.1E-06 4.6E-11 66.8 10.5 95 32-128 45-152 (153)
183 cd02955 SSP411 TRX domain, SSP 98.4 1.6E-06 3.5E-11 64.9 9.0 92 32-128 10-118 (124)
184 smart00594 UAS UAS domain. 98.4 3E-06 6.4E-11 63.5 9.6 87 163-251 24-121 (122)
185 PF13905 Thioredoxin_8: Thiore 98.4 2.5E-06 5.4E-11 60.7 8.8 67 37-105 1-92 (95)
186 cd03012 TlpA_like_DipZ_like Tl 98.4 1.4E-06 3E-11 65.6 7.9 43 165-208 22-64 (126)
187 cd03010 TlpA_like_DsbE TlpA-li 98.4 2.5E-06 5.5E-11 64.2 8.5 78 37-121 25-126 (127)
188 cd03067 PDI_b_PDIR_N PDIb fami 98.4 1E-06 2.2E-11 61.7 5.7 99 27-128 9-111 (112)
189 TIGR00385 dsbE periplasmic pro 98.3 4.2E-06 9E-11 66.7 9.5 89 36-129 62-171 (173)
190 cd03026 AhpF_NTD_C TRX-GRX-lik 98.3 5.5E-06 1.2E-10 58.4 8.9 72 39-121 14-86 (89)
191 PF07912 ERp29_N: ERp29, N-ter 98.3 1.8E-05 4E-10 57.8 11.4 105 150-258 6-122 (126)
192 PRK15412 thiol:disulfide inter 98.3 8E-06 1.7E-10 65.8 10.6 90 36-130 67-177 (185)
193 KOG0914 Thioredoxin-like prote 98.3 7.8E-07 1.7E-11 71.1 3.8 67 36-105 143-216 (265)
194 TIGR02661 MauD methylamine deh 98.3 7.6E-06 1.7E-10 66.2 9.7 84 165-253 73-177 (189)
195 PLN02399 phospholipid hydroper 98.3 1E-05 2.2E-10 67.4 10.5 90 165-256 98-235 (236)
196 cd02958 UAS UAS family; UAS is 98.3 1.6E-05 3.4E-10 58.8 10.5 92 35-129 15-111 (114)
197 PF08534 Redoxin: Redoxin; In 98.2 5.8E-06 1.3E-10 63.8 8.2 77 165-243 27-136 (146)
198 PLN02412 probable glutathione 98.2 6.3E-06 1.4E-10 65.3 8.4 91 165-257 28-166 (167)
199 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 8.2E-06 1.8E-10 60.9 8.6 80 36-123 19-120 (123)
200 cd02966 TlpA_like_family TlpA- 98.2 1.2E-05 2.5E-10 58.6 9.2 75 37-113 19-115 (116)
201 PF13192 Thioredoxin_3: Thiore 98.2 7.5E-06 1.6E-10 55.9 7.3 71 172-252 4-76 (76)
202 cd02964 TryX_like_family Trypa 98.2 1.5E-05 3.2E-10 60.6 9.1 67 37-105 17-109 (132)
203 COG0526 TrxA Thiol-disulfide i 98.2 8E-06 1.7E-10 59.4 7.4 66 166-233 32-102 (127)
204 cd03009 TryX_like_TryX_NRX Try 98.2 1.2E-05 2.6E-10 60.8 8.5 68 37-106 18-110 (131)
205 cd03008 TryX_like_RdCVF Trypar 98.2 1.4E-05 3E-10 61.6 8.7 68 36-105 24-122 (146)
206 cd02969 PRX_like1 Peroxiredoxi 98.1 2.6E-05 5.6E-10 61.9 10.1 89 165-257 24-154 (171)
207 PTZ00056 glutathione peroxidas 98.1 7.4E-06 1.6E-10 66.8 7.0 44 165-209 38-81 (199)
208 PF01216 Calsequestrin: Calseq 98.1 1.1E-05 2.5E-10 69.0 8.1 108 148-259 34-148 (383)
209 KOG2603 Oligosaccharyltransfer 98.1 4.5E-05 9.8E-10 64.5 11.2 115 146-260 38-171 (331)
210 TIGR02540 gpx7 putative glutat 98.1 1.9E-05 4.1E-10 61.6 8.3 42 166-208 22-63 (153)
211 PLN02919 haloacid dehalogenase 98.1 2.2E-05 4.7E-10 79.0 10.8 93 36-130 419-537 (1057)
212 TIGR02200 GlrX_actino Glutared 98.1 1.1E-05 2.3E-10 54.9 5.9 68 170-252 2-76 (77)
213 PRK13728 conjugal transfer pro 98.1 5.3E-05 1.1E-09 60.2 10.3 86 41-130 73-172 (181)
214 cd01659 TRX_superfamily Thiore 98.1 1.8E-05 3.8E-10 50.8 6.5 58 170-230 1-63 (69)
215 TIGR02196 GlrX_YruB Glutaredox 98.0 1.4E-05 3E-10 53.6 5.8 67 170-252 2-74 (74)
216 cd02967 mauD Methylamine utili 98.0 2E-05 4.4E-10 57.9 6.9 62 36-98 20-82 (114)
217 smart00594 UAS UAS domain. 98.0 7.4E-05 1.6E-09 55.9 9.7 89 34-125 24-121 (122)
218 PF13728 TraF: F plasmid trans 98.0 7.3E-05 1.6E-09 61.6 10.4 80 166-250 120-213 (215)
219 PRK11200 grxA glutaredoxin 1; 98.0 4.2E-05 9.1E-10 53.3 7.4 75 169-256 2-84 (85)
220 cd03012 TlpA_like_DipZ_like Tl 98.0 6.8E-05 1.5E-09 56.3 9.1 77 36-114 22-124 (126)
221 PF02114 Phosducin: Phosducin; 97.9 2.5E-05 5.4E-10 66.2 6.5 110 13-128 121-237 (265)
222 TIGR01626 ytfJ_HI0045 conserve 97.9 6.5E-05 1.4E-09 60.0 8.3 84 166-250 59-175 (184)
223 PTZ00256 glutathione peroxidas 97.9 0.00021 4.6E-09 57.4 11.1 43 166-209 40-83 (183)
224 cd02981 PDI_b_family Protein D 97.9 7.1E-05 1.5E-09 53.4 7.5 88 157-254 9-97 (97)
225 KOG0911 Glutaredoxin-related p 97.9 0.00013 2.9E-09 59.0 9.5 172 36-231 16-203 (227)
226 cd03072 PDI_b'_ERp44 PDIb' fam 97.8 0.00017 3.8E-09 52.9 9.1 101 150-256 1-109 (111)
227 KOG2501 Thioredoxin, nucleored 97.8 1.9E-05 4.1E-10 60.6 4.0 69 165-233 32-129 (157)
228 COG2143 Thioredoxin-related pr 97.8 0.00023 5E-09 54.2 9.7 88 163-253 39-147 (182)
229 PTZ00056 glutathione peroxidas 97.8 0.00029 6.2E-09 57.4 10.4 92 37-130 39-179 (199)
230 cd02969 PRX_like1 Peroxiredoxi 97.8 0.00053 1.1E-08 54.4 11.8 97 36-134 24-157 (171)
231 TIGR02739 TraF type-F conjugat 97.8 0.00036 7.9E-09 58.7 11.0 85 166-255 150-248 (256)
232 KOG1672 ATP binding protein [P 97.8 0.0001 2.2E-09 58.1 7.2 83 148-234 66-151 (211)
233 cd02983 P5_C P5 family, C-term 97.7 0.00073 1.6E-08 51.1 11.1 106 149-257 3-117 (130)
234 PLN02412 probable glutathione 97.7 0.00024 5.2E-09 56.2 8.5 42 36-77 28-71 (167)
235 PRK13703 conjugal pilus assemb 97.7 0.00057 1.2E-08 57.2 11.0 86 166-254 143-240 (248)
236 PF06110 DUF953: Eukaryotic pr 97.7 0.00019 4.1E-09 53.1 7.2 74 156-231 6-100 (119)
237 PF08534 Redoxin: Redoxin; In 97.7 0.00023 4.9E-09 54.8 8.1 80 36-117 27-136 (146)
238 cd00340 GSH_Peroxidase Glutath 97.7 9E-05 2E-09 57.7 5.8 42 166-209 22-63 (152)
239 cd03017 PRX_BCP Peroxiredoxin 97.7 0.00015 3.2E-09 55.3 6.9 82 166-249 23-137 (140)
240 TIGR02180 GRX_euk Glutaredoxin 97.7 8E-05 1.7E-09 51.5 4.7 56 170-231 1-63 (84)
241 PF00578 AhpC-TSA: AhpC/TSA fa 97.6 0.00015 3.2E-09 54.0 6.2 46 165-211 24-70 (124)
242 TIGR02661 MauD methylamine deh 97.6 0.0012 2.7E-08 53.3 11.9 91 36-130 73-180 (189)
243 PLN02399 phospholipid hydroper 97.6 0.00078 1.7E-08 56.2 10.7 92 37-130 99-235 (236)
244 PF14595 Thioredoxin_9: Thiore 97.6 0.00011 2.4E-09 55.5 4.9 73 155-230 30-107 (129)
245 cd03073 PDI_b'_ERp72_ERp57 PDI 97.6 0.00048 1E-08 50.6 8.1 96 152-254 3-110 (111)
246 KOG0913 Thiol-disulfide isomer 97.6 1.9E-05 4.1E-10 64.1 0.6 85 38-129 40-126 (248)
247 cd02981 PDI_b_family Protein D 97.6 0.00041 9E-09 49.3 7.4 84 33-127 13-96 (97)
248 PF13899 Thioredoxin_7: Thiore 97.6 0.00016 3.4E-09 50.0 5.0 64 34-103 14-81 (82)
249 PF13728 TraF: F plasmid trans 97.6 0.00075 1.6E-08 55.6 9.6 82 37-123 120-212 (215)
250 cd02991 UAS_ETEA UAS family, E 97.5 0.00085 1.8E-08 49.6 8.6 92 35-130 15-114 (116)
251 cd02991 UAS_ETEA UAS family, E 97.5 0.00074 1.6E-08 50.0 8.2 91 163-256 14-114 (116)
252 KOG2603 Oligosaccharyltransfer 97.5 0.0014 3.1E-08 55.6 10.3 115 14-133 37-170 (331)
253 COG0526 TrxA Thiol-disulfide i 97.5 0.0009 2E-08 48.3 8.3 64 37-104 32-99 (127)
254 cd01659 TRX_superfamily Thiore 97.5 0.00077 1.7E-08 42.8 7.1 59 41-105 1-63 (69)
255 TIGR02540 gpx7 putative glutat 97.4 0.0018 3.8E-08 50.4 10.1 41 37-77 22-64 (153)
256 KOG3425 Uncharacterized conser 97.4 0.0013 2.8E-08 47.9 8.1 72 156-229 13-104 (128)
257 cd03015 PRX_Typ2cys Peroxiredo 97.4 0.0015 3.2E-08 51.9 9.5 90 166-257 29-159 (173)
258 PF13192 Thioredoxin_3: Thiore 97.4 0.0018 3.8E-08 44.0 8.5 70 44-126 5-76 (76)
259 TIGR02739 TraF type-F conjugat 97.3 0.0019 4.2E-08 54.3 9.6 91 38-130 151-249 (256)
260 KOG1672 ATP binding protein [P 97.3 0.00035 7.6E-09 55.2 4.7 70 35-110 82-152 (211)
261 PF07912 ERp29_N: ERp29, N-ter 97.3 0.0017 3.7E-08 47.6 7.9 104 19-128 6-118 (126)
262 TIGR01626 ytfJ_HI0045 conserve 97.3 0.002 4.4E-08 51.5 8.6 85 37-125 59-176 (184)
263 KOG2501 Thioredoxin, nucleored 97.3 0.00087 1.9E-08 51.6 6.2 68 37-105 33-126 (157)
264 TIGR02183 GRXA Glutaredoxin, G 97.3 0.00087 1.9E-08 46.8 5.8 76 169-257 1-84 (86)
265 PRK13703 conjugal pilus assemb 97.3 0.0026 5.7E-08 53.2 9.6 92 38-131 144-243 (248)
266 cd02968 SCO SCO (an acronym fo 97.3 0.00082 1.8E-08 51.3 6.2 46 165-210 21-69 (142)
267 PF00578 AhpC-TSA: AhpC/TSA fa 97.2 0.0018 3.8E-08 48.1 7.6 70 36-107 24-120 (124)
268 COG4232 Thiol:disulfide interc 97.2 0.0016 3.4E-08 60.2 8.5 95 31-128 466-567 (569)
269 KOG3170 Conserved phosducin-li 97.2 0.0051 1.1E-07 49.0 10.0 104 146-253 89-199 (240)
270 KOG0911 Glutaredoxin-related p 97.2 0.00024 5.2E-09 57.5 2.5 74 164-242 15-90 (227)
271 PRK09437 bcp thioredoxin-depen 97.2 0.0015 3.2E-08 50.8 6.8 45 165-210 29-74 (154)
272 TIGR02196 GlrX_YruB Glutaredox 97.1 0.0037 8E-08 41.5 7.8 70 41-125 2-73 (74)
273 cd03067 PDI_b_PDIR_N PDIb fami 97.1 0.0023 4.9E-08 45.1 6.6 94 154-253 8-110 (112)
274 cd02970 PRX_like2 Peroxiredoxi 97.1 0.0019 4.1E-08 49.6 6.8 45 166-211 23-68 (149)
275 cd02976 NrdH NrdH-redoxin (Nrd 97.1 0.0014 3E-08 43.6 5.3 65 170-250 2-72 (73)
276 KOG3171 Conserved phosducin-li 97.1 0.0019 4E-08 51.9 6.6 104 148-254 138-250 (273)
277 KOG3414 Component of the U4/U6 97.1 0.0045 9.8E-08 45.4 7.8 77 155-233 11-90 (142)
278 cd00340 GSH_Peroxidase Glutath 97.0 0.0048 1E-07 47.9 8.4 40 37-77 22-63 (152)
279 PF03190 Thioredox_DsbH: Prote 97.0 0.0014 3.1E-08 51.1 5.1 78 151-231 23-114 (163)
280 cd02960 AGR Anterior Gradient 97.0 0.0032 6.8E-08 47.4 6.7 68 34-107 20-91 (130)
281 PTZ00256 glutathione peroxidas 96.9 0.0094 2E-07 47.8 9.4 39 39-77 43-83 (183)
282 PRK10606 btuE putative glutath 96.9 0.0021 4.6E-08 51.5 5.3 42 166-209 25-66 (183)
283 cd03015 PRX_Typ2cys Peroxiredo 96.9 0.013 2.9E-07 46.4 10.0 90 37-128 29-156 (173)
284 cd03018 PRX_AhpE_like Peroxire 96.8 0.0029 6.3E-08 48.7 5.7 43 167-210 29-72 (149)
285 PRK10877 protein disulfide iso 96.8 0.0049 1.1E-07 51.5 7.3 82 164-254 105-230 (232)
286 PRK00522 tpx lipid hydroperoxi 96.8 0.015 3.3E-07 45.9 9.6 55 37-92 44-100 (167)
287 cd03014 PRX_Atyp2cys Peroxired 96.7 0.0038 8.3E-08 47.8 5.5 41 166-209 26-67 (143)
288 PF05768 DUF836: Glutaredoxin- 96.7 0.0043 9.2E-08 42.7 5.0 78 170-252 2-81 (81)
289 TIGR03137 AhpC peroxiredoxin. 96.7 0.0035 7.7E-08 50.5 5.2 43 166-209 31-74 (187)
290 PRK00522 tpx lipid hydroperoxi 96.7 0.0044 9.4E-08 49.0 5.6 42 166-210 44-86 (167)
291 cd03017 PRX_BCP Peroxiredoxin 96.6 0.012 2.7E-07 44.6 7.9 43 37-79 23-68 (140)
292 TIGR02190 GlrX-dom Glutaredoxi 96.6 0.0067 1.4E-07 41.5 5.7 56 166-231 6-66 (79)
293 KOG3414 Component of the U4/U6 96.6 0.037 8E-07 40.7 9.5 94 35-133 21-124 (142)
294 TIGR03143 AhpF_homolog putativ 96.6 0.031 6.7E-07 52.9 11.8 97 158-258 357-457 (555)
295 cd02971 PRX_family Peroxiredox 96.6 0.0049 1.1E-07 46.8 5.4 45 165-210 21-66 (140)
296 TIGR02180 GRX_euk Glutaredoxin 96.6 0.0075 1.6E-07 41.4 5.7 55 41-98 1-58 (84)
297 COG2143 Thioredoxin-related pr 96.5 0.052 1.1E-06 41.7 10.3 97 33-131 38-151 (182)
298 cd03014 PRX_Atyp2cys Peroxired 96.5 0.0094 2E-07 45.5 6.6 60 37-98 26-87 (143)
299 PF00462 Glutaredoxin: Glutare 96.5 0.0045 9.6E-08 39.8 4.0 49 170-226 1-55 (60)
300 PRK13190 putative peroxiredoxi 96.5 0.012 2.5E-07 48.1 7.3 90 166-256 27-155 (202)
301 PRK10329 glutaredoxin-like pro 96.5 0.016 3.4E-07 39.9 6.8 71 170-256 3-78 (81)
302 TIGR03137 AhpC peroxiredoxin. 96.5 0.035 7.5E-07 44.7 9.8 90 37-128 31-155 (187)
303 TIGR02200 GlrX_actino Glutared 96.5 0.019 4.1E-07 38.5 7.1 68 41-125 2-75 (77)
304 cd02970 PRX_like2 Peroxiredoxi 96.4 0.021 4.5E-07 43.7 8.2 55 37-91 23-80 (149)
305 cd03419 GRX_GRXh_1_2_like Glut 96.4 0.0059 1.3E-07 41.8 4.3 54 170-231 2-62 (82)
306 cd03029 GRX_hybridPRX5 Glutare 96.3 0.015 3.1E-07 38.9 5.9 64 170-251 3-71 (72)
307 cd03069 PDI_b_ERp57 PDIb famil 96.3 0.024 5.2E-07 41.0 7.4 91 155-254 8-103 (104)
308 PF07449 HyaE: Hydrogenase-1 e 96.3 0.0072 1.6E-07 43.7 4.4 91 149-244 10-104 (107)
309 PRK11200 grxA glutaredoxin 1; 96.3 0.033 7.1E-07 38.5 7.5 78 40-129 2-83 (85)
310 KOG3170 Conserved phosducin-li 96.3 0.016 3.5E-07 46.2 6.4 102 18-127 92-199 (240)
311 PF02966 DIM1: Mitosis protein 96.2 0.049 1.1E-06 40.6 8.5 76 155-233 8-87 (133)
312 cd03069 PDI_b_ERp57 PDIb famil 96.2 0.029 6.4E-07 40.5 7.2 83 34-127 15-102 (104)
313 cd03066 PDI_b_Calsequestrin_mi 96.2 0.055 1.2E-06 38.9 8.6 96 150-254 2-100 (102)
314 PRK15317 alkyl hydroperoxide r 96.1 0.028 6.1E-07 52.7 8.7 79 39-128 118-197 (517)
315 cd02066 GRX_family Glutaredoxi 96.1 0.012 2.7E-07 38.6 4.5 52 170-231 2-59 (72)
316 cd03020 DsbA_DsbC_DsbG DsbA fa 96.1 0.046 9.9E-07 44.4 8.6 26 165-190 76-101 (197)
317 PRK10606 btuE putative glutath 96.0 0.15 3.3E-06 40.9 11.3 59 37-98 25-94 (183)
318 PF02966 DIM1: Mitosis protein 96.0 0.17 3.7E-06 37.8 10.3 91 35-131 18-119 (133)
319 PRK15000 peroxidase; Provision 96.0 0.06 1.3E-06 43.9 8.9 91 37-129 34-162 (200)
320 PF11009 DUF2847: Protein of u 96.0 0.026 5.7E-07 40.6 5.9 91 154-247 6-104 (105)
321 cd03018 PRX_AhpE_like Peroxire 96.0 0.057 1.2E-06 41.4 8.4 44 36-79 27-73 (149)
322 PRK09437 bcp thioredoxin-depen 95.9 0.083 1.8E-06 40.9 9.3 43 37-79 30-75 (154)
323 PRK13190 putative peroxiredoxi 95.9 0.062 1.4E-06 43.8 8.6 86 43-130 34-155 (202)
324 PRK10382 alkyl hydroperoxide r 95.8 0.021 4.6E-07 46.0 5.5 88 166-254 31-155 (187)
325 cd03066 PDI_b_Calsequestrin_mi 95.8 0.076 1.7E-06 38.1 7.8 81 36-127 18-99 (102)
326 cd02968 SCO SCO (an acronym fo 95.8 0.055 1.2E-06 41.0 7.5 43 36-78 21-69 (142)
327 TIGR02189 GlrX-like_plant Glut 95.7 0.018 3.9E-07 41.2 4.4 56 168-233 8-72 (99)
328 PHA03050 glutaredoxin; Provisi 95.7 0.027 5.9E-07 41.0 5.0 58 168-232 13-79 (108)
329 TIGR02181 GRX_bact Glutaredoxi 95.6 0.015 3.2E-07 39.6 3.3 52 170-231 1-58 (79)
330 PRK10382 alkyl hydroperoxide r 95.6 0.23 4.9E-06 40.0 10.6 91 38-129 32-156 (187)
331 PRK11657 dsbG disulfide isomer 95.5 0.06 1.3E-06 45.5 7.4 28 165-192 116-143 (251)
332 TIGR03140 AhpF alkyl hydropero 95.5 0.081 1.8E-06 49.6 9.0 110 2-128 88-198 (515)
333 KOG3425 Uncharacterized conser 95.5 0.016 3.5E-07 42.3 3.3 75 27-102 15-103 (128)
334 TIGR02194 GlrX_NrdH Glutaredox 95.5 0.021 4.5E-07 38.2 3.7 64 171-249 2-70 (72)
335 cd03027 GRX_DEP Glutaredoxin ( 95.5 0.027 5.9E-07 37.7 4.2 53 170-232 3-61 (73)
336 cd02971 PRX_family Peroxiredox 95.4 0.11 2.3E-06 39.3 7.9 44 36-79 21-67 (140)
337 PRK15000 peroxidase; Provision 95.4 0.037 8E-07 45.1 5.5 88 165-254 33-161 (200)
338 cd03418 GRX_GRXb_1_3_like Glut 95.4 0.035 7.5E-07 37.2 4.5 52 170-231 2-60 (75)
339 cd03074 PDI_b'_Calsequestrin_C 95.2 0.54 1.2E-05 33.8 10.0 88 38-129 21-120 (120)
340 PF06110 DUF953: Eukaryotic pr 95.1 0.14 3.1E-06 37.8 7.4 69 35-105 17-99 (119)
341 cd03068 PDI_b_ERp72 PDIb famil 95.0 0.19 4.1E-06 36.5 7.7 96 151-254 3-107 (107)
342 cd02976 NrdH NrdH-redoxin (Nrd 95.0 0.22 4.8E-06 32.6 7.5 66 41-124 2-72 (73)
343 PTZ00137 2-Cys peroxiredoxin; 94.9 0.38 8.3E-06 40.8 10.4 90 38-129 99-225 (261)
344 cd03023 DsbA_Com1_like DsbA fa 94.9 0.074 1.6E-06 40.7 5.7 40 165-207 4-43 (154)
345 PF00837 T4_deiodinase: Iodoth 94.9 0.39 8.5E-06 39.8 10.0 62 146-210 80-144 (237)
346 cd03016 PRX_1cys Peroxiredoxin 94.8 0.28 6E-06 40.0 9.1 88 41-129 30-154 (203)
347 PRK10638 glutaredoxin 3; Provi 94.6 0.059 1.3E-06 37.0 4.0 52 170-231 4-61 (83)
348 PTZ00137 2-Cys peroxiredoxin; 94.6 0.08 1.7E-06 44.9 5.5 88 166-254 98-224 (261)
349 PF13462 Thioredoxin_4: Thiore 94.5 0.17 3.6E-06 39.2 7.0 44 165-208 11-54 (162)
350 PRK10877 protein disulfide iso 94.5 0.5 1.1E-05 39.4 10.1 82 36-127 106-229 (232)
351 TIGR02183 GRXA Glutaredoxin, G 94.5 0.26 5.6E-06 34.2 7.1 77 41-129 2-82 (86)
352 PF05768 DUF836: Glutaredoxin- 94.5 0.2 4.4E-06 34.3 6.4 78 41-126 2-81 (81)
353 PF14595 Thioredoxin_9: Thiore 94.4 0.093 2E-06 39.5 5.1 63 37-105 41-107 (129)
354 PRK13189 peroxiredoxin; Provis 94.4 0.31 6.7E-06 40.4 8.6 87 41-129 40-163 (222)
355 KOG3171 Conserved phosducin-li 94.4 0.12 2.7E-06 41.7 5.8 92 8-106 129-222 (273)
356 cd03016 PRX_1cys Peroxiredoxin 94.3 0.075 1.6E-06 43.4 4.7 42 168-210 28-69 (203)
357 TIGR00365 monothiol glutaredox 94.3 0.077 1.7E-06 37.8 4.2 46 176-231 25-76 (97)
358 cd03028 GRX_PICOT_like Glutare 94.3 0.089 1.9E-06 36.8 4.5 46 176-231 21-72 (90)
359 KOG1752 Glutaredoxin and relat 94.3 0.091 2E-06 37.9 4.5 59 166-232 12-77 (104)
360 COG0695 GrxC Glutaredoxin and 94.3 0.1 2.2E-06 35.7 4.6 49 170-226 3-59 (80)
361 PRK13191 putative peroxiredoxi 94.3 0.088 1.9E-06 43.4 5.0 88 166-254 33-160 (215)
362 PTZ00253 tryparedoxin peroxida 94.2 0.11 2.3E-06 42.3 5.4 44 166-210 36-80 (199)
363 PRK13599 putative peroxiredoxi 94.1 0.37 8.1E-06 39.7 8.5 86 41-128 33-155 (215)
364 PRK11657 dsbG disulfide isomer 94.0 0.73 1.6E-05 38.9 10.1 86 36-126 116-249 (251)
365 PRK13599 putative peroxiredoxi 93.9 0.11 2.3E-06 42.9 4.8 88 166-254 28-155 (215)
366 PRK13191 putative peroxiredoxi 93.8 0.48 1E-05 39.1 8.4 89 38-128 34-160 (215)
367 PRK13189 peroxiredoxin; Provis 93.7 0.12 2.7E-06 42.8 5.0 89 166-255 35-163 (222)
368 cd03020 DsbA_DsbC_DsbG DsbA fa 93.7 0.66 1.4E-05 37.5 9.2 79 36-125 76-197 (197)
369 PF00462 Glutaredoxin: Glutare 93.6 0.27 5.9E-06 31.3 5.4 51 41-98 1-53 (60)
370 PF03190 Thioredox_DsbH: Prote 93.6 0.27 5.8E-06 38.5 6.2 73 30-107 30-114 (163)
371 cd03019 DsbA_DsbA DsbA family, 93.5 0.15 3.3E-06 40.2 5.1 43 165-209 14-56 (178)
372 cd03074 PDI_b'_Calsequestrin_C 93.5 1.7 3.7E-05 31.3 9.5 104 150-254 3-119 (120)
373 PF07449 HyaE: Hydrogenase-1 e 93.3 0.071 1.5E-06 38.6 2.5 66 35-105 24-92 (107)
374 PRK10824 glutaredoxin-4; Provi 93.2 0.12 2.7E-06 38.0 3.6 48 176-233 28-81 (115)
375 PTZ00253 tryparedoxin peroxida 93.1 0.95 2.1E-05 36.7 9.1 90 37-128 36-163 (199)
376 cd03068 PDI_b_ERp72 PDIb famil 92.9 0.53 1.1E-05 34.1 6.6 79 38-127 20-106 (107)
377 cd02972 DsbA_family DsbA famil 92.7 0.26 5.7E-06 34.1 4.8 37 170-208 1-37 (98)
378 TIGR02190 GlrX-dom Glutaredoxi 92.6 0.71 1.5E-05 31.3 6.6 53 39-98 8-61 (79)
379 cd02974 AhpF_NTD_N Alkyl hydro 92.3 2.9 6.3E-05 29.5 10.2 74 166-253 18-92 (94)
380 cd03419 GRX_GRXh_1_2_like Glut 91.5 0.68 1.5E-05 31.3 5.6 53 41-98 2-57 (82)
381 PRK10329 glutaredoxin-like pro 91.4 2.3 4.9E-05 29.0 8.1 74 41-129 3-77 (81)
382 PF00837 T4_deiodinase: Iodoth 91.2 2 4.4E-05 35.7 8.8 54 18-71 83-137 (237)
383 PRK12759 bifunctional gluaredo 91.1 0.37 8.1E-06 43.8 5.0 49 170-226 4-66 (410)
384 cd02066 GRX_family Glutaredoxi 91.0 0.83 1.8E-05 29.5 5.5 51 41-98 2-54 (72)
385 PF13743 Thioredoxin_5: Thiore 91.0 1.4 3.1E-05 35.0 7.7 33 42-74 1-34 (176)
386 cd02972 DsbA_family DsbA famil 90.2 1.3 2.8E-05 30.4 6.2 60 41-102 1-90 (98)
387 TIGR02194 GlrX_NrdH Glutaredox 90.1 1.9 4.2E-05 28.4 6.7 65 42-123 2-70 (72)
388 PRK10954 periplasmic protein d 89.2 0.58 1.3E-05 38.2 4.2 41 166-208 37-80 (207)
389 cd03071 PDI_b'_NRX PDIb' famil 88.8 5.5 0.00012 28.7 8.2 88 38-129 15-115 (116)
390 COG3634 AhpF Alkyl hydroperoxi 88.4 18 0.00039 32.2 13.0 166 49-256 31-199 (520)
391 cd02978 KaiB_like KaiB-like fa 87.8 2.5 5.5E-05 28.2 5.7 59 41-103 4-64 (72)
392 COG1225 Bcp Peroxiredoxin [Pos 87.7 2.1 4.6E-05 33.3 6.1 59 38-98 31-92 (157)
393 cd03027 GRX_DEP Glutaredoxin ( 87.3 3.6 7.7E-05 27.1 6.5 55 41-104 3-59 (73)
394 KOG2640 Thioredoxin [Function 87.0 0.27 5.9E-06 42.1 0.9 85 166-256 76-163 (319)
395 cd03029 GRX_hybridPRX5 Glutare 86.6 3.5 7.7E-05 27.0 6.1 68 41-125 3-71 (72)
396 cd03418 GRX_GRXb_1_3_like Glut 85.0 4.9 0.00011 26.4 6.3 55 41-104 2-59 (75)
397 TIGR02654 circ_KaiB circadian 84.9 6.2 0.00013 27.4 6.6 59 41-103 6-66 (87)
398 PF13743 Thioredoxin_5: Thiore 83.7 2.5 5.4E-05 33.6 5.0 38 172-211 2-39 (176)
399 PF11009 DUF2847: Protein of u 83.6 9.3 0.0002 27.6 7.3 68 37-105 19-88 (105)
400 TIGR02181 GRX_bact Glutaredoxi 83.3 4.2 9.1E-05 27.2 5.4 50 42-98 2-53 (79)
401 PRK09301 circadian clock prote 83.3 7.5 0.00016 27.9 6.6 70 40-116 8-79 (103)
402 PF07700 HNOB: Heme NO binding 82.0 15 0.00032 28.9 8.8 65 5-78 104-170 (171)
403 KOG2640 Thioredoxin [Function 81.6 0.88 1.9E-05 39.1 1.7 87 37-130 76-163 (319)
404 PF13462 Thioredoxin_4: Thiore 81.2 5.2 0.00011 30.7 5.9 45 35-79 10-57 (162)
405 cd03023 DsbA_Com1_like DsbA fa 81.0 4.1 9E-05 30.8 5.3 39 37-76 5-44 (154)
406 cd03019 DsbA_DsbA DsbA family, 80.2 3.8 8.3E-05 32.0 4.9 42 36-77 14-56 (178)
407 cd03013 PRX5_like Peroxiredoxi 79.9 4.1 8.9E-05 31.6 4.9 45 166-211 29-76 (155)
408 cd03031 GRX_GRX_like Glutaredo 79.8 3.4 7.5E-05 31.8 4.3 49 170-226 2-66 (147)
409 cd02977 ArsC_family Arsenate R 79.8 2.6 5.6E-05 30.2 3.5 78 171-256 2-88 (105)
410 TIGR02189 GlrX-like_plant Glut 78.4 7.6 0.00016 27.6 5.5 52 40-98 9-65 (99)
411 cd03013 PRX5_like Peroxiredoxi 77.0 6.6 0.00014 30.4 5.3 61 37-98 29-95 (155)
412 cd03040 GST_N_mPGES2 GST_N fam 76.8 12 0.00026 24.7 6.0 73 170-256 2-77 (77)
413 COG4545 Glutaredoxin-related p 74.6 3.2 6.9E-05 27.8 2.4 21 171-191 5-25 (85)
414 COG0695 GrxC Glutaredoxin and 74.2 15 0.00032 25.0 5.8 51 41-98 3-57 (80)
415 cd03035 ArsC_Yffb Arsenate Red 72.6 4.1 8.9E-05 29.3 2.9 33 171-211 2-34 (105)
416 PF07689 KaiB: KaiB domain; I 72.1 4.5 9.8E-05 27.8 2.8 53 43-99 2-56 (82)
417 PHA03075 glutaredoxin-like pro 70.4 8.7 0.00019 28.1 4.0 29 167-195 2-30 (123)
418 PF02630 SCO1-SenC: SCO1/SenC; 70.0 17 0.00038 28.6 6.2 47 165-211 51-99 (174)
419 PRK10638 glutaredoxin 3; Provi 70.0 20 0.00043 24.2 5.8 51 41-98 4-56 (83)
420 PF06053 DUF929: Domain of unk 69.6 24 0.00053 29.7 7.1 70 149-229 45-114 (249)
421 PHA03050 glutaredoxin; Provisi 69.4 11 0.00024 27.3 4.5 55 40-98 14-73 (108)
422 cd03070 PDI_b_ERp44 PDIb famil 69.0 37 0.0008 23.8 8.9 69 166-243 17-85 (91)
423 cd03036 ArsC_like Arsenate Red 68.0 5.9 0.00013 28.8 2.9 77 171-255 2-88 (111)
424 PF13417 GST_N_3: Glutathione 67.9 23 0.0005 23.3 5.6 70 172-257 1-73 (75)
425 cd02974 AhpF_NTD_N Alkyl hydro 67.6 40 0.00087 23.7 9.0 75 37-128 18-93 (94)
426 PRK01655 spxA transcriptional 66.4 7.9 0.00017 29.1 3.4 34 170-211 2-35 (131)
427 cd03041 GST_N_2GST_N GST_N fam 64.1 28 0.00062 23.0 5.5 68 171-254 3-76 (77)
428 COG2761 FrnE Predicted dithiol 63.5 20 0.00043 29.7 5.3 44 83-133 174-217 (225)
429 COG3019 Predicted metal-bindin 63.0 28 0.00061 26.4 5.6 73 40-128 27-103 (149)
430 PRK12559 transcriptional regul 62.9 10 0.00022 28.6 3.4 34 170-211 2-35 (131)
431 TIGR00365 monothiol glutaredox 62.8 33 0.00072 24.1 5.9 45 47-98 25-71 (97)
432 COG1331 Highly conserved prote 61.1 47 0.001 32.1 8.0 80 149-231 27-120 (667)
433 TIGR01617 arsC_related transcr 60.6 9.5 0.00021 27.9 2.8 33 171-211 2-34 (117)
434 TIGR02742 TrbC_Ftype type-F co 59.6 27 0.00059 26.2 5.1 52 204-255 55-115 (130)
435 cd03032 ArsC_Spx Arsenate Redu 59.2 13 0.00028 27.1 3.4 34 170-211 2-35 (115)
436 PF01323 DSBA: DSBA-like thior 58.8 31 0.00068 27.1 5.9 39 170-209 2-40 (193)
437 PRK10954 periplasmic protein d 57.5 17 0.00038 29.5 4.2 41 37-77 37-81 (207)
438 KOG1752 Glutaredoxin and relat 57.0 61 0.0013 23.3 6.4 52 40-98 15-71 (104)
439 cd03028 GRX_PICOT_like Glutare 56.8 38 0.00083 23.3 5.3 45 47-98 21-67 (90)
440 COG1999 Uncharacterized protei 55.6 97 0.0021 25.3 8.2 69 27-98 57-134 (207)
441 cd03025 DsbA_FrnE_like DsbA fa 55.0 18 0.00038 28.7 3.8 27 170-196 3-29 (193)
442 PF09673 TrbC_Ftype: Type-F co 53.8 31 0.00067 25.2 4.6 45 183-229 36-80 (113)
443 KOG2507 Ubiquitin regulatory p 52.2 1.2E+02 0.0026 27.7 8.5 95 32-129 13-111 (506)
444 COG1225 Bcp Peroxiredoxin [Pos 52.1 42 0.00091 26.1 5.2 44 166-210 30-74 (157)
445 PRK13344 spxA transcriptional 51.8 20 0.00042 27.0 3.3 34 170-211 2-35 (132)
446 cd03033 ArsC_15kD Arsenate Red 47.6 27 0.00059 25.5 3.4 34 170-211 2-35 (113)
447 cd02978 KaiB_like KaiB-like fa 47.2 84 0.0018 21.0 5.5 57 169-226 3-61 (72)
448 COG1651 DsbG Protein-disulfide 45.5 62 0.0014 26.8 5.8 43 166-209 84-126 (244)
449 PF02630 SCO1-SenC: SCO1/SenC; 45.0 58 0.0013 25.6 5.2 53 37-89 52-109 (174)
450 cd03060 GST_N_Omega_like GST_N 44.9 28 0.0006 22.5 2.9 50 171-226 2-54 (71)
451 COG3411 Ferredoxin [Energy pro 43.2 53 0.0012 21.3 3.7 31 221-257 17-47 (64)
452 COG1999 Uncharacterized protei 41.6 92 0.002 25.4 6.0 47 165-211 66-115 (207)
453 PF08806 Sep15_SelM: Sep15/Sel 41.5 59 0.0013 22.0 4.1 34 221-255 42-76 (78)
454 PF04592 SelP_N: Selenoprotein 40.1 72 0.0016 26.6 5.0 59 150-210 12-72 (238)
455 PRK12759 bifunctional gluaredo 39.9 88 0.0019 28.5 6.2 51 41-98 4-64 (410)
456 cd00570 GST_N_family Glutathio 38.7 92 0.002 19.0 5.8 49 172-226 3-55 (71)
457 cd03031 GRX_GRX_like Glutaredo 37.8 1.2E+02 0.0026 23.3 5.8 51 41-98 2-64 (147)
458 COG2761 FrnE Predicted dithiol 37.7 77 0.0017 26.3 4.9 40 214-259 178-217 (225)
459 COG1651 DsbG Protein-disulfide 37.3 62 0.0014 26.8 4.6 38 83-128 205-242 (244)
460 PF05176 ATP-synt_10: ATP10 pr 36.8 2.6E+02 0.0057 23.6 9.4 117 7-126 95-247 (252)
461 cd03045 GST_N_Delta_Epsilon GS 36.7 43 0.00093 21.6 2.8 50 171-226 2-57 (74)
462 PF09822 ABC_transp_aux: ABC-t 36.4 2.6E+02 0.0057 23.5 10.8 38 53-93 47-88 (271)
463 cd02990 UAS_FAF1 UAS family, F 35.6 2E+02 0.0042 21.8 10.6 90 164-256 19-134 (136)
464 PF01323 DSBA: DSBA-like thior 35.3 59 0.0013 25.5 3.9 36 83-125 157-192 (193)
465 COG1393 ArsC Arsenate reductas 35.3 52 0.0011 24.2 3.3 23 170-192 3-25 (117)
466 cd03059 GST_N_SspA GST_N famil 34.7 26 0.00056 22.6 1.5 67 171-253 2-71 (73)
467 cd03051 GST_N_GTT2_like GST_N 34.3 42 0.00091 21.4 2.5 50 171-226 2-57 (74)
468 cd03024 DsbA_FrnE DsbA family, 34.2 59 0.0013 25.8 3.8 36 83-125 165-200 (201)
469 COG3531 Predicted protein-disu 34.1 1E+02 0.0022 25.1 4.8 43 83-129 164-209 (212)
470 PF09673 TrbC_Ftype: Type-F co 33.4 1.9E+02 0.0041 21.0 6.6 46 49-104 35-80 (113)
471 PF13778 DUF4174: Domain of un 32.1 2E+02 0.0044 21.0 9.0 88 40-128 12-111 (118)
472 PF00255 GSHPx: Glutathione pe 31.0 1.9E+02 0.0041 20.9 5.5 45 165-211 20-64 (108)
473 cd03034 ArsC_ArsC Arsenate Red 30.9 56 0.0012 23.6 2.9 34 171-212 2-35 (112)
474 TIGR02742 TrbC_Ftype type-F co 30.8 1.6E+02 0.0034 22.2 5.3 43 83-127 61-113 (130)
475 TIGR00014 arsC arsenate reduct 29.9 60 0.0013 23.6 2.9 33 171-211 2-34 (114)
476 PF11317 DUF3119: Protein of u 28.7 1.3E+02 0.0027 22.2 4.2 37 218-256 80-116 (116)
477 PF08599 Nbs1_C: DNA damage re 28.6 25 0.00055 22.6 0.6 44 217-266 14-57 (65)
478 COG0821 gcpE 1-hydroxy-2-methy 28.6 1.6E+02 0.0035 26.0 5.6 86 169-258 257-354 (361)
479 cd03037 GST_N_GRX2 GST_N famil 27.3 57 0.0012 20.9 2.2 19 172-190 3-21 (71)
480 COG2077 Tpx Peroxiredoxin [Pos 27.2 2.2E+02 0.0047 22.1 5.4 60 34-94 42-102 (158)
481 PF07700 HNOB: Heme NO binding 25.9 1.6E+02 0.0034 23.0 4.8 44 166-210 127-170 (171)
482 cd03055 GST_N_Omega GST_N fami 24.8 1.1E+02 0.0024 20.7 3.4 52 169-226 18-72 (89)
483 KOG2507 Ubiquitin regulatory p 24.7 5.6E+02 0.012 23.6 8.7 85 165-253 17-109 (506)
484 PRK10853 putative reductase; P 22.4 1.1E+02 0.0023 22.5 3.1 34 170-211 2-35 (118)
485 PF04551 GcpE: GcpE protein; 22.3 1.3E+02 0.0028 26.9 3.9 75 178-254 271-358 (359)
486 cd03062 TRX_Fd_Sucrase TRX-lik 22.0 1.6E+02 0.0035 20.6 3.8 68 176-257 14-85 (97)
487 PRK09301 circadian clock prote 21.9 2.8E+02 0.0061 19.9 4.9 74 167-244 6-81 (103)
488 PRK10026 arsenate reductase; P 21.8 1.3E+02 0.0027 23.0 3.4 22 170-191 4-25 (141)
489 COG3531 Predicted protein-disu 21.3 84 0.0018 25.5 2.4 27 169-195 3-29 (212)
490 TIGR02654 circ_KaiB circadian 21.2 2.9E+02 0.0064 19.1 4.8 73 168-244 4-78 (87)
491 KOG0855 Alkyl hydroperoxide re 20.7 2.5E+02 0.0054 22.3 4.7 74 26-104 79-155 (211)
492 COG0278 Glutaredoxin-related p 20.6 1.7E+02 0.0037 21.0 3.5 54 40-98 16-72 (105)
493 COG3019 Predicted metal-bindin 20.1 1.2E+02 0.0027 23.1 2.9 73 168-255 26-104 (149)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=255.75 Aligned_cols=241 Identities=39% Similarity=0.668 Sum_probs=202.4
Q ss_pred eeeeecCCceEEEEEeCc--cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCC-ceEEEEecCCcc
Q 023747 31 LKVSQIDTLDMVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK-NTVVTAFDNKAI 107 (278)
Q Consensus 31 ~~~~~~~~~~~v~F~~~~--~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~-Ptl~~~~~~~~~ 107 (278)
...+++.-..-++||..- ...+.+.+.+.++|++|++++.|+.+|.... +...+.||+.... |.. .+.....+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~---~~~~~~~Gl~~~~~~~~-~v~~~~~~ 323 (493)
T KOG0190|consen 248 AKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESF---ARVLEFFGLEEEQLPIR-AVILNEDG 323 (493)
T ss_pred ceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHh---hHHHHhcCcccccCCee-EEeecccc
Confidence 344444433444455433 4778999999999999999999999988877 7899999999333 623 55555566
Q ss_pred eeecCCCC-CChHHHHHHHHHHhcCcccccccCCCCCCCCC-CCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHH
Q 023747 108 SKFLLESD-LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTN-ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTS 185 (278)
Q Consensus 108 ~~~~~~g~-~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~-~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~ 185 (278)
.+|.+... .+.+.|..|+.+++.|++.|+++|+++|+++. .+|+.+.++||++++.+.++.++|.||||||+||+.+.
T Consensus 324 ~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~la 403 (493)
T KOG0190|consen 324 SKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALA 403 (493)
T ss_pred ccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhh
Confidence 78888776 78889999999999999999999999999877 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcccCCCCchh
Q 023747 186 KQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDE 265 (278)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~ 265 (278)
|.|++||..+++..++.++++|++.|+++...+.++|||++|+.|.+..++.|.|.++.++|..||.++.+.......++
T Consensus 404 P~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~~~~~~~~ee 483 (493)
T KOG0190|consen 404 PIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSATESATPKKEE 483 (493)
T ss_pred hHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCCccccccchh
Confidence 99999999999988999999999999999999999999999999998888999999999999999999987322222222
Q ss_pred hhhhhccCCCCCC
Q 023747 266 QWKEKDQAPKDEL 278 (278)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (278)
.. ++.++|||
T Consensus 484 ~~---~~~~~dEL 493 (493)
T KOG0190|consen 484 KK---DESVKDEL 493 (493)
T ss_pred cc---cccccccC
Confidence 11 11788887
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=99.97 E-value=2.5e-29 Score=231.66 Aligned_cols=217 Identities=25% Similarity=0.496 Sum_probs=187.0
Q ss_pred eeeecCCceEEEEEeCccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchh-HHHHcCCCCCCceEEEEecCCcceee
Q 023747 32 KVSQIDTLDMVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKP-FLTLFGLEESKNTVVTAFDNKAISKF 110 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~-l~~~~~i~~~~Ptl~~~~~~~~~~~~ 110 (278)
.....+... ++|.....+.+.+.+.|+++|+++++++.|+.+|++.. +. +++.+|+.++ |++ .+.+.. .+|
T Consensus 244 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~---~~~~~~~~gi~~~-P~~-~i~~~~--~~y 315 (477)
T PTZ00102 244 RYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQF---GSHAKEHLLIEEF-PGL-AYQSPA--GRY 315 (477)
T ss_pred HHhcCCccE-EEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechhc---chhHHHhcCcccC-ceE-EEEcCC--ccc
Confidence 444455443 33433335567899999999999999999999999998 65 8999999999 998 666533 256
Q ss_pred cCCCC----CChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHH
Q 023747 111 LLESD----LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSK 186 (278)
Q Consensus 111 ~~~g~----~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~ 186 (278)
.+.+. .+.++|.+|++++++|++.++++|+++|......+..+++++|++.+.+.+++++|.|||+||++|+.+.|
T Consensus 316 ~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p 395 (477)
T PTZ00102 316 LLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEP 395 (477)
T ss_pred CCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHH
Confidence 66554 78999999999999999999999999998878889999999999998888999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCC--CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 187 QIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~vd~~~~~~--~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
.|++++..+++...+.++.+|++.++. .++++.++||+++|++|+++ ++.|.|.++.++|.+||.+++..
T Consensus 396 ~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~-~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 396 VYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERT-PIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred HHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcc-eeEecCcCCHHHHHHHHHHcCCC
Confidence 999999999875579999999998854 48999999999999988765 56899999999999999999874
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.97 E-value=1.1e-28 Score=226.42 Aligned_cols=216 Identities=34% Similarity=0.642 Sum_probs=190.9
Q ss_pred ceEEEEEeC--c-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCC--CCCceEEEEecCCcceeecC
Q 023747 39 LDMVYVFAK--A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLE--ESKNTVVTAFDNKAISKFLL 112 (278)
Q Consensus 39 ~~~v~F~~~--~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~--~~~Ptl~~~~~~~~~~~~~~ 112 (278)
+.++.|+.. . .+|+.+...|.++|++++| .+.|+.+|+... +.+++.+|+. .+ |++ .+++.....+|.+
T Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~---~~~~~~~~~~~~~~-P~~-vi~~~~~~~~y~~ 309 (462)
T TIGR01130 235 PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDF---GRELEYFGLKAEKF-PAV-AIQDLEGNKKYPM 309 (462)
T ss_pred CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHh---HHHHHHcCCCccCC-ceE-EEEeCCcccccCC
Confidence 455555543 3 4589999999999999997 899999999988 8999999999 56 999 7777654357777
Q ss_pred CC-CCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHH
Q 023747 113 ES-DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKL 191 (278)
Q Consensus 113 ~g-~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~ 191 (278)
.+ ..+.+.|.+|++++++|++++.++|+++|....+.|..++..+|.+.+.+.+++++|.||++||++|+.+.|.++++
T Consensus 310 ~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~ 389 (462)
T TIGR01130 310 DQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEEL 389 (462)
T ss_pred CcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHH
Confidence 76 69999999999999999999999999999877788999999999999988899999999999999999999999999
Q ss_pred HHHhcCC-CceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcccC
Q 023747 192 AKHFKGL-DNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 259 (278)
Q Consensus 192 a~~~~~~-~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 259 (278)
++.+++. .++.|+.+|++.+++..+++.++|++++|++|....+..|.|..+.++|.+||.+++..+.
T Consensus 390 ~~~~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 390 AEKYKDAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred HHHhhcCCCcEEEEEEECCCCccCCCCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 9999873 3699999999998775599999999999999887556789999999999999999886543
No 4
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-27 Score=214.19 Aligned_cols=216 Identities=25% Similarity=0.417 Sum_probs=187.9
Q ss_pred ceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCC
Q 023747 27 SLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 27 ~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
............+++|.||++| ++|+++.|.|.++++.+++.+.++.|||+.+ ..+|++|+|.++ ||+ .+|.++
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~---~~~~~~y~i~gf-Ptl-~~f~~~ 111 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH---KDLCEKYGIQGF-PTL-KVFRPG 111 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh---HHHHHhcCCccC-cEE-EEEcCC
Confidence 3445566677888999999999 9999999999999999999999999999999 999999999999 999 777766
Q ss_pred cceeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHH
Q 023747 106 AISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTS 185 (278)
Q Consensus 106 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~ 185 (278)
.....|.|..+.+.+.+|+...+....... ....+..++..+|...+...+..++|.||+|||++|+.+.
T Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~ 181 (383)
T KOG0191|consen 112 -KKPIDYSGPRNAESLAEFLIKELEPSVKKL---------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLA 181 (383)
T ss_pred -CceeeccCcccHHHHHHHHHHhhccccccc---------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcC
Confidence 567778999999999999999876543322 1114899999999999989999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhccc
Q 023747 186 KQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 258 (278)
|.|++++..+.....+.++.+|++.. .+ .++++..+|++++|++|.+ ....|.|.++.+.++.|+....+..
T Consensus 182 ~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 182 PEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc-ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999997544899999999855 44 5889999999999999887 2336889999999999999998874
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.91 E-value=3.8e-23 Score=170.76 Aligned_cols=187 Identities=14% Similarity=0.153 Sum_probs=143.3
Q ss_pred CceEEEEEe---Cc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC
Q 023747 38 TLDMVYVFA---KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 112 (278)
Q Consensus 38 ~~~~v~F~~---~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~ 112 (278)
...++.|++ +| ++|+.+.|.+++++..+.+ .+.++.+|.+.. ++++++|+|.++ ||+ .+|++|......+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~---~~l~~~~~V~~~-Pt~-~~f~~g~~~~~~~ 94 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED---KEEAEKYGVERV-PTT-IILEEGKDGGIRY 94 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc---HHHHHHcCCCcc-CEE-EEEeCCeeeEEEE
Confidence 345677888 89 9999999999999999964 244566666577 899999999999 999 7776665433356
Q ss_pred CCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCc-EEEEEECCCChhHHHHHHHHHHH
Q 023747 113 ESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKL 191 (278)
Q Consensus 113 ~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~ 191 (278)
.|..+.+++.+|++.+++-+ . ....++.++.+.+- ..+++ .++.||++||++|+.+.+.++++
T Consensus 95 ~G~~~~~~l~~~i~~~~~~~--~-------------~~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~l 158 (215)
T TIGR02187 95 TGIPAGYEFAALIEDIVRVS--Q-------------GEPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHKF 158 (215)
T ss_pred eecCCHHHHHHHHHHHHHhc--C-------------CCCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHHH
Confidence 88888999999999886311 0 01233444444433 33444 45569999999999999999999
Q ss_pred HHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 023747 192 AKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 192 a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
+.... ++.+..+|.+.+ ++ .+|+|.++||++++.+|. .+.|..+.+.|.+||.+
T Consensus 159 ~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 159 ALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-----EEECCCCHHHHHHHHHh
Confidence 98743 688999999988 55 589999999999987653 38899999999999875
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=2.9e-20 Score=137.08 Aligned_cols=101 Identities=14% Similarity=0.253 Sum_probs=90.1
Q ss_pred CCCeEEEcccchHHHh--hcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC--CCCCcCC
Q 023747 147 NANVQIVVGKTFDDLV--LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP--KLQVEEY 221 (278)
Q Consensus 147 ~~~v~~l~~~~~~~~i--~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~--~~~i~~~ 221 (278)
...|..+++.+|++.+ .+.++.++|.||||||++|+.+.|.++++|+.+++ .+.|++|||+.+ +++ +|+|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 4569999999999873 47789999999999999999999999999999987 699999999988 453 7999999
Q ss_pred CeEEEEeCCCccCceEecCCCCHHHHHHHH
Q 023747 222 PTLLFYPAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 222 Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
||+++|++|+. +..|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~--~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG--PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc--ceEEeCCCCHHHHHhhC
Confidence 99999998876 45899999999999874
No 7
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.3e-20 Score=138.99 Aligned_cols=104 Identities=25% Similarity=0.531 Sum_probs=96.5
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCCCcCCCeEEE
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLF 226 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~-~~~i~~~Ptl~~ 226 (278)
.+...+..+|++.+.+++.+++|.|||+||+||+.+.|.+++++.++.+ .+.|+++|.+++ +++ +|+|..+||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 3566788999999999999999999999999999999999999999988 899999999999 774 999999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 227 YPAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
|++|++.. ++.|..+.+.|..||++.++
T Consensus 122 fknGe~~d--~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVD--RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEee--eecccCCHHHHHHHHHHHhc
Confidence 99999886 78999999999999998764
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.82 E-value=1.3e-19 Score=131.98 Aligned_cols=101 Identities=30% Similarity=0.648 Sum_probs=93.9
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 227 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f 227 (278)
|..++.++|++.+.+.++.++|+||++||++|+.+.|.|.++++.+.+ ++.|+.+|++.+ ++ .+|++.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 567899999999977789999999999999999999999999999997 799999999988 55 59999999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHHHHH
Q 023747 228 PAGDKANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 228 ~~g~~~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
++|+... +|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~~--~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK--RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE--EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE--EEECCCCHHHHHHHHHcC
Confidence 9998875 899999999999999986
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.81 E-value=1.3e-19 Score=132.64 Aligned_cols=100 Identities=25% Similarity=0.551 Sum_probs=89.2
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
.+..++.++|++.+.+.+++++|.||++||++|+.+.|.|++++..+.+ .+.|+.+||+.+ ++ .+++|.++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 4778899999999988888999999999999999999999999999976 699999999998 56 4899999999999
Q ss_pred EeCCCccCceEecCCCC-HHHHHHHH
Q 023747 227 YPAGDKANPIKVSARSS-SKNIAAFI 251 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~-~~~l~~~i 251 (278)
|++|++. ..+|.|..+ .++|.+||
T Consensus 80 ~~~g~~~-~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASK-YHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCC-ceEccCCCCCHHHHHhhC
Confidence 9988433 458999887 99999885
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.81 E-value=1.8e-19 Score=131.16 Aligned_cols=97 Identities=23% Similarity=0.455 Sum_probs=87.4
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
.+..++.++|++.+ ..+++++|.||++||++|+.+.|.|.++++.+++ .+.|+.+||+++ .+ .+++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 47788999999988 4568999999999999999999999999999987 699999999988 55 5899999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHH
Q 023747 227 YPAGDKANPIKVSARSSSKNIAAF 250 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~~~~l~~~ 250 (278)
|++|+... .|.|..+.++|.+|
T Consensus 79 ~~~g~~~~--~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPE--KYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcc--cCCCCCCHHHHHhh
Confidence 99987653 79999999999887
No 11
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.81 E-value=3.7e-19 Score=129.92 Aligned_cols=102 Identities=50% Similarity=0.929 Sum_probs=91.7
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeEEEEe
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYP 228 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl~~f~ 228 (278)
|..+++++|++.+.+.+++++|.||++||++|+.+.|.+.++++.+++..++.++.+|++.+++ ..+++.++|++++|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFP 81 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEc
Confidence 7889999999999888899999999999999999999999999999874479999999998866 477899999999999
Q ss_pred CCCccCceEecCCCCHHHHHHHH
Q 023747 229 AGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 229 ~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
+|++.....|.|..+.++|.+||
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 88744356899999999999986
No 12
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=144.07 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=137.8
Q ss_pred eeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
+..+....|+|.||+|| ++|+++.|.|.++...+++ .++++++||+.. +.++.+|||.|| ||| .++.++
T Consensus 38 kdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f---~aiAnefgiqGY-PTI-k~~kgd-- 110 (468)
T KOG4277|consen 38 KDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF---PAIANEFGIQGY-PTI-KFFKGD-- 110 (468)
T ss_pred hhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc---hhhHhhhccCCC-ceE-EEecCC--
Confidence 44567789999999999 9999999999999999986 399999999999 999999999999 999 888776
Q ss_pred eeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcc-cchHHHhhcCCCcEEEEEECCCChhHHHHHH
Q 023747 108 SKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSK 186 (278)
Q Consensus 108 ~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~-~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~ 186 (278)
..|.|+|+++.+.|++|.....+. .+..++. ......+...+++.+|+|.+...+ +..
T Consensus 111 ~a~dYRG~R~Kd~iieFAhR~a~a-----------------iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d 169 (468)
T KOG4277|consen 111 HAIDYRGGREKDAIIEFAHRCAAA-----------------IIEPINENQIEFEHLQARHQPFFVFFGTGEGP----LFD 169 (468)
T ss_pred eeeecCCCccHHHHHHHHHhcccc-----------------eeeecChhHHHHHHHhhccCceEEEEeCCCCc----HHH
Confidence 577789999999999999987432 2344444 223333456788999999865422 233
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCC-C-CCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHh
Q 023747 187 QIEKLAKHFKGLDNLVIAKIDASANEH-P-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~vd~~~~~~-~-~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
.|...|... +.+++.-...++. + ....+..|++.+|++... ....+...++|..||++--
T Consensus 170 ~fidAASe~-----~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf----~i~de~dd~dLseWinRER 231 (468)
T KOG4277|consen 170 AFIDAASEK-----FSVARFFSASEEVAPEENDAKEMPAVAVFKDETF----EIEDEGDDEDLSEWINRER 231 (468)
T ss_pred HHHHHhhhh-----eeeeeeeccccccCCcccchhhccceEEEcccee----EEEecCchhHHHHHHhHhh
Confidence 444444443 4444444333333 4 446788999999998642 2233556789999998643
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.80 E-value=3.6e-19 Score=131.12 Aligned_cols=101 Identities=22% Similarity=0.433 Sum_probs=88.4
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC----CceEEEEEeCCCC-CC-CCCCCcCCC
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL----DNLVIAKIDASAN-EH-PKLQVEEYP 222 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~----~~~~~~~vd~~~~-~~-~~~~i~~~P 222 (278)
.|..+++++|++.+ +.++.++|.||+|||++|+.+.|.|+++++.+++. .++.++.+||+.+ ++ .+++|.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47889999999977 66789999999999999999999999999987532 1589999999998 55 589999999
Q ss_pred eEEEEeCCCccCceEecCCCCHHHHHHHH
Q 023747 223 TLLFYPAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 223 tl~~f~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
|+++|++|+.. ...|.|.++.++|.+||
T Consensus 81 tl~~~~~g~~~-~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM-KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc-ceecCCCCCHHHHHhhC
Confidence 99999998754 35899999999999986
No 14
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.8e-18 Score=151.85 Aligned_cols=210 Identities=12% Similarity=0.129 Sum_probs=152.7
Q ss_pred CcccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHcC
Q 023747 15 KSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFG 90 (278)
Q Consensus 15 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~~ 90 (278)
..+.+..++.+||.. .+..+..++|.||+|| +||++++|.|+++|..+++ .+..++|||+.+ ..+|.+|+
T Consensus 23 ~~~~Vl~Lt~dnf~~---~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~ 96 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKE---TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYE 96 (493)
T ss_pred cccceEEEecccHHH---HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhc
Confidence 455567777766654 4556777899999999 9999999999999999986 599999999999 89999999
Q ss_pred CCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEc-ccchHHHhhcCCCcE
Q 023747 91 LEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV-GKTFDDLVLNSHKDV 169 (278)
Q Consensus 91 i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~-~~~~~~~i~~~~~~~ 169 (278)
|.|| ||+ .+|.+|.. ...|.|.++.+.|..|+.+...+ .+..+. .+....++ .....+
T Consensus 97 v~gy-PTl-kiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gP-----------------a~~~l~~~~~a~~~l-~~~~~~ 155 (493)
T KOG0190|consen 97 VRGY-PTL-KIFRNGRS-AQDYNGPREADGIVKWLKKQSGP-----------------ASKTLKTVDEAEEFL-SKKDVV 155 (493)
T ss_pred CCCC-CeE-EEEecCCc-ceeccCcccHHHHHHHHHhccCC-----------------CceecccHHHHHhhc-cCCceE
Confidence 9999 999 77776654 56679999999999999986422 234444 45666655 335566
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCC--CCcCCCeEEEEeCCCccCceEecCCCCHHHH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKL--QVEEYPTLLFYPAGDKANPIKVSARSSSKNI 247 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~--~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l 247 (278)
+|-|+...-+. ...+...+..+.+ ++.|+ +-.+..-..++ ...+.|.+++++..... .+.|.|..+.+.|
T Consensus 156 vig~F~d~~~~----~~~~~~~a~~l~~--d~~F~-~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~-~~~~~~~~~~~~l 227 (493)
T KOG0190|consen 156 VIGFFKDLESL----AESFFDAASKLRD--DYKFA-HTSDSDVAKKLELNTEGTFPIVLFKKFDEL-LVKYDGSFTPELL 227 (493)
T ss_pred EEEEecccccc----hHHHHHHHHhccc--cceee-ccCcHhHHhhccCCCCCcceEEeccccccc-hhhcccccCHHHH
Confidence 66666544222 1345566666666 68888 22222222333 33447778888766544 4567899999999
Q ss_pred HHHHHHHhcccC
Q 023747 248 AAFIKEQLKEKD 259 (278)
Q Consensus 248 ~~~i~~~~~~~~ 259 (278)
.+||..+.-+-.
T Consensus 228 ~~Fi~~~~~plv 239 (493)
T KOG0190|consen 228 KKFIQENSLPLV 239 (493)
T ss_pred HHHHHHhccccc
Confidence 999998876653
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=1.6e-18 Score=127.75 Aligned_cols=101 Identities=30% Similarity=0.511 Sum_probs=89.5
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC--C-CC-CCCCCcCCCeEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~--~-~~-~~~~i~~~Ptl~ 225 (278)
|..+++++|.+.+.+.+++++|.||++||++|+.+.|.+.++++.+.+ .+.++.+|++. + ++ .+++|.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678999999999988888999999999999999999999999999986 68999999998 4 45 489999999999
Q ss_pred EEeCCCc---cCceEecCCCCHHHHHHHHH
Q 023747 226 FYPAGDK---ANPIKVSARSSSKNIAAFIK 252 (278)
Q Consensus 226 ~f~~g~~---~~~~~~~g~~~~~~l~~~i~ 252 (278)
+|++|+. .....|.|..+.++|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9998862 12458999999999999983
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.77 E-value=2.2e-18 Score=128.03 Aligned_cols=103 Identities=11% Similarity=0.147 Sum_probs=92.4
Q ss_pred CCeEEEcccchHHHhhcCCCcEEEEEECCCChh--HH--HHHHHHHHHHHHh--cCCCceEEEEEeCCCC-CC-CCCCCc
Q 023747 148 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVT--CE--TTSKQIEKLAKHF--KGLDNLVIAKIDASAN-EH-PKLQVE 219 (278)
Q Consensus 148 ~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~~a~~~--~~~~~~~~~~vd~~~~-~~-~~~~i~ 219 (278)
..|..+|.+||++.+.+++.++++.||++||++ |+ .+.|.+.++|..+ .+ ++.|++||++++ ++ .+|+|.
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCCc
Confidence 468899999999999998999999999999977 99 8889999999998 54 799999999999 67 599999
Q ss_pred CCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHh
Q 023747 220 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 220 ~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
++||+++|++|+.+ .|.|.++.+.|.+||.+..
T Consensus 87 ~iPTl~lfk~G~~v---~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVI---EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEE---EeeCCCCHHHHHHHHHHHh
Confidence 99999999999843 5999999999999998764
No 17
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=6.1e-18 Score=123.30 Aligned_cols=99 Identities=29% Similarity=0.531 Sum_probs=89.4
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 227 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f 227 (278)
|..+++++|.+.+.+.+++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+ ++ .+++|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 678899999999887778899999999999999999999999999987 699999999988 55 58999999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHH
Q 023747 228 PAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 228 ~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
++|+.. ...|.|..+.++|.+|+
T Consensus 80 ~~~~~~-~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNS-PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcc-eeecCCCCCHHHHHHHh
Confidence 988443 56899999999999997
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.76 E-value=6.1e-18 Score=122.98 Aligned_cols=98 Identities=21% Similarity=0.444 Sum_probs=85.0
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
.|..++.++|++.+. + .++|.||++||++|+.+.|.|++++..++.. ++.++.+|++.+ .+ .+|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 478899999999773 2 3899999999999999999999999987643 599999999988 55 4899999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHHHH
Q 023747 227 YPAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
|++|+ . ..|.|..+.++|.+||++
T Consensus 78 ~~~g~-~--~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGV-F--RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCC-E--EEecCCCCHHHHHHHHhC
Confidence 98886 3 379999999999999864
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.76 E-value=1.4e-17 Score=122.80 Aligned_cols=104 Identities=24% Similarity=0.561 Sum_probs=93.0
Q ss_pred CCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE
Q 023747 148 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 148 ~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~ 225 (278)
..|..+++++|.+.+.+.+++++|.||++||++|..+.|.+++++..+.+ ++.++.+|++.+ .+ .+|++..+|+++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45888999999988877788999999999999999999999999999987 699999999988 55 589999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHHh
Q 023747 226 FYPAGDKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
+|++|+... ++.|..+.+.|..||.+++
T Consensus 81 ~~~~G~~~~--~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAA--TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEE--EecCCCCHHHHHHHHHHhc
Confidence 999887653 7889999999999998875
No 20
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.6e-18 Score=141.36 Aligned_cols=105 Identities=24% Similarity=0.542 Sum_probs=97.8
Q ss_pred CeEEEcccchHHHhhcC--CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeE
Q 023747 149 NVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL 224 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl 224 (278)
.+.++|..||...+... ..+++|+||+|||++|+.+.|.+++++..+++ ++.+++||||.. ++ ..++|.++||+
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 48999999999988654 45999999999999999999999999999999 899999999999 77 59999999999
Q ss_pred EEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 225 LFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 225 ~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
+.|++|..+. .|.|....+.|.+||.++++.
T Consensus 102 ~af~dGqpVd--gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVD--GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCcc--ccCCCCcHHHHHHHHHHhcCh
Confidence 9999999887 799999999999999999987
No 21
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.74 E-value=1.7e-17 Score=122.34 Aligned_cols=101 Identities=28% Similarity=0.631 Sum_probs=86.8
Q ss_pred CeEEEcccchHHHhh--cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCC--CCCCcCCC
Q 023747 149 NVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP--KLQVEEYP 222 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~--~~~i~~~P 222 (278)
.|..++.++|+.++. +.+++++|.||++||++|+.+.|.|.+++..+++. ++.++.||++.+ .++ .+++..+|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccchhhHHhhcCCCcCC
Confidence 478889999999885 35789999999999999999999999999999853 599999999973 443 48999999
Q ss_pred eEEEEeCCCccCceEecCC-CCHHHHHHHH
Q 023747 223 TLLFYPAGDKANPIKVSAR-SSSKNIAAFI 251 (278)
Q Consensus 223 tl~~f~~g~~~~~~~~~g~-~~~~~l~~~i 251 (278)
|+++|++|... ...|.|. ++.++|..||
T Consensus 81 ti~~f~~~~~~-~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQ-PIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCC-ceeccCCCCCHHHHHhhC
Confidence 99999887654 5689995 8999999986
No 22
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.74 E-value=1.2e-17 Score=123.13 Aligned_cols=103 Identities=8% Similarity=0.078 Sum_probs=88.7
Q ss_pred ccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHH-HHcCCCCC
Q 023747 17 CTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFL-TLFGLEES 94 (278)
Q Consensus 17 ~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~-~~~~i~~~ 94 (278)
..|+.++.+||...++..+.+.+++|.||++| ++|+.+.|.|+++|+.+++.+.|++|||+.+ ..+| ++|+|.++
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~---~~l~~~~~~I~~~ 85 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP---QGKCRKQKHFFYF 85 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC---hHHHHHhcCCccc
Confidence 34677888888888777889999999999999 9999999999999999999999999999998 8899 58999999
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
||| .+|.++. ....|.|.++.+.|..|+
T Consensus 86 -PTl-~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 -PVI-HLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred -CEE-EEEECCc-cceEEeCCCCHHHHHhhC
Confidence 999 5554443 245568999999998873
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.74 E-value=2.4e-17 Score=119.96 Aligned_cols=98 Identities=29% Similarity=0.583 Sum_probs=85.4
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKG-LDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~-~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
+..+++++|++.+.+ +.++|.||++||++|+.+.|.+.++++.+++ ...+.++.+|++.+ ++ .++++.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567899999998844 3599999999999999999999999999976 33699999999988 55 5899999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHH
Q 023747 227 YPAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
|++|+.. .+|.|..+.++|.+||
T Consensus 80 ~~~g~~~--~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKV--DKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCee--eEeeCCCCHHHHHhhC
Confidence 9988754 3899999999998885
No 24
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=2.8e-17 Score=120.05 Aligned_cols=101 Identities=38% Similarity=0.716 Sum_probs=88.9
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-C-CC-CCCCCcCCCeEEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-N-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~-~-~~-~~~~i~~~Ptl~~ 226 (278)
+..+++++|++.+.+.++.++|.||++||++|+.+.|.+..+++.++...++.++.+|++. + ++ .++++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678899999988777779999999999999999999999999999854479999999999 6 55 5899999999999
Q ss_pred EeCCCccCceEecCCCCHHHHHHHH
Q 023747 227 YPAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
|.+|+.. ...|.|..+.+.|.+||
T Consensus 82 ~~~~~~~-~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTE-PVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCC-ccccCCccCHHHHHhhC
Confidence 9887543 45899999999999985
No 25
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=2.8e-16 Score=145.02 Aligned_cols=221 Identities=15% Similarity=0.198 Sum_probs=156.8
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc---CceEEEEEeCCCcccchhHHHHcCCCCC
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLTLFGLEES 94 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~---~~v~f~~vd~~~~~~~~~l~~~~~i~~~ 94 (278)
++.++.++++.. .+.++.++|.||++| ++|+++.|.|.+++..+. +.+.|+.|||+.+ ..+|++|+|.++
T Consensus 34 v~~l~~~~f~~~---i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~---~~l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVLTDSTFDKF---ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE---MELAQEFGVRGY 107 (477)
T ss_pred cEEcchhhHHHH---HhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC---HHHHHhcCCCcc
Confidence 445555555443 345678999999999 999999999999998875 3599999999999 899999999999
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcCcccccccC--------------------CC-------------
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKS--------------------QP------------- 141 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s--------------------~~------------- 141 (278)
||+ .+++++... .|.|.++.+.|.+|+.+.+...+...-.. .+
T Consensus 108 -Pt~-~~~~~g~~~--~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~ 183 (477)
T PTZ00102 108 -PTI-KFFNKGNPV--NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADK 183 (477)
T ss_pred -cEE-EEEECCceE--EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHh
Confidence 999 777766433 56899999999999999765433221000 00
Q ss_pred --------------CC--------CC--------------------CCCCeEEEcccchHHHhhcCCCcEEEEEECCCCh
Q 023747 142 --------------IP--------DN--------------------TNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCV 179 (278)
Q Consensus 142 --------------~p--------~~--------------------~~~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~ 179 (278)
.+ .. ....+..++.+++.... ..+..++++++ .+.
T Consensus 184 ~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~ 260 (477)
T PTZ00102 184 HREHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYI-SSGKDLVWFCG--TTE 260 (477)
T ss_pred ccccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHh-cCCccEEEEec--CHH
Confidence 00 00 01123455555665544 33343333232 345
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--C-CCCCCcCCCeEEEEeCCCccCceEecC----CCCHHHHHHHHH
Q 023747 180 TCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H-PKLQVEEYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIK 252 (278)
Q Consensus 180 ~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g----~~~~~~l~~~i~ 252 (278)
....+.+.++++|+.+++ ++.|+.+|++... . ..+++..+|++++...+++ +.+.+ ..+.++|.+|++
T Consensus 261 ~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~---y~~~~~~~~~~~~~~l~~Fv~ 335 (477)
T PTZ00102 261 DYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGR---YLLPPAKESFDSVEALIEFFK 335 (477)
T ss_pred HHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCcc---cCCCccccccCCHHHHHHHHH
Confidence 566788999999999998 7999999999873 3 4789999999888763332 22333 368999999999
Q ss_pred HHhcc
Q 023747 253 EQLKE 257 (278)
Q Consensus 253 ~~~~~ 257 (278)
+....
T Consensus 336 ~~~~g 340 (477)
T PTZ00102 336 DVEAG 340 (477)
T ss_pred HHhCC
Confidence 88764
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.73 E-value=2.7e-17 Score=118.39 Aligned_cols=93 Identities=18% Similarity=0.467 Sum_probs=82.1
Q ss_pred cchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCc
Q 023747 156 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 232 (278)
Q Consensus 156 ~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~ 232 (278)
++|++.+.++ +++++|.||++||++|+.+.|.+.+++..+.+ .+.++.+|++.+ ++ .++++.++|++++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3677778655 78999999999999999999999999999987 699999999998 55 5899999999999998876
Q ss_pred cCceEecCCCCHHHHHHHHH
Q 023747 233 ANPIKVSARSSSKNIAAFIK 252 (278)
Q Consensus 233 ~~~~~~~g~~~~~~l~~~i~ 252 (278)
.. ++.|..+.+.|..||.
T Consensus 79 ~~--~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VD--GFQGAQPEEQLRQMLD 96 (96)
T ss_pred ee--eecCCCCHHHHHHHhC
Confidence 54 7999999999999873
No 27
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.73 E-value=2.4e-17 Score=119.73 Aligned_cols=100 Identities=40% Similarity=0.803 Sum_probs=88.9
Q ss_pred EcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCC
Q 023747 153 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAG 230 (278)
Q Consensus 153 l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g 230 (278)
|++++|++.+. .+++++|+||++||++|+.+.+.+.+++..+++.+++.++.+|++++ .+ .+|++.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46788999885 78899999999999999999999999999998765699999999988 55 58999999999999988
Q ss_pred CccCceEecCCCCHHHHHHHHHHHh
Q 023747 231 DKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 231 ~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
+. .+.|.|..+.+.|..||.+++
T Consensus 80 ~~--~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK--PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc--ceeecCCCCHHHHHHHHHhcC
Confidence 76 458999999999999998763
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.73 E-value=1.8e-17 Score=122.57 Aligned_cols=99 Identities=14% Similarity=0.344 Sum_probs=84.3
Q ss_pred EEcccchHHHhhc--CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEE
Q 023747 152 IVVGKTFDDLVLN--SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFY 227 (278)
Q Consensus 152 ~l~~~~~~~~i~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f 227 (278)
.++.++|.+.+.. .+++++|.||+|||++|+.+.|.+.++++.+.+. ++.++.+|++.+ .+ .+++|.++||+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 4567778765543 5789999999999999999999999999999753 589999999987 55 58999999999999
Q ss_pred eCCCccCceEecCCCCHHHHHHHHHH
Q 023747 228 PAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 228 ~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
++|+.. ..+.|..+.+.|.+||++
T Consensus 87 ~~g~~~--~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVT--FYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEE--EEecCCCCHHHHHHHHhc
Confidence 988653 267899999999999975
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.72 E-value=3.3e-17 Score=134.68 Aligned_cols=107 Identities=27% Similarity=0.553 Sum_probs=93.4
Q ss_pred CCCeEEEcccchHHHhhcC----CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcC
Q 023747 147 NANVQIVVGKTFDDLVLNS----HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEE 220 (278)
Q Consensus 147 ~~~v~~l~~~~~~~~i~~~----~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~ 220 (278)
...|..+++++|++.+... +++++|.||++||++|+.+.|.|+++++.+++ .+.++.+|++.+ ++ .+|+|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 4568999999999988643 57899999999999999999999999999987 699999999988 55 5899999
Q ss_pred CCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 221 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 221 ~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
+||+++|++|+... .+.|..+.++|.+|+.++...
T Consensus 107 ~PTl~~f~~G~~v~--~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 107 YPTLLLFDKGKMYQ--YEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCEEEEEECCEEEE--eeCCCCCHHHHHHHHHHHHHh
Confidence 99999999887542 346789999999999988753
No 30
>PHA02278 thioredoxin-like protein
Probab=99.72 E-value=2.9e-17 Score=119.14 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=77.5
Q ss_pred ccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CC-CCCCCcCCCeEEEEe
Q 023747 155 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EH-PKLQVEEYPTLLFYP 228 (278)
Q Consensus 155 ~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-----~~-~~~~i~~~Ptl~~f~ 228 (278)
.++|.+.+ ..++.++|.|||+||++|+.+.|.+++++..+.. ++.|+.+|++.+ ++ .+++|.++||+++|+
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 35677777 5689999999999999999999999999988654 467899999975 34 489999999999999
Q ss_pred CCCccCceEecCCCCHHHHHHH
Q 023747 229 AGDKANPIKVSARSSSKNIAAF 250 (278)
Q Consensus 229 ~g~~~~~~~~~g~~~~~~l~~~ 250 (278)
+|+.+. +..|..+.+.|.+|
T Consensus 81 ~G~~v~--~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVK--KYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEE--EEeCCCCHHHHHhh
Confidence 998775 78898888888775
No 31
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.72 E-value=3.3e-17 Score=120.24 Aligned_cols=98 Identities=19% Similarity=0.365 Sum_probs=79.4
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEEC--CCCh---hHHHHHHHHHHHHHHhcCCCceEEEEEeCC-----CC-CC-CCCC
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYT--PWCV---TCETTSKQIEKLAKHFKGLDNLVIAKIDAS-----AN-EH-PKLQ 217 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~-----~~-~~-~~~~ 217 (278)
+..|+..||+++| ..++.++|.||| |||+ +|+.+.|.+...+. .+.++.|||+ ++ ++ .+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 6789999999988 667889999999 8888 66665555554443 4899999995 33 56 4899
Q ss_pred Cc--CCCeEEEEeCCCccCceEecCC-CCHHHHHHHHHHH
Q 023747 218 VE--EYPTLLFYPAGDKANPIKVSAR-SSSKNIAAFIKEQ 254 (278)
Q Consensus 218 i~--~~Ptl~~f~~g~~~~~~~~~g~-~~~~~l~~~i~~~ 254 (278)
|+ ++|||++|++|....++.|.|. ++.++|++||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 9999999999863335689996 9999999999986
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.71 E-value=2.2e-17 Score=120.83 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=69.3
Q ss_pred ccchHHHhhc-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCC
Q 023747 155 GKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 155 ~~~~~~~i~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~ 231 (278)
.++|++.+.. .+++++|.|||+||++|+.+.|.+++++.++.+ .+.|++||++++ ++ .+|+|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567777764 577899999999999999999999999999986 589999999999 66 589999999999999998
Q ss_pred ccC
Q 023747 232 KAN 234 (278)
Q Consensus 232 ~~~ 234 (278)
.+.
T Consensus 80 ~v~ 82 (114)
T cd02954 80 HMK 82 (114)
T ss_pred EEE
Confidence 775
No 33
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.71 E-value=3.1e-16 Score=129.79 Aligned_cols=208 Identities=14% Similarity=0.159 Sum_probs=148.8
Q ss_pred eeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc-----CceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCC
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK-----GKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~-----~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
.......+++|.||+.| .-++.+.|.|++.|..++ +++.++.|||+.+ ..++++|.|..| ||+ .+|.+|
T Consensus 8 ~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---~~ia~ky~I~Ky-PTl-KvfrnG 82 (375)
T KOG0912|consen 8 SILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---DDIADKYHINKY-PTL-KVFRNG 82 (375)
T ss_pred HhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---hHHhhhhccccC-cee-eeeecc
Confidence 34455678999999999 788999999999999885 6799999999999 899999999999 999 888777
Q ss_pred cceeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEc-ccchHHHhhcCCCcEEEEEECCCChhHHHH
Q 023747 106 AISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETT 184 (278)
Q Consensus 106 ~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~-~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~ 184 (278)
......|+|.++.+.+.+|+++.++..+ .+.. -+.+........+.++.+|-....+.
T Consensus 83 ~~~~rEYRg~RsVeaL~efi~kq~s~~i-----------------~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspe---- 141 (375)
T KOG0912|consen 83 EMMKREYRGQRSVEALIEFIEKQLSDPI-----------------NEFESLDQLQNLDIPSKRTVIGYFPSKDSPE---- 141 (375)
T ss_pred chhhhhhccchhHHHHHHHHHHHhccHH-----------------HHHHhHHHHHhhhccccceEEEEeccCCCch----
Confidence 7777788999999999999999875432 2221 23344433224556666776555444
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCccCceEecCC-CCHHHHHHHHHHHhcccCC---
Q 023747 185 SKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKNIAAFIKEQLKEKDQ--- 260 (278)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~-~~~~~l~~~i~~~~~~~~~--- 260 (278)
...+.++|..++.+..+.++.-|.....- -.+.+ +++|+.+.......|.|. .+.+.+..||.+.|-+-.+
T Consensus 142 y~~~~kva~~lr~dc~f~V~~gD~~~~~~----~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 142 YDNLRKVASLLRDDCVFLVGFGDLLKPHE----PPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHHHhhccEEEeeccccccCCC----CCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence 34578899999886555555555443311 11222 455554444322268997 5679999999999988766
Q ss_pred -CCchhhhhhh
Q 023747 261 -SPKDEQWKEK 270 (278)
Q Consensus 261 -~~~~~~~~~~ 270 (278)
.+.+|+..+|
T Consensus 217 FeN~EELtEEG 227 (375)
T KOG0912|consen 217 FENAEELTEEG 227 (375)
T ss_pred hccHHHHhhcC
Confidence 5556666554
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.71 E-value=1.1e-16 Score=116.86 Aligned_cols=99 Identities=23% Similarity=0.505 Sum_probs=85.7
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC--C-CC-CCCCCcCCCeEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA--N-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~--~-~~-~~~~i~~~Ptl~ 225 (278)
|..+++.+|++.+ ..+++++|.||++||++|+.+.|.+.+++..+.....+.++.+|++. + .+ .++++.++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 6788899999987 44569999999999999999999999999999743369999999998 5 44 588999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHH
Q 023747 226 FYPAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
+|++|+.. ..|.|..+.+.+.+||
T Consensus 81 ~~~~g~~~--~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFV--EKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCee--EEeCCCCCHHHHHhhC
Confidence 99988754 3899999999999885
No 35
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.71 E-value=6.2e-17 Score=117.30 Aligned_cols=82 Identities=18% Similarity=0.387 Sum_probs=72.6
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CC-CC-CCCCCcCCCeEEEEeCCCccCceEecC
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA 240 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~-~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g 240 (278)
..+++++|.|||+||++|+.+.|.|+++++.+.+ +.++.+|++ .+ ++ .+|+|.++||+++|++| . ..+|.|
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~--~~~~~G 89 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P--RVRYNG 89 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c--eeEecC
Confidence 3588999999999999999999999999999974 789999988 55 55 58999999999999988 4 348999
Q ss_pred CCCHHHHHHHH
Q 023747 241 RSSSKNIAAFI 251 (278)
Q Consensus 241 ~~~~~~l~~~i 251 (278)
..+.+.|.+||
T Consensus 90 ~~~~~~l~~f~ 100 (100)
T cd02999 90 TRTLDSLAAFY 100 (100)
T ss_pred CCCHHHHHhhC
Confidence 99999999985
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=99.69 E-value=2.4e-16 Score=121.15 Aligned_cols=103 Identities=20% Similarity=0.518 Sum_probs=90.7
Q ss_pred CCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE
Q 023747 148 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 148 ~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~ 225 (278)
+.+..++..+|++.+ +.++.++|.||++||++|+.+.+.+.++++.+.+ ++.++.+|++.+ ++ .+|+|.++|+++
T Consensus 35 ~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 35 GEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 346678889999876 5689999999999999999999999999999887 699999999988 55 589999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHHh
Q 023747 226 FYPAGDKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
+|++|+.+. .+.|..+.+.|.+||++++
T Consensus 112 i~~~G~~v~--~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 112 IFKNGQVVD--MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEECCEEEE--EEcCCCCHHHHHHHHHHhC
Confidence 999887654 7889999999999998763
No 37
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.69 E-value=2.3e-16 Score=114.21 Aligned_cols=98 Identities=26% Similarity=0.604 Sum_probs=86.5
Q ss_pred cccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCC
Q 023747 154 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 154 ~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~ 231 (278)
+.++|.+.+.+.++.++|+||++||++|+.+.+.+.+++..+.+ ++.|+.+|++.+ .+ .++++..+|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 56788888877778999999999999999999999999999976 699999999988 44 589999999999999887
Q ss_pred ccCceEecCCCCHHHHHHHHHHHh
Q 023747 232 KANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 232 ~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
... .+.|..+.+.+.+||++++
T Consensus 80 ~~~--~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVD--RSVGALPKAALKQLINKNL 101 (101)
T ss_pred Eee--eecCCCCHHHHHHHHHhhC
Confidence 653 6788899999999998764
No 38
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.69 E-value=1.1e-15 Score=140.28 Aligned_cols=208 Identities=14% Similarity=0.167 Sum_probs=144.9
Q ss_pred cccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHcCCCCCC
Q 023747 20 ISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESK 95 (278)
Q Consensus 20 v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~~i~~~~ 95 (278)
+.++.+++...+ +.+++++|.||++| ++|+.+.|.|.++|+.+.+ .+.|+.|||+.+ ..+|++++|.++
T Consensus 4 ~~l~~~~~~~~i---~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~- 76 (462)
T TIGR01130 4 LVLTKDNFDDFI---KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE---KDLAQKYGVSGY- 76 (462)
T ss_pred eECCHHHHHHHH---hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc---HHHHHhCCCccc-
Confidence 445555555443 45678999999999 9999999999999998864 399999999999 899999999999
Q ss_pred ceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEc-ccchHHHhhcCCCcEEEEEE
Q 023747 96 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV-GKTFDDLVLNSHKDVLLEVY 174 (278)
Q Consensus 96 Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~-~~~~~~~i~~~~~~~~v~f~ 174 (278)
||+ .++.++......|.|.++.+++.+|+.+.+.. .+..++ .++++.++.. +...+|.|+
T Consensus 77 Pt~-~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~-----------------~~~~i~~~~~~~~~~~~-~~~~vi~~~ 137 (462)
T TIGR01130 77 PTL-KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGP-----------------AVKEIETVADLEAFLAD-DDVVVIGFF 137 (462)
T ss_pred cEE-EEEeCCccceeEecCCCCHHHHHHHHHHhcCC-----------------CceeecCHHHHHHHHhc-CCcEEEEEE
Confidence 999 66665543245669999999999999987632 245554 5778887744 666677776
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCcc-CceEecCCC--CHHHHHHHH
Q 023747 175 TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKA-NPIKVSARS--SSKNIAAFI 251 (278)
Q Consensus 175 ~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~-~~~~~~g~~--~~~~l~~~i 251 (278)
... -......+.++|..++. ...+.....+......++.. -|++.+|...... ..+.|.|.. +.++|..||
T Consensus 138 ~~~---~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi 211 (462)
T TIGR01130 138 KDL---DSELNDTFLSVAEKLRD--VYFFFAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFI 211 (462)
T ss_pred CCC---CcHHHHHHHHHHHHhhh--ccceEEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHH
Confidence 542 13556788999999986 33322222121112344433 3666666433222 123567765 568999999
Q ss_pred HHHhcccC
Q 023747 252 KEQLKEKD 259 (278)
Q Consensus 252 ~~~~~~~~ 259 (278)
+.+.-|..
T Consensus 212 ~~~~~p~v 219 (462)
T TIGR01130 212 RAESLPLV 219 (462)
T ss_pred HHcCCCce
Confidence 98776543
No 39
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.68 E-value=2.5e-16 Score=114.46 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=82.8
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCce
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 97 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Pt 97 (278)
++.++..+++..+ ..+++++|.||++| ++|+.+.|.|+++|+++++.+.|+.|||+++ +.+|++++|.++ ||
T Consensus 3 ~~~l~~~~f~~~v---~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-Pt 75 (101)
T cd03003 3 IVTLDRGDFDAAV---NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD---RMLCRSQGVNSY-PS 75 (101)
T ss_pred eEEcCHhhHHHHh---cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc---HHHHHHcCCCcc-CE
Confidence 3556666666544 45588999999999 9999999999999999999999999999999 899999999999 99
Q ss_pred EEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 98 VVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 98 l~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
+ .+|..|. ....|.|.++.++|.+|.
T Consensus 76 ~-~~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 76 L-YVFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred E-EEEcCCC-CcccCCCCCCHHHHHhhC
Confidence 9 6666553 355679999999998873
No 40
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.68 E-value=3.6e-16 Score=121.08 Aligned_cols=108 Identities=20% Similarity=0.375 Sum_probs=86.4
Q ss_pred CCCCCCCCCCCeEEEcccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC
Q 023747 139 SQPIPDNTNANVQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK 215 (278)
Q Consensus 139 s~~~p~~~~~~v~~l~~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~ 215 (278)
+++.+. ....+..++.++|++.+... ++.++|.||++||++|+.+.|.++++++.+.+. ++.|+.||++++ ++ .+
T Consensus 20 ~~~~~~-~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~ 97 (152)
T cd02962 20 PQPLYM-GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEK 97 (152)
T ss_pred CCCccC-CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHH
Confidence 344443 24678899999999988544 568999999999999999999999999999753 599999999998 56 47
Q ss_pred CCCcC------CCeEEEEeCCCccCceEecC-----------CCCHHHHHHH
Q 023747 216 LQVEE------YPTLLFYPAGDKANPIKVSA-----------RSSSKNIAAF 250 (278)
Q Consensus 216 ~~i~~------~Ptl~~f~~g~~~~~~~~~g-----------~~~~~~l~~~ 250 (278)
++|.+ +||+++|++|+.+. ++.| ..+.+++++.
T Consensus 98 ~~V~~~~~v~~~PT~ilf~~Gk~v~--r~~G~~~~~~~~~~~~~~~~~~~~~ 147 (152)
T cd02962 98 FRVSTSPLSKQLPTIILFQGGKEVA--RRPYYNDSKGRAVPFTFSKENVIRH 147 (152)
T ss_pred cCceecCCcCCCCEEEEEECCEEEE--EEeccccCccccccccccHHHHHHh
Confidence 88877 99999999998775 4443 3566666654
No 41
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.67 E-value=3.5e-16 Score=114.07 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=76.4
Q ss_pred ccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC----CC-CCCCCcCCCeEEEEe
Q 023747 155 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----EH-PKLQVEEYPTLLFYP 228 (278)
Q Consensus 155 ~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~----~~-~~~~i~~~Ptl~~f~ 228 (278)
.++|++.+.+. +++++|.||++||++|+.+.|.+.+++..+. ++.|+.||++++ ++ .+++|.++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46788888654 8899999999999999999999999999993 689999999887 23 488999999999999
Q ss_pred CCCccCceEecCCCCHHHHHHHHH
Q 023747 229 AGDKANPIKVSARSSSKNIAAFIK 252 (278)
Q Consensus 229 ~g~~~~~~~~~g~~~~~~l~~~i~ 252 (278)
+|+.+. ++.| ...+.|.+-+.
T Consensus 80 ~G~~v~--~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 80 DGEKIH--EEEG-IGPDELIGDVL 100 (103)
T ss_pred CCeEEE--EEeC-CCHHHHHHHHH
Confidence 988654 7777 44566666554
No 42
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.67 E-value=4.7e-16 Score=113.22 Aligned_cols=96 Identities=19% Similarity=0.394 Sum_probs=80.6
Q ss_pred EcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeEEEEeCCC
Q 023747 153 VVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 153 l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl~~f~~g~ 231 (278)
-+.++|.+.+ +.+++++|.|||+||++|+.+.|.+.+++..+.+. .+.|+.+|++..++ .+|+|.++||+++|++|+
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 3568888876 56889999999999999999999999999999742 48899999994455 599999999999999988
Q ss_pred ccCceEecCCCCHHHHHHHHHH
Q 023747 232 KANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 232 ~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
.+. +..| .+.+.+.++|.+
T Consensus 83 ~~~--~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVA--VIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE--EEec-CChHHHHHHHhh
Confidence 664 5566 488899988865
No 43
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.67 E-value=4.8e-16 Score=115.36 Aligned_cols=99 Identities=22% Similarity=0.416 Sum_probs=82.2
Q ss_pred CCeEEEcccchHHHhhcC--CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeE
Q 023747 148 ANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTL 224 (278)
Q Consensus 148 ~~v~~l~~~~~~~~i~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl 224 (278)
+.+..+++++|.+.+.+. ++.++|+||+|||++|+.+.|.+++++..+. ++.|++||++++++ .+++|.++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 458889999999998766 3899999999999999999999999999986 48999999998755 48999999999
Q ss_pred EEEeCCCccCceEecC-------CCCHHHHHHHH
Q 023747 225 LFYPAGDKANPIKVSA-------RSSSKNIAAFI 251 (278)
Q Consensus 225 ~~f~~g~~~~~~~~~g-------~~~~~~l~~~i 251 (278)
++|++|+.+. ++.| ..+.+.|.+|+
T Consensus 81 ~~f~~G~~v~--~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELID--NIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEE--EEecHHHhCCCCCCHHHHHHHh
Confidence 9999998765 4544 24455555554
No 44
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.67 E-value=6.2e-16 Score=112.40 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=83.7
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCC--ChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPW--CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~ 225 (278)
.-.++..||++.+ ..+...+|.||++| |++|..+.|.+.++++.+.+ .+.|+.+|++.+ ++ .+|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5578999999887 77889999999997 99999999999999999987 689999999999 66 599999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHH
Q 023747 226 FYPAGDKANPIKVSARSSSKNIA 248 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~ 248 (278)
+|++|+.+. ...|..+.+.+.
T Consensus 89 ~fkdGk~v~--~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVG--VLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEE--EEeCccCHHHHh
Confidence 999998765 678888877765
No 45
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.66 E-value=2.4e-16 Score=115.18 Aligned_cols=100 Identities=21% Similarity=0.209 Sum_probs=83.6
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCce
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 97 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Pt 97 (278)
++.+++.++...+. +.+++++|.||++| ++|+.+.|.|+++++++.+.+.|+.|||+.+ +.+|++++|.++ ||
T Consensus 3 v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~i~~~-Pt 76 (104)
T cd03004 3 VITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY---ESLCQQANIRAY-PT 76 (104)
T ss_pred ceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch---HHHHHHcCCCcc-cE
Confidence 34555666655443 35568999999999 9999999999999999998899999999999 899999999999 99
Q ss_pred EEEEecCCcceeecCCCCCC-hHHHHHHH
Q 023747 98 VVTAFDNKAISKFLLESDLT-PSNIEEFC 125 (278)
Q Consensus 98 l~~~~~~~~~~~~~~~g~~~-~~~i~~fi 125 (278)
+ .+|..++...+.|.|..+ .++|.+|+
T Consensus 77 ~-~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 I-RLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred E-EEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9 666665445677899886 99998885
No 46
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.66 E-value=8e-16 Score=138.47 Aligned_cols=105 Identities=25% Similarity=0.556 Sum_probs=91.1
Q ss_pred CCCeEEEcccchHHHhh--cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--C--CCCCCcC
Q 023747 147 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H--PKLQVEE 220 (278)
Q Consensus 147 ~~~v~~l~~~~~~~~i~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--~--~~~~i~~ 220 (278)
+..|..++.++|++.+. +.+++++|.||+|||++|+.+.|.|++++..+++. .+.|+.||++.+. + .+|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 45789999999999984 46889999999999999999999999999999763 4899999998763 3 3799999
Q ss_pred CCeEEEEeCCCccCceEec-CCCCHHHHHHHHHH
Q 023747 221 YPTLLFYPAGDKANPIKVS-ARSSSKNIAAFIKE 253 (278)
Q Consensus 221 ~Ptl~~f~~g~~~~~~~~~-g~~~~~~l~~~i~~ 253 (278)
+||+++|++|... ++.|. |.++.++|+.||+.
T Consensus 429 ~PTii~Fk~g~~~-~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 429 FPTILFFPKHSSR-PIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cceEEEEECCCCC-ceeCCCCCCCHHHHHHHHHh
Confidence 9999999998644 66898 58999999999975
No 47
>PLN02309 5'-adenylylsulfate reductase
Probab=99.66 E-value=7.9e-16 Score=138.43 Aligned_cols=106 Identities=26% Similarity=0.580 Sum_probs=92.2
Q ss_pred CCCeEEEcccchHHHhh--cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CC-CCC--CCCCcC
Q 023747 147 NANVQIVVGKTFDDLVL--NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EHP--KLQVEE 220 (278)
Q Consensus 147 ~~~v~~l~~~~~~~~i~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~-~~-~~~--~~~i~~ 220 (278)
...|..++.++|++++. +.++.++|.||+|||++|+.+.|.|.+++..+.+. ++.|+.+|++ .+ +++ +++|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 45789999999999874 56889999999999999999999999999999764 5999999999 54 553 589999
Q ss_pred CCeEEEEeCCCccCceEecC-CCCHHHHHHHHHHH
Q 023747 221 YPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIKEQ 254 (278)
Q Consensus 221 ~Ptl~~f~~g~~~~~~~~~g-~~~~~~l~~~i~~~ 254 (278)
+||+++|++|... ++.|.| .++.++|+.||+..
T Consensus 423 ~PTil~f~~g~~~-~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSR-PIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCC-eeecCCCCcCHHHHHHHHHHh
Confidence 9999999988754 678985 69999999999864
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.64 E-value=2.1e-15 Score=111.90 Aligned_cols=99 Identities=23% Similarity=0.476 Sum_probs=81.3
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCC---CC-CCCCCcCCCe
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN---EH-PKLQVEEYPT 223 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~-~~~~~~vd~~~~---~~-~~~~i~~~Pt 223 (278)
.+..++.++|.+.+.+.+++++|.||++||++|+.+.|.|++++..+++.. .+.|+.+||+.. ++ .++++..+|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 478899999999998888899999999999999999999999999997533 589999998753 34 4889999999
Q ss_pred EEEEeCCCccCc--eEecCC-CCHHHH
Q 023747 224 LLFYPAGDKANP--IKVSAR-SSSKNI 247 (278)
Q Consensus 224 l~~f~~g~~~~~--~~~~g~-~~~~~l 247 (278)
+++|++|..... ..|+|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 999998874432 356665 555554
No 49
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.63 E-value=2.4e-15 Score=111.35 Aligned_cols=98 Identities=22% Similarity=0.390 Sum_probs=82.2
Q ss_pred CCeEEEcc-cchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeE
Q 023747 148 ANVQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL 224 (278)
Q Consensus 148 ~~v~~l~~-~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl 224 (278)
+.+..+++ ++|.+.+ .+++.++|+||++||++|+.+.|.++++++.+. ++.|++||++++ ++ .+|+|..+||+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 45777877 8899888 456899999999999999999999999999986 489999999998 56 58999999999
Q ss_pred EEEeCCCccCceEec--------CCCCHHHHHHHH
Q 023747 225 LFYPAGDKANPIKVS--------ARSSSKNIAAFI 251 (278)
Q Consensus 225 ~~f~~g~~~~~~~~~--------g~~~~~~l~~~i 251 (278)
++|++|+.+. ++. +..+.+++..|+
T Consensus 80 l~fk~G~~v~--~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVD--RIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEE--EEECccccCCCCCCCHHHHHHHh
Confidence 9999998764 222 346777777776
No 50
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.63 E-value=3.3e-15 Score=109.19 Aligned_cols=94 Identities=20% Similarity=0.443 Sum_probs=79.5
Q ss_pred cchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCc
Q 023747 156 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 232 (278)
Q Consensus 156 ~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~-~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~ 232 (278)
++|++. ..++.++|.||++||++|+.+.|.+++++..++... .+.++.+|++.. ++ .+++|.++|++++|++|.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 667763 346799999999999999999999999999996432 599999999887 55 589999999999997653
Q ss_pred cCceEecCCCCHHHHHHHHHHH
Q 023747 233 ANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 233 ~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
...|.|..+.+.|.+|+++-
T Consensus 84 --~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 --AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --ceeecCCCCHHHHHHHHHhh
Confidence 34799999999999999863
No 51
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.63 E-value=1.9e-15 Score=109.91 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=83.4
Q ss_pred ccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEE
Q 023747 21 SNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 99 (278)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~ 99 (278)
.++..+++..+.. .+++++|+||++| ++|+.+.|.|.++++.+.+.+.|+.||+++. +.+|++|+|.++ ||+
T Consensus 3 ~lt~~~f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~v~~~-Pt~- 75 (103)
T PF00085_consen 3 VLTDENFEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN---KELCKKYGVKSV-PTI- 75 (103)
T ss_dssp EESTTTHHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS---HHHHHHTTCSSS-SEE-
T ss_pred ECCHHHHHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc---chhhhccCCCCC-CEE-
Confidence 3445555444433 4789999999999 9999999999999999998899999999998 899999999999 999
Q ss_pred EEecCCcceeecCCCCCChHHHHHHHHHH
Q 023747 100 TAFDNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 100 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
.++.+|... ..+.|..+.++|.+|++++
T Consensus 76 ~~~~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 666655433 2568999999999999863
No 52
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.62 E-value=1.5e-15 Score=111.81 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=81.8
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc------CceEEEEEeCCCcccchhHHHHcCC
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK------GKIMFTAVDIADEDLAKPFLTLFGL 91 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~------~~v~f~~vd~~~~~~~~~l~~~~~i 91 (278)
++.+++++++..+ ...++++|.||++| ++|+.+.|.|+++++.++ +.+.|+.|||+.+ ..+|++|||
T Consensus 3 v~~l~~~~f~~~i---~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---~~l~~~~~v 76 (108)
T cd02996 3 IVSLTSGNIDDIL---QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---SDIADRYRI 76 (108)
T ss_pred eEEcCHhhHHHHH---hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC---HHHHHhCCC
Confidence 4556666666543 55678999999999 999999999999999864 2599999999999 899999999
Q ss_pred CCCCceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 92 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 92 ~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
.++ ||+ .+|..|......|.|.++.++|.+|+
T Consensus 77 ~~~-Ptl-~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 77 NKY-PTL-KLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CcC-CEE-EEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999 999 66665553456679999999999885
No 53
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.62 E-value=2.5e-15 Score=108.40 Aligned_cols=98 Identities=40% Similarity=0.774 Sum_probs=82.8
Q ss_pred EEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeC
Q 023747 152 IVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPA 229 (278)
Q Consensus 152 ~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~ 229 (278)
.++.++|.+.+.+. ++++|+||++||++|+.+.+.+.++++.++....+.|+.+|++.+ .+ .+++|..+|++++|++
T Consensus 2 ~l~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46778899887554 499999999999999999999999999995323799999999987 55 5899999999999988
Q ss_pred CCccCceEecCCCCHHHHHHHH
Q 023747 230 GDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 230 g~~~~~~~~~g~~~~~~l~~~i 251 (278)
|+.. ..+|.|..+.+.+.+|+
T Consensus 81 ~~~~-~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKE-PVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcc-cccCCCCcCHHHHHhhC
Confidence 7322 44899999999999885
No 54
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.62 E-value=4.9e-15 Score=117.98 Aligned_cols=106 Identities=21% Similarity=0.350 Sum_probs=88.0
Q ss_pred CCCCeEEEcc-cchHHHhhcCC--CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCC
Q 023747 146 TNANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEY 221 (278)
Q Consensus 146 ~~~~v~~l~~-~~~~~~i~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~ 221 (278)
..+.+..++. ++|.+.+...+ ..++|+||++||++|+.+.|.+..+|..+. .+.|++||++..++ .+|++..+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~~l~~~f~v~~v 136 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASATGASDEFDTDAL 136 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccchhhHHhCCCCCC
Confidence 3567899999 99999986654 489999999999999999999999999986 59999999997755 58999999
Q ss_pred CeEEEEeCCCccCceE-ec----CCCCHHHHHHHHHHH
Q 023747 222 PTLLFYPAGDKANPIK-VS----ARSSSKNIAAFIKEQ 254 (278)
Q Consensus 222 Ptl~~f~~g~~~~~~~-~~----g~~~~~~l~~~i~~~ 254 (278)
||+++|++|+.+..+. +. ...+.++|..||.++
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9999999998764221 11 257888888888753
No 55
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-15 Score=126.02 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=98.3
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCce
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 97 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Pt 97 (278)
|+.++..||+..+...+...|++|+||+|| ++|+.+.|.+++++..|+|++++++|||+.+ +.++.+|||.+. ||
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~---p~vAaqfgiqsI-Pt 100 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE---PMVAAQFGVQSI-PT 100 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc---hhHHHHhCcCcC-Ce
Confidence 778999999999999999999999999999 9999999999999999999999999999999 999999999999 99
Q ss_pred EEEEecCCcceeecCCCCCChHHHHHHHHHHhcC
Q 023747 98 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 131 (278)
Q Consensus 98 l~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 131 (278)
++.+.+|.....| .|....+.+.+|++.++..
T Consensus 101 V~af~dGqpVdgF--~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVDGF--QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcccc--CCCCcHHHHHHHHHHhcCh
Confidence 9888887765554 8888999999999998743
No 56
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.60 E-value=6.6e-15 Score=121.10 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=89.3
Q ss_pred cccccCCCCceeeeeeee--cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCC
Q 023747 18 TLISNLPTTSLELLKVSQ--IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 94 (278)
Q Consensus 18 ~~v~~~~~~~~~~~~~~~--~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~ 94 (278)
.++.++++|++..+.... ..++++|.||++| ++|+.+.|.|+++++++++.+.|+.+||+.+ +.++++|+|.++
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~---~~l~~~~~I~~~ 107 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA---LNLAKRFAIKGY 107 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc---HHHHHHcCCCcC
Confidence 467777878877554432 3578999999999 9999999999999999999999999999999 899999999999
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHHHHHhc
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 130 (278)
||+ .+|+.|....| +.|.++.+++.+|+.+...
T Consensus 108 -PTl-~~f~~G~~v~~-~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 108 -PTL-LLFDKGKMYQY-EGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred -CEE-EEEECCEEEEe-eCCCCCHHHHHHHHHHHHH
Confidence 999 67765543332 4677999999999988763
No 57
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.60 E-value=3.2e-15 Score=110.20 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=86.2
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHH-HcCCCCCC
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLT-LFGLEESK 95 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~~~~~l~~-~~~i~~~~ 95 (278)
++.+++.+++.+....+.+++++|.||++| ++|+.+.|.|.++++.+++. +.|+.|||+..+ ..+|+ .++|.++
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~- 79 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSF- 79 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcC-
Confidence 466677777777776677889999999999 99999999999999999974 999999999731 57887 4999999
Q ss_pred ceEEEEecCCcceeecCCCC-CChHHHHHHH
Q 023747 96 NTVVTAFDNKAISKFLLESD-LTPSNIEEFC 125 (278)
Q Consensus 96 Ptl~~~~~~~~~~~~~~~g~-~~~~~i~~fi 125 (278)
||+ .+|+.+....+.|.|. ++.++|..|+
T Consensus 80 Pti-~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTI-LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEE-EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999 7776665556778985 8999999885
No 58
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.7e-15 Score=134.42 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=147.3
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCCcccchhHHHHcCCCCCC
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDLAKPFLTLFGLEESK 95 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~--~~v~f~~vd~~~~~~~~~l~~~~~i~~~~ 95 (278)
++.+++.++...+.. .+..++|.||+|| ++|+.+.|.|.+++..++ +.+.++.+||+.. ..+|+.++|.++
T Consensus 146 v~~l~~~~~~~~~~~--~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~---~~~~~~~~v~~~- 219 (383)
T KOG0191|consen 146 VFELTKDNFDETVKD--SDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH---KSLASRLEVRGY- 219 (383)
T ss_pred eEEccccchhhhhhc--cCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH---HHHhhhhcccCC-
Confidence 455666666555554 4556999999999 999999999999999996 5699999999977 899999999999
Q ss_pred ceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCC--C-eEEEcccchHHHhhcCCCcEEEE
Q 023747 96 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNA--N-VQIVVGKTFDDLVLNSHKDVLLE 172 (278)
Q Consensus 96 Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~--~-v~~l~~~~~~~~i~~~~~~~~v~ 172 (278)
||+ .+|..+....+.+.|.++.+.+..|+.+....+..+. .+.+.... . ...++.+++... ......+++.
T Consensus 220 Pt~-~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~ 293 (383)
T KOG0191|consen 220 PTL-KLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEP----ELKEIEDKDTFSPTFLDTAEFLDS-LEKKKNKFVK 293 (383)
T ss_pred ceE-EEecCCCcccccccccccHHHHHHHHHhhcCCCCCCc----ccccccCccccccchhhhhhhhhh-hHHhhhhHhh
Confidence 999 7776654435567889999999999999765431111 01100000 0 001111222221 1234568999
Q ss_pred EECCCChhHHHHHHHHHHHHHH-hcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCcc
Q 023747 173 VYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKA 233 (278)
Q Consensus 173 f~~~~c~~c~~~~~~~~~~a~~-~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~ 233 (278)
|+++||.+|....|.+...+.. +.....+.+.+++|... .. ....++.+|++.++..+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (383)
T KOG0191|consen 294 FYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGKNP 357 (383)
T ss_pred hhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccccc
Confidence 9999999999999999999998 22222689999998877 43 36678999999999877654
No 59
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.59 E-value=7.8e-15 Score=105.78 Aligned_cols=92 Identities=21% Similarity=0.376 Sum_probs=81.2
Q ss_pred chHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccC
Q 023747 157 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKAN 234 (278)
Q Consensus 157 ~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~ 234 (278)
.++..+.+.+++++|+||++||+.|+.+.+.++++++.+.+ ++.++.+|++++ ++ .++++.++|++++|++|+.+.
T Consensus 4 ~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 4 ALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred hHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 45677778899999999999999999999999999999976 699999999988 56 589999999999999887654
Q ss_pred ceEecCCCCHHHHHHHHH
Q 023747 235 PIKVSARSSSKNIAAFIK 252 (278)
Q Consensus 235 ~~~~~g~~~~~~l~~~i~ 252 (278)
.+.|..+.+.|..||+
T Consensus 82 --~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 --EISGVKMKSEYREFIE 97 (97)
T ss_pred --EEeCCccHHHHHHhhC
Confidence 7889999999998873
No 60
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.59 E-value=4.7e-15 Score=109.17 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=84.6
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCce
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 97 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Pt 97 (278)
|+.++.+++...+. +.+.+++|.||++| ++|+.+.|.|+++++.+.+.+.|+.+||+...+ ..+|++|+|.++ ||
T Consensus 2 v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~~~~~~~~i~~~-Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-KPLCGKYGVQGF-PT 77 (109)
T ss_pred eEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-HHHHHHcCCCcC-CE
Confidence 45666767665554 34667999999999 999999999999999999889999999998322 799999999999 99
Q ss_pred EEEEecCCc----ceeecCCCCCChHHHHHHH
Q 023747 98 VVTAFDNKA----ISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 98 l~~~~~~~~----~~~~~~~g~~~~~~i~~fi 125 (278)
+ .+++.+. ...+.|.|.++.++|.+|+
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 78 L-KVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred E-EEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9 6666554 2456779999999999997
No 61
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.59 E-value=4e-15 Score=110.52 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=82.6
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cc--hH--HHHHHHHHHHHHh--cCceEEEEEeCCCcccchhHHHHcCC
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DD--LK--SLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGL 91 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~--c~--~~~~~~~~la~~~--~~~v~f~~vd~~~~~~~~~l~~~~~i 91 (278)
++.++.+||+..+.. .+.++++.|++.| ++ |+ .+.|.+.++|.++ .+.+.|++||++++ +.|+++|||
T Consensus 11 v~~lt~~nF~~~v~~--~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~---~~La~~~~I 85 (120)
T cd03065 11 VIDLNEKNYKQVLKK--YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD---AKVAKKLGL 85 (120)
T ss_pred eeeCChhhHHHHHHh--CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC---HHHHHHcCC
Confidence 455667777665433 5556777777777 65 99 7899999999999 77899999999999 999999999
Q ss_pred CCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHh
Q 023747 92 EESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 92 ~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 129 (278)
.++ ||| .+|.+|... .|.|.++.+.|.+|+++++
T Consensus 86 ~~i-PTl-~lfk~G~~v--~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEE-DSI-YVFKDDEVI--EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccc-cEE-EEEECCEEE--EeeCCCCHHHHHHHHHHHh
Confidence 999 999 666555432 3799999999999999864
No 62
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.59 E-value=1.3e-14 Score=110.38 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=81.2
Q ss_pred cccchHHHhhc-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE-EEeC
Q 023747 154 VGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL-FYPA 229 (278)
Q Consensus 154 ~~~~~~~~i~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~-~f~~ 229 (278)
+..+|++.+.. .++.++|.|||+||++|+.+.|.++++++++.+ .+.|+.||+|++ ++ ..|+|.+.|+++ +|++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 35788888864 478999999999999999999999999999986 589999999998 67 589999776666 8898
Q ss_pred CC-ccCceEecC--------CCCHHHHHHHHHHHhc
Q 023747 230 GD-KANPIKVSA--------RSSSKNIAAFIKEQLK 256 (278)
Q Consensus 230 g~-~~~~~~~~g--------~~~~~~l~~~i~~~~~ 256 (278)
|+ .+. +..| ..+.++|.+-+.....
T Consensus 88 g~~~vd--~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 88 KHIMID--LGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred CeEEEE--EecccccccccccCCHHHHHHHHHHHHH
Confidence 87 433 5566 4677888888876653
No 63
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.3e-15 Score=107.03 Aligned_cols=84 Identities=26% Similarity=0.592 Sum_probs=69.9
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCC
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR 241 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~ 241 (278)
..++.++|.|||+||++|+.+.|.+.++|.+|.+ +.|.++|+++. ++ .++++..+||+++|++|+.+. .+.|.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~--~~vGa 93 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD--EVVGA 93 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE--EEecC
Confidence 3468999999999999999999999999999985 99999999985 44 489999999999999998775 56654
Q ss_pred CCHHHHHHHHHH
Q 023747 242 SSSKNIAAFIKE 253 (278)
Q Consensus 242 ~~~~~l~~~i~~ 253 (278)
.. +.+.+.|..
T Consensus 94 ~~-~~l~~~i~~ 104 (106)
T KOG0907|consen 94 NK-AELEKKIAK 104 (106)
T ss_pred CH-HHHHHHHHh
Confidence 33 366665544
No 64
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7.2e-15 Score=110.85 Aligned_cols=96 Identities=19% Similarity=0.165 Sum_probs=84.2
Q ss_pred eeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCc
Q 023747 28 LELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA 106 (278)
Q Consensus 28 ~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~ 106 (278)
++..++.+++.|++|.|+++| ++|+.+.|.+++++.+|.|++.|+++|.+++ .+|+.+|+|... ||+ .+|.+|.
T Consensus 52 ~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~---~ela~~Y~I~av-Ptv-lvfknGe 126 (150)
T KOG0910|consen 52 EFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH---PELAEDYEISAV-PTV-LVFKNGE 126 (150)
T ss_pred HHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc---cchHhhcceeee-eEE-EEEECCE
Confidence 345667788899999999999 9999999999999999999999999999999 999999999999 999 5665554
Q ss_pred ceeecCCCCCChHHHHHHHHHHh
Q 023747 107 ISKFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 107 ~~~~~~~g~~~~~~i~~fi~~~~ 129 (278)
. .-.+-|..+.+.+.+++++++
T Consensus 127 ~-~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 127 K-VDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred E-eeeecccCCHHHHHHHHHHHh
Confidence 3 233478899999999999976
No 65
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.58 E-value=7e-15 Score=107.97 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=75.2
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCccchHHHHHHHHHHHHHhc---CceEEEEEeCCCccc--chhHHHHcCCC-
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKADDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDL--AKPFLTLFGLE- 92 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~~~c~~~~~~~~~la~~~~---~~v~f~~vd~~~~~~--~~~l~~~~~i~- 92 (278)
++.++++||+..+ +....++|.||++|+.|.+ .|++.++|.++. +.|.++.|||+++++ ..+||++|||.
T Consensus 3 ~v~L~~~nF~~~v---~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLDTVTFYKVI---PKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECChhhHHHHH---hcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 4677788887654 5567799999995544544 366666666553 249999999954211 17899999999
Q ss_pred -CCCceEEEEecCC-cceeecCCCC-CChHHHHHHHHH
Q 023747 93 -ESKNTVVTAFDNK-AISKFLLESD-LTPSNIEEFCSR 127 (278)
Q Consensus 93 -~~~Ptl~~~~~~~-~~~~~~~~g~-~~~~~i~~fi~~ 127 (278)
+| ||| .+|.++ ......|.|. ++.+.|.+|+.+
T Consensus 79 ~gy-PTl-~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 79 ESY-PVI-YLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred CCC-CEE-EEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 99 999 777655 2234567996 999999999986
No 66
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.57 E-value=6e-15 Score=122.23 Aligned_cols=104 Identities=23% Similarity=0.464 Sum_probs=91.2
Q ss_pred cccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC---CceEEEEEeCCCC-CC-CCCCCcCCCeEEEEe
Q 023747 154 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL---DNLVIAKIDASAN-EH-PKLQVEEYPTLLFYP 228 (278)
Q Consensus 154 ~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~---~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~ 228 (278)
+..|++.++ +....++|.|||+||+.++.+.|+|+++|..++.. +++++|.|||+.+ ++ .+|.|..|||+.+|.
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 567788766 55889999999999999999999999999998643 2799999999999 66 599999999999999
Q ss_pred CCCccCceEecCCCCHHHHHHHHHHHhcccC
Q 023747 229 AGDKANPIKVSARSSSKNIAAFIKEQLKEKD 259 (278)
Q Consensus 229 ~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 259 (278)
+|.-++ -.|.|.++.+.|.+||++++....
T Consensus 81 nG~~~~-rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 81 NGEMMK-REYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ccchhh-hhhccchhHHHHHHHHHHHhccHH
Confidence 998763 379999999999999999987653
No 67
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.57 E-value=1.7e-14 Score=103.86 Aligned_cols=92 Identities=25% Similarity=0.520 Sum_probs=75.8
Q ss_pred ccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCC
Q 023747 155 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 155 ~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~ 231 (278)
.++|++.+... ++.++|.||++||++|+.+.+.+++++..+.. .+.++.+|++.. ++ .+|++.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 45777877655 68999999999999999999999999999744 799999999877 55 589999999999999887
Q ss_pred ccCceEecCCCCHHHHHHHH
Q 023747 232 KANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 232 ~~~~~~~~g~~~~~~l~~~i 251 (278)
.+. ++.| .+.+.|.+.|
T Consensus 80 ~~~--~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVD--RVSG-ADPKELAKKV 96 (97)
T ss_pred EEE--EEeC-CCHHHHHHhh
Confidence 553 4555 4667777665
No 68
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.56 E-value=1.5e-14 Score=105.04 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=67.7
Q ss_pred cchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCc
Q 023747 156 KTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDK 232 (278)
Q Consensus 156 ~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~ 232 (278)
+++++.+.+. ++.++|.|+++||++|+.+.|.++++|..+.+ .+.|+.||+++. ++ .+|+|...||+++|++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4567777654 88999999999999999999999999999974 499999999998 77 5899999999999999987
Q ss_pred c
Q 023747 233 A 233 (278)
Q Consensus 233 ~ 233 (278)
+
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 6
No 69
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.56 E-value=4.8e-14 Score=108.68 Aligned_cols=98 Identities=14% Similarity=0.399 Sum_probs=81.3
Q ss_pred cchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC---C-CCCCCcCCCeEEEEe-CC
Q 023747 156 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---H-PKLQVEEYPTLLFYP-AG 230 (278)
Q Consensus 156 ~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~---~-~~~~i~~~Ptl~~f~-~g 230 (278)
..|++.+ ..+++++|.||++||++|+.+.|.+.+++..+.+ ++.|+.||++... + .+|+|.++|++++|. +|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 5566644 6688999999999999999999999999999976 5788888877652 3 589999999999995 66
Q ss_pred CccCceEecCCCCHHHHHHHHHHHhccc
Q 023747 231 DKANPIKVSARSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 231 ~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 258 (278)
+.+. ++.|..+.+.|..+|.+.+.-.
T Consensus 88 ~~v~--~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG--QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE--EEeCCCCHHHHHHHHHHHHcCC
Confidence 6543 7889999999999999988543
No 70
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.56 E-value=1.8e-14 Score=104.81 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=76.8
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.+.+++++||++| ++|+.+.|.|.++++++.+.+.|+.+||+++ ..++++|+|.++ |++ .+++.+....+.|.|
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~i~~~-P~~-~~~~~~~~~~~~~~g 91 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH---QSLAQQYGVRGF-PTI-KVFGAGKNSPQDYQG 91 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch---HHHHHHCCCCcc-CEE-EEECCCCcceeecCC
Confidence 4556999999999 9999999999999999999999999999998 899999999999 999 677766556777899
Q ss_pred CCChHHHHHHH
Q 023747 115 DLTPSNIEEFC 125 (278)
Q Consensus 115 ~~~~~~i~~fi 125 (278)
..+.++|.+|+
T Consensus 92 ~~~~~~l~~~~ 102 (103)
T cd03001 92 GRTAKAIVSAA 102 (103)
T ss_pred CCCHHHHHHHh
Confidence 99999999986
No 71
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.55 E-value=2.5e-14 Score=115.41 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=85.6
Q ss_pred CCCCeEEEcccchHHHhhcCC--CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCe
Q 023747 146 TNANVQIVVGKTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 223 (278)
Q Consensus 146 ~~~~v~~l~~~~~~~~i~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Pt 223 (278)
..+.|..++..+|...+...+ .+++|+||++||++|+.+.+.|.++|..+. .+.|++||++.. +..|++..+||
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~-~~~~~i~~lPT 155 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC-IPNYPDKNLPT 155 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh-HhhCCCCCCCE
Confidence 457899999999998776553 489999999999999999999999999986 489999998753 46899999999
Q ss_pred EEEEeCCCccCceEecC-------CCCHHHHHHHHHH
Q 023747 224 LLFYPAGDKANPIKVSA-------RSSSKNIAAFIKE 253 (278)
Q Consensus 224 l~~f~~g~~~~~~~~~g-------~~~~~~l~~~i~~ 253 (278)
+++|++|+.+. .+.| ..+.++|..+|.+
T Consensus 156 lliyk~G~~v~--~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 156 ILVYRNGDIVK--QFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEECCEEEE--EEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999998765 3333 5778888887764
No 72
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.55 E-value=3e-14 Score=103.45 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=80.4
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCCCCc
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKN 96 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~~~P 96 (278)
++.+++++++..+ ++ .++|.||++| ++|+.+.|.|++++..+++ .+.|+.+||+++ +.++++|+|.++ |
T Consensus 3 v~~l~~~~f~~~~---~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~---~~~~~~~~i~~~-P 73 (101)
T cd02994 3 VVELTDSNWTLVL---EG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE---PGLSGRFFVTAL-P 73 (101)
T ss_pred eEEcChhhHHHHh---CC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC---HhHHHHcCCccc-C
Confidence 5667777777543 33 3899999999 9999999999999998875 599999999998 899999999999 9
Q ss_pred eEEEEecCCcceeecCCCCCChHHHHHHHH
Q 023747 97 TVVTAFDNKAISKFLLESDLTPSNIEEFCS 126 (278)
Q Consensus 97 tl~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 126 (278)
|+ .++..|.. ..+.|..+.++|.+|++
T Consensus 74 t~-~~~~~g~~--~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 74 TI-YHAKDGVF--RRYQGPRDKEDLISFIE 100 (101)
T ss_pred EE-EEeCCCCE--EEecCCCCHHHHHHHHh
Confidence 99 55655543 45689999999999986
No 73
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=2.5e-14 Score=104.44 Aligned_cols=91 Identities=21% Similarity=0.453 Sum_probs=75.4
Q ss_pred cchHHHhhcCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCceEEEEEeCCCC-----CC-CCCCCcCCCeEEE
Q 023747 156 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-----EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 156 ~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~~~~~~vd~~~~-----~~-~~~~i~~~Ptl~~ 226 (278)
+.|.+.+ ..+++++|+||++||++|+.+.+.+ .+++..+.+ ++.++.+|++.+ ++ .++++.++|++++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 4566655 6679999999999999999999888 678888876 799999999864 23 4789999999999
Q ss_pred Ee--CCCccCceEecCCCCHHHHHHHH
Q 023747 227 YP--AGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 227 f~--~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
|+ +|+. ..++.|..+.++|.++|
T Consensus 79 ~~~~~g~~--~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPE--PLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCC--CcccccccCHHHHHHHh
Confidence 98 4554 34789999999999887
No 74
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.54 E-value=3e-14 Score=103.21 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=73.0
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCC-CcccchhHHHHcCCCCCCceEEEEecCCcceeecCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 113 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~-~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~ 113 (278)
.+++++|.||++| ++|+.+.|.|+++++.+.+ +.|+.||++ .. +.++++|+|.++ ||+ .+|+++ ....+.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~---~~l~~~~~V~~~-PT~-~lf~~g--~~~~~~ 88 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIK---PSLLSRYGVVGF-PTI-LLFNST--PRVRYN 88 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCC---HHHHHhcCCeec-CEE-EEEcCC--ceeEec
Confidence 4678999999999 9999999999999999987 889999998 67 899999999999 999 777766 345669
Q ss_pred CCCChHHHHHHH
Q 023747 114 SDLTPSNIEEFC 125 (278)
Q Consensus 114 g~~~~~~i~~fi 125 (278)
|.++.++|.+|+
T Consensus 89 G~~~~~~l~~f~ 100 (100)
T cd02999 89 GTRTLDSLAAFY 100 (100)
T ss_pred CCCCHHHHHhhC
Confidence 999999999885
No 75
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.54 E-value=4.7e-14 Score=104.50 Aligned_cols=90 Identities=23% Similarity=0.369 Sum_probs=77.9
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCC
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR 241 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~ 241 (278)
..+..++|+||++||++|+.+.+.+++++..+ + .+.+..+|++.+ ++ .+|++.++|++++|++|+....+++.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 34566889999999999999999999999886 3 689999999988 55 5899999999999998876656689999
Q ss_pred CCHHHHHHHHHHHhc
Q 023747 242 SSSKNIAAFIKEQLK 256 (278)
Q Consensus 242 ~~~~~l~~~i~~~~~ 256 (278)
.+..++..||...+.
T Consensus 97 ~~~~el~~~i~~i~~ 111 (113)
T cd02975 97 PAGYEFASLIEDIVR 111 (113)
T ss_pred CchHHHHHHHHHHHh
Confidence 999999999987765
No 76
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.53 E-value=3.3e-14 Score=105.10 Aligned_cols=87 Identities=9% Similarity=0.183 Sum_probs=76.0
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 112 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~ 112 (278)
+.+++++|.||++| ++|+.+.|.|+++++++++ .+.|+.|||+.. +.+++++||.++ ||+ .++..+. ....+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~---~~l~~~~~V~~~-Pt~-~i~~~g~-~~~~~ 95 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE---RRLARKLGAHSV-PAI-VGIINGQ-VTFYH 95 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc---HHHHHHcCCccC-CEE-EEEECCE-EEEEe
Confidence 46789999999999 9999999999999999986 499999999998 899999999999 999 6666553 34445
Q ss_pred CCCCChHHHHHHHHH
Q 023747 113 ESDLTPSNIEEFCSR 127 (278)
Q Consensus 113 ~g~~~~~~i~~fi~~ 127 (278)
.|..+.+.|.+|+++
T Consensus 96 ~G~~~~~~l~~~i~~ 110 (111)
T cd02963 96 DSSFTKQHVVDFVRK 110 (111)
T ss_pred cCCCCHHHHHHHHhc
Confidence 788999999999875
No 77
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.52 E-value=1.3e-14 Score=120.20 Aligned_cols=93 Identities=17% Similarity=0.427 Sum_probs=81.7
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecC
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA 240 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~-~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g 240 (278)
.++..|+|.||||||.+|+.+.|+|.+++..++..+ -+.++++||... .+ .+++|.+|||+.+|+++.. +.|.|
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a---~dYRG 117 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHA---IDYRG 117 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCee---eecCC
Confidence 346789999999999999999999999999998765 589999999998 56 4999999999999998763 47999
Q ss_pred CCCHHHHHHHHHHHhcccC
Q 023747 241 RSSSKNIAAFIKEQLKEKD 259 (278)
Q Consensus 241 ~~~~~~l~~~i~~~~~~~~ 259 (278)
.++.+.|+.|..+-.++-.
T Consensus 118 ~R~Kd~iieFAhR~a~aiI 136 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAII 136 (468)
T ss_pred CccHHHHHHHHHhccccee
Confidence 9999999999987766543
No 78
>PTZ00051 thioredoxin; Provisional
Probab=99.52 E-value=8e-14 Score=100.56 Aligned_cols=91 Identities=21% Similarity=0.493 Sum_probs=74.1
Q ss_pred eEEEcc-cchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 150 VQIVVG-KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 150 v~~l~~-~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
|..+++ +++.+.+ +.++.++|.||++||++|+.+.+.+.+++..+. ++.|+.+|++.+ ++ .+|++.++|++++
T Consensus 2 v~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 445554 5666655 678899999999999999999999999999876 489999999987 55 5899999999999
Q ss_pred EeCCCccCceEecCCCCHHHH
Q 023747 227 YPAGDKANPIKVSARSSSKNI 247 (278)
Q Consensus 227 f~~g~~~~~~~~~g~~~~~~l 247 (278)
|++|+... .+.|. ..++|
T Consensus 78 ~~~g~~~~--~~~G~-~~~~~ 95 (98)
T PTZ00051 78 FKNGSVVD--TLLGA-NDEAL 95 (98)
T ss_pred EeCCeEEE--EEeCC-CHHHh
Confidence 99998764 67774 44444
No 79
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.52 E-value=7.3e-14 Score=101.29 Aligned_cols=87 Identities=24% Similarity=0.297 Sum_probs=78.6
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 112 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~--~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~ 112 (278)
.+.+++++||++| ++|+.+.+.|++++..+++ .+.|+.+||+.+ +.++++|+|.++ |++ .+++.+.. .+.+
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~i~~~-P~~-~~~~~~~~-~~~~ 85 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFGVSGF-PTI-KFFPKGKK-PVDY 85 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCCCCcC-CEE-EEecCCCc-ceee
Confidence 6778999999999 9999999999999999987 699999999999 999999999999 999 77766654 6777
Q ss_pred CCCCChHHHHHHHHHH
Q 023747 113 ESDLTPSNIEEFCSRL 128 (278)
Q Consensus 113 ~g~~~~~~i~~fi~~~ 128 (278)
.|..+.++|..|+++.
T Consensus 86 ~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 86 EGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCCHHHHHHHHHhc
Confidence 9999999999999874
No 80
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.51 E-value=4.7e-14 Score=102.47 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=78.7
Q ss_pred cccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHcCCCCCC
Q 023747 20 ISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESK 95 (278)
Q Consensus 20 v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~~i~~~~ 95 (278)
+.++++++...+ .. .+++|.||++| ++|+.+.|.|.++++++++ .+.|+.+||+.. ..+|++|+|.++
T Consensus 3 ~~l~~~~f~~~~---~~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~- 74 (102)
T cd03005 3 LELTEDNFDHHI---AE-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH---RELCSEFQVRGY- 74 (102)
T ss_pred eECCHHHHHHHh---hc-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC---hhhHhhcCCCcC-
Confidence 455566655544 22 35999999999 9999999999999999987 699999999998 899999999999
Q ss_pred ceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 96 NTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 96 Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
||+ .++..+. ....+.|.++.++|.+|+
T Consensus 75 Pt~-~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 75 PTL-LLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CEE-EEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 999 5555553 455679999999988875
No 81
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.51 E-value=1.8e-13 Score=102.60 Aligned_cols=96 Identities=10% Similarity=0.173 Sum_probs=76.8
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC---C----------CC-
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---H----------PK- 215 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~---~----------~~- 215 (278)
+..++.+++.+.+ .+++.++|+|+++||++|+.+.|.+.+++++. ++.+..+|++.+. + .+
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 5667888898887 55778999999999999999999999999983 4677888877541 1 12
Q ss_pred ---CCCcCCCeEEEEeCCCccCceEecC-CCCHHHHHHHHH
Q 023747 216 ---LQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAAFIK 252 (278)
Q Consensus 216 ---~~i~~~Ptl~~f~~g~~~~~~~~~g-~~~~~~l~~~i~ 252 (278)
.++.++||+++|++|+.+. +..| ..+.++|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~--~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVS--VRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEE--EEeCCCCCHHHHHHHhh
Confidence 3566799999999999875 6677 567899998874
No 82
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.51 E-value=2e-13 Score=98.14 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=73.9
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
+++++|.||++| ++|+.+.|.++++++.+.+.+.|+.||++.. +.++++|+|.++ ||+ .++++|. ....+.|.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~l~~~~~i~~~-Pt~-~~~~~g~-~~~~~~g~ 85 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ---PQIAQQFGVQAL-PTV-YLFAAGQ-PVDGFQGA 85 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC---HHHHHHcCCCCC-CEE-EEEeCCE-EeeeecCC
Confidence 578999999999 9999999999999999998899999999999 999999999999 999 5565443 33446888
Q ss_pred CChHHHHHHHH
Q 023747 116 LTPSNIEEFCS 126 (278)
Q Consensus 116 ~~~~~i~~fi~ 126 (278)
.+.++|.+|++
T Consensus 86 ~~~~~l~~~l~ 96 (96)
T cd02956 86 QPEEQLRQMLD 96 (96)
T ss_pred CCHHHHHHHhC
Confidence 99999998873
No 83
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.51 E-value=3.6e-12 Score=102.50 Aligned_cols=173 Identities=18% Similarity=0.337 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC-CChHHHHHHHHHHhcC
Q 023747 53 SLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPSNIEEFCSRLLHG 131 (278)
Q Consensus 53 ~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~~ 131 (278)
.....|.++|+.+.+.+.|+.+. . ..+++++++.. |++ .++..+......|.|. .+.++|.+|+....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~---~~~~~~~~~~~--p~i-~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~-- 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---N---EELAKKYGIKE--PTI-VVYKKFDEKPVVYDGDKFTPEELKKFIKKNS-- 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS--SEE-EEEECTTTSEEEESSSTTSHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---H---HHHHHHhCCCC--CcE-EEeccCCCCceecccccCCHHHHHHHHHHhc--
Confidence 56788999999999889999887 4 68999999987 999 5555544456667887 89999999999864
Q ss_pred cccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 132 TLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 132 ~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
-..|..++..++..+.......+++.|+.........+...+..+|+.+++ ++.|+.+|++..
T Consensus 76 ---------------~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~ 138 (184)
T PF13848_consen 76 ---------------FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDF 138 (184)
T ss_dssp ---------------STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTT
T ss_pred ---------------cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHh
Confidence 224899999999997633333477788776677788889999999999998 799999999965
Q ss_pred -CC-CCCCCc--CCCeEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 023747 212 -EH-PKLQVE--EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 212 -~~-~~~~i~--~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
.. ..++++ .+|+++++........+.+.+..+.++|.+|+++
T Consensus 139 ~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 139 PRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 33 466776 8999999974333222234789999999999974
No 84
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.50 E-value=1.2e-13 Score=100.68 Aligned_cols=99 Identities=15% Similarity=0.202 Sum_probs=81.1
Q ss_pred cccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCC-cccchhHHHHcCCCCCC
Q 023747 20 ISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIAD-EDLAKPFLTLFGLEESK 95 (278)
Q Consensus 20 v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~--~~v~f~~vd~~~-~~~~~~l~~~~~i~~~~ 95 (278)
+.+++.++...+ .+.+++++++||++| ++|+.+.|.|.++++.++ +.+.|+.+||+. . +.+|++|+|.++
T Consensus 3 ~~l~~~~~~~~~--~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~~i~~~- 76 (105)
T cd02998 3 VELTDSNFDKVV--GDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN---KDLAKKYGVSGF- 76 (105)
T ss_pred EEcchhcHHHHh--cCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc---hhhHHhCCCCCc-
Confidence 445555555533 223458999999999 999999999999999997 469999999999 7 899999999999
Q ss_pred ceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 96 NTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 96 Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
|++ .++..+....+.+.|.++.++|.+|+
T Consensus 77 P~~-~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTL-KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEE-EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999 66665545567789999999999885
No 85
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=9.5e-14 Score=124.37 Aligned_cols=227 Identities=16% Similarity=0.171 Sum_probs=145.6
Q ss_pred ccCCcccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc---CceEEEEEeCCCcccchhHHH
Q 023747 12 RLPKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK---GKIMFTAVDIADEDLAKPFLT 87 (278)
Q Consensus 12 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~---~~v~f~~vd~~~~~~~~~l~~ 87 (278)
..|+ .+|+.++-.++...+...+ +.++|.||++| |+|..++|.|+++|+.+. ..|.+++|||.+..| ..+|+
T Consensus 35 y~~~-D~ii~Ld~~tf~~~v~~~~--~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N-~~lCR 110 (606)
T KOG1731|consen 35 YSPD-DPIIELDVDTFNAAVFGSR--KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN-VKLCR 110 (606)
T ss_pred cCCC-CCeEEeehhhhHHHhcccc--hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh-hhhHh
Confidence 3445 5677777777766555544 57999999999 999999999999999886 469999999998877 79999
Q ss_pred HcCCCCCCceEEEEecCCcce---eecCCCCCChHHHHHHHHHHhcCcccccccCC-CCCCCCCCCeEEEcc-cchHHHh
Q 023747 88 LFGLEESKNTVVTAFDNKAIS---KFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQ-PIPDNTNANVQIVVG-KTFDDLV 162 (278)
Q Consensus 88 ~~~i~~~~Ptl~~~~~~~~~~---~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~-~~p~~~~~~v~~l~~-~~~~~~i 162 (278)
+|+|++| |+| .+|..+... .-.+.|.....++.+++...++...-. ... .+|. ...+..-+. ..+.+.+
T Consensus 111 ef~V~~~-Ptl-ryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~--~~~~~WP~--f~pl~~~~~~~~l~~~~ 184 (606)
T KOG1731|consen 111 EFSVSGY-PTL-RYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQ--NRYPSWPN--FDPLKDTTTLEELDEGI 184 (606)
T ss_pred hcCCCCC-cee-eecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhh--hcCCCCCC--CCCCCCcchHHHHhccc
Confidence 9999999 999 999765322 122356666778888877655432211 111 2221 112222111 2222323
Q ss_pred hcCCCcEEEEE-ECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCCCCCCcCCCeEEEEeCCCccCceEecC
Q 023747 163 LNSHKDVLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSA 240 (278)
Q Consensus 163 ~~~~~~~~v~f-~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g 240 (278)
.+..+.+.+.| ..+. .--+..+-..+... .+.+..+-+.++ ...++++...|+.++|++|+.. + .+..
T Consensus 185 ~~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q-~-l~~~ 254 (606)
T KOG1731|consen 185 STTANYVAIVFETEPS-------DLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ-P-LWPS 254 (606)
T ss_pred ccccceeEEEEecCCc-------ccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc-c-cccc
Confidence 23344666666 3332 12344444555332 355555554444 5556899999999999999765 3 3445
Q ss_pred CCCHHHHHHHHHHHhccc
Q 023747 241 RSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 241 ~~~~~~l~~~i~~~~~~~ 258 (278)
..+.+...+-|.+.++-.
T Consensus 255 ~~s~~~y~~~I~~~lg~~ 272 (606)
T KOG1731|consen 255 SSSRSAYVKKIDDLLGDK 272 (606)
T ss_pred cccHHHHHHHHHHHhcCc
Confidence 566667777777777643
No 86
>PRK09381 trxA thioredoxin; Provisional
Probab=99.49 E-value=2.6e-13 Score=99.91 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=85.6
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCce
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 97 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Pt 97 (278)
++.+.+.++...+ .+.+++++|.||++| ++|+.+.|.|+++++++.+.+.|+.+|++.. +.++++|+|.++ ||
T Consensus 5 v~~~~~~~~~~~v--~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-Pt 78 (109)
T PRK09381 5 IIHLTDDSFDTDV--LKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN---PGTAPKYGIRGI-PT 78 (109)
T ss_pred ceeeChhhHHHHH--hcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC---hhHHHhCCCCcC-CE
Confidence 4455555555433 346778999999999 9999999999999999999899999999999 899999999999 99
Q ss_pred EEEEecCCcceeecCCCCCChHHHHHHHHHHh
Q 023747 98 VVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 98 l~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 129 (278)
+ .++..|. ..+.+.|..+.+.|.+|+...+
T Consensus 79 ~-~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 L-LLFKNGE-VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred E-EEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence 9 6666553 4556688899999999998764
No 87
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.3e-13 Score=109.99 Aligned_cols=105 Identities=19% Similarity=0.399 Sum_probs=86.9
Q ss_pred eEEE-cccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE
Q 023747 150 VQIV-VGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 150 v~~l-~~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~ 225 (278)
|..+ ++.+|...+... .+.++|.|||.||+||+...|+|..+++.|.+ .+|.+||+++. .. +.++|..+||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 4444 346777776444 67999999999999999999999999999974 89999999988 55 599999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHHhcccCC
Q 023747 226 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQ 260 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 260 (278)
+|.+|.++. .+. ..+...|.+.|.+++.....
T Consensus 80 ff~ng~kid--~~q-GAd~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 80 FFRNGVKID--QIQ-GADASGLEEKVAKYASTSAA 111 (288)
T ss_pred EEecCeEee--eec-CCCHHHHHHHHHHHhccCcc
Confidence 999998774 344 56778999999999876543
No 88
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.47 E-value=4.3e-13 Score=94.82 Aligned_cols=89 Identities=26% Similarity=0.633 Sum_probs=75.8
Q ss_pred chHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccC
Q 023747 157 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKAN 234 (278)
Q Consensus 157 ~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~ 234 (278)
+|.+.+.. +++++|+||++||++|..+.+.+.+++.. .. ++.++.+|++.+ ++ .++++.++|++++|++|+...
T Consensus 2 ~~~~~~~~-~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKS-AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP--KVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHH-CC--CceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 56666644 48999999999999999999999999988 33 799999999987 55 589999999999999987543
Q ss_pred ceEecCCCCHHHHHHHH
Q 023747 235 PIKVSARSSSKNIAAFI 251 (278)
Q Consensus 235 ~~~~~g~~~~~~l~~~i 251 (278)
.+.|..+.+.|..||
T Consensus 78 --~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 --RVVGADPKEELEEFL 92 (93)
T ss_pred --EEecCCCHHHHHHHh
Confidence 778888889999887
No 89
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.46 E-value=5.7e-13 Score=96.96 Aligned_cols=87 Identities=28% Similarity=0.512 Sum_probs=76.8
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCC--CCCceEEEEecCCcceeecCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE--ESKNTVVTAFDNKAISKFLLE 113 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~--~~~Ptl~~~~~~~~~~~~~~~ 113 (278)
+.++++.|+++| ++|+.+.|.+.++|+++++++.|+.+|+++. +.+++.|||. +. |++ .+++...+.+|.+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~---~~~~~~~~i~~~~~-P~~-~~~~~~~~~k~~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF---GRHLEYFGLKEEDL-PVI-AIINLSDGKKYLMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh---HHHHHHcCCChhhC-CEE-EEEecccccccCCC
Confidence 578999999999 8999999999999999999999999999998 8999999999 88 999 77776444567666
Q ss_pred CC-CChHHHHHHHHHH
Q 023747 114 SD-LTPSNIEEFCSRL 128 (278)
Q Consensus 114 g~-~~~~~i~~fi~~~ 128 (278)
+. .+.++|.+|+.++
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 55 5999999999875
No 90
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.46 E-value=6.7e-13 Score=96.87 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=75.7
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceee
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF 110 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~ 110 (278)
...++++|.||++| ++|+.+.|.|+++++.+++ .+.++.+||+.. +.++++|+|.++ ||+ .+++++. .+
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~I~~~-Pt~-~l~~~~~--~~ 85 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---SSIASEFGVRGY-PTI-KLLKGDL--AY 85 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---HhHHhhcCCccc-cEE-EEEcCCC--ce
Confidence 34678999999999 9999999999999999953 499999999998 899999999999 999 6666553 34
Q ss_pred cCCCCCChHHHHHHHHHH
Q 023747 111 LLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 111 ~~~g~~~~~~i~~fi~~~ 128 (278)
.+.|..+.+.|.+|++++
T Consensus 86 ~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 568999999999999874
No 91
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.45 E-value=3.1e-13 Score=98.40 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=79.0
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHHHHcCCCCCC
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLTLFGLEESK 95 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~--~v~f~~vd~~~~~~~~~l~~~~~i~~~~ 95 (278)
|..++.+++...+.. .+++++|+||++| ++|+.+.|.|+++++.+++ .+.|+.+||+.+ +++..+++.++
T Consensus 2 v~~l~~~~f~~~i~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~~~~- 74 (104)
T cd02995 2 VKVVVGKNFDEVVLD--SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFVVDGF- 74 (104)
T ss_pred eEEEchhhhHHHHhC--CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhccCCCC-
Confidence 344555555444433 3468999999999 9999999999999999987 599999999976 58889999999
Q ss_pred ceEEEEecCCc-ceeecCCCCCChHHHHHHH
Q 023747 96 NTVVTAFDNKA-ISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 96 Ptl~~~~~~~~-~~~~~~~g~~~~~~i~~fi 125 (278)
||+ .++..+. .....|.|..+.++|.+|+
T Consensus 75 Pt~-~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 75 PTI-LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CEE-EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999 6665554 3455679999999999885
No 92
>PLN02309 5'-adenylylsulfate reductase
Probab=99.43 E-value=4e-13 Score=121.05 Aligned_cols=111 Identities=16% Similarity=0.186 Sum_probs=94.0
Q ss_pred cCCcccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC-CcccchhHHH-H
Q 023747 13 LPKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA-DEDLAKPFLT-L 88 (278)
Q Consensus 13 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~-~~~~~~~l~~-~ 88 (278)
+.++..++.++..+++.++.....+++++|.||++| ++|+.+.|.|.+++.+|.+. +.|+.+||+ .. ..+|+ +
T Consensus 341 l~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~---~~la~~~ 417 (457)
T PLN02309 341 IFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ---KEFAKQE 417 (457)
T ss_pred ccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc---hHHHHhh
Confidence 556666788888888888877788899999999999 99999999999999999865 999999999 66 78887 5
Q ss_pred cCCCCCCceEEEEecCCcceeecCCC-CCChHHHHHHHHHH
Q 023747 89 FGLEESKNTVVTAFDNKAISKFLLES-DLTPSNIEEFCSRL 128 (278)
Q Consensus 89 ~~i~~~~Ptl~~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~ 128 (278)
|+|.++ ||| .+|..+......|.| .++.++|..|++.+
T Consensus 418 ~~I~~~-PTi-l~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 LQLGSF-PTI-LLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCcee-eEE-EEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999 999 666655444556775 69999999999864
No 93
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.43 E-value=5.4e-13 Score=120.28 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=89.9
Q ss_pred CcccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhH-HHHcCC
Q 023747 15 KSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPF-LTLFGL 91 (278)
Q Consensus 15 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~~~~~l-~~~~~i 91 (278)
++.-|+.++++|++.++.....+++++|.||++| ++|+.+.|.|+++|+++.+. +.|+.|||+.+. ..+ +++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence 4445788888899888766677889999999999 99999999999999999875 999999999762 245 478999
Q ss_pred CCCCceEEEEecCCcceeecCC-CCCChHHHHHHHHH
Q 023747 92 EESKNTVVTAFDNKAISKFLLE-SDLTPSNIEEFCSR 127 (278)
Q Consensus 92 ~~~~Ptl~~~~~~~~~~~~~~~-g~~~~~~i~~fi~~ 127 (278)
.++ ||| .+|..+......|. |.++.++|..|++.
T Consensus 427 ~~~-PTi-i~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSF-PTI-LFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred Ccc-ceE-EEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999 999 66665544455677 47999999999975
No 94
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.42 E-value=1.4e-12 Score=95.51 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=59.9
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
.+++++|.||++| ++|+.+.|.+++++.++.+.+.|++||.++. +.++++|+|.+. ||++++.+|.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~---~~la~~~~V~~i-PTf~~fk~G~ 79 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV---PDFNKMYELYDP-PTVMFFFRNK 79 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC---HHHHHHcCCCCC-CEEEEEECCE
Confidence 5678999999999 9999999999999999999899999999999 999999999999 9994444443
No 95
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.41 E-value=6.9e-13 Score=95.52 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=76.6
Q ss_pred eeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHh--cCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc
Q 023747 31 LKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 31 ~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~--~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
......+++++++||++| ++|+.+.+.|.++++.+ ++.+.|+.+||+.. ..++++|+|.++ |++ .++++++.
T Consensus 9 ~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~i~~~-Pt~-~~~~~~~~ 83 (101)
T cd02961 9 DELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN---NDLCSEYGVRGY-PTI-KLFPNGSK 83 (101)
T ss_pred HHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch---HHHHHhCCCCCC-CEE-EEEcCCCc
Confidence 344455558999999999 99999999999999999 57799999999998 899999999999 999 66665534
Q ss_pred eeecCCCCCChHHHHHHH
Q 023747 108 SKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 108 ~~~~~~g~~~~~~i~~fi 125 (278)
....|.|..+.+++.+|+
T Consensus 84 ~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 84 EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred ccccCCCCcCHHHHHhhC
Confidence 566678889999998874
No 96
>PRK10996 thioredoxin 2; Provisional
Probab=99.40 E-value=1.3e-12 Score=100.34 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=79.5
Q ss_pred eeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceee
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF 110 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~ 110 (278)
...+.+++++|.||++| ++|+.+.|.|.++++++.+.+.|+.+|++.. +.++++|+|.++ ||+ .++++|. ...
T Consensus 47 ~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~---~~l~~~~~V~~~-Ptl-ii~~~G~-~v~ 120 (139)
T PRK10996 47 KLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE---RELSARFRIRSI-PTI-MIFKNGQ-VVD 120 (139)
T ss_pred HHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC---HHHHHhcCCCcc-CEE-EEEECCE-EEE
Confidence 34456889999999999 9999999999999999998899999999998 899999999999 999 6666553 344
Q ss_pred cCCCCCChHHHHHHHHHH
Q 023747 111 LLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 111 ~~~g~~~~~~i~~fi~~~ 128 (278)
.+.|..+.+.+.+|+++.
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 568889999999999874
No 97
>PHA02278 thioredoxin-like protein
Probab=99.40 E-value=8.5e-13 Score=95.75 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=72.5
Q ss_pred eeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEecCCcc
Q 023747 30 LLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 30 ~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
+.+..+.+++++|.||++| ++|+.+.|.+++++.++.+.+.|..+|.+.+++ .+.++++|+|.+. ||+ .+|.+|..
T Consensus 7 ~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i-PT~-i~fk~G~~ 84 (103)
T PHA02278 7 LNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST-PVL-IGYKDGQL 84 (103)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc-cEE-EEEECCEE
Confidence 3444467889999999999 999999999999999877778899999996521 1579999999999 999 66655532
Q ss_pred eeecCCCCCChHHHHHH
Q 023747 108 SKFLLESDLTPSNIEEF 124 (278)
Q Consensus 108 ~~~~~~g~~~~~~i~~f 124 (278)
...+.|..+.+.+.++
T Consensus 85 -v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 85 -VKKYEDQVTPMQLQEL 100 (103)
T ss_pred -EEEEeCCCCHHHHHhh
Confidence 3334787888777665
No 98
>PTZ00062 glutaredoxin; Provisional
Probab=99.40 E-value=3.9e-12 Score=103.07 Aligned_cols=148 Identities=14% Similarity=0.267 Sum_probs=100.5
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc-eeecCCCC
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI-SKFLLESD 115 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~-~~~~~~g~ 115 (278)
+..+++|+++| ++|+.+.|.+.+++++|.+ +.|+.||.+ |+|.+. ||+ .+|.++.. .++ . +
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v-Ptf-v~~~~g~~i~r~--~-G 80 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY-GVF-EFYQNSQLINSL--E-G 80 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc-eEE-EEEECCEEEeee--e-C
Confidence 67889999999 9999999999999999976 999999855 899999 999 55554433 233 3 4
Q ss_pred CChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCcEEEEEE----CCCChhHHHHHHHHHHH
Q 023747 116 LTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVY----TPWCVTCETTSKQIEKL 191 (278)
Q Consensus 116 ~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~~v~f~----~~~c~~c~~~~~~~~~~ 191 (278)
.++.++..++..+..... .. ...+-+.+++ + .++++|+-- .|+|++|+.+...+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~----------------~~-~~~~~v~~li-~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 81 CNTSTLVSFIRGWAQKGS----------------SE-DTVEKIERLI-R-NHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred CCHHHHHHHHHHHcCCCC----------------HH-HHHHHHHHHH-h-cCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 568899999988753210 00 0112333333 2 333443332 37999999887666643
Q ss_pred HHHhcCCCceEEEEEeCCCC-CCC----CC-CCcCCCeEEEEeCCC
Q 023747 192 AKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGD 231 (278)
Q Consensus 192 a~~~~~~~~~~~~~vd~~~~-~~~----~~-~i~~~Ptl~~f~~g~ 231 (278)
++.+..+|++.. +.. ++ +...+|.+++ +|+
T Consensus 142 --------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~ 177 (204)
T PTZ00062 142 --------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGE 177 (204)
T ss_pred --------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 466777888766 332 22 5667888875 554
No 99
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.40 E-value=2.7e-12 Score=96.85 Aligned_cols=95 Identities=17% Similarity=0.310 Sum_probs=74.3
Q ss_pred hHHHhhcCC-CcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCceEEEEEeCCCC--------------CC-CCCCC
Q 023747 158 FDDLVLNSH-KDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN--------------EH-PKLQV 218 (278)
Q Consensus 158 ~~~~i~~~~-~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~~~~~~vd~~~~--------------~~-~~~~i 218 (278)
+.+.. +++ ++++|.||++||++|+.+.+.+. .+...+++ ++.+..+|++.. ++ .+|++
T Consensus 6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34433 456 99999999999999999999885 56666664 688999998763 33 37899
Q ss_pred cCCCeEEEEeCC-CccCceEecCCCCHHHHHHHHHHHhc
Q 023747 219 EEYPTLLFYPAG-DKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 219 ~~~Ptl~~f~~g-~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
.++|++++|.++ ++. ..++.|..+.+.+.++|+..++
T Consensus 83 ~~~Pt~~~~~~~gg~~-~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 83 RFTPTVIFLDPEGGKE-IARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred ccccEEEEEcCCCCce-eEEecCCCCHHHHHHHHHHHHh
Confidence 999999999765 343 3378899999999999987654
No 100
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.39 E-value=2.8e-12 Score=98.81 Aligned_cols=101 Identities=7% Similarity=0.075 Sum_probs=82.7
Q ss_pred eeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcce
Q 023747 30 LLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS 108 (278)
Q Consensus 30 ~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~ 108 (278)
+......+++++|.||++| ++|+.+.|.+.++++++.+.+.|+.||.+.... ..++++|+|.++ ||+ .+++.++..
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-~~~~~~~~V~~i-Pt~-v~~~~~G~~ 89 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-LPEIDRYRVDGI-PHF-VFLDREGNE 89 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-HHHHHHcCCCCC-CEE-EEECCCCCE
Confidence 3344567789999999999 999999999999999998878888888775422 589999999999 999 777533344
Q ss_pred eecCCCCCChHHHHHHHHHHhcCcc
Q 023747 109 KFLLESDLTPSNIEEFCSRLLHGTL 133 (278)
Q Consensus 109 ~~~~~g~~~~~~i~~fi~~~~~~~~ 133 (278)
...+.|..+.+++.++++..+.+.-
T Consensus 90 v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 90 EGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 5556888999999999999987663
No 101
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.38 E-value=2.1e-12 Score=93.89 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=72.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCc--CCCeEEEEeC--CCccCceEec
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE--EYPTLLFYPA--GDKANPIKVS 239 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~--~~Ptl~~f~~--g~~~~~~~~~ 239 (278)
++++++.|+++||++|..+.+.++++|+++++ ++.|+.+|++++ .+ ..+++. ++|++++++. |.+. .+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~---~~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY---LMP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc---CCC
Confidence 67999999999999999999999999999997 799999999997 55 588999 9999999988 4432 344
Q ss_pred -CCCCHHHHHHHHHHH
Q 023747 240 -ARSSSKNIAAFIKEQ 254 (278)
Q Consensus 240 -g~~~~~~l~~~i~~~ 254 (278)
|..+.++|.+||.+.
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 446999999999864
No 102
>PTZ00062 glutaredoxin; Provisional
Probab=99.38 E-value=3.3e-12 Score=103.47 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=79.7
Q ss_pred cccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCcc
Q 023747 154 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKA 233 (278)
Q Consensus 154 ~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~ 233 (278)
+.+++.+.+..+.+.++++|+|+||++|+.+.+.+.++++.+. ++.|+.||.+ |+|..+|++++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc------cCcccceEEEEEECCEEE
Confidence 4577888775555789999999999999999999999999996 5999999987 889999999999999987
Q ss_pred CceEecCCCCHHHHHHHHHHHhcccC
Q 023747 234 NPIKVSARSSSKNIAAFIKEQLKEKD 259 (278)
Q Consensus 234 ~~~~~~g~~~~~~l~~~i~~~~~~~~ 259 (278)
+ ++.|. +...|..++.++.++..
T Consensus 76 ~--r~~G~-~~~~~~~~~~~~~~~~~ 98 (204)
T PTZ00062 76 N--SLEGC-NTSTLVSFIRGWAQKGS 98 (204)
T ss_pred e--eeeCC-CHHHHHHHHHHHcCCCC
Confidence 6 66654 57788888888877544
No 103
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.37 E-value=1.7e-12 Score=94.48 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=78.5
Q ss_pred cccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCCcccchhHHHHcCCCCCCc
Q 023747 20 ISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDLAKPFLTLFGLEESKN 96 (278)
Q Consensus 20 v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~--~~v~f~~vd~~~~~~~~~l~~~~~i~~~~P 96 (278)
+.+++.+++.. .+.+.+++|.||++| ++|+.+.|.+.++++.+. +.+.++.+||+...+ ..++++++|.++ |
T Consensus 3 ~~l~~~~~~~~---~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~~i~~~-P 77 (104)
T cd02997 3 VHLTDEDFRKF---LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALKEEYNVKGF-P 77 (104)
T ss_pred EEechHhHHHH---HhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHHHhCCCccc-c
Confidence 33444444433 345568999999999 999999999999999997 669999999998212 899999999999 9
Q ss_pred eEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 97 TVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 97 tl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
|+ .++.++. ....+.|..+.+++.+|+
T Consensus 78 t~-~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 78 TF-KYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EE-EEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 99 6666554 355678999999998875
No 104
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.37 E-value=4e-12 Score=92.47 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=77.4
Q ss_pred cccCCCCceeeeeeeecCCceEEEEEeCc---cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCc
Q 023747 20 ISNLPTTSLELLKVSQIDTLDMVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN 96 (278)
Q Consensus 20 v~~~~~~~~~~~~~~~~~~~~~v~F~~~~---~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~P 96 (278)
-.++..|+.... ..+...++.|+++| ++|..+.|.+.+++++|.+.+.|+.+|++++ +.++.+|+|.+. |
T Consensus 13 ~~~~~~~~~~~~---~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~---~~la~~f~V~sI-P 85 (111)
T cd02965 13 PRVDAATLDDWL---AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE---QALAARFGVLRT-P 85 (111)
T ss_pred cccccccHHHHH---hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC---HHHHHHcCCCcC-C
Confidence 346677776544 77788999999994 8999999999999999999999999999999 999999999999 9
Q ss_pred eEEEEecCCcceeecCCCCCChHHHH
Q 023747 97 TVVTAFDNKAISKFLLESDLTPSNIE 122 (278)
Q Consensus 97 tl~~~~~~~~~~~~~~~g~~~~~~i~ 122 (278)
|+ .+|.+|. ....+.|..+.+++.
T Consensus 86 Tl-i~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 86 AL-LFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred EE-EEEECCE-EEEEEeCccCHHHHh
Confidence 99 5555443 333457877777664
No 105
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.36 E-value=1e-11 Score=94.55 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=77.7
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.+++++|.||++| ++|+.+.|.++++|+++.+.+.|+.||.++. +++++.|+|.+. |+++.+|.++....-...|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~---~dla~~y~I~~~-~t~~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV---PDFNTMYELYDP-CTVMFFFRNKHIMIDLGTG 97 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC---HHHHHHcCccCC-CcEEEEEECCeEEEEEecc
Confidence 6778999999999 9999999999999999999999999999999 999999999977 7774577766533333455
Q ss_pred --------CCChHHHHHHHHHHhcCc
Q 023747 115 --------DLTPSNIEEFCSRLLHGT 132 (278)
Q Consensus 115 --------~~~~~~i~~fi~~~~~~~ 132 (278)
..+.+++.+-++.++.|.
T Consensus 98 ~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 98 NNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred cccccccccCCHHHHHHHHHHHHHHH
Confidence 467888888888876553
No 106
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.35 E-value=3.4e-12 Score=92.82 Aligned_cols=88 Identities=10% Similarity=0.157 Sum_probs=71.8
Q ss_pred eeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCccee
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISK 109 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~ 109 (278)
...+.+++++|+||++| ++|+.+.|.+++++..+++. +.|+.+|++ . .+++++|+|.++ ||+ .++.+|.. .
T Consensus 12 ~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~~~~~~~v~~~-Pt~-~~~~~g~~-~ 84 (102)
T cd02948 12 ELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---IDTLKRYRGKCE-PTF-LFYKNGEL-V 84 (102)
T ss_pred HHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HHHHHHcCCCcC-cEE-EEEECCEE-E
Confidence 34456889999999999 99999999999999999864 899999999 5 689999999999 999 66665532 2
Q ss_pred ecCCCCCChHHHHHHHHH
Q 023747 110 FLLESDLTPSNIEEFCSR 127 (278)
Q Consensus 110 ~~~~g~~~~~~i~~fi~~ 127 (278)
....| .+.+.+.+++++
T Consensus 85 ~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 85 AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEec-CChHHHHHHHhh
Confidence 33345 588888888865
No 107
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.35 E-value=1.2e-11 Score=89.26 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=75.4
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.+++++++||++| ++|+.+.+.++++++.+.+.+.|+.+|++.. ..++++|+|.++ |++ .+++.+. ....+.|
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~~-P~~-~~~~~g~-~~~~~~g 86 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN---PDIAAKYGIRSI-PTL-LLFKNGK-EVDRSVG 86 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC---HHHHHHcCCCcC-CEE-EEEeCCc-EeeeecC
Confidence 3568999999999 9999999999999999998899999999998 899999999999 999 5555553 3344578
Q ss_pred CCChHHHHHHHHHH
Q 023747 115 DLTPSNIEEFCSRL 128 (278)
Q Consensus 115 ~~~~~~i~~fi~~~ 128 (278)
..+.+.+.+|+++.
T Consensus 87 ~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 87 ALPKAALKQLINKN 100 (101)
T ss_pred CCCHHHHHHHHHhh
Confidence 88999999999864
No 108
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.1e-12 Score=90.76 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=67.0
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.++++++.||++| ++|+.+.|.+.++|.+|.+ +.|.++|+++. ..++++++|... ||+ .++.+|... -.+-|
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~---~~~~~~~~V~~~-PTf-~f~k~g~~~-~~~vG 92 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDEL---EEVAKEFNVKAM-PTF-VFYKGGEEV-DEVVG 92 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccC---HhHHHhcCceEe-eEE-EEEECCEEE-EEEec
Confidence 3688999999999 9999999999999999999 99999999995 899999999999 999 555544322 22233
Q ss_pred CCChHHHHHHHHH
Q 023747 115 DLTPSNIEEFCSR 127 (278)
Q Consensus 115 ~~~~~~i~~fi~~ 127 (278)
.+.+.+.+.+..
T Consensus 93 -a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 -ANKAELEKKIAK 104 (106)
T ss_pred -CCHHHHHHHHHh
Confidence 344466665543
No 109
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.30 E-value=3.3e-11 Score=87.72 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=67.0
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.+++++|.||++| ++|+.+.|.++++++++ +.+.|+.||+++......++++|+|.++ ||+ .++.+|. ....+.|
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~-Pt~-~~~~~G~-~v~~~~G 89 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV-PHF-LFYKDGE-KIHEEEG 89 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC-CEE-EEEeCCe-EEEEEeC
Confidence 3678999999999 99999999999999999 5599999999876222379999999999 999 5555443 2444466
Q ss_pred CCChHHHHHHHH
Q 023747 115 DLTPSNIEEFCS 126 (278)
Q Consensus 115 ~~~~~~i~~fi~ 126 (278)
...+++.+-+.
T Consensus 90 -~~~~~l~~~~~ 100 (103)
T cd02985 90 -IGPDELIGDVL 100 (103)
T ss_pred -CCHHHHHHHHH
Confidence 45566665543
No 110
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.29 E-value=2.1e-11 Score=84.71 Aligned_cols=78 Identities=17% Similarity=0.378 Sum_probs=67.2
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHH
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN 246 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~ 246 (278)
.+..||++||++|+.+.+.+++++..+.. .+.+..||++.+ +. .++++.++|++++ +|+ .++.|..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~----~~~~G~~~~~~ 73 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD----VEFIGAPTKEE 73 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE----EEEecCCCHHH
Confidence 46789999999999999999999999976 689999999877 44 5899999999986 554 26889999999
Q ss_pred HHHHHHHH
Q 023747 247 IAAFIKEQ 254 (278)
Q Consensus 247 l~~~i~~~ 254 (278)
+.++|.+.
T Consensus 74 l~~~l~~~ 81 (82)
T TIGR00411 74 LVEAIKKR 81 (82)
T ss_pred HHHHHHhh
Confidence 99998764
No 111
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.29 E-value=1e-11 Score=92.03 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=64.3
Q ss_pred cccchHHHhhcC-CCcEEEEEEC-------CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CC-CCC
Q 023747 154 VGKTFDDLVLNS-HKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EH-PKL 216 (278)
Q Consensus 154 ~~~~~~~~i~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--------~~-~~~ 216 (278)
+.++|.+.+... +++++|.||| +||++|+.+.|.+++++..+.+ ++.|+.||+++. ++ .++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 346777777654 5799999999 9999999999999999999985 589999999763 44 477
Q ss_pred CCc-CCCeEEEEeCCCc
Q 023747 217 QVE-EYPTLLFYPAGDK 232 (278)
Q Consensus 217 ~i~-~~Ptl~~f~~g~~ 232 (278)
+|. ++||+++|++|+.
T Consensus 86 ~I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 86 KLTTGVPTLLRWKTPQR 102 (119)
T ss_pred CcccCCCEEEEEcCCce
Confidence 888 9999999977754
No 112
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.29 E-value=2.3e-11 Score=88.71 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=74.3
Q ss_pred eeecCCceEEEEEeCc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEecC-Cc
Q 023747 33 VSQIDTLDMVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDN-KA 106 (278)
Q Consensus 33 ~~~~~~~~~v~F~~~~-~~c~~~~~~~---~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~~-~~ 106 (278)
..+.+++++|.||++| ++|+.+.+.+ .+++..+++.+.++.+|++..+. ...++++|+|.++ ||+ .+++. ++
T Consensus 7 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~-Pti-~~~~~~~g 84 (104)
T cd02953 7 ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP-PTY-LFYGPGGE 84 (104)
T ss_pred HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC-CEE-EEECCCCC
Confidence 3456788999999999 9999999988 68999998779999999986321 1789999999999 999 77764 33
Q ss_pred ceeecCCCCCChHHHHHHH
Q 023747 107 ISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 107 ~~~~~~~g~~~~~~i~~fi 125 (278)
.....+.|..+.+++.+++
T Consensus 85 ~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 85 PEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCcccccccCHHHHHHHh
Confidence 3456678899999988876
No 113
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.28 E-value=1.4e-11 Score=91.32 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=74.4
Q ss_pred cccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHcCCCC
Q 023747 18 TLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLFGLEE 93 (278)
Q Consensus 18 ~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~~i~~ 93 (278)
+++.+++.++...+.. .+++++|.||++| ++|+.+.|.|+++++++++ .+.|+.+||+...+ ..+|++|+|.+
T Consensus 2 ~v~~l~~~~f~~~i~~--~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALLG--SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALCRDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHhc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHHHhCCCCC
Confidence 3566777777665543 4468999999999 9999999999999998863 59999999975432 68999999999
Q ss_pred CCceEEEEecCCccee---ecCCCC-CChHHHH
Q 023747 94 SKNTVVTAFDNKAISK---FLLESD-LTPSNIE 122 (278)
Q Consensus 94 ~~Ptl~~~~~~~~~~~---~~~~g~-~~~~~i~ 122 (278)
+ ||+ .+|..+.... -.+.|. +..+++.
T Consensus 79 ~-Pt~-~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 79 Y-PTL-RYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred C-CEE-EEECCCCccCCCCCcccCCccCHHHHH
Confidence 9 999 6666554221 234555 5555553
No 114
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.28 E-value=2.1e-10 Score=107.68 Aligned_cols=184 Identities=14% Similarity=0.170 Sum_probs=139.6
Q ss_pred CCce-EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEec-CCcceeecCC
Q 023747 37 DTLD-MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-NKAISKFLLE 113 (278)
Q Consensus 37 ~~~~-~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~-~~~~~~~~~~ 113 (278)
.+++ ++.|+.+. ..|.++...+++++ .+.+++.+...|...+ ..++++|++... |++ .+.+ ++......|.
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~---~~~~~~~~v~~~-P~~-~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEE---PESETLPKITKL-PTV-ALLDDDGNYTGLKFH 438 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccc---hhhHhhcCCCcC-CEE-EEEeCCCcccceEEE
Confidence 3454 55566656 59999999999999 5567799988898877 899999999988 999 7764 3322334558
Q ss_pred CCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCcE-EEEEECCCChhHHHHHHHHHHHH
Q 023747 114 SDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKDV-LLEVYTPWCVTCETTSKQIEKLA 192 (278)
Q Consensus 114 g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~-~v~f~~~~c~~c~~~~~~~~~~a 192 (278)
|-..-.++..|+..+++-. +.-..++.+..+ .+..-++++ +-.|.+++|++|......+++++
T Consensus 439 g~P~G~Ef~s~i~~i~~~~---------------~~~~~l~~~~~~-~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~ 502 (555)
T TIGR03143 439 GVPSGHELNSFILALYNAA---------------GPGQPLGEELLE-KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIA 502 (555)
T ss_pred ecCccHhHHHHHHHHHHhc---------------CCCCCCCHHHHH-HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHH
Confidence 8888999999999987522 122344444444 444545665 55678999999999988898888
Q ss_pred HHhcCCCceEEEEEeCCCC-CCC-CCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHH
Q 023747 193 KHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 193 ~~~~~~~~~~~~~vd~~~~-~~~-~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
.... ++..-.+|.... ++. +|+|.++|++++ +|+. .+.|..+.+++..||
T Consensus 503 ~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 503 SLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ----VYFGKKTIEEMLELI 554 (555)
T ss_pred HhCC---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE----EEeeCCCHHHHHHhh
Confidence 8865 488888998888 774 999999999998 5542 578988999999887
No 115
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.28 E-value=1.4e-11 Score=95.48 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=65.9
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCC---
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEE--- 93 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~--- 93 (278)
++.+++++++..+.. ..+.+++|.||++| ++|+.+.|.|+++++++.+ .+.|++||+++. ++++++|+|.+
T Consensus 30 v~~l~~~~f~~~l~~-~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~---~~la~~~~V~~~~~ 105 (152)
T cd02962 30 IKYFTPKTLEEELER-DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF---PNVAEKFRVSTSPL 105 (152)
T ss_pred cEEcCHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC---HHHHHHcCceecCC
Confidence 455666665544322 23568999999999 9999999999999999985 499999999999 99999999988
Q ss_pred ---CCceEEEEecCC
Q 023747 94 ---SKNTVVTAFDNK 105 (278)
Q Consensus 94 ---~~Ptl~~~~~~~ 105 (278)
+ ||+ .+|.+|
T Consensus 106 v~~~-PT~-ilf~~G 118 (152)
T cd02962 106 SKQL-PTI-ILFQGG 118 (152)
T ss_pred cCCC-CEE-EEEECC
Confidence 8 999 555444
No 116
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.27 E-value=1.3e-11 Score=91.44 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=64.0
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCce
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNT 97 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Pt 97 (278)
++.+++.++...+...+.+.+++|+||++| ++|+.+.|.++++|.++.+ +.|++||+++. .++++|+|.++ ||
T Consensus 6 v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~i~~~-Pt 79 (113)
T cd02957 6 VREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLDIKVL-PT 79 (113)
T ss_pred EEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcCCCcC-CE
Confidence 444555555555444333578999999999 9999999999999999986 89999999865 79999999999 99
Q ss_pred EEEEecCC
Q 023747 98 VVTAFDNK 105 (278)
Q Consensus 98 l~~~~~~~ 105 (278)
+ .+|.+|
T Consensus 80 ~-~~f~~G 86 (113)
T cd02957 80 L-LVYKNG 86 (113)
T ss_pred E-EEEECC
Confidence 9 555444
No 117
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.27 E-value=4.5e-11 Score=86.02 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=75.5
Q ss_pred eecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 112 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~ 112 (278)
.+.+++++++|+++| +.|+.+.|.++++++++.+.+.+..+|++.. ++++++++|.++ |++ .+++++. ....+
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~---~~l~~~~~v~~v-Pt~-~i~~~g~-~v~~~ 83 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED---QEIAEAAGIMGT-PTV-QFFKDKE-LVKEI 83 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC---HHHHHHCCCeec-cEE-EEEECCe-EEEEE
Confidence 346788999999999 9999999999999999988899999999988 899999999999 999 6666553 45556
Q ss_pred CCCCChHHHHHHHH
Q 023747 113 ESDLTPSNIEEFCS 126 (278)
Q Consensus 113 ~g~~~~~~i~~fi~ 126 (278)
.|..+.+++.+|++
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 88899999888863
No 118
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.27 E-value=2.5e-11 Score=89.81 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=70.5
Q ss_pred eeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc
Q 023747 29 ELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 29 ~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
++.+..+.+.+++|+||++| ++|+.+.|.++++++++.+ +.|..||.+.. +.++++|+|.+. ||++.+.+|...
T Consensus 14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~---~~l~~~~~v~~v-Pt~l~fk~G~~v 88 (113)
T cd02989 14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKA---PFLVEKLNIKVL-PTVILFKNGKTV 88 (113)
T ss_pred HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccC---HHHHHHCCCccC-CEEEEEECCEEE
Confidence 33444456789999999999 9999999999999999986 89999999999 899999999999 999444444322
Q ss_pred eee----cCC--CCCChHHHHHHH
Q 023747 108 SKF----LLE--SDLTPSNIEEFC 125 (278)
Q Consensus 108 ~~~----~~~--g~~~~~~i~~fi 125 (278)
.++ .+. ++.+.+++..|+
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 89 DRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECccccCCCCCCCHHHHHHHh
Confidence 222 111 246667776665
No 119
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.26 E-value=4.9e-11 Score=88.31 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=75.6
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCC-cceeecC
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK-AISKFLL 112 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~-~~~~~~~ 112 (278)
..+..++|+|+++| ++|+.+.|.+++++..+ +.+.|..+|.+.. +.++++|+|.+. ||+ .+++++ ......+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~---~~l~~~~~v~~v-Pt~-~i~~~g~~~~~~~~ 93 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDED---KEKAEKYGVERV-PTT-IFLQDGGKDGGIRY 93 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcC---HHHHHHcCCCcC-CEE-EEEeCCeecceEEE
Confidence 45666888899999 99999999999999987 6699999999988 999999999999 999 666543 2233345
Q ss_pred CCCCChHHHHHHHHHHhc
Q 023747 113 ESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 113 ~g~~~~~~i~~fi~~~~~ 130 (278)
.|..+.+++.+|++.+++
T Consensus 94 ~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EecCchHHHHHHHHHHHh
Confidence 788889999999998864
No 120
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.26 E-value=2.1e-11 Score=90.80 Aligned_cols=94 Identities=16% Similarity=0.310 Sum_probs=65.2
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcC--CCeEEEEe-CCCccC-ceE
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEE--YPTLLFYP-AGDKAN-PIK 237 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~--~Ptl~~f~-~g~~~~-~~~ 237 (278)
...+++++|.||++||++|+.+.|.+.+.+.......++..+.+|.+.... ..|++.+ +|++++|. +|+..+ .+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 456899999999999999999999999987765432244444444333333 5777876 99999995 777654 224
Q ss_pred ecCCCCHHHHHHHHHHHhc
Q 023747 238 VSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 238 ~~g~~~~~~l~~~i~~~~~ 256 (278)
..|..+.+.+...|..-.+
T Consensus 96 ~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 96 KKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCccccccCCCHHHHHh
Confidence 4566666666666655444
No 121
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.25 E-value=1.3e-10 Score=84.61 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=72.1
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.+++++|.|+++| ++|+.+.|.+.++|.+|++.+.|..||.++. +++++.|+|... ||++ +|.++......+..
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev---~dva~~y~I~am-Ptfv-ffkngkh~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV---PVYTQYFDISYI-PSTI-FFFNGQHMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc---HHHHHhcCceeC-cEEE-EEECCcEEEEecCC
Confidence 6789999999999 9999999999999999987799999999999 999999999998 9996 44444444444421
Q ss_pred --------C-CChHHHHHHHHHHh
Q 023747 115 --------D-LTPSNIEEFCSRLL 129 (278)
Q Consensus 115 --------~-~~~~~i~~fi~~~~ 129 (278)
. .+.+++++-++-+.
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHH
Confidence 1 34577777766544
No 122
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=5.9e-12 Score=113.04 Aligned_cols=117 Identities=24% Similarity=0.430 Sum_probs=91.7
Q ss_pred CCCCCCCCCCCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCC---CCC
Q 023747 139 SQPIPDNTNANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN---EHP 214 (278)
Q Consensus 139 s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~-~~~~~~vd~~~~---~~~ 214 (278)
+++.-..+.++|..++.++|+..+....+..+|.||++||++|+.+.|.|+++|+.+.... -|.++.|||-.. .++
T Consensus 30 ~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC 109 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC 109 (606)
T ss_pred CCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH
Confidence 4444444668899999999999999988899999999999999999999999999998765 489999999766 334
Q ss_pred -CCCCcCCCeEEEEeCCCccCc--eEecCCCCHHHHHHHHHHHh
Q 023747 215 -KLQVEEYPTLLFYPAGDKANP--IKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 215 -~~~i~~~Ptl~~f~~g~~~~~--~~~~g~~~~~~l~~~i~~~~ 255 (278)
+++|+.+|++.+|+.+-..++ -.+.|.....++...+.+.+
T Consensus 110 Ref~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred hhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 899999999999977633211 13455555566666655444
No 123
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.23 E-value=3.8e-11 Score=99.21 Aligned_cols=91 Identities=22% Similarity=0.346 Sum_probs=73.3
Q ss_pred CCcEEEEEEC---CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecC
Q 023747 166 HKDVLLEVYT---PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSA 240 (278)
Q Consensus 166 ~~~~~v~f~~---~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g 240 (278)
+...++.|++ +||++|+.+.|.+++++..+.+. .+.++.+|.+.+ ++ .+|+|.++||+++|++|+.. ..++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~-~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~-~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKL-KLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDG-GIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCc-eEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeee-EEEEee
Confidence 3445667888 99999999999999999998532 355666666666 55 59999999999999998864 347899
Q ss_pred CCCHHHHHHHHHHHhccc
Q 023747 241 RSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 241 ~~~~~~l~~~i~~~~~~~ 258 (278)
..+.+.+..||...++..
T Consensus 97 ~~~~~~l~~~i~~~~~~~ 114 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRVS 114 (215)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 999999999999887643
No 124
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.19 E-value=5.3e-11 Score=85.49 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
+++++|.||++| ++|+.+.|.|++++.++.+.+.|..+|++.. +.++++|+|.++ ||+ .++.+|.. ...+.|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~---~~~~~~~~i~~~-Pt~-~~~~~g~~-~~~~~g- 86 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL---PEISEKFEITAV-PTF-VFFRNGTI-VDRVSG- 86 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC---HHHHHhcCCccc-cEE-EEEECCEE-EEEEeC-
Confidence 588999999999 9999999999999999877799999999988 899999999999 999 66665533 222233
Q ss_pred CChHHHHHHH
Q 023747 116 LTPSNIEEFC 125 (278)
Q Consensus 116 ~~~~~i~~fi 125 (278)
.+.++|.+.+
T Consensus 87 ~~~~~l~~~~ 96 (97)
T cd02984 87 ADPKELAKKV 96 (97)
T ss_pred CCHHHHHHhh
Confidence 4566666554
No 125
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.16 E-value=2.6e-10 Score=90.88 Aligned_cols=105 Identities=14% Similarity=0.197 Sum_probs=77.3
Q ss_pred ccccccCC-CCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCC
Q 023747 17 CTLISNLP-TTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 94 (278)
Q Consensus 17 ~~~v~~~~-~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~ 94 (278)
..++.+++ .++...+.......+++|.||++| ++|+.+.|.+.++|.+|.. +.|++||++.. .++.+|+|.+.
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~----~l~~~f~v~~v 136 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT----GASDEFDTDAL 136 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch----hhHHhCCCCCC
Confidence 34666665 566555544334458999999999 9999999999999999975 99999999865 69999999999
Q ss_pred CceEEEEecCCcceeec-----CCCCCChHHHHHHHHH
Q 023747 95 KNTVVTAFDNKAISKFL-----LESDLTPSNIEEFCSR 127 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~-----~~g~~~~~~i~~fi~~ 127 (278)
|||+.|.+|.....+. .....+.+.|..|+.+
T Consensus 137 -PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 137 -PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred -CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9994444443222221 1124778888777765
No 126
>PTZ00051 thioredoxin; Provisional
Probab=99.13 E-value=1.4e-10 Score=83.56 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=67.3
Q ss_pred eeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcce
Q 023747 30 LLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAIS 108 (278)
Q Consensus 30 ~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~ 108 (278)
+....+.+.+++++||++| ++|+.+.|.++++++++.+ +.|+.+|++.. ..++++|+|.++ ||+ .++..|..
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~---~~~~~~~~v~~~-Pt~-~~~~~g~~- 83 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDEL---SEVAEKENITSM-PTF-KVFKNGSV- 83 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcch---HHHHHHCCCcee-eEE-EEEeCCeE-
Confidence 3344566789999999999 9999999999999999876 99999999988 899999999999 999 55554432
Q ss_pred eecCCCCCChHHHH
Q 023747 109 KFLLESDLTPSNIE 122 (278)
Q Consensus 109 ~~~~~g~~~~~~i~ 122 (278)
...+.|. ..++|.
T Consensus 84 ~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 84 VDTLLGA-NDEALK 96 (98)
T ss_pred EEEEeCC-CHHHhh
Confidence 3334553 444443
No 127
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.11 E-value=1.5e-10 Score=79.31 Aligned_cols=72 Identities=19% Similarity=0.395 Sum_probs=57.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCccCceEecCC-CCHHHHHH
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKNIAA 249 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~-~~~~~l~~ 249 (278)
|.||++||++|+.+.|.+++++.++.. ++.+..+| +..+..+|++.++|++++ +|+. .+.|. .+.+.+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~----~~~G~~~~~~~l~~ 73 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL----VIMGKIPSKEEIKE 73 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE----EEEeccCCHHHHHH
Confidence 789999999999999999999999976 68888887 222446899999999999 6653 36774 45577777
Q ss_pred HH
Q 023747 250 FI 251 (278)
Q Consensus 250 ~i 251 (278)
++
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 76
No 128
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.11 E-value=4.2e-10 Score=79.28 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=71.1
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCC
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLE 113 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~ 113 (278)
....+++++|+++| +.|..+.+.++++++. .+.+.|+.+|++.. ..++++|++.++ |++ .++..+. ....+.
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~---~~~~~~~~v~~~-P~~-~~~~~g~-~~~~~~ 80 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN---PELAEEYGVRSI-PTF-LFFKNGK-EVDRVV 80 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCC---hhHHHhcCcccc-cEE-EEEECCE-EEEEEe
Confidence 34478999999999 9999999999999999 56699999999998 899999999999 999 5665553 344557
Q ss_pred CCCChHHHHHHH
Q 023747 114 SDLTPSNIEEFC 125 (278)
Q Consensus 114 g~~~~~~i~~fi 125 (278)
|..+.+.|.+|+
T Consensus 81 g~~~~~~l~~~i 92 (93)
T cd02947 81 GADPKEELEEFL 92 (93)
T ss_pred cCCCHHHHHHHh
Confidence 778888888876
No 129
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.09 E-value=1.8e-09 Score=74.89 Aligned_cols=79 Identities=6% Similarity=0.105 Sum_probs=68.2
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCCh
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 118 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~ 118 (278)
.+..|+++| ++|+.+.|.+++++..+++.+.+..||.++. +++++++|+.++ ||+ .+ +++ . .+.|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~---~~~~~~~~v~~v-Pt~-~~-~g~--~--~~~G~~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN---PQKAMEYGIMAV-PAI-VI-NGD--V--EFIGAPTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC---HHHHHHcCCccC-CEE-EE-CCE--E--EEecCCCH
Confidence 467899999 9999999999999999988899999999988 899999999999 999 44 432 2 34788899
Q ss_pred HHHHHHHHHH
Q 023747 119 SNIEEFCSRL 128 (278)
Q Consensus 119 ~~i~~fi~~~ 128 (278)
+++.++++..
T Consensus 72 ~~l~~~l~~~ 81 (82)
T TIGR00411 72 EELVEAIKKR 81 (82)
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 130
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.06 E-value=1.5e-09 Score=81.83 Aligned_cols=96 Identities=9% Similarity=0.083 Sum_probs=77.0
Q ss_pred eecC-CceEEEEEeCc-cchHHHHHHHH---HHHHHhcCceEEEEEeCCCcc----------cchhHHHHcCCCCCCceE
Q 023747 34 SQID-TLDMVYVFAKA-DDLKSLLEPLE---DIARNFKGKIMFTAVDIADED----------LAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 34 ~~~~-~~~~v~F~~~~-~~c~~~~~~~~---~la~~~~~~v~f~~vd~~~~~----------~~~~l~~~~~i~~~~Ptl 98 (278)
.... ++++|.|+++| ++|+.+.+.+. ++...+++.+.+..+|.+... ....++.+|+|.++ ||+
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~-Pt~ 88 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT-PTV 88 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc-cEE
Confidence 3445 79999999999 99999999885 677777777889999987531 11589999999999 999
Q ss_pred EEEecCC-cceeecCCCCCChHHHHHHHHHHhcC
Q 023747 99 VTAFDNK-AISKFLLESDLTPSNIEEFCSRLLHG 131 (278)
Q Consensus 99 ~~~~~~~-~~~~~~~~g~~~~~~i~~fi~~~~~~ 131 (278)
.+++++ +.....+.|..+.+.+.++++.++++
T Consensus 89 -~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 89 -IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred -EEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 777765 44555678889999999999998754
No 131
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.05 E-value=1.2e-09 Score=102.57 Aligned_cols=103 Identities=24% Similarity=0.480 Sum_probs=79.4
Q ss_pred CeEEE-cccchHHHhhc---CCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCceEEEEEeCCCC-----CC-CC
Q 023747 149 NVQIV-VGKTFDDLVLN---SHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASAN-----EH-PK 215 (278)
Q Consensus 149 ~v~~l-~~~~~~~~i~~---~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~~~~~~vd~~~~-----~~-~~ 215 (278)
..+.+ +.+++++.+.. ++++++|.||++||++|+.+.+.. .++.+.++ ++.+.++|++++ ++ .+
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~ 529 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKH 529 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHH
Confidence 34455 34677776643 368999999999999999998875 57777775 488999999865 22 47
Q ss_pred CCCcCCCeEEEEe-CCCccCceEecCCCCHHHHHHHHHHH
Q 023747 216 LQVEEYPTLLFYP-AGDKANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 216 ~~i~~~Ptl~~f~-~g~~~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
|++.++|++++|+ +|+.....++.|..+.+++.+++++.
T Consensus 530 ~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 530 YNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 8999999999996 56653223678999999999999874
No 132
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=6.5e-10 Score=90.25 Aligned_cols=86 Identities=21% Similarity=0.226 Sum_probs=72.0
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
.+.++|.|++.| ++|+.++|.|..++.+|.+ ..|.+||.++. +..+..+||+.. ||+ .+|.++. +...-..
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c---~~taa~~gV~am-PTF-iff~ng~--kid~~qG 92 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDEC---RGTAATNGVNAM-PTF-IFFRNGV--KIDQIQG 92 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHh---hchhhhcCcccC-ceE-EEEecCe--EeeeecC
Confidence 358899999999 9999999999999999988 99999999999 999999999999 999 5555442 2222345
Q ss_pred CChHHHHHHHHHHhc
Q 023747 116 LTPSNIEEFCSRLLH 130 (278)
Q Consensus 116 ~~~~~i~~fi~~~~~ 130 (278)
.+...|.+.+.++++
T Consensus 93 Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 93 ADASGLEEKVAKYAS 107 (288)
T ss_pred CCHHHHHHHHHHHhc
Confidence 778888888888764
No 133
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.02 E-value=2.3e-10 Score=84.49 Aligned_cols=84 Identities=17% Similarity=0.400 Sum_probs=59.3
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHH---HHHhcCCCceEEEEEeCCCCC---------------------C-CCCCC
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKL---AKHFKGLDNLVIAKIDASANE---------------------H-PKLQV 218 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~---a~~~~~~~~~~~~~vd~~~~~---------------------~-~~~~i 218 (278)
.++++++++|+++||++|+.+.+.+... ...++. ++.+..++++... + ..++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4678999999999999999999888854 444443 5777888776431 2 35699
Q ss_pred cCCCeEEEEe-CCCccCceEecCCCCHHHHHHHH
Q 023747 219 EEYPTLLFYP-AGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 219 ~~~Ptl~~f~-~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
.++|+++++. +|+.+. ++.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~--~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY--RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE--EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE--EecCCCCHHHHHhhC
Confidence 9999999995 566543 688999999998875
No 134
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.98 E-value=6.3e-09 Score=88.63 Aligned_cols=86 Identities=9% Similarity=0.197 Sum_probs=68.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC------------CC-CCCCCcCCCeEEEEeC-CC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------EH-PKLQVEEYPTLLFYPA-GD 231 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~------------~~-~~~~i~~~Ptl~~f~~-g~ 231 (278)
+++++|+||++||++|+.+.|.+.++++++. +.+..|+.+.. .+ .+++|..+|+++++.. |+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 6889999999999999999999999999985 44555554432 22 3779999999999986 56
Q ss_pred ccCceEecCCCCHHHHHHHHHHHhc
Q 023747 232 KANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 232 ~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
.+. ....|..+.+.|.+.|...+.
T Consensus 242 ~v~-~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFT-PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEE-EEEeCCCCHHHHHHHHHHHhc
Confidence 552 245688999999999987665
No 135
>PHA02125 thioredoxin-like protein
Probab=98.97 E-value=2.1e-09 Score=73.39 Aligned_cols=67 Identities=13% Similarity=0.386 Sum_probs=50.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCC-CCHHH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSAR-SSSKN 246 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~-~~~~~ 246 (278)
+++||++||++|+.+.|.+.+++ +.++.+|++.+ ++ .+|++.++||++ .|+.+. ++.|. .+..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~--~~~G~~~~~~~ 68 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD--RFTGVPRNVAE 68 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE--EEeCCCCcHHH
Confidence 68999999999999999987542 46788998877 55 589999999998 454433 56663 44455
Q ss_pred HHH
Q 023747 247 IAA 249 (278)
Q Consensus 247 l~~ 249 (278)
|.+
T Consensus 69 l~~ 71 (75)
T PHA02125 69 LKE 71 (75)
T ss_pred HHH
Confidence 543
No 136
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.96 E-value=6.5e-09 Score=77.96 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=85.9
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECC--CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTP--WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~--~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~ 225 (278)
...++..++++++ ......+|+|-.+ .++-+....-++.++++.|.+. ++.++.||++.+ ++ .+|+|.++||++
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 3456668899988 4455666666543 4677788888999999999742 599999999999 67 599999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHHhccc
Q 023747 226 FYPAGDKANPIKVSARSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 258 (278)
+|++|+.+. ...|..+.+.+.+||.++++..
T Consensus 97 ~FkdGk~v~--~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 97 VFTGGNYRG--VLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEECCEEEE--EEeCcCCHHHHHHHHHHHhcCc
Confidence 999999876 7889999999999999998753
No 137
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.96 E-value=5.8e-09 Score=81.11 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-------------C-C-CC---CCcCCCeEEEE
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-------------H-P-KL---QVEEYPTLLFY 227 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-------------~-~-~~---~i~~~Ptl~~f 227 (278)
++..+|.||++||++|+...|.++++++++. +.+..|+.+... . . .+ ++..+|+.+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 5667999999999999999999999999984 344444444321 1 1 23 67889999999
Q ss_pred eC-CCccCceEecCCCCHHHHHHHHHHH
Q 023747 228 PA-GDKANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 228 ~~-g~~~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
.. |+.+ ...+.|..+.+.+.+.|.+.
T Consensus 126 D~~G~~i-~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKA-YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEE-EEEeecccCHHHHHHHHHHh
Confidence 65 4433 12578999999998888764
No 138
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.96 E-value=1.6e-09 Score=80.27 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=62.9
Q ss_pred CCCceeeeeeeec--CCceEEEEEe-------Cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc----cchhHHHHc
Q 023747 24 PTTSLELLKVSQI--DTLDMVYVFA-------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED----LAKPFLTLF 89 (278)
Q Consensus 24 ~~~~~~~~~~~~~--~~~~~v~F~~-------~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~----~~~~l~~~~ 89 (278)
.++...+.+.+.. +++++|.||+ +| ++|+.+.|.+++++.++++.+.|+.||.++.. ...++...+
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 3444444444443 5789999999 99 99999999999999999977999999997631 015899999
Q ss_pred CCC-CCCceEEEEecCC
Q 023747 90 GLE-ESKNTVVTAFDNK 105 (278)
Q Consensus 90 ~i~-~~~Ptl~~~~~~~ 105 (278)
+|. +. ||+ .++.++
T Consensus 86 ~I~~~i-PT~-~~~~~~ 100 (119)
T cd02952 86 KLTTGV-PTL-LRWKTP 100 (119)
T ss_pred CcccCC-CEE-EEEcCC
Confidence 998 99 999 666544
No 139
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.95 E-value=5.3e-09 Score=76.96 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=80.9
Q ss_pred eeeecCCceEEEEEeCccchHHHHHHHHHHHHH---hcCceEEEEEeCCCcccchhHHHHcCCCC--CCceEEEEecCCc
Q 023747 32 KVSQIDTLDMVYVFAKADDLKSLLEPLEDIARN---FKGKIMFTAVDIADEDLAKPFLTLFGLEE--SKNTVVTAFDNKA 106 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~~~c~~~~~~~~~la~~---~~~~v~f~~vd~~~~~~~~~l~~~~~i~~--~~Ptl~~~~~~~~ 106 (278)
.++..+.+..++|+ +..+-..+...+.++|++ ++|++.|+.+|.+.. ....+.||+++ . |.+ ++.+...
T Consensus 11 ~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~---~~~~~~fgl~~~~~-P~i-~i~~~~~ 84 (111)
T cd03072 11 ELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF---RHPLLHLGKTPADL-PVI-AIDSFRH 84 (111)
T ss_pred HHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh---hhHHHHcCCCHhHC-CEE-EEEcchh
Confidence 56667777777888 445568899999999999 999999999999999 67999999996 6 999 8888765
Q ss_pred ceeec-CCCCCChHHHHHHHHHHhcCc
Q 023747 107 ISKFL-LESDLTPSNIEEFCSRLLHGT 132 (278)
Q Consensus 107 ~~~~~-~~g~~~~~~i~~fi~~~~~~~ 132 (278)
..+|. +.+..+.++|.+|++++++|+
T Consensus 85 ~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 85 MYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred cCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 56887 778899999999999998874
No 140
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.92 E-value=7.7e-09 Score=77.46 Aligned_cols=95 Identities=16% Similarity=0.232 Sum_probs=64.1
Q ss_pred cchHHHhhcCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCceEEEEEeCCCC-CCCC---------CCCcCCC
Q 023747 156 KTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHPK---------LQVEEYP 222 (278)
Q Consensus 156 ~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~~a~~~~~~~~~~~~~vd~~~~-~~~~---------~~i~~~P 222 (278)
+.+.. ....+++++|.|+++||++|+.+... | .+++..+.. ++.++.+|.++. ++.+ +++.++|
T Consensus 6 eal~~-Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 6 EAFEK-ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHH-HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 33444 34678999999999999999999763 3 256776655 699999999876 4422 5789999
Q ss_pred eEEEEe-CCCccCceEec---CCCCHHHHHHHHHH
Q 023747 223 TLLFYP-AGDKANPIKVS---ARSSSKNIAAFIKE 253 (278)
Q Consensus 223 tl~~f~-~g~~~~~~~~~---g~~~~~~l~~~i~~ 253 (278)
+++++. +|+.+....|- ...+..++..++..
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 999995 45544211221 12444566666544
No 141
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.92 E-value=3.5e-09 Score=79.36 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=66.7
Q ss_pred eeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc--------cchhHHHHcCCC----CC
Q 023747 28 LELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--------LAKPFLTLFGLE----ES 94 (278)
Q Consensus 28 ~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~--------~~~~l~~~~~i~----~~ 94 (278)
.++...++.+...+|+|+++| ++|+.+.|.+.+++++. ++.|..+|.+... +-.++.+.|++. +.
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 91 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGT 91 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCC
Confidence 445556677888999999999 99999999999999983 3667777776431 012566776654 58
Q ss_pred CceEEEEecCCcceeecCCC-CCChHHHHHHHH
Q 023747 95 KNTVVTAFDNKAISKFLLES-DLTPSNIEEFCS 126 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g-~~~~~~i~~fi~ 126 (278)
||+ .++..|..... ..| ..+.++|.+|+.
T Consensus 92 -PT~-v~~k~Gk~v~~-~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 92 -PTF-VHITDGKQVSV-RCGSSTTAQELQDIAA 121 (122)
T ss_pred -CEE-EEEeCCeEEEE-EeCCCCCHHHHHHHhh
Confidence 999 55555543333 245 567999998874
No 142
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.91 E-value=3.3e-09 Score=85.68 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=74.7
Q ss_pred cccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCC
Q 023747 16 SCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 94 (278)
Q Consensus 16 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~ 94 (278)
...++.++..++...+...+.+.+++|.||++| ++|+.+.|.|+++|.+|.. +.|++||.+.. +..|++.+.
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~------~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC------IPNYPDKNL 153 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh------HhhCCCCCC
Confidence 345666766555544444444568999999999 9999999999999999975 99999998633 478999999
Q ss_pred CceEEEEecCCcceee----cCCC-CCChHHHHHHHHH
Q 023747 95 KNTVVTAFDNKAISKF----LLES-DLTPSNIEEFCSR 127 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~----~~~g-~~~~~~i~~fi~~ 127 (278)
|||+.|.+|.....+ .+.| ..+.++|..++.+
T Consensus 154 -PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 154 -PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred -CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999444444322222 1223 3677787777654
No 143
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.89 E-value=7.9e-09 Score=94.78 Aligned_cols=87 Identities=22% Similarity=0.382 Sum_probs=67.6
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC----------------------------CCC-CC
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA----------------------------SAN-EH 213 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~----------------------------~~~-~~ 213 (278)
...+++++|.|||+||++|+...|.+.+++++++.. ++.+..|.. +.+ .+
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 346899999999999999999999999999998743 455555532 222 22
Q ss_pred -CCCCCcCCCeEEEE-eCCCccCceEecCCCCHHHHHHHHH
Q 023747 214 -PKLQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIK 252 (278)
Q Consensus 214 -~~~~i~~~Ptl~~f-~~g~~~~~~~~~g~~~~~~l~~~i~ 252 (278)
..|++..+|+.+++ ++|+.+. .+.|..+.+.|..+|.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~--~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQR--IVKGSISEAQALALIR 170 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEE--EEeCCCCHHHHHHHHH
Confidence 35689999999777 5665443 7889999999999998
No 144
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.88 E-value=3.6e-07 Score=78.02 Aligned_cols=215 Identities=18% Similarity=0.243 Sum_probs=127.6
Q ss_pred HhccCCcc---cccccCCCCceeeeeeeecCCceEEEEEeCc-cc--hHH---HHHHHHHHHHHhc-C-ceEEEEEeCCC
Q 023747 10 TLRLPKSC---TLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DD--LKS---LLEPLEDIARNFK-G-KIMFTAVDIAD 78 (278)
Q Consensus 10 ~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~--c~~---~~~~~~~la~~~~-~-~v~f~~vd~~~ 78 (278)
-|.+|+.. +++.++.+|+.... +.....+++|+.+. .+ .++ +.-.+-++|.+.- . .+.|+.||...
T Consensus 24 gLefP~YDGkDRVi~LneKNfk~~l---Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~K 100 (383)
T PF01216_consen 24 GLEFPEYDGKDRVIDLNEKNFKRAL---KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKK 100 (383)
T ss_dssp --SSSS-SSS--CEEE-TTTHHHHH---HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTT
T ss_pred ccCCccCCCccceEEcchhHHHHHH---HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHH
Confidence 34466554 47888888886644 34455777777766 21 211 2233445555543 2 29999999999
Q ss_pred cccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccc-
Q 023747 79 EDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKT- 157 (278)
Q Consensus 79 ~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~- 157 (278)
. ..+++++|+... ++| .+|..+. ...|.|.++++.+..|+.+++. .+|..++.+.
T Consensus 101 d---~klAKKLgv~E~-~Si-yVfkd~~--~IEydG~~saDtLVeFl~dl~e-----------------dPVeiIn~~~e 156 (383)
T PF01216_consen 101 D---AKLAKKLGVEEE-GSI-YVFKDGE--VIEYDGERSADTLVEFLLDLLE-----------------DPVEIINNKHE 156 (383)
T ss_dssp T---HHHHHHHT--ST-TEE-EEEETTE--EEEE-S--SHHHHHHHHHHHHS-----------------SSEEEE-SHHH
T ss_pred H---HHHHHhcCcccc-CcE-EEEECCc--EEEecCccCHHHHHHHHHHhcc-----------------cchhhhcChhh
Confidence 9 999999999998 999 6666553 5556999999999999999973 3577777743
Q ss_pred hHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCC-CCCCcCCCeEEEEeCCCccCce
Q 023747 158 FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHP-KLQVEEYPTLLFYPAGDKANPI 236 (278)
Q Consensus 158 ~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~-~~~i~~~Ptl~~f~~g~~~~~~ 236 (278)
+..+-.-.....+|-|+.+.-+. ....|+.+|..|+. .+.|..+= + ..++ +++++ +=.+-+|..=... |+
T Consensus 157 ~~~Fe~ied~~klIGyFk~~~s~---~yk~FeeAAe~F~p--~IkFfAtf-d-~~vAk~L~lK-~nev~fyepF~~~-pi 227 (383)
T PF01216_consen 157 LKAFERIEDDIKLIGYFKSEDSE---HYKEFEEAAEHFQP--YIKFFATF-D-KKVAKKLGLK-LNEVDFYEPFMDE-PI 227 (383)
T ss_dssp HHHHHH--SS-EEEEE-SSTTSH---HHHHHHHHHHHCTT--TSEEEEE--S-HHHHHHHT-S-TT-EEEE-TTSSS-EE
T ss_pred hhhhhhcccceeEEEEeCCCCcH---HHHHHHHHHHhhcC--ceeEEEEe-c-chhhhhcCcc-ccceeeeccccCC-Cc
Confidence 33332224567888877764322 24578999999987 57666543 1 1332 44554 5566777654333 66
Q ss_pred EecC-CCCHHHHHHHHHHHhcccCC
Q 023747 237 KVSA-RSSSKNIAAFIKEQLKEKDQ 260 (278)
Q Consensus 237 ~~~g-~~~~~~l~~~i~~~~~~~~~ 260 (278)
...| ..+.+.|.+||.+|-.|.-+
T Consensus 228 ~ip~~p~~e~e~~~fi~~h~rptlr 252 (383)
T PF01216_consen 228 TIPGKPYTEEELVEFIEEHKRPTLR 252 (383)
T ss_dssp EESSSS--HHHHHHHHHHT-S-SEE
T ss_pred cCCCCCCCHHHHHHHHHHhchhHhh
Confidence 6665 46779999999999887655
No 145
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.84 E-value=1.3e-08 Score=72.68 Aligned_cols=66 Identities=24% Similarity=0.509 Sum_probs=50.5
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCC----C---------------------CCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP----K---------------------LQV 218 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~----~---------------------~~i 218 (278)
+++++|+||++||++|....|.+.++.+.++...++.++.|+.++. +.. + |++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999999433799998888764 111 1 157
Q ss_pred cCCCeEEEEeCCC
Q 023747 219 EEYPTLLFYPAGD 231 (278)
Q Consensus 219 ~~~Ptl~~f~~g~ 231 (278)
..+|+++++..++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 7899999986654
No 146
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.83 E-value=9.2e-09 Score=68.52 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=47.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
-++.|+++||++|..+.+.+++++.... ++.+..+|++++ ++ .++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 3678999999999999999999987653 599999999887 55 5899999999876
No 147
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.83 E-value=4.1e-08 Score=78.11 Aligned_cols=102 Identities=16% Similarity=0.325 Sum_probs=76.0
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----------------
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------- 211 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~----------------- 211 (278)
.+..++++.+.--- -.+++++|.||++||++|....+.+.+++.++.+. ++.+..++++..
T Consensus 45 ~~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 34455555443211 24688999999999999999999999999999764 477888876532
Q ss_pred ------CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 023747 212 ------EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 212 ------~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
.+ ..|++..+|+++++..++++ ...+.|..+.+.+.+++.+
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i-~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKV-VKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcE-EEEEeCCCCHHHHHHHHHH
Confidence 22 36789999999999655544 2367899999999998875
No 148
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.82 E-value=3.8e-08 Score=79.36 Aligned_cols=86 Identities=17% Similarity=0.334 Sum_probs=64.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-C-----------------------C-CCCCCc
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E-----------------------H-PKLQVE 219 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~-----------------------~-~~~~i~ 219 (278)
.+++++|.||++||++|+...|.+.+++.. ++.+..|+.+.+ + + ..|++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 578999999999999999999999988652 356666765332 1 1 145788
Q ss_pred CCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 220 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 220 ~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
++|+.+++...+++ ...+.|..+.+.+.++|...+.
T Consensus 142 ~~P~t~vid~~G~i-~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 142 GAPETFLIDGNGII-RYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred cCCeEEEECCCceE-EEEEecCCCHHHHHHHHHHHHH
Confidence 99987777543444 3478899999999999887774
No 149
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.82 E-value=7.7e-08 Score=72.20 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=83.2
Q ss_pred CchhHHHHHHhccCCcccccccCCCCceeeeeeeecCCceEEEEEeCc---cchHHHHHHHHHHHHHhcC-ceEEEEEeC
Q 023747 1 MKSSLLKQATLRLPKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA---DDLKSLLEPLEDIARNFKG-KIMFTAVDI 76 (278)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~---~~c~~~~~~~~~la~~~~~-~v~f~~vd~ 76 (278)
|=|.|.+-+... +-+ .++.++- ..........+++|-... +++...+=.+.+++++|.+ ++.|++||.
T Consensus 6 ~~~~l~~rl~~~---g~~--~~~~~~~---~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDi 77 (132)
T PRK11509 6 PFDALWQRMLAR---GWT--PVSESRL---DDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADL 77 (132)
T ss_pred ccHHHHHHHHHc---CCC--ccccccH---HHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEEC
Confidence 345566666652 322 2333333 233344444555555433 5778899999999999984 599999999
Q ss_pred CCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcC
Q 023747 77 ADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 131 (278)
Q Consensus 77 ~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 131 (278)
+++ +.++.+|||.+. ||+ .+|.+|.. .-.+.|..+.+++.++++++++.
T Consensus 78 D~~---~~LA~~fgV~si-PTL-l~FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 78 EQS---EAIGDRFGVFRF-PAT-LVFTGGNY-RGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred CCC---HHHHHHcCCccC-CEE-EEEECCEE-EEEEeCcCCHHHHHHHHHHHhcC
Confidence 999 999999999999 999 66655532 33457889999999999998864
No 150
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.81 E-value=1.8e-08 Score=80.44 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=63.3
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC-----------------------CCC-CC-CCCCCc
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA-----------------------SAN-EH-PKLQVE 219 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~-----------------------~~~-~~-~~~~i~ 219 (278)
.+++++|+||++||++|+.+.|.+++++.. ++.+..|+. +.+ .+ ..|++.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY 136 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence 478999999999999999999999888753 244444443 222 22 356888
Q ss_pred CCCeEEEE-eCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 220 EYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 220 ~~Ptl~~f-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
++|+.+++ ++|+ + ...+.|..+.+++.++|++.++
T Consensus 137 ~~P~~~~id~~G~-i-~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 137 GAPETFLVDGNGV-I-LYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eCCeEEEEcCCce-E-EEEEeccCCHHHHHHHHHHHhh
Confidence 99977777 4554 3 2367899999999999998874
No 151
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.81 E-value=6.5e-08 Score=73.20 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHHHcCCCC--CCceEEEEecCCcceeec-CCCCCChHHHHHHHHH
Q 023747 52 KSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEE--SKNTVVTAFDNKAISKFL-LESDLTPSNIEEFCSR 127 (278)
Q Consensus 52 ~~~~~~~~~la~~~~~~-v~f~~vd~~~~~~~~~l~~~~~i~~--~~Ptl~~~~~~~~~~~~~-~~g~~~~~~i~~fi~~ 127 (278)
..+...+.++|++|+|+ +.|+++|.+.. ..+.+.|||.+ + |++ .+++...+ +|. +.|..+.++|.+|+++
T Consensus 40 ~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl~~~~~-P~v-~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~ 113 (130)
T cd02983 40 NKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNIGGFGY-PAM-VAINFRKM-KFATLKGSFSEDGINEFLRE 113 (130)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCCCccCC-CEE-EEEecccC-ccccccCccCHHHHHHHHHH
Confidence 56899999999999999 99999999999 78999999974 6 999 77777655 887 7899999999999999
Q ss_pred HhcCccc
Q 023747 128 LLHGTLT 134 (278)
Q Consensus 128 ~~~~~~~ 134 (278)
+++|++.
T Consensus 114 ~l~Gkl~ 120 (130)
T cd02983 114 LSYGRGP 120 (130)
T ss_pred HHcCCcc
Confidence 9999874
No 152
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.80 E-value=3.7e-08 Score=73.82 Aligned_cols=92 Identities=21% Similarity=0.364 Sum_probs=65.0
Q ss_pred EEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC---------------------C
Q 023747 151 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---------------------S 209 (278)
Q Consensus 151 ~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~---------------------~ 209 (278)
..++++.+.... ..+++++|.||++||++|..+.|.+.++++.+. +....+|- +
T Consensus 6 ~~~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 6 TTLDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred ecCCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 334444444433 235899999999999999999999999988742 33333332 2
Q ss_pred CC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHH
Q 023747 210 AN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAA 249 (278)
Q Consensus 210 ~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~ 249 (278)
.+ ++ ..|++.++|+++++.+++ + ...+.|..+.++|.+
T Consensus 81 ~~~~~~~~~~i~~~P~~~vid~~g-i-~~~~~g~~~~~~~~~ 120 (123)
T cd03011 81 PDGVISARWGVSVTPAIVIVDPGG-I-VFVTTGVTSEWGLRL 120 (123)
T ss_pred CCcHHHHhCCCCcccEEEEEcCCC-e-EEEEeccCCHHHHHh
Confidence 22 34 478999999999998776 4 447888888888865
No 153
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.77 E-value=2.2e-08 Score=77.03 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=52.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC------CceEEEEEeCCCC-C-C-----------------------
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL------DNLVIAKIDASAN-E-H----------------------- 213 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~------~~~~~~~vd~~~~-~-~----------------------- 213 (278)
.+++++|.|||+||++|+...|.+.++++++++. .++.+..|+.+.+ + .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 3789999999999999999999999999887642 1588888887753 1 1
Q ss_pred --CCCCCcCCCeEEEEeCCCc
Q 023747 214 --PKLQVEEYPTLLFYPAGDK 232 (278)
Q Consensus 214 --~~~~i~~~Ptl~~f~~g~~ 232 (278)
..|++.++|+.+++...++
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 1236778999999965443
No 154
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.76 E-value=4.2e-09 Score=84.90 Aligned_cols=101 Identities=19% Similarity=0.414 Sum_probs=88.7
Q ss_pred CCeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEE
Q 023747 148 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLL 225 (278)
Q Consensus 148 ~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~ 225 (278)
..++-++.+|+..++ ...++++|++|||+.|+...+.|+..|.--.+. .+.++.||+..+ .+ .+|-+..+|+|+
T Consensus 24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEE
Confidence 368889999999987 567999999999999999999999998877665 699999999998 45 599999999999
Q ss_pred EEeCCCccCceEecCCCCHHHHHHHHHHHh
Q 023747 226 FYPAGDKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
..++|..- +|.|.++..+++.|+...-
T Consensus 100 HvkDGeFr---rysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 100 HVKDGEFR---RYSGARDKNDFISFEEHRE 126 (248)
T ss_pred Eeeccccc---cccCcccchhHHHHHHhhh
Confidence 99999864 7999999999999997543
No 155
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.76 E-value=3.3e-08 Score=75.25 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=53.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCC--------------------------CCC-CC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN--------------------------EHP-KL 216 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~~~~~~vd~~~~--------------------------~~~-~~ 216 (278)
.+++++|.||++||++|+...|.+.++++.++.. .++.+..|+.+.. .+. .|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3689999999999999999999999999998764 2466666666542 122 47
Q ss_pred CCcCCCeEEEEeCCCc
Q 023747 217 QVEEYPTLLFYPAGDK 232 (278)
Q Consensus 217 ~i~~~Ptl~~f~~g~~ 232 (278)
++.++|+++++..+++
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 8999999999965443
No 156
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.76 E-value=3.3e-08 Score=75.08 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=52.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CceEEEEEeCCCC-------------------------CC-CCCC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGL-DNLVIAKIDASAN-------------------------EH-PKLQ 217 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~-~~~~~~~vd~~~~-------------------------~~-~~~~ 217 (278)
.+++++|.||++||++|+...|.+.++...++.. .++.+..++.+.. .+ ..|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3689999999999999999999999999998753 2466666666533 11 2578
Q ss_pred CcCCCeEEEEeCCCc
Q 023747 218 VEEYPTLLFYPAGDK 232 (278)
Q Consensus 218 i~~~Ptl~~f~~g~~ 232 (278)
+..+|+++++..+++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999964443
No 157
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.74 E-value=5.4e-08 Score=73.43 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=55.8
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC-----------------------CCC-CC-CCCCCc
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA-----------------------SAN-EH-PKLQVE 219 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~-----------------------~~~-~~-~~~~i~ 219 (278)
.+++++|+||++||++|....|.++++++.+ ++.+..|+. +.+ .+ ..|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3789999999999999999999999998876 255555553 222 23 357899
Q ss_pred CCCeEEEEe-CCCccCceEecCCCCHHHH
Q 023747 220 EYPTLLFYP-AGDKANPIKVSARSSSKNI 247 (278)
Q Consensus 220 ~~Ptl~~f~-~g~~~~~~~~~g~~~~~~l 247 (278)
.+|+.+++. +|+.. .++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~--~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIR--YKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEE--EEEeccCChHhc
Confidence 999777774 55433 367888776543
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.74 E-value=5.8e-08 Score=68.46 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=59.7
Q ss_pred CCc-EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCC
Q 023747 166 HKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARS 242 (278)
Q Consensus 166 ~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~ 242 (278)
+++ -+..|+++||++|....+.+.+++..+. ++.+..+|.+.. +. .+|+|.++|++++ +|+. .+.|..
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~----~~~G~~ 81 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL----FGFGRM 81 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE----EEeCCC
Confidence 444 5888999999999999999999998775 589999998887 45 6999999999975 6643 456877
Q ss_pred CHHHHH
Q 023747 243 SSKNIA 248 (278)
Q Consensus 243 ~~~~l~ 248 (278)
+.++++
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 766654
No 159
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.72 E-value=8.3e-07 Score=82.93 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=126.6
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCC
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 116 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~ 116 (278)
+++-+.+|.+. ..|.++...+++++..- +++.+..-+ . . ... |++ .+..++......|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~---~---~--------~~~-p~~-~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDS---L---D--------VRK-PSF-SITRPGEDTGVRFAGIP 81 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEcc---C---C--------CCC-CEE-EEEcCCccceEEEEecC
Confidence 34544444445 88999999999998765 456664421 1 1 234 999 66654433445568889
Q ss_pred ChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCCc-EEEEEECCCChhHHHHHHHHHHHHHHh
Q 023747 117 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHF 195 (278)
Q Consensus 117 ~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~ 195 (278)
.-.++..|+..+++- .+.-..++.+..+. +..-+++ -+..|++++|++|......+++++..-
T Consensus 82 ~g~Ef~s~i~~i~~~---------------~~~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~ 145 (517)
T PRK15317 82 MGHEFTSLVLALLQV---------------GGHPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN 145 (517)
T ss_pred ccHHHHHHHHHHHHh---------------cCCCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC
Confidence 999999999998742 12233444444443 4444444 588999999999999999999998864
Q ss_pred cCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 196 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 196 ~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
. ++.+-.+|...+ ++ .+|++.++|++++ +|+. .+.|..+.++|.+.+.+..++
T Consensus 146 ~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~~~~~~~~ 200 (517)
T PRK15317 146 P---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE----FGQGRMTLEEILAKLDTGAAA 200 (517)
T ss_pred C---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhccccc
Confidence 4 688999998888 66 5999999999976 4432 588999999999999876654
No 160
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.69 E-value=1.9e-07 Score=68.66 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=69.3
Q ss_pred ceEEEEEeC----c-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCcccchhHHHHcCCCC----CCceEEEEecCCcce
Q 023747 39 LDMVYVFAK----A-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADEDLAKPFLTLFGLEE----SKNTVVTAFDNKAIS 108 (278)
Q Consensus 39 ~~~v~F~~~----~-~~c~~~~~~~~~la~~~~-~~v~f~~vd~~~~~~~~~l~~~~~i~~----~~Ptl~~~~~~~~~~ 108 (278)
+.++.||+- . ..-+.+...+.++|++++ |++.|+.+|.++. ....+.||+++ . |++ ++.+... .
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~---~~~l~~fgl~~~~~~~-P~~-~i~~~~~-~ 89 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF---SHELEEFGLDFSGGEK-PVV-AIRTAKG-K 89 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH---HHHHHHcCCCcccCCC-CEE-EEEeCCC-C
Confidence 345555432 4 556789999999999999 7999999999988 77999999994 6 999 8887544 6
Q ss_pred eecCCCCC-ChHHHHHHHHHH
Q 023747 109 KFLLESDL-TPSNIEEFCSRL 128 (278)
Q Consensus 109 ~~~~~g~~-~~~~i~~fi~~~ 128 (278)
+|.+.+.. +.++|.+|++++
T Consensus 90 KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 90 KYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred ccCCCcccCCHHHHHHHHHHh
Confidence 89888888 999999999885
No 161
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.68 E-value=3.7e-07 Score=83.93 Aligned_cols=90 Identities=9% Similarity=0.022 Sum_probs=72.2
Q ss_pred eecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeC----------------------------CCcccch
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDI----------------------------ADEDLAK 83 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~----------------------------~~~~~~~ 83 (278)
.+.+++++|.||++| ++|+...|.+++++++++. .+.|+.|.. +.. .
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~---~ 129 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG---G 129 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc---H
Confidence 346789999999999 9999999999999999973 366655532 233 6
Q ss_pred hHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHH
Q 023747 84 PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 84 ~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
.+.+.|+|.++ ||+ .+++.++.....+.|..+.++|.++++..
T Consensus 130 ~lak~fgV~gi-PTt-~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 130 TLAQSLNISVY-PSW-AIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHHHcCCCCc-CeE-EEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 79999999999 999 66654445566678999999999999954
No 162
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.66 E-value=3.6e-07 Score=67.62 Aligned_cols=90 Identities=13% Similarity=0.224 Sum_probs=70.1
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCceEEEEEeCCCC---CC-CCCCCcCCCeEEEEeC--CCcc
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN---EH-PKLQVEEYPTLLFYPA--GDKA 233 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~~a~~~~~~~~~~~~~vd~~~~---~~-~~~~i~~~Ptl~~f~~--g~~~ 233 (278)
...++.++|+|+++||++|+.+... | ..+.+.++. ++.+..+|.+.. .+ ..|++.++|+++++.. |+.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 4558999999999999999998653 3 356666665 688888898764 23 4779999999999964 4443
Q ss_pred CceEecCCCCHHHHHHHHHHHhc
Q 023747 234 NPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 234 ~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
.+..|..+.+.+...|++...
T Consensus 92 --~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 --KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred --EEEcCCCCHHHHHHHHHHHHh
Confidence 378899999999999887653
No 163
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=9e-08 Score=95.82 Aligned_cols=89 Identities=21% Similarity=0.444 Sum_probs=71.3
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC---CC------------------------C-CC-CC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA---SA------------------------N-EH-PK 215 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~---~~------------------------~-~~-~~ 215 (278)
.+++++|.|||+||++|+...|.++++++++++. .+.+..|.+ +. + .+ .+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999763 477776642 11 1 11 35
Q ss_pred CCCcCCCeEEEE-eCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 216 LQVEEYPTLLFY-PAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 216 ~~i~~~Ptl~~f-~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
|++..+|+++++ ++|+.+. ++.|....+.+.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~--~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA--QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE--EEecccCHHHHHHHHHHHHH
Confidence 689999999999 5666543 68899999999999998875
No 164
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.64 E-value=1.8e-07 Score=68.39 Aligned_cols=66 Identities=23% Similarity=0.492 Sum_probs=54.9
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC------------------------CC-CCCCCcC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------------------EH-PKLQVEE 220 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~------------------------~~-~~~~i~~ 220 (278)
+++++|+||++||++|....+.+.++...+... ++.++.|+++.. .+ ..|++..
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 789999999999999999999999999999632 689999998872 23 4678899
Q ss_pred CCeEEEEeCCCc
Q 023747 221 YPTLLFYPAGDK 232 (278)
Q Consensus 221 ~Ptl~~f~~g~~ 232 (278)
+|+++++..+++
T Consensus 98 ~P~~~l~d~~g~ 109 (116)
T cd02966 98 LPTTFLIDRDGR 109 (116)
T ss_pred cceEEEECCCCc
Confidence 999999964443
No 165
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.63 E-value=4.8e-07 Score=71.79 Aligned_cols=84 Identities=10% Similarity=0.143 Sum_probs=62.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--------------C-CCCCC--cCCCeEEEEeCCCc
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------------H-PKLQV--EEYPTLLFYPAGDK 232 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--------------~-~~~~i--~~~Ptl~~f~~g~~ 232 (278)
+|.||++||++|+...|.+.++++++. +.+..|+.+... + ..|++ ..+|+.+++..+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 788999999999999999999999984 455445544321 1 13453 58999999955444
Q ss_pred cCceEecCCCCHHHHHHHHHHHhcc
Q 023747 233 ANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 233 ~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
+....+.|..+.+.+.+.|.+.+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 3112588999999999999888765
No 166
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.62 E-value=9.9e-08 Score=70.23 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=63.8
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHH---HHHHhcCceEEEEEeCCCcc-----------------cchhHHHHcCCCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLED---IARNFKGKIMFTAVDIADED-----------------LAKPFLTLFGLEES 94 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~---la~~~~~~v~f~~vd~~~~~-----------------~~~~l~~~~~i~~~ 94 (278)
.+++.+++|+++| +.|+++.+.+.+ +...++..+.+..+++.... ...++.+.+||.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 5678999999999 999999988885 55566666888888887542 01469999999999
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
||+ .+++..+...+.+.|..+.++|.+++
T Consensus 84 -Pt~-~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 -PTI-VFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SEE-EECTTTSCEEEEEESS--HHHHHHHH
T ss_pred -CEE-EEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999 78875444455668999999988764
No 167
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.60 E-value=2.9e-06 Score=79.30 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=124.7
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCC
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 116 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~ 116 (278)
.++-+.+|... ..|+++...+++++..- +++.+..-+... ... |++ .+..++......|.|-.
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-------------~~~-p~~-~~~~~~~~~~i~f~g~P 82 (515)
T TIGR03140 19 NPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT-------------LRK-PSF-TILRDGADTGIRFAGIP 82 (515)
T ss_pred CCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-------------CCC-CeE-EEecCCcccceEEEecC
Confidence 34544444334 78999999999888765 457775433211 233 999 66554433345568888
Q ss_pred ChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEcccchHHHhhcCCC-cEEEEEECCCChhHHHHHHHHHHHHHHh
Q 023747 117 TPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLNSHK-DVLLEVYTPWCVTCETTSKQIEKLAKHF 195 (278)
Q Consensus 117 ~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~~~~-~~~v~f~~~~c~~c~~~~~~~~~~a~~~ 195 (278)
.-.++..|+..+++- ++.-..++.+..+. +..-++ ..+-.|+++.|++|......+.+++...
T Consensus 83 ~g~Ef~s~i~~i~~~---------------~~~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~ 146 (515)
T TIGR03140 83 GGHEFTSLVLAILQV---------------GGHGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN 146 (515)
T ss_pred CcHHHHHHHHHHHHh---------------cCCCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 999999999998742 22234454454444 444344 4588999999999999888888888775
Q ss_pred cCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 196 KGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 196 ~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
. ++..-.+|.... ++ .+|++.++|++++ +|+. .+.|..+.+++.+.+.+..+.
T Consensus 147 p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~----~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 147 P---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE----FHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred C---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE----EEecCCCHHHHHHHHhhccCc
Confidence 5 588888998888 66 6999999999986 4432 578999999998888766443
No 168
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.60 E-value=3.3e-07 Score=77.56 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCCeEEEcc-cchHHHhhcCC--CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-CCCCCCcCCC
Q 023747 147 NANVQIVVG-KTFDDLVLNSH--KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HPKLQVEEYP 222 (278)
Q Consensus 147 ~~~v~~l~~-~~~~~~i~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-~~~~~i~~~P 222 (278)
.+.|..++. +.|.+.+...+ ..++|+||.+.++.|..+...+..+|..|.. ++|++|..+.-. +..|.+..+|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLP 200 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-S
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCC
Confidence 456888865 78888885543 3689999999999999999999999999984 899999987653 4689999999
Q ss_pred eEEEEeCCCccCce-Ee---cC-CCCHHHHHHHHHHH
Q 023747 223 TLLFYPAGDKANPI-KV---SA-RSSSKNIAAFIKEQ 254 (278)
Q Consensus 223 tl~~f~~g~~~~~~-~~---~g-~~~~~~l~~~i~~~ 254 (278)
+|++|++|..+..+ .+ -| .++..+|..||.++
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999998755321 11 12 47788999888754
No 169
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.58 E-value=5e-07 Score=77.03 Aligned_cols=90 Identities=7% Similarity=-0.044 Sum_probs=67.9
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc-------ccchhHHHHcCCCCCCceEEEEecC-Ccc
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-------DLAKPFLTLFGLEESKNTVVTAFDN-KAI 107 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~-------~~~~~l~~~~~i~~~~Ptl~~~~~~-~~~ 107 (278)
+++.+|.||++| ++|+...|.++++++++.-.|..+.+|.+.. .+ ..+++++||.+. |++ .+++. ++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d-~~la~~~gV~~v-Ptl-~Lv~~~~~~ 242 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPD-AGQAQQLKIRTV-PAV-FLADPDPNQ 242 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCC-HHHHHHcCCCcC-CeE-EEEECCCCE
Confidence 468999999999 9999999999999999964444444444321 01 468999999999 999 66665 333
Q ss_pred eeecCCCCCChHHHHHHHHHHh
Q 023747 108 SKFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 108 ~~~~~~g~~~~~~i~~fi~~~~ 129 (278)
......|..+.++|.+.+....
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHh
Confidence 3333458899999999998765
No 170
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.58 E-value=5.4e-07 Score=67.62 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=47.8
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCceEEEEEeCCCCC-CCCCCCcCCCeEEEEe-CCCcc
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASANE-HPKLQVEEYPTLLFYP-AGDKA 233 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~~~~~~vd~~~~~-~~~~~i~~~Ptl~~f~-~g~~~ 233 (278)
...+|+++|+|+++||++|+.+...+. ++.+.++. ++..+.++.+..+ ...-....+|+++|+. +|+.+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~~g~vi 93 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECCCCCCc
Confidence 456899999999999999999987653 55555544 5676677765332 1111236799999995 44443
No 171
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.58 E-value=8.8e-07 Score=70.40 Aligned_cols=91 Identities=11% Similarity=0.249 Sum_probs=74.4
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcc-------------------cchhHHHHcCCCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED-------------------LAKPFLTLFGLEES 94 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~-------------------~~~~l~~~~~i~~~ 94 (278)
.++++++.||++| ++|+...+.+.++++++.+. +.++.|+++... ....+++.||+.+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4578999999999 99999999999999999764 888888876431 12578999999999
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHHHHH
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
|++ .+++.++.....+.|..+.+++.++++++
T Consensus 140 -P~~-~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 -PTT-FLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred -CeE-EEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999 66765555566678999999999999864
No 172
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.57 E-value=1.6e-07 Score=69.77 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=62.7
Q ss_pred eecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCC--CCceEEEEec-CCcce-
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEE--SKNTVVTAFD-NKAIS- 108 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~--~~Ptl~~~~~-~~~~~- 108 (278)
...+++++|.|+++| ++|+.+.|.+.+.+........|+.+|.+..+ ......|++.+ . ||+ .+++ .|...
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~v-Pt~-~f~~~~Gk~~~ 91 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYI-PRI-LFLDPSGDVHP 91 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCcc-ceE-EEECCCCCCch
Confidence 346789999999999 99999999999987765444456666666542 24567899986 7 999 7776 33322
Q ss_pred -eecCCCCCChHHHHHHHHHHh
Q 023747 109 -KFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 109 -~~~~~g~~~~~~i~~fi~~~~ 129 (278)
.+...|..+......++..+.
T Consensus 92 ~~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 92 EIINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hhccCCCCccccccCCCHHHHH
Confidence 223345555555555555543
No 173
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.56 E-value=5.1e-07 Score=61.69 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=56.1
Q ss_pred EEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC-CChH
Q 023747 42 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD-LTPS 119 (278)
Q Consensus 42 v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~-~~~~ 119 (278)
|.||++| ++|+.+.|.++++++++...+.|..+| + .+.+.++|+.+. |++ .+ +|.. . +.|. .+.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~---~~~a~~~~v~~v-Pti-~i-~G~~--~--~~G~~~~~~ 69 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---D---MNEILEAGVTAT-PGV-AV-DGEL--V--IMGKIPSKE 69 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---C---HHHHHHcCCCcC-CEE-EE-CCEE--E--EEeccCCHH
Confidence 7899999 999999999999999999889998888 3 355788999999 999 55 4432 2 4564 4557
Q ss_pred HHHHHH
Q 023747 120 NIEEFC 125 (278)
Q Consensus 120 ~i~~fi 125 (278)
.+.+++
T Consensus 70 ~l~~~l 75 (76)
T TIGR00412 70 EIKEIL 75 (76)
T ss_pred HHHHHh
Confidence 777665
No 174
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.54 E-value=2.3e-07 Score=68.48 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEE
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKI 206 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~v 206 (278)
.+++++|.||++||++|+...|.+++++..+.+ ++.+..+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 368999999999999999999999999988865 4555544
No 175
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.53 E-value=5.7e-07 Score=59.73 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=49.0
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
-+..|+++| ++|+.+.+.+++++..+. .+.|..+|.++. +++++++|+.+. ||+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~---~~l~~~~~i~~v-Pti 56 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEF---PDLADEYGVMSV-PAI 56 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccC---HhHHHHcCCccc-CEE
Confidence 467899999 999999999999988754 499999999988 899999999999 999
No 176
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.52 E-value=9.8e-08 Score=66.30 Aligned_cols=64 Identities=22% Similarity=0.590 Sum_probs=49.3
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeEEEEe
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYP 228 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl~~f~ 228 (278)
...+++++|+|+++||++|+.+...+ .++...+.. ++.+..+|.+..+- ..+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 45699999999999999999998777 355554554 79999999976632 233336699999985
No 177
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.4e-07 Score=75.25 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=71.0
Q ss_pred CCCCeEEE-cccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCC---
Q 023747 146 TNANVQIV-VGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQV--- 218 (278)
Q Consensus 146 ~~~~v~~l-~~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i--- 218 (278)
.+..++.. +.+.+++.+..+ ...|+|.|++.|.+.|..+.|.|.+++.+|..+ .+.||++|+... +. ++|+|
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccC
Confidence 34567777 455666655333 457999999999999999999999999999875 799999999988 44 57754
Q ss_pred ---cCCCeEEEEeCCCccC
Q 023747 219 ---EEYPTLLFYPAGDKAN 234 (278)
Q Consensus 219 ---~~~Ptl~~f~~g~~~~ 234 (278)
..+||+++|.+|+++.
T Consensus 201 ~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred cccccCCeEEEEccchhhh
Confidence 4689999999998874
No 178
>PHA02125 thioredoxin-like protein
Probab=98.49 E-value=1.1e-06 Score=59.81 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=43.2
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
+++|+++| ++|+.+.|.+++++ +.++.||.+.. .+++++|+|.++ ||+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~---~~l~~~~~v~~~-PT~ 50 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEG---VELTAKHHIRSL-PTL 50 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCC---HHHHHHcCCcee-CeE
Confidence 68999999 99999999998763 46788998888 899999999999 999
No 179
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.49 E-value=9e-07 Score=83.27 Aligned_cols=90 Identities=10% Similarity=0.128 Sum_probs=72.5
Q ss_pred cCCceEEEEEeCc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEecCCcce--
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAIS-- 108 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~---~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~~~~~~-- 108 (278)
.+++++|.||++| .+|+.+.+.. .++.+.+++ +.+.++|.++++. ..+++++|++.++ ||+ .+++.++..
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~-Pt~-~~~~~~G~~i~ 549 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL-PTI-LFFDAQGQEIP 549 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC-CEE-EEECCCCCCcc
Confidence 3579999999999 9999998875 678888875 8899999986421 2689999999999 999 777633222
Q ss_pred eecCCCCCChHHHHHHHHHH
Q 023747 109 KFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 109 ~~~~~g~~~~~~i~~fi~~~ 128 (278)
...+.|..+.+++.+++++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 35568899999999999875
No 180
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.49 E-value=7.7e-07 Score=71.32 Aligned_cols=94 Identities=29% Similarity=0.470 Sum_probs=74.0
Q ss_pred eeeeeeecCCc-eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCC--CCCceEEEEecC
Q 023747 29 ELLKVSQIDTL-DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE--ESKNTVVTAFDN 104 (278)
Q Consensus 29 ~~~~~~~~~~~-~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~--~~~Ptl~~~~~~ 104 (278)
.+....+.+.+ ++++|.... ...+.+...++++|+++++++.|+.+|++.. +++++.+|+. .. |++ .+++.
T Consensus 86 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~---~~~~~~~~i~~~~~-P~~-vi~~~ 160 (184)
T PF13848_consen 86 NFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF---PRLLKYFGIDEDDL-PAL-VIFDS 160 (184)
T ss_dssp HHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT---HHHHHHTTTTTSSS-SEE-EEEET
T ss_pred hHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh---HHHHHHcCCCCccC-CEE-EEEEC
Confidence 34555666655 566666555 6778999999999999999999999999988 8999999999 66 999 77764
Q ss_pred Ccce-eecCCCCCChHHHHHHHHH
Q 023747 105 KAIS-KFLLESDLTPSNIEEFCSR 127 (278)
Q Consensus 105 ~~~~-~~~~~g~~~~~~i~~fi~~ 127 (278)
.... .|.+.+..+.++|.+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 161 NKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCCcEEcCCCCCCCHHHHHHHhcC
Confidence 4433 3445888999999999975
No 181
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.48 E-value=3.2e-07 Score=83.80 Aligned_cols=100 Identities=23% Similarity=0.447 Sum_probs=75.9
Q ss_pred EEEccc-chHHHhhcC-CCcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCceEEEEEeCCCC--CC----CCCCCc
Q 023747 151 QIVVGK-TFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN--EH----PKLQVE 219 (278)
Q Consensus 151 ~~l~~~-~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~~~~~~vd~~~~--~~----~~~~i~ 219 (278)
+.++.. .+++.+.+. +++++|.|||+||-.|+.+.+... ++...++ ++...+.|.+++ ++ .++++-
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~---~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ---DVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC---CeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 555554 777776544 359999999999999999987755 2333333 699999999988 23 478999
Q ss_pred CCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHH
Q 023747 220 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 220 ~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
+.|++++|+.+++. +....|.++.+.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e-~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSE-PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCc-CcCCcceecHHHHHHHHHHh
Confidence 99999999844433 22478999999999999765
No 182
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.47 E-value=2.1e-06 Score=66.77 Aligned_cols=95 Identities=8% Similarity=0.139 Sum_probs=65.0
Q ss_pred eeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-c------chhHH-HHc---CCCCCCceEE
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-L------AKPFL-TLF---GLEESKNTVV 99 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~------~~~l~-~~~---~i~~~~Ptl~ 99 (278)
+........+|.||++| ++|++..|.+++++++++-.|..+.+|..... + ..... ..| ++.++ ||.
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i-PTt- 122 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT-PAT- 122 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC-CeE-
Confidence 33445566799999999 99999999999999998533444444432100 0 02333 445 78898 999
Q ss_pred EEecCCcce-eecCCCCCChHHHHHHHHHH
Q 023747 100 TAFDNKAIS-KFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 100 ~~~~~~~~~-~~~~~g~~~~~~i~~fi~~~ 128 (278)
.+++.+++. .....|..+.+++.+.+.+.
T Consensus 123 ~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 788765443 33457899999998887764
No 183
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.45 E-value=1.6e-06 Score=64.91 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=66.3
Q ss_pred eeeecCCceEEEEEeCc-cchHHHHHH-H--HHHHHHhcCceEEEEEeCCCcccchhHHH--------HcCCCCCCceEE
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLLEP-L--EDIARNFKGKIMFTAVDIADEDLAKPFLT--------LFGLEESKNTVV 99 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~~~-~--~~la~~~~~~v~f~~vd~~~~~~~~~l~~--------~~~i~~~~Ptl~ 99 (278)
...+.+++++|.|+++| ++|+.+.+. | .+++..+...+.++.+|.++. +++++ .||+.|+ |++
T Consensus 10 ~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~---~~~~~~~~~~~~~~~~~~G~-Pt~- 84 (124)
T cd02955 10 KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER---PDVDKIYMNAAQAMTGQGGW-PLN- 84 (124)
T ss_pred HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC---cHHHHHHHHHHHHhcCCCCC-CEE-
Confidence 34456789999999999 999999873 3 367777776799999999887 66655 3589999 999
Q ss_pred EEecCCcceeecC-----CCCCChHHHHHHHHHH
Q 023747 100 TAFDNKAISKFLL-----ESDLTPSNIEEFCSRL 128 (278)
Q Consensus 100 ~~~~~~~~~~~~~-----~g~~~~~~i~~fi~~~ 128 (278)
.+++..+...+.. ....+...+.++++.+
T Consensus 85 vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 85 VFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 7776554444322 2225556777777765
No 184
>smart00594 UAS UAS domain.
Probab=98.41 E-value=3e-06 Score=63.53 Aligned_cols=87 Identities=9% Similarity=0.169 Sum_probs=64.2
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCceEEEEEeCCCCC---C-CCCCCcCCCeEEEEe-CCC-cc
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASANE---H-PKLQVEEYPTLLFYP-AGD-KA 233 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~~~~~~vd~~~~~---~-~~~~i~~~Ptl~~f~-~g~-~~ 233 (278)
...+|.++|+|+++||++|..+....- ++...++. ++.+..+|.+..+ + ..|++.++|++.++. +|+ ..
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 455789999999999999998865432 55556655 6888888877663 3 478999999999994 432 11
Q ss_pred C--ceEecCCCCHHHHHHHH
Q 023747 234 N--PIKVSARSSSKNIAAFI 251 (278)
Q Consensus 234 ~--~~~~~g~~~~~~l~~~i 251 (278)
. .-+..|..+.++|+.++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 0 11567999999998876
No 185
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.40 E-value=2.5e-06 Score=60.72 Aligned_cols=67 Identities=18% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhc--CceEEEEEeCCCccc----------------------chhHHHHcCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFK--GKIMFTAVDIADEDL----------------------AKPFLTLFGL 91 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~--~~v~f~~vd~~~~~~----------------------~~~l~~~~~i 91 (278)
+++++++||++| ++|+...|.+.++.++|+ +.+.|+.|+.+.... ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 367899999999 999999999999999999 679999888885522 4568888899
Q ss_pred CCCCceEEEEecCC
Q 023747 92 EESKNTVVTAFDNK 105 (278)
Q Consensus 92 ~~~~Ptl~~~~~~~ 105 (278)
.+. |++ .+++..
T Consensus 81 ~~i-P~~-~lld~~ 92 (95)
T PF13905_consen 81 NGI-PTL-VLLDPD 92 (95)
T ss_dssp TSS-SEE-EEEETT
T ss_pred CcC-CEE-EEECCC
Confidence 988 998 666543
No 186
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.40 E-value=1.4e-06 Score=65.61 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=37.6
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 208 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~ 208 (278)
.+++++|.||++||++|....|.++++.++++.. ++.+..|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEecc
Confidence 4689999999999999999999999999999863 577777764
No 187
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.37 E-value=2.5e-06 Score=64.21 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeC-----------------------CCcccchhHHHHcCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI-----------------------ADEDLAKPFLTLFGLE 92 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~-----------------------~~~~~~~~l~~~~~i~ 92 (278)
+++++|.||++| ++|....|.++++++++. +.++.|+. +.. ..+++.|++.
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~v~ 99 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPD---GRVGIDLGVY 99 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc---chHHHhcCCC
Confidence 568999999999 999999999999998873 66666653 223 5788999999
Q ss_pred CCCceEEEEecCCcceeecCCCCCChHHH
Q 023747 93 ESKNTVVTAFDNKAISKFLLESDLTPSNI 121 (278)
Q Consensus 93 ~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i 121 (278)
+. |+. .+++.++...+.+.|..+.+.|
T Consensus 100 ~~-P~~-~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GV-PET-FLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CC-CeE-EEECCCceEEEEEeccCChHhc
Confidence 99 977 5666554566777888776654
No 188
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.37 E-value=1e-06 Score=61.68 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=77.4
Q ss_pred ceeeeeeeecCCceEEEEEeCccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCC----CCCceEEEEe
Q 023747 27 SLELLKVSQIDTLDMVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE----ESKNTVVTAF 102 (278)
Q Consensus 27 ~~~~~~~~~~~~~~~v~F~~~~~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~----~~~Ptl~~~~ 102 (278)
...+-+.++....++++|..+..........+.++|...+|.-.++.|||.+.+. ..||+++.|. .- |..+..|
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~-kKLCKKlKv~~~~kp~-~~~LkHY 86 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSES-RKLCKKLKVDPSSKPK-PVELKHY 86 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHH-HHHHHHHccCCCCCCC-cchhhcc
Confidence 3445566777777888888888666778889999999999999999999997432 7999999999 54 6654555
Q ss_pred cCCcceeecCCCCCChHHHHHHHHHH
Q 023747 103 DNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 103 ~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
..|. -+-.|+...+..+|..|+++.
T Consensus 87 KdG~-fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 87 KDGD-FHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred cCCC-ccccccchhhHHHHHHHhhCC
Confidence 4443 244568889999999999873
No 189
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.34 E-value=4.2e-06 Score=66.72 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc--------------------ccchhHHHHcCCCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE--------------------DLAKPFLTLFGLEES 94 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~--------------------~~~~~l~~~~~i~~~ 94 (278)
.++++++.||++| ++|+...|.+++++++ + +.+..|+.++. +....+.+.|++.+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 5678999999999 9999999999998764 2 55555554211 001467788999998
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHHHHHh
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~ 129 (278)
|+. .+++.++...+.+.|..+.+++.+++.+++
T Consensus 139 -P~~-~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 139 -PET-FLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred -CeE-EEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 987 566655556777789999999999999876
No 190
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.33 E-value=5.5e-06 Score=58.36 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=57.8
Q ss_pred ceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCC
Q 023747 39 LDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLT 117 (278)
Q Consensus 39 ~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~ 117 (278)
+.+..|+++| ++|+...+.+.+++..+.+ +.+..+|.++. ++++++|||.+. |++ . +++. ..+ .|..+
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~---~e~a~~~~V~~v-Pt~-v-idG~--~~~--~G~~~ 82 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGALF---QDEVEERGIMSV-PAI-F-LNGE--LFG--FGRMT 82 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHhC---HHHHHHcCCccC-CEE-E-ECCE--EEE--eCCCC
Confidence 3467777899 9999999999999988764 99999999999 899999999999 999 4 4543 233 56566
Q ss_pred hHHH
Q 023747 118 PSNI 121 (278)
Q Consensus 118 ~~~i 121 (278)
.+++
T Consensus 83 ~~e~ 86 (89)
T cd03026 83 LEEI 86 (89)
T ss_pred HHHH
Confidence 5554
No 191
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.32 E-value=1.8e-05 Score=57.83 Aligned_cols=105 Identities=18% Similarity=0.366 Sum_probs=75.6
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHH-HHhcCCCceEEEEEeCCCC------CC-CCCCC--c
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLA-KHFKGLDNLVIAKIDASAN------EH-PKLQV--E 219 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a-~~~~~~~~~~~~~vd~~~~------~~-~~~~i--~ 219 (278)
...++.-+|+++| ...+.++|-|=... +--.-...|.++| ......+++-++.|-+... ++ .+|++ .
T Consensus 6 ~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 6 CVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp SEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 6789999999998 55689999996532 3334577899999 5555555899999988655 22 36776 6
Q ss_pred CCCeEEEEeCCCccCceEe--cCCCCHHHHHHHHHHHhccc
Q 023747 220 EYPTLLFYPAGDKANPIKV--SARSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 220 ~~Ptl~~f~~g~~~~~~~~--~g~~~~~~l~~~i~~~~~~~ 258 (278)
.+|.+++|..|. ..++.| .|..+.++|.+|++++.+.-
T Consensus 83 ~fPv~~LF~~~~-~~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 83 DFPVIYLFVGDK-EEPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp C-SEEEEEESST-TSEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred cCCEEEEecCCC-CCCccCCccCCccHHHHHHHHHhCCCee
Confidence 799999999544 448888 88999999999999997643
No 192
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.30 E-value=8e-06 Score=65.82 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=69.6
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc--------------------chhHHHHcCCCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--------------------AKPFLTLFGLEES 94 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~--------------------~~~l~~~~~i~~~ 94 (278)
.+++++|.||++| ++|+...|.+.+++++ + +.+..|+.++... ...+++.||+.+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 4678999999999 9999999999999763 3 6677776543210 1235567899999
Q ss_pred CceEEEEecCCcceeecCCCCCChHHHHHHHHHHhc
Q 023747 95 KNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 130 (278)
|+. .+++.++...+.+.|..+.+.+.+.++..+.
T Consensus 144 -P~t-~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 -PET-FLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred -CeE-EEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 988 6777665667888999999999999988774
No 193
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.8e-07 Score=71.08 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=56.8
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcccchhHHHHcCCCCC----C-ceEEEEecCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDLAKPFLTLFGLEES----K-NTVVTAFDNK 105 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~~~~~l~~~~~i~~~----~-Ptl~~~~~~~ 105 (278)
....|++.||+.| +.|...+|.|.+++.+|... ++||+||.... ++.+++|+|... + ||++.+.+|+
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf---pd~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF---PDVAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC---cChHHheeeccCcccccCCeEEEEccch
Confidence 3467999999999 99999999999999999864 99999999999 899999999822 1 9994444444
No 194
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.27 E-value=7.6e-06 Score=66.17 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=55.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEe-------------CC------CCCC-CCCCCcCCCeE
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID-------------AS------ANEH-PKLQVEEYPTL 224 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd-------------~~------~~~~-~~~~i~~~Ptl 224 (278)
.+++++|.||++||++|+...|.+.++.+.... ++.++..| .+ ..++ ..|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 468899999999999999999999998876532 44444321 00 0122 35688899998
Q ss_pred EEEeCCCccCceEecCC-CCHHHHHHHHHH
Q 023747 225 LFYPAGDKANPIKVSAR-SSSKNIAAFIKE 253 (278)
Q Consensus 225 ~~f~~g~~~~~~~~~g~-~~~~~l~~~i~~ 253 (278)
+++.+++.+ .+.|. .+.+.+.++++.
T Consensus 151 ~lID~~G~I---~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKI---RAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeE---EEccCCCCHHHHHHHHHH
Confidence 888654433 55664 344566666643
No 195
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.26 E-value=1e-05 Score=67.41 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-------C--CC-----CCCC-------------
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PKLQ------------- 217 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~-------~--~~-----~~~~------------- 217 (278)
.+++++|.||++||++|....|.+.++.+++++. ++.+..|+++. . ++ .+++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3689999999999999999999999999999864 58888887631 0 11 0111
Q ss_pred ---------------------CcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 218 ---------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 218 ---------------------i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
+...|+.+++..++++ ..+|.|..+.++|.+.|++.+.
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV-v~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV-VERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE-EEEECCCCCHHHHHHHHHHHhc
Confidence 1124777777444433 2378899999999999988763
No 196
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.26 E-value=1.6e-05 Score=58.76 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=72.7
Q ss_pred ecCCceEEEEEeCc-cchHHHHH-HH--HHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecC-Cccee
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN-KAISK 109 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~-~~--~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~-~~~~~ 109 (278)
+.+++++|+|+++| .+|+.+.. .| .++.+.++..+.+..+|.+..+ +..+++.|++.++ |++ .+++. .+...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~-P~~-~~i~~~~g~~l 91 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY-PHI-AIIDPRTGEVL 91 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC-CeE-EEEeCccCcEe
Confidence 34688999999999 89999765 34 4566677767888888988633 3789999999999 999 77766 44456
Q ss_pred ecCCCCCChHHHHHHHHHHh
Q 023747 110 FLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 110 ~~~~g~~~~~~i~~fi~~~~ 129 (278)
+.+.|..+.+++..-+++..
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 67789999999998888765
No 197
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.24 E-value=5.8e-06 Score=63.81 Aligned_cols=77 Identities=16% Similarity=0.368 Sum_probs=55.5
Q ss_pred CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-C---------------------C-CCCCCc-
Q 023747 165 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---------------------H-PKLQVE- 219 (278)
Q Consensus 165 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~---------------------~-~~~~i~- 219 (278)
.+++++|.||++ ||++|....|.+.++++.++.. .+.+..|..+.+ . + ..|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 478899999999 9999999999999999997764 466666665433 1 1 123666
Q ss_pred --------CCCeEEEEeCCCccCceEecCCCC
Q 023747 220 --------EYPTLLFYPAGDKANPIKVSARSS 243 (278)
Q Consensus 220 --------~~Ptl~~f~~g~~~~~~~~~g~~~ 243 (278)
.+|+++++.+++++ .....|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V-~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKV-VYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBE-EEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEE-EEEEeCCCC
Confidence 89999999766655 224445443
No 198
>PLN02412 probable glutathione peroxidase
Probab=98.24 E-value=6.3e-06 Score=65.28 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=65.5
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC-------C--CC-----CCCC-------------
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA-------N--EH-----PKLQ------------- 217 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~-------~--~~-----~~~~------------- 217 (278)
.+++++|.||++||++|....|.+.++.++|++. ++.+..|+++. . ++ .+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 3689999999999999998899999999999864 58888887631 1 11 1111
Q ss_pred ---------------------CcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 218 ---------------------VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 218 ---------------------i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
+...|+.+++..++++ ..++.|..+.+++.+.|++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~v-v~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKV-VQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcE-EEEECCCCCHHHHHHHHHHHHhh
Confidence 2224677777443333 23678999999999999888763
No 199
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.23 E-value=8.2e-06 Score=60.95 Aligned_cols=80 Identities=10% Similarity=0.133 Sum_probs=61.4
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeC---------------------CCcccchhHHHHcCCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI---------------------ADEDLAKPFLTLFGLEE 93 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~---------------------~~~~~~~~l~~~~~i~~ 93 (278)
.++++++.||++| ++|....|.+.++++++. +..+.+|. +.. ..+++.|+|.+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~i~~ 93 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPD---GVISARWGVSV 93 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCC---cHHHHhCCCCc
Confidence 3478999999999 999999999999998843 22222222 222 57999999999
Q ss_pred CCceEEEEecCCcceeecCCCCCChHHHHH
Q 023747 94 SKNTVVTAFDNKAISKFLLESDLTPSNIEE 123 (278)
Q Consensus 94 ~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~ 123 (278)
. |++ .+++.++ ..+.+.|..+.+.|.+
T Consensus 94 ~-P~~-~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 94 T-PAI-VIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred c-cEE-EEEcCCC-eEEEEeccCCHHHHHh
Confidence 9 999 7777665 7777888888888754
No 200
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.23 E-value=1.2e-05 Score=58.59 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCc--------------------ccchhHHHHcCCCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE--------------------DLAKPFLTLFGLEES 94 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~-~~v~f~~vd~~~~--------------------~~~~~l~~~~~i~~~ 94 (278)
++++++.|+++| +.|+...+.+.++.+++. ..+.++.|+++.. +....+++.|++.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 578999999999 999999999999999996 3499999999873 011578999999999
Q ss_pred CceEEEEecCCcceeecCC
Q 023747 95 KNTVVTAFDNKAISKFLLE 113 (278)
Q Consensus 95 ~Ptl~~~~~~~~~~~~~~~ 113 (278)
|++ .+++.++...+.+.
T Consensus 99 -P~~-~l~d~~g~v~~~~~ 115 (116)
T cd02966 99 -PTT-FLIDRDGRIRARHV 115 (116)
T ss_pred -ceE-EEECCCCcEEEEec
Confidence 999 77775544455443
No 201
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.21 E-value=7.5e-06 Score=55.86 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=53.6
Q ss_pred EEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCCCCCCcCCCeEEEEeCCCccCceEecC-CCCHHHHHH
Q 023747 172 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHPKLQVEEYPTLLFYPAGDKANPIKVSA-RSSSKNIAA 249 (278)
Q Consensus 172 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g-~~~~~~l~~ 249 (278)
.+++++|++|..+...+++++..+. +.+-.+|.... ++.+|++.++|++++ +|+ +.+.| ..+.+.|.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~----~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK----VVFVGRVPSKEELKE 73 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE----EEEESS--HHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE----EEEEecCCCHHHHHH
Confidence 3478889999999999999999983 55566666443 557999999999976 553 37899 788899999
Q ss_pred HHH
Q 023747 250 FIK 252 (278)
Q Consensus 250 ~i~ 252 (278)
||.
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 202
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.18 E-value=1.5e-05 Score=60.57 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=52.4
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcc----------------------cchhHHHHcC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED----------------------LAKPFLTLFG 90 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~----------------------~~~~l~~~~~ 90 (278)
+++++|.||++| ++|+...|.++++++++++ .+.+..|+.+... ....+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 578999999999 9999999999999999875 3667666665431 0135677899
Q ss_pred CCCCCceEEEEecCC
Q 023747 91 LEESKNTVVTAFDNK 105 (278)
Q Consensus 91 i~~~~Ptl~~~~~~~ 105 (278)
|.++ |++ .+++.+
T Consensus 97 v~~i-Pt~-~lid~~ 109 (132)
T cd02964 97 VEGI-PTL-VVLKPD 109 (132)
T ss_pred CCCC-CEE-EEECCC
Confidence 9999 999 667644
No 203
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.18 E-value=8e-06 Score=59.41 Aligned_cols=66 Identities=27% Similarity=0.711 Sum_probs=56.3
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC-CC-CC-CCCC--CcCCCeEEEEeCCCcc
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS-AN-EH-PKLQ--VEEYPTLLFYPAGDKA 233 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~-~~-~~-~~~~--i~~~Ptl~~f~~g~~~ 233 (278)
++.+++.||++||++|+.+.|.+.+++..+.. .+.+..+|.. .. +. ..++ +..+|+++++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67889999999999999999999999999986 5889999986 44 44 4677 8999999998888754
No 204
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.17 E-value=1.2e-05 Score=60.83 Aligned_cols=68 Identities=12% Similarity=0.130 Sum_probs=52.5
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcc---------------------cchhHHHHcCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADED---------------------LAKPFLTLFGL 91 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~---------------------~~~~l~~~~~i 91 (278)
+++++|.||++| ++|+...|.+.++++++.+ .+.+..|+.+... ....+++.|||
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 468999999999 9999999999999999864 3666666655331 11467889999
Q ss_pred CCCCceEEEEecCCc
Q 023747 92 EESKNTVVTAFDNKA 106 (278)
Q Consensus 92 ~~~~Ptl~~~~~~~~ 106 (278)
.++ |++ .+++.++
T Consensus 98 ~~~-P~~-~lid~~G 110 (131)
T cd03009 98 EGI-PTL-IILDADG 110 (131)
T ss_pred CCC-CEE-EEECCCC
Confidence 999 999 7776443
No 205
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.16 E-value=1.4e-05 Score=61.55 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=53.6
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC--------ceEEEEEeCCCccc----------------------chh
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG--------KIMFTAVDIADEDL----------------------AKP 84 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~--------~v~f~~vd~~~~~~----------------------~~~ 84 (278)
.+++++|+|+++| ++|++..|.+.++++++++ .+.++.|+.+.... ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 3578999999999 9999999999999887753 37888887664311 136
Q ss_pred HHHHcCCCCCCceEEEEecCC
Q 023747 85 FLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 85 l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
++..|++.+. |++ .+++..
T Consensus 104 l~~~y~v~~i-Pt~-vlId~~ 122 (146)
T cd03008 104 LEAQFSVEEL-PTV-VVLKPD 122 (146)
T ss_pred HHHHcCCCCC-CEE-EEECCC
Confidence 7888999999 999 777654
No 206
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.14 E-value=2.6e-05 Score=61.95 Aligned_cols=89 Identities=11% Similarity=0.246 Sum_probs=65.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC---------CC----------------------
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---------EH---------------------- 213 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~---------~~---------------------- 213 (278)
.+++++++||++||+.|....+.+.++..++++. ++.+..|..+.. .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 4688999999999999999999999999999753 688888877541 10
Q ss_pred CCCCCcCCCeEEEEeCCCccCceEec-----------CCCCHHHHHHHHHHHhcc
Q 023747 214 PKLQVEEYPTLLFYPAGDKANPIKVS-----------ARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 214 ~~~~i~~~Ptl~~f~~g~~~~~~~~~-----------g~~~~~~l~~~i~~~~~~ 257 (278)
..|++...|+++++..++++ .|. +..+...+.+.|+..+.-
T Consensus 103 ~~~~v~~~P~~~lid~~G~v---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL---VYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE---EEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 13367789999999655443 333 234667888888877753
No 207
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.14 E-value=7.4e-06 Score=66.77 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
.+++++|.||++||++|....|.+.++..++.+. ++.+..|+++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 3689999999999999999999999999999764 5888888763
No 208
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.12 E-value=1.1e-05 Score=69.03 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=72.7
Q ss_pred CCeEEEcccchHHHhhcCCCcEEEEEECCCChhHH-----HHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcC
Q 023747 148 ANVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCE-----TTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEE 220 (278)
Q Consensus 148 ~~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~-----~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~ 220 (278)
..|..++.+||.+.+ +..+..+|+||.|--+.-. ++...+.+++...-....+.||.||..++ .+ .++++..
T Consensus 34 DRVi~LneKNfk~~l-Kkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 34 DRVIDLNEKNFKRAL-KKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp --CEEE-TTTHHHHH-HH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred cceEEcchhHHHHHH-HhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 468999999999976 5567788888887532211 12233334444443333799999999998 66 4889999
Q ss_pred CCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcccC
Q 023747 221 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 259 (278)
Q Consensus 221 ~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 259 (278)
.+++++|++|+.+ .|.|.++.+-|+.||.+.++...
T Consensus 113 ~~SiyVfkd~~~I---EydG~~saDtLVeFl~dl~edPV 148 (383)
T PF01216_consen 113 EGSIYVFKDGEVI---EYDGERSADTLVEFLLDLLEDPV 148 (383)
T ss_dssp TTEEEEEETTEEE---EE-S--SHHHHHHHHHHHHSSSE
T ss_pred cCcEEEEECCcEE---EecCccCHHHHHHHHHHhcccch
Confidence 9999999999854 89999999999999999998543
No 209
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.5e-05 Score=64.47 Aligned_cols=115 Identities=14% Similarity=0.311 Sum_probs=87.5
Q ss_pred CCCCeEEEcccchHHHhhcCCCc--EEEEEECC----CChhHHHHHHHHHHHHHHhcCCC------ceEEEEEeCCCC-C
Q 023747 146 TNANVQIVVGKTFDDLVLNSHKD--VLLEVYTP----WCVTCETTSKQIEKLAKHFKGLD------NLVIAKIDASAN-E 212 (278)
Q Consensus 146 ~~~~v~~l~~~~~~~~i~~~~~~--~~v~f~~~----~c~~c~~~~~~~~~~a~~~~~~~------~~~~~~vd~~~~-~ 212 (278)
.+..|..++++.|..++....+. ++|+|.|. .|.-|.+...+|..+|..+...+ ++.|+.||.++. +
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 34569999999999999866554 47788874 69999999999999999984322 689999999987 4
Q ss_pred C-CCCCCcCCCeEEEEeCC--CccCceEec---CCCCHHHHHHHHHHHhcccCC
Q 023747 213 H-PKLQVEEYPTLLFYPAG--DKANPIKVS---ARSSSKNIAAFIKEQLKEKDQ 260 (278)
Q Consensus 213 ~-~~~~i~~~Ptl~~f~~g--~~~~~~~~~---g~~~~~~l~~~i~~~~~~~~~ 260 (278)
. +.++++++|++++|+.. +..+...+. -....+++.+|+.+.......
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 4 78999999999999432 222221222 235589999999999887654
No 210
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.09 E-value=1.9e-05 Score=61.56 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 208 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~ 208 (278)
+++++|.||++||++|....|.+.++.+.++.. ++.+..|++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 678999999999999999999999999999764 588888875
No 211
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.09 E-value=2.2e-05 Score=79.04 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=73.0
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC---Cc---------------------ccchhHHHHc
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA---DE---------------------DLAKPFLTLF 89 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~---~~---------------------~~~~~l~~~~ 89 (278)
.+++++|.||++| ++|+...|.+++++++|+++ +.++.|.+. .. +....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 3679999999999 99999999999999999875 777776431 10 0124678899
Q ss_pred CCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHhc
Q 023747 90 GLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 90 ~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 130 (278)
+|.+. |++ .+++..+.....+.|....+.+.++++..+.
T Consensus 499 ~V~~i-Pt~-ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSW-PTF-AVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCcc-ceE-EEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999 999 7776444455567888899999999988753
No 212
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.08 E-value=1.1e-05 Score=54.93 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=46.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC-----CCCcCCCeEEEEeCCCccCceEecCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK-----LQVEEYPTLLFYPAGDKANPIKVSARS 242 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~-----~~i~~~Ptl~~f~~g~~~~~~~~~g~~ 242 (278)
++.|+++||++|+.+.+.+.+++ +.+-.+|++++ .. .. +++.++|++ ++.+|... ...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l------~~~ 66 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL------TNP 66 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe------cCC
Confidence 57899999999999988876553 44556777766 33 23 378899997 46666422 255
Q ss_pred CHHHHHHHHH
Q 023747 243 SSKNIAAFIK 252 (278)
Q Consensus 243 ~~~~l~~~i~ 252 (278)
+..++.+.|.
T Consensus 67 ~~~~~~~~l~ 76 (77)
T TIGR02200 67 SAAQVKAKLQ 76 (77)
T ss_pred CHHHHHHHhh
Confidence 6667666553
No 213
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.06 E-value=5.3e-05 Score=60.24 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=65.7
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc----------cchhHHHHcCC--CCCCceEEEEecCCcc
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED----------LAKPFLTLFGL--EESKNTVVTAFDNKAI 107 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~----------~~~~l~~~~~i--~~~~Ptl~~~~~~~~~ 107 (278)
+|.||++| ++|++..|.+.+++++|. +.+..|+.++.. ....+.+.||+ .++ |+. ++++.++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i-Ptt-fLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT-PTT-FLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC-CeE-EEEeCCCc
Confidence 78899999 999999999999999985 555555544331 11347778995 588 999 88876655
Q ss_pred eee-cCCCCCChHHHHHHHHHHhc
Q 023747 108 SKF-LLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 108 ~~~-~~~g~~~~~~i~~fi~~~~~ 130 (278)
..+ .+.|..+.+++.+.+...+.
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHh
Confidence 544 56899999999998888764
No 214
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.06 E-value=1.8e-05 Score=50.81 Aligned_cols=58 Identities=22% Similarity=0.552 Sum_probs=47.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-C----CCCCCcCCCeEEEEeCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H----PKLQVEEYPTLLFYPAG 230 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-~----~~~~i~~~Ptl~~f~~g 230 (278)
++.|+++||++|..+.+.+.++ ..... ++.+..++++... . ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 6999999988873 2 26688999999999876
No 215
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.04 E-value=1.4e-05 Score=53.61 Aligned_cols=67 Identities=15% Similarity=0.391 Sum_probs=49.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-----CCCCCcCCCeEEEEeCCCccCceEecCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-----PKLQVEEYPTLLFYPAGDKANPIKVSARSS 243 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-----~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~ 243 (278)
+.+|+++||++|..+.+.+.+ . ++.+..+|++.+ .. ..+++.++|++++. |+ ...| .+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~---~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~-----~~~g-~~ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----K---GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK-----IIVG-FD 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----C---CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE-----EEee-CC
Confidence 568999999999998877765 1 477888888876 22 24689999999984 32 2444 57
Q ss_pred HHHHHHHHH
Q 023747 244 SKNIAAFIK 252 (278)
Q Consensus 244 ~~~l~~~i~ 252 (278)
.+.|.+||+
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 788888874
No 216
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.02 E-value=2e-05 Score=57.93 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=47.6
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
.++++++.||++| ++|+...|.++++++.+.+.+.++.+..+..+....+++++++..+ |++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~-p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAF-PYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCC-cEE
Confidence 3678999999999 9999999999999999877666655522222222578888898888 877
No 217
>smart00594 UAS UAS domain.
Probab=98.00 E-value=7.4e-05 Score=55.93 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=67.0
Q ss_pred eecCCceEEEEEeCc-cchHHHHHH-H--HHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc--
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEP-L--EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI-- 107 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~-~--~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~-- 107 (278)
.+.++.++|+|+++| .+|..+... | .++.+.++..+.+..+|.+..+. .+++..|++.++ |++ .+++...+
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~~~~~-P~~-~~l~~~~g~~ 100 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYKLDSF-PYV-AIVDPRTGQR 100 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcCcCCC-CEE-EEEecCCCce
Confidence 345678999999999 999887654 2 34555666678888888886644 799999999999 999 66654431
Q ss_pred ---eeecCCCCCChHHHHHHH
Q 023747 108 ---SKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 108 ---~~~~~~g~~~~~~i~~fi 125 (278)
....+.|..+.+++..++
T Consensus 101 ~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 101 VIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred eEEEeccccCCCCHHHHHHhh
Confidence 233467889999988876
No 218
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.00 E-value=7.3e-05 Score=61.56 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=60.7
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC------------CC-CCCCCcCCCeEEEEeCCC-
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN------------EH-PKLQVEEYPTLLFYPAGD- 231 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~------------~~-~~~~i~~~Ptl~~f~~g~- 231 (278)
++.-+++||.+.|++|..+.|++..++..+. +.+..|+.|.. .. .++++..+|++++...+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 6677999999999999999999999999994 55555555532 22 356899999999996654
Q ss_pred ccCceEecCCCCHHHHHHH
Q 023747 232 KANPIKVSARSSSKNIAAF 250 (278)
Q Consensus 232 ~~~~~~~~g~~~~~~l~~~ 250 (278)
...+ .-.|..+.++|.+=
T Consensus 196 ~~~p-v~~G~~s~~~L~~r 213 (215)
T PF13728_consen 196 KWYP-VSQGFMSLDELEDR 213 (215)
T ss_pred eEEE-EeeecCCHHHHHHh
Confidence 3322 44678888888753
No 219
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.97 E-value=4.2e-05 Score=53.33 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=56.2
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCC---CCCCcCCCeEEEEeCCCccCceEecC
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EHP---KLQVEEYPTLLFYPAGDKANPIKVSA 240 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-----~~~---~~~i~~~Ptl~~f~~g~~~~~~~~~g 240 (278)
-+++|+.+||++|......+++++..+. ++.+..+|++.+ ++. ..+...+|++++ +|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i------g 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI------G 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE------c
Confidence 4788999999999999999999987764 478888888764 232 224578999864 66533 2
Q ss_pred CCCHHHHHHHHHHHhc
Q 023747 241 RSSSKNIAAFIKEQLK 256 (278)
Q Consensus 241 ~~~~~~l~~~i~~~~~ 256 (278)
..++|.++++++++
T Consensus 71 --g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 --GCTDFEAYVKENLG 84 (85)
T ss_pred --CHHHHHHHHHHhcc
Confidence 45789999988875
No 220
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.97 E-value=6.8e-05 Score=56.33 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=55.2
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc---cc---------------------chhHHHHc
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE---DL---------------------AKPFLTLF 89 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~---~~---------------------~~~l~~~~ 89 (278)
.++++++.||+.| ++|....|.+++++++|++ .+.+..|+.... +. ...+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 3478999999999 9999999999999999985 377777765210 00 23566678
Q ss_pred CCCCCCceEEEEecCCcceeecCCC
Q 023747 90 GLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 90 ~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
++.+. |+. .+++.++...+.+.|
T Consensus 102 ~v~~~-P~~-~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYW-PAL-YLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcC-CeE-EEECCCCcEEEEEec
Confidence 88887 888 667655444554433
No 221
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.92 E-value=2.5e-05 Score=66.22 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=68.9
Q ss_pred cCCcccccccCC-CCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcC
Q 023747 13 LPKSCTLISNLP-TTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFG 90 (278)
Q Consensus 13 ~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~ 90 (278)
.|....+..+.. ..+-..+........++|+||.+. ..|..+...|..||.+|.. ++|++|..... + ++..|.
T Consensus 121 ~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~---~-~~~~f~ 195 (265)
T PF02114_consen 121 GPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC---P-ASENFP 195 (265)
T ss_dssp -----SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC---C-TTTTS-
T ss_pred CCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc---C-cccCCc
Confidence 355555555533 334444444444567899999999 9999999999999999998 99999998876 4 788899
Q ss_pred CCCCCceEEEEecCCcceee----cCCC-CCChHHHHHHHHHH
Q 023747 91 LEESKNTVVTAFDNKAISKF----LLES-DLTPSNIEEFCSRL 128 (278)
Q Consensus 91 i~~~~Ptl~~~~~~~~~~~~----~~~g-~~~~~~i~~fi~~~ 128 (278)
+.+. |||+.|.+|.....+ ...| +.+..+|..|+.++
T Consensus 196 ~~~L-PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 196 DKNL-PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp TTC--SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred ccCC-CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999 999555543322221 1122 47888898888873
No 222
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.91 E-value=6.5e-05 Score=60.02 Aligned_cols=84 Identities=12% Similarity=0.075 Sum_probs=55.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHH-hcCCCceEEEEEeCCC-----------------------------C-CC-
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKH-FKGLDNLVIAKIDASA-----------------------------N-EH- 213 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~-~~~~~~~~~~~vd~~~-----------------------------~-~~- 213 (278)
+++++|.|||.||++|+.-.|.+.+++.. +.-+.--...-||.++ + ..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~ 138 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVK 138 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHH
Confidence 89999999999999999999999999653 2210000113333332 1 11
Q ss_pred CCCCCcCCCeE-EEEeCCCccCceEecCCCCHHHHHHH
Q 023747 214 PKLQVEEYPTL-LFYPAGDKANPIKVSARSSSKNIAAF 250 (278)
Q Consensus 214 ~~~~i~~~Ptl-~~f~~g~~~~~~~~~g~~~~~~l~~~ 250 (278)
..|++.++|+- +++...+++ ...+.|..+.+++.+.
T Consensus 139 ~~~gv~~~P~T~fVIDk~GkV-v~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 139 NAWQLNSEDSAIIVLDKTGKV-KFVKEGALSDSDIQTV 175 (184)
T ss_pred HhcCCCCCCceEEEECCCCcE-EEEEeCCCCHHHHHHH
Confidence 24578889777 677555544 3478898888777663
No 223
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.89 E-value=0.00021 Score=57.43 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCcE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 166 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 166 ~~~~-~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
++++ ++.+|++||++|....|.++++.+++++. ++.+..|+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence 5654 55679999999999999999999999764 5888888753
No 224
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.89 E-value=7.1e-05 Score=53.36 Aligned_cols=88 Identities=15% Similarity=0.327 Sum_probs=63.9
Q ss_pred chHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeEEEEeCCCccCc
Q 023747 157 TFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYPAGDKANP 235 (278)
Q Consensus 157 ~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl~~f~~g~~~~~ 235 (278)
.+.+++ ...+.++|.|+.++|+ .....|.++|..++. .+.|+.+.- .++ .++.+ .-|++++|+..... +
T Consensus 9 ~l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~--~~~~~~~~~-~~~~i~l~~~~~~~-~ 78 (97)
T cd02981 9 ELEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSD--KEVAKKLKV-KPGSVVLFKPFEEE-P 78 (97)
T ss_pred HHHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEECh--HHHHHHcCC-CCCceEEeCCcccC-C
Confidence 344444 5678888899998876 456789999999987 588877772 233 34554 45899999765332 4
Q ss_pred eEecCCCCHHHHHHHHHHH
Q 023747 236 IKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 236 ~~~~g~~~~~~l~~~i~~~ 254 (278)
..|.|..+.++|.+||..+
T Consensus 79 ~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 79 VEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred ccCCCCCCHHHHHHHHHhC
Confidence 5799999999999999753
No 225
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00013 Score=58.98 Aligned_cols=172 Identities=12% Similarity=0.150 Sum_probs=102.3
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
.....++.|+++| ..|+.+...+..+++.. .++.|.+++.+.. +.++..+.+... |+++.++.+....+. .|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~---~eis~~~~v~~v-p~~~~~~~~~~v~~l--~~ 88 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEF---PEISNLIAVEAV-PYFVFFFLGEKVDRL--SG 88 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhh---hHHHHHHHHhcC-ceeeeeecchhhhhh--hc
Confidence 6678899999999 99999999999999999 5599999999999 999999999999 999555554433332 33
Q ss_pred CCChHHHHHHHHHHhcCcccccccCCCCCCCCCCCeEEEc--cc-chHHHhhcC-CCcEEEEEE-----CCCChhHHHHH
Q 023747 115 DLTPSNIEEFCSRLLHGTLTPYLKSQPIPDNTNANVQIVV--GK-TFDDLVLNS-HKDVLLEVY-----TPWCVTCETTS 185 (278)
Q Consensus 115 ~~~~~~i~~fi~~~~~~~~~~~~~s~~~p~~~~~~v~~l~--~~-~~~~~i~~~-~~~~~v~f~-----~~~c~~c~~~~ 185 (278)
....... .-+......... .+... ....+.+.. .+ .++.-+... +...++.|- .|.|+..+.+.
T Consensus 89 ~~~~~~~-~~~~~~~~~~~~---~~~~~---~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v 161 (227)
T KOG0911|consen 89 ADPPFLV-SKVEKLAESGSA---SLGMG---LSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV 161 (227)
T ss_pred cCcHHHH-HHHHHhhhhccc---ccCCC---CCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence 3222222 222222111110 00000 111111100 00 133333222 233445554 46787776654
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCC-CCC----CC-CCcCCCeEEEEeCCC
Q 023747 186 KQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KL-QVEEYPTLLFYPAGD 231 (278)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~----~~-~i~~~Ptl~~f~~g~ 231 (278)
.+++.. ++.+...|+..+ ++. .| +...+|.+++ +|+
T Consensus 162 ~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI--~GE 203 (227)
T KOG0911|consen 162 GILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV--KGE 203 (227)
T ss_pred HHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeE--CCE
Confidence 444332 577999998877 442 33 5666777665 664
No 226
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.85 E-value=0.00017 Score=52.92 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=74.7
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHH---hcCCCceEEEEEeCCCCCC--CCCCCcC--CC
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKH---FKGLDNLVIAKIDASANEH--PKLQVEE--YP 222 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~---~~~~~~~~~~~vd~~~~~~--~~~~i~~--~P 222 (278)
|+.++.++...+. ..+-+..++|+++ ..-..+...+..+|+. +++ ++.|+.+|.+..+. .-++++. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 5678888888765 5555555555533 2346788999999999 998 79999999988743 4567776 99
Q ss_pred eEEEEeCCCccCceE-ecCCCCHHHHHHHHHHHhc
Q 023747 223 TLLFYPAGDKANPIK-VSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 223 tl~~f~~g~~~~~~~-~~g~~~~~~l~~~i~~~~~ 256 (278)
.+.+..... ...+. +.+..+.++|.+|+.+.+.
T Consensus 76 ~i~i~~~~~-~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRH-MYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchh-cCcCCCCccccCHHHHHHHHHHHhc
Confidence 999986533 22233 5678999999999998764
No 227
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=60.64 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=51.3
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCC--CCC-------------------------CC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN--EHP-------------------------KL 216 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~-~~~~~~vd~~~~--~~~-------------------------~~ 216 (278)
.++.+.++|-|.||++|+.|.|.+.++...++.+. .+.++.|+.|.. +.. +|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 36999999999999999999999999999998753 255555555442 211 33
Q ss_pred CCcCCCeEEEEe-CCCcc
Q 023747 217 QVEEYPTLLFYP-AGDKA 233 (278)
Q Consensus 217 ~i~~~Ptl~~f~-~g~~~ 233 (278)
.+.++|++++.+ +|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 688999999885 44433
No 228
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00023 Score=54.20 Aligned_cols=88 Identities=22% Similarity=0.332 Sum_probs=64.0
Q ss_pred hcCCCcEEEEEECCCChhHHHHHHHHH---HHHHHhcCCCceEEEEEeCCCC-----------------CC-CCCCCcCC
Q 023747 163 LNSHKDVLLEVYTPWCVTCETTSKQIE---KLAKHFKGLDNLVIAKIDASAN-----------------EH-PKLQVEEY 221 (278)
Q Consensus 163 ~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~a~~~~~~~~~~~~~vd~~~~-----------------~~-~~~~i~~~ 221 (278)
...++..+++|-++.|++|..+...+. ++.+.+++ ++.+++++++.. ++ ..+.++++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 345889999999999999999887654 56666776 688888887543 11 24589999
Q ss_pred CeEEEEeCCCccCceEecCCCCHHHHHHHHHH
Q 023747 222 PTLLFYPAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 222 Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
|++++|...++. .....|-+..+++..-++-
T Consensus 117 PtfvFfdk~Gk~-Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 117 PTFVFFDKTGKT-ILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred ceEEEEcCCCCE-EEecCCCCCHHHHHHHHHH
Confidence 999999654332 2255777888887766653
No 229
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.79 E-value=0.00029 Score=57.43 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=63.9
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCC--------cccchhHHHHcCCCCCCceE--------
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIAD--------EDLAKPFLTLFGLEESKNTV-------- 98 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~--------~~~~~~l~~~~~i~~~~Ptl-------- 98 (278)
+++++|.|+++| ++|....|.+.+++++|.++ +.+..|+|+. ......+++++++. + |.+
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-f-pvl~d~~v~g~ 116 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-Y-NFFEPIEVNGE 116 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-c-eeeeeeeccCC
Confidence 578999999999 99999999999999999864 8999998742 11124566666652 2 322
Q ss_pred -------------------------------EEEecCCcceeecCCCCCChHHHHHHHHHHhc
Q 023747 99 -------------------------------VTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 99 -------------------------------~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 130 (278)
..+++..+...+.+.|..+.+.+.+.++..++
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 13444444444455666777777777777663
No 230
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.79 E-value=0.00053 Score=54.39 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=73.2
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc------cc--------------------chhHHH
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE------DL--------------------AKPFLT 87 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~------~~--------------------~~~l~~ 87 (278)
.+++++++||.+| +.|....+.+.+++++|.+ .+.|+.|..+.. +. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5678999999999 9999999999999999974 588888877642 00 246778
Q ss_pred HcCCCCCCceEEEEecCCcceeecC---------CCCCChHHHHHHHHHHhcCccc
Q 023747 88 LFGLEESKNTVVTAFDNKAISKFLL---------ESDLTPSNIEEFCSRLLHGTLT 134 (278)
Q Consensus 88 ~~~i~~~~Ptl~~~~~~~~~~~~~~---------~g~~~~~~i~~fi~~~~~~~~~ 134 (278)
.||+... |++ .+++.++...|.. .+..+..++.+-|+..+.++-.
T Consensus 104 ~~~v~~~-P~~-~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 157 (171)
T cd02969 104 AYGAACT-PDF-FLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPV 157 (171)
T ss_pred HcCCCcC-CcE-EEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCC
Confidence 8999988 999 7787655444431 1235678899999999877543
No 231
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.78 E-value=0.00036 Score=58.66 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-------------CCCCCcCCCeEEEEeCC-C
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-------------PKLQVEEYPTLLFYPAG-D 231 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-------------~~~~i~~~Ptl~~f~~g-~ 231 (278)
++.-+++||...|++|..+.|.+..++..+. +.+..|++|...+ .++++..+|++++...+ +
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 5577999999999999999999999999995 5555555554421 25579999999998655 3
Q ss_pred ccCceEecCCCCHHHHHHHHHHHh
Q 023747 232 KANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 232 ~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
...+ .-.|.++.++|.+=|..-+
T Consensus 226 ~~~p-v~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 226 KMSP-LAYGFISQDELKERILNVL 248 (256)
T ss_pred cEEE-EeeccCCHHHHHHHHHHHH
Confidence 3322 3457899999877665443
No 232
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.78 E-value=0.0001 Score=58.14 Aligned_cols=83 Identities=24% Similarity=0.389 Sum_probs=70.2
Q ss_pred CCeEEEc-ccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC--CCCCCcCCCeE
Q 023747 148 ANVQIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKLQVEEYPTL 224 (278)
Q Consensus 148 ~~v~~l~-~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~--~~~~i~~~Ptl 224 (278)
+....+. ..+|-+.+. ....++++||-|.-..|+.+...++.+|+.+-+ ..|.+||+....+ .+++|..+|++
T Consensus 66 G~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeE
Confidence 3466665 577877763 455689999999999999999999999999885 6999999998865 59999999999
Q ss_pred EEEeCCCccC
Q 023747 225 LFYPAGDKAN 234 (278)
Q Consensus 225 ~~f~~g~~~~ 234 (278)
.+|++|..+.
T Consensus 142 ~l~k~g~~~D 151 (211)
T KOG1672|consen 142 ALFKNGKTVD 151 (211)
T ss_pred EEEEcCEEEE
Confidence 9999998764
No 233
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.73 E-value=0.00073 Score=51.10 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=73.7
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECC--CChh-H-HHHHHHHHHHHHHhcCCCc-eEEEEEeCCCC-CC-CCCCCc--
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTP--WCVT-C-ETTSKQIEKLAKHFKGLDN-LVIAKIDASAN-EH-PKLQVE-- 219 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~--~c~~-c-~~~~~~~~~~a~~~~~~~~-~~~~~vd~~~~-~~-~~~~i~-- 219 (278)
.|.++++++..+..=..++.-+|.|.-. .|.. + ..+...+.++|+.|++ + +.|+.+|.+.+ .+ ..+++.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence 3777887766443222233334444321 1322 2 4678899999999999 6 99999999988 44 467874
Q ss_pred CCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 220 EYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 220 ~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
.+|+++++...+. +...+.|..+.++|.+|+.+.+.=
T Consensus 81 ~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 81 GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence 5999999976442 221277999999999999998853
No 234
>PLN02412 probable glutathione peroxidase
Probab=97.70 E-value=0.00024 Score=56.22 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=37.0
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 77 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~ 77 (278)
.+++++|.||++| +.|....|.+.++.++|++. +.+..|+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3578899999999 89999999999999999865 999999875
No 235
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.70 E-value=0.00057 Score=57.18 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=61.8
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----------CCCCCcCCCeEEEEeCCC-cc
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----------PKLQVEEYPTLLFYPAGD-KA 233 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~----------~~~~i~~~Ptl~~f~~g~-~~ 233 (278)
++.-+++||...|++|..+.|.+..++..+.= .+..+.+|.... .+ .++++..+|++++...+. ..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 55789999999999999999999999999953 344444443211 11 246889999999996554 33
Q ss_pred CceEecCCCCHHHHHHHHHHH
Q 023747 234 NPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 234 ~~~~~~g~~~~~~l~~~i~~~ 254 (278)
.+ .-.|.++.++|.+=|..-
T Consensus 221 ~p-v~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 221 RP-LSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EE-EeeccCCHHHHHHHHHHH
Confidence 23 345788999887765543
No 236
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.69 E-value=0.00019 Score=53.06 Aligned_cols=74 Identities=26% Similarity=0.499 Sum_probs=48.5
Q ss_pred cchHHHhhc---CCCcEEEEEEC-------CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CC---C
Q 023747 156 KTFDDLVLN---SHKDVLLEVYT-------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------EH---P 214 (278)
Q Consensus 156 ~~~~~~i~~---~~~~~~v~f~~-------~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--------~~---~ 214 (278)
++|.+++.. .++.++|+|++ +||+.|....|.++++-..... +..++.+.+... .+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcc
Confidence 445555533 46788999985 5999999999999998888655 567777766322 22 2
Q ss_pred CCCCcCCCeEEEEeCCC
Q 023747 215 KLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 215 ~~~i~~~Ptl~~f~~g~ 231 (278)
+++++.+|||+-+..++
T Consensus 84 ~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGE 100 (119)
T ss_dssp CC---SSSEEEECTSS-
T ss_pred eeeeeecceEEEECCCC
Confidence 57999999999997663
No 237
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.69 E-value=0.00023 Score=54.84 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=60.3
Q ss_pred cCCceEEEEEeC-c-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCccc------------------chhHHHHcCCC--
Q 023747 36 IDTLDMVYVFAK-A-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADEDL------------------AKPFLTLFGLE-- 92 (278)
Q Consensus 36 ~~~~~~v~F~~~-~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~~------------------~~~l~~~~~i~-- 92 (278)
.+++++|.||++ | ++|....|.+.++++.|+++ +.++.|..+.... ...+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 567889999999 9 99999999999999997754 7776666554422 35788899988
Q ss_pred -------CCCceEEEEecCCcceeecCCCCCC
Q 023747 93 -------ESKNTVVTAFDNKAISKFLLESDLT 117 (278)
Q Consensus 93 -------~~~Ptl~~~~~~~~~~~~~~~g~~~ 117 (278)
++ |++ .+++..+...+...|...
T Consensus 107 ~~~~~~~~~-P~~-~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 107 EDPGNGFGI-PTT-FLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp CCTTTTSSS-SEE-EEEETTSBEEEEEESSBT
T ss_pred cccccCCee-cEE-EEEECCCEEEEEEeCCCC
Confidence 88 999 666666556665555433
No 238
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.69 E-value=9e-05 Score=57.67 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
+++++|.||++||+ |....|.++++..+++.. ++.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 68999999999999 999999999999999754 5888888653
No 239
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.69 E-value=0.00015 Score=55.35 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=56.2
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----------------------CCCCcCC
Q 023747 166 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----------------------KLQVEEY 221 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~----------------------~~~i~~~ 221 (278)
+++++|.|| +.||+.|....+.+.++...+... ++.++.|..+.. .+. .|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 788999999 589999999999999999988653 467777665432 111 2245555
Q ss_pred ---------CeEEEEeCCCccCceEecCCCCHHHHHH
Q 023747 222 ---------PTLLFYPAGDKANPIKVSARSSSKNIAA 249 (278)
Q Consensus 222 ---------Ptl~~f~~g~~~~~~~~~g~~~~~~l~~ 249 (278)
|+.+++..++++ ...+.|....+++.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v-~~~~~g~~~~~~~~~ 137 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKI-VKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccCCcceeEEEECCCCEE-EEEEecCCccchHHH
Confidence 888888654444 235677666555544
No 240
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.66 E-value=8e-05 Score=51.47 Aligned_cols=56 Identities=16% Similarity=0.356 Sum_probs=40.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC------C-CCCCCcCCCeEEEEeCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE------H-PKLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~------~-~~~~i~~~Ptl~~f~~g~ 231 (278)
++.|+++||++|..+.+.+.+++ ... .+.+..+|.+.+. + ...++.++|++++ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 47899999999999999999886 322 3677777766442 2 2347889999853 554
No 241
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.64 E-value=0.00015 Score=54.00 Aligned_cols=46 Identities=22% Similarity=0.496 Sum_probs=39.6
Q ss_pred CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 165 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 165 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
.+++++|.||+. ||+.|....+.+.++...++.. ++.+..|..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccc
Confidence 468999999999 9999999999999999999854 588888887653
No 242
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.64 E-value=0.0012 Score=53.26 Aligned_cols=91 Identities=10% Similarity=0.044 Sum_probs=62.0
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEe-------------CC--CcccchhHHHHcCCCCCCceEE
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVD-------------IA--DEDLAKPFLTLFGLEESKNTVV 99 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd-------------~~--~~~~~~~l~~~~~i~~~~Ptl~ 99 (278)
.+++++++||++| ++|++..|.+.++.+++...+.++..| .+ .......+++.|++.+. |+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~-P~~- 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI-PYG- 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc-ceE-
Confidence 4578999999999 999999999999988765445444311 00 00002577888999988 998
Q ss_pred EEecCCcceeecCCCC-CChHHHHHHHHHHhc
Q 023747 100 TAFDNKAISKFLLESD-LTPSNIEEFCSRLLH 130 (278)
Q Consensus 100 ~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~~~ 130 (278)
.+++.++...+ .|. .+.+.+.+.++....
T Consensus 151 ~lID~~G~I~~--~g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 151 VLLDQDGKIRA--KGLTNTREHLESLLEADRE 180 (189)
T ss_pred EEECCCCeEEE--ccCCCCHHHHHHHHHHHHc
Confidence 77775544444 454 466777777776543
No 243
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.62 E-value=0.00078 Score=56.17 Aligned_cols=92 Identities=17% Similarity=0.094 Sum_probs=65.4
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCc------c--cchhHH-HHcCCC-------------
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE------D--LAKPFL-TLFGLE------------- 92 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~------~--~~~~l~-~~~~i~------------- 92 (278)
+++++|.||++| ++|....|.+.+++++|+++ +.++.|+++.. + ...+++ +++++.
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~ 178 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPS 178 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcch
Confidence 478999999999 99999999999999999865 88988887521 0 112332 333331
Q ss_pred ---------------------CCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHhc
Q 023747 93 ---------------------ESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 93 ---------------------~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~ 130 (278)
.. |+. .+++.++...+.+.|..+.++|.+.++++++
T Consensus 179 ~~~~y~~l~~~~~~~~g~~i~~~-Ptt-fLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 179 TAPVYQFLKSNAGGFLGDLIKWN-FEK-FLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhHHHHHHHHhcCCccCCccccC-ceE-EEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 12 555 5666555566667788888888888887763
No 244
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.60 E-value=0.00011 Score=55.48 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=44.1
Q ss_pred ccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC---CCCcCCCeEEEEeC
Q 023747 155 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK---LQVEEYPTLLFYPA 229 (278)
Q Consensus 155 ~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~---~~i~~~Ptl~~f~~ 229 (278)
.+....+.....+..++.|..+||+.|....|.+.+++.... ++.+..+..+.+ +. .+ .+...+|+++++.+
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~ 106 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK 106 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence 344443333345567889999999999999999999999864 356666655555 33 33 47889999999965
Q ss_pred C
Q 023747 230 G 230 (278)
Q Consensus 230 g 230 (278)
+
T Consensus 107 ~ 107 (129)
T PF14595_consen 107 D 107 (129)
T ss_dssp T
T ss_pred C
Confidence 4
No 245
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.59 E-value=0.00048 Score=50.58 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=67.7
Q ss_pred EEcccchHHHhhcCCCcEEEEEE----CCCChhHHHHHHHHHHHHHHhc-CCCceEEEEEeCCCCC-C-CCCCCc--C--
Q 023747 152 IVVGKTFDDLVLNSHKDVLLEVY----TPWCVTCETTSKQIEKLAKHFK-GLDNLVIAKIDASANE-H-PKLQVE--E-- 220 (278)
Q Consensus 152 ~l~~~~~~~~i~~~~~~~~v~f~----~~~c~~c~~~~~~~~~~a~~~~-~~~~~~~~~vd~~~~~-~-~~~~i~--~-- 220 (278)
.++.++..... .++.++.|+ +..-..-..+...+.++|+.++ + ++.|+.+|.+... . ..++++ .
T Consensus 3 ~~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~ 77 (111)
T cd03073 3 HRTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGE 77 (111)
T ss_pred eeccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence 45666766653 445555554 2233344678899999999999 6 7999999988763 3 456776 4
Q ss_pred CCeEEEEeCCCccCceEecCCC-CHHHHHHHHHHH
Q 023747 221 YPTLLFYPAGDKANPIKVSARS-SSKNIAAFIKEQ 254 (278)
Q Consensus 221 ~Ptl~~f~~g~~~~~~~~~g~~-~~~~l~~~i~~~ 254 (278)
+|++.++..++ . .+...+.. +.++|.+|+.+.
T Consensus 78 ~P~~~i~~~~~-~-KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 78 KPVVAIRTAKG-K-KYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCEEEEEeCCC-C-ccCCCcccCCHHHHHHHHHHh
Confidence 99999987543 2 23346778 999999999864
No 246
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.58 E-value=1.9e-05 Score=64.07 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=72.9
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
.-|++.|+++| +.|+.+.|+|...|.--.| .|.++.||.+.+ +.|.-+|-+... |||+..+++. -.+| .|.
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n---pgLsGRF~vtaL-ptIYHvkDGe-Frry--sga 112 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN---PGLSGRFLVTAL-PTIYHVKDGE-FRRY--SGA 112 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec---cccceeeEEEec-ceEEEeeccc-cccc--cCc
Confidence 34999999999 9999999999999987766 399999999999 899999999999 9996665543 4455 999
Q ss_pred CChHHHHHHHHHHh
Q 023747 116 LTPSNIEEFCSRLL 129 (278)
Q Consensus 116 ~~~~~i~~fi~~~~ 129 (278)
++..+++.|+....
T Consensus 113 Rdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 113 RDKNDFISFEEHRE 126 (248)
T ss_pred ccchhHHHHHHhhh
Confidence 99999999998753
No 247
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.57 E-value=0.00041 Score=49.35 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=62.8
Q ss_pred eeecCCceEEEEEeCccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC
Q 023747 33 VSQIDTLDMVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL 112 (278)
Q Consensus 33 ~~~~~~~~~v~F~~~~~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~ 112 (278)
......+++|.|+.++ +......|.++|..+++.+.|+.+. . ..+.+++++.. |++ .++......+..|
T Consensus 13 ~~~~~~~~vvg~f~~~--~~~~~~~f~~~A~~~r~~~~F~~~~---~---~~~~~~~~~~~--~~i-~l~~~~~~~~~~y 81 (97)
T cd02981 13 FLDKDDVVVVGFFKDE--ESEEYKTFEKVAESLRDDYGFGHTS---D---KEVAKKLKVKP--GSV-VLFKPFEEEPVEY 81 (97)
T ss_pred HhccCCeEEEEEECCC--CcHHHHHHHHHHHhcccCCeEEEEC---h---HHHHHHcCCCC--Cce-EEeCCcccCCccC
Confidence 4566778999999887 2368899999999999889998766 3 46777787754 777 4554322334557
Q ss_pred CCCCChHHHHHHHHH
Q 023747 113 ESDLTPSNIEEFCSR 127 (278)
Q Consensus 113 ~g~~~~~~i~~fi~~ 127 (278)
.|..+.++|.+|+..
T Consensus 82 ~g~~~~~~l~~fi~~ 96 (97)
T cd02981 82 DGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCHHHHHHHHHh
Confidence 998889999999875
No 248
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.57 E-value=0.00016 Score=50.04 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=48.7
Q ss_pred eecCCceEEEEEeCc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEec
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 103 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~~---~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~ 103 (278)
.+.+++++|.|+++| ++|+.+...+ .++.+.+..++.++.+|.+.. .......+ .++ |++ ++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~---~~~~~~~~-~~~-P~~-~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDE---DPNAQFDR-QGY-PTF-FFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTH---HHHHHHHH-CSS-SEE-EEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCC---ChhHHhCC-ccC-CEE-EEeC
Confidence 456789999999999 9999999887 566665667799999999877 33332222 567 999 7665
No 249
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.55 E-value=0.00075 Score=55.59 Aligned_cols=82 Identities=6% Similarity=0.138 Sum_probs=60.4
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCC---------CcccchhHHHHcCCCCCCceEEEEecCCc
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA---------DEDLAKPFLTLFGLEESKNTVVTAFDNKA 106 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~---------~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~ 106 (278)
...-+++||.++ +.|+...|.++.++++|.=.|..+.+|.. .+ ..+++++||..+ |++ ++.+...
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~---~g~~~~l~v~~~-Pal-~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPD---PGQAKRLGVKVT-PAL-FLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCC---HHHHHHcCCCcC-CEE-EEEECCC
Confidence 355688899888 99999999999999999644555555532 23 679999999998 999 6665544
Q ss_pred ceee-cCCCCCChHHHHH
Q 023747 107 ISKF-LLESDLTPSNIEE 123 (278)
Q Consensus 107 ~~~~-~~~g~~~~~~i~~ 123 (278)
...+ .-.|..+.++|.+
T Consensus 195 ~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELED 212 (215)
T ss_pred CeEEEEeeecCCHHHHHH
Confidence 3333 2357788877764
No 250
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.52 E-value=0.00085 Score=49.64 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=66.9
Q ss_pred ecCCceEEEEEeC----c-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEe---cCCc
Q 023747 35 QIDTLDMVYVFAK----A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF---DNKA 106 (278)
Q Consensus 35 ~~~~~~~v~F~~~----~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~---~~~~ 106 (278)
+..+..+|+++++ | ..|+..... .++.+-++..+.+...|.+..+. .+++..+++.++ |++ .++ ++..
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~~~~~-P~~-~~l~~~~~~~ 90 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPEG-YRVSQALRERTY-PFL-AMIMLKDNRM 90 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChHH-HHHHHHhCCCCC-CEE-EEEEecCCce
Confidence 5678899999998 6 677664411 34444455668888999886643 789999999999 999 665 3222
Q ss_pred ceeecCCCCCChHHHHHHHHHHhc
Q 023747 107 ISKFLLESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 107 ~~~~~~~g~~~~~~i~~fi~~~~~ 130 (278)
.....+.|..+++++...+....+
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 223456899999999999988653
No 251
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.51 E-value=0.00074 Score=49.96 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=65.2
Q ss_pred hcCCCcEEEEEECC----CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC---C-CCCCCcCCCeEEEEe-CCCcc
Q 023747 163 LNSHKDVLLEVYTP----WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---H-PKLQVEEYPTLLFYP-AGDKA 233 (278)
Q Consensus 163 ~~~~~~~~v~f~~~----~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~---~-~~~~i~~~Ptl~~f~-~g~~~ 233 (278)
+.+.|..+|++|++ ||..|+... .=.++.+-++. ++.+...|++..+ + ..+++.++|++.++. .++..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 45689999999999 888886653 11344444544 6899999988763 3 378999999999982 22222
Q ss_pred C-ceEecCCCCHHHHHHHHHHHhc
Q 023747 234 N-PIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 234 ~-~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
. .-+..|..+.++|+..|+..+.
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 1 1267899999999999877654
No 252
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0014 Score=55.62 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=87.1
Q ss_pred CCcccccccCCCCceeeeeeeecCCceEEEEEeCc-----cchHHHHHHHHHHHHHhcC--------ceEEEEEeCCCcc
Q 023747 14 PKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-----DDLKSLLEPLEDIARNFKG--------KIMFTAVDIADED 80 (278)
Q Consensus 14 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-----~~c~~~~~~~~~la~~~~~--------~v~f~~vd~~~~~ 80 (278)
.+...||+.+.+++..++.---.+...+++|.+.. .-|......|+-+|..+.. ++-|+.||.++.
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~- 115 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES- 115 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-
Confidence 34444999999999999996666677788888755 2567888999999998752 589999999999
Q ss_pred cchhHHHHcCCCCCCceEEEEecCCccee------ecCCCCCChHHHHHHHHHHhcCcc
Q 023747 81 LAKPFLTLFGLEESKNTVVTAFDNKAISK------FLLESDLTPSNIEEFCSRLLHGTL 133 (278)
Q Consensus 81 ~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~------~~~~g~~~~~~i~~fi~~~~~~~~ 133 (278)
++.-+.++++.. |++ .+|.+..+.. +..+-....+++.+|+++...-+.
T Consensus 116 --p~~Fq~l~ln~~-P~l-~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 116 --PQVFQQLNLNNV-PHL-VLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred --HHHHHHhcccCC-CeE-EEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 999999999999 999 7774332221 111223559999999999764433
No 253
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.47 E-value=0.0009 Score=48.28 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=55.3
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCC-CcccchhHHHHcC--CCCCCceEEEEecC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA-DEDLAKPFLTLFG--LEESKNTVVTAFDN 104 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~-~~~~~~~l~~~~~--i~~~~Ptl~~~~~~ 104 (278)
..++++.||++| ++|+.+.|.+.++++.+.+.+.+..+|.. .. +.+...++ +..+ |+++.+.++
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~-p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN---PDLAAEFGVAVRSI-PTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC---hHHHHHHhhhhccC-CeEEEEeCc
Confidence 667888889999 99999999999999999977999999997 56 78999999 8898 999434443
No 254
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.46 E-value=0.00077 Score=42.82 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=47.6
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHH---HcCCCCCCceEEEEecCC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT---LFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~---~~~i~~~~Ptl~~~~~~~ 105 (278)
++.|+.+| ++|.++.+.+.++ ......+.+..+|++.. ....+ .+++... |++ .+++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-P~~-~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDED---PALEKELKRYGVGGV-PTL-VVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCC---hHHhhHHHhCCCccc-cEE-EEEeCC
Confidence 46788888 9999999999999 45555699999999988 55544 7888898 999 666654
No 255
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.45 E-value=0.0018 Score=50.39 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=36.1
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 77 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~ 77 (278)
+++++|.|+++| ++|....|.+.+++++|++ .+.+..|+|+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~ 64 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCN 64 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEecc
Confidence 456889999999 9999999999999999985 4899999873
No 256
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0013 Score=47.87 Aligned_cols=72 Identities=18% Similarity=0.397 Sum_probs=53.2
Q ss_pred cchHHHhhc--CCCcEEEEEEC--------CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--------CC-CC
Q 023747 156 KTFDDLVLN--SHKDVLLEVYT--------PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------HP-KL 216 (278)
Q Consensus 156 ~~~~~~i~~--~~~~~~v~f~~--------~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--------~~-~~ 216 (278)
++|.+.+.+ +++.++|+|++ +||+.|....|.+.+.-+.... ++.|+.+++.+-. +. ..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 455555533 34558999985 6999999999999999886666 7999999987542 11 22
Q ss_pred CC-cCCCeEEEEeC
Q 023747 217 QV-EEYPTLLFYPA 229 (278)
Q Consensus 217 ~i-~~~Ptl~~f~~ 229 (278)
++ +.+||++=+.+
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 44 88999999975
No 257
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.41 E-value=0.0015 Score=51.93 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=61.5
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-C---C--------------------------C
Q 023747 166 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---H--------------------------P 214 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~---~--------------------------~ 214 (278)
++.++|.|| +.||++|....+.+.+++..|... ++.+..|..+.. . . .
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 588999999 899999999999999999999754 466666665542 0 1 0
Q ss_pred CCCCc------CCCeEEEEeCCCccCceEecC----CCCHHHHHHHHHHHhcc
Q 023747 215 KLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 215 ~~~i~------~~Ptl~~f~~g~~~~~~~~~g----~~~~~~l~~~i~~~~~~ 257 (278)
.|++. ..|+.+++...+.+ ...+.+ ..+.+.+.+.|+.....
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I-~~~~~~~~~~~~~~~~il~~l~~~~~~ 159 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGII-RHITVNDLPVGRSVDETLRVLDALQFV 159 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHhhhh
Confidence 12343 46788888655544 223322 35678899998766443
No 258
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.41 E-value=0.0018 Score=44.04 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=52.5
Q ss_pred EEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCC-CCChHHH
Q 023747 44 VFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLES-DLTPSNI 121 (278)
Q Consensus 44 F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g-~~~~~~i 121 (278)
++.++ +.|..+...+++++..+ + +.+-.+|..+. +.+ .+|||.+. |++ +.++. .+ +.| ..+.+++
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~---~~~-~~ygv~~v-Pal--vIng~--~~--~~G~~p~~~el 71 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDF---EEI-EKYGVMSV-PAL--VINGK--VV--FVGRVPSKEEL 71 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTH---HHH-HHTT-SSS-SEE--EETTE--EE--EESS--HHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCH---HHH-HHcCCCCC-CEE--EECCE--EE--EEecCCCHHHH
Confidence 36666 99999999999999999 4 77777887655 666 99999999 999 44543 23 367 6888888
Q ss_pred HHHHH
Q 023747 122 EEFCS 126 (278)
Q Consensus 122 ~~fi~ 126 (278)
.+|++
T Consensus 72 ~~~l~ 76 (76)
T PF13192_consen 72 KELLE 76 (76)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88874
No 259
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.34 E-value=0.0019 Score=54.35 Aligned_cols=91 Identities=9% Similarity=0.063 Sum_probs=67.2
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc------chhHHHHcCCCCCCceEEEEecCCcceee
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL------AKPFLTLFGLEESKNTVVTAFDNKAISKF 110 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~------~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~ 110 (278)
.--+++||.+. +.|.++.|.+..++++|.=.|..+.+|...... ...+++++||..+ |++ ++.+.+....+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-Pal-~Lv~~~t~~~~ 228 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF-PAL-YLVNPKSQKMS 228 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC-ceE-EEEECCCCcEE
Confidence 35688888887 999999999999999998666667766652200 1458999999998 999 66665544333
Q ss_pred cC-CCCCChHHHHHHHHHHhc
Q 023747 111 LL-ESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 111 ~~-~g~~~~~~i~~fi~~~~~ 130 (278)
.. .|.++.++|.+=+..++.
T Consensus 229 pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 229 PLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEeeccCCHHHHHHHHHHHHh
Confidence 32 577999998877766553
No 260
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.33 E-value=0.00035 Score=55.21 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=59.7
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceee
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKF 110 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~ 110 (278)
....-+++.||-+. ..|+-+..+++.+|+.+-+ ..|++||+... |=|+.+++|+.. |++ ++|.++....|
T Consensus 82 ~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~---PFlv~kL~IkVL-P~v-~l~k~g~~~D~ 152 (211)
T KOG1672|consen 82 KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKA---PFLVTKLNIKVL-PTV-ALFKNGKTVDY 152 (211)
T ss_pred hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccC---ceeeeeeeeeEe-eeE-EEEEcCEEEEE
Confidence 34456899999999 9999999999999999988 99999999999 889999999999 999 55554443333
No 261
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.32 E-value=0.0017 Score=47.63 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=67.2
Q ss_pred ccccCCCCceeeeeeeecCCceEEEEEeCccchHHHHHHHHHHH-HHhc--CceEEEEEeCCCccc--chhHHHHcCCC-
Q 023747 19 LISNLPTTSLELLKVSQIDTLDMVYVFAKADDLKSLLEPLEDIA-RNFK--GKIMFTAVDIADEDL--AKPFLTLFGLE- 92 (278)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~~~c~~~~~~~~~la-~~~~--~~v~f~~vd~~~~~~--~~~l~~~~~i~- 92 (278)
.|.+++.+|..++.. -+.++|.|=..-+.- .-...|.++| +... ..+.++.|-..++++ +.+|+++|+|.
T Consensus 6 ~v~LD~~tFdKvi~k---f~~~LVKFD~ayPyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 6 CVPLDELTFDKVIPK---FKYVLVKFDVAYPYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp SEEESTTHHHHHGGG---SSEEEEEEEESS--C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred eeeccceehhheecc---CceEEEEEeccCCCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 467777777655544 466888887644221 2345677777 3332 358888887765433 47999999996
Q ss_pred -CCCceEEEEecCCcceeecC--CCCCChHHHHHHHHHH
Q 023747 93 -ESKNTVVTAFDNKAISKFLL--ESDLTPSNIEEFCSRL 128 (278)
Q Consensus 93 -~~~Ptl~~~~~~~~~~~~~~--~g~~~~~~i~~fi~~~ 128 (278)
.+ |.+ .+|.++......| .|+.+.+.|..|+.+.
T Consensus 82 e~f-Pv~-~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 82 EDF-PVI-YLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp CC--SEE-EEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred ccC-CEE-EEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 56 999 5665555555555 8899999999999884
No 262
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.27 E-value=0.002 Score=51.52 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEE------EEEeCCCcc--------------------------cch
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMF------TAVDIADED--------------------------LAK 83 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f------~~vd~~~~~--------------------------~~~ 83 (278)
+++++|.|+++| ++|+.-.|.+.+++.+ + +.+ ..||.++.. ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~-~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--K-FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--C-CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 588999999999 9999999999999764 1 333 334433210 013
Q ss_pred hHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 84 PFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 84 ~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
.+...||+.+. |+-+.+++..+...+...|..+.+++.+++
T Consensus 136 ~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 136 AVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred hHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 56778999998 666468887777788889999988887744
No 263
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.27 E-value=0.00087 Score=51.58 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=51.2
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc---eEEEEEeCCCccc----------------------chhHHHHcC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK---IMFTAVDIADEDL----------------------AKPFLTLFG 90 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~---v~f~~vd~~~~~~----------------------~~~l~~~~~ 90 (278)
++++.++|-+.| ++|+.+.|.+.+++...+.. +-++.|+.+.... .++++++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 378888888999 99999999999999988765 5555555543322 567888999
Q ss_pred CCCCCceEEEEecCC
Q 023747 91 LEESKNTVVTAFDNK 105 (278)
Q Consensus 91 i~~~~Ptl~~~~~~~ 105 (278)
|.+. |+++.+...|
T Consensus 113 v~~i-P~l~i~~~dG 126 (157)
T KOG2501|consen 113 VKGI-PALVILKPDG 126 (157)
T ss_pred cCcC-ceeEEecCCC
Confidence 9999 9994444433
No 264
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.27 E-value=0.00087 Score=46.76 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=51.9
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-----CC-CCC--CcCCCeEEEEeCCCccCceEecC
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----HP-KLQ--VEEYPTLLFYPAGDKANPIKVSA 240 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-----~~-~~~--i~~~Ptl~~f~~g~~~~~~~~~g 240 (278)
++++|+.+||++|..+...+.++..... .+.+..+|++... +. ..+ ..++|.+++ +|+.+ |
T Consensus 1 ~V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------g 69 (86)
T TIGR02183 1 FVVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------G 69 (86)
T ss_pred CEEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------c
Confidence 3678999999999999888888765543 3667777776432 21 223 478999954 55432 2
Q ss_pred CCCHHHHHHHHHHHhcc
Q 023747 241 RSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 241 ~~~~~~l~~~i~~~~~~ 257 (278)
..++|.++++++.+.
T Consensus 70 --G~~dl~~~~~~~~~~ 84 (86)
T TIGR02183 70 --GCTDFEQLVKENFDI 84 (86)
T ss_pred --CHHHHHHHHHhcccc
Confidence 347899998887654
No 265
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.26 E-value=0.0026 Score=53.24 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=68.3
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc------chhHHHHcCCCCCCceEEEEecCCcceee
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL------AKPFLTLFGLEESKNTVVTAFDNKAISKF 110 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~------~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~ 110 (278)
.--+++||.+. +.|.+++|.+..++++|.=.|..+.+|...... ....++++||..+ |++ ++.+.+....+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~-PAl-~Lv~~~t~~~~ 221 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF-PAL-MLVDPKSGSVR 221 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc-ceE-EEEECCCCcEE
Confidence 35688899887 999999999999999998767777777643210 1347789999998 999 77776654433
Q ss_pred cC-CCCCChHHHHHHHHHHhcC
Q 023747 111 LL-ESDLTPSNIEEFCSRLLHG 131 (278)
Q Consensus 111 ~~-~g~~~~~~i~~fi~~~~~~ 131 (278)
.. .|.++.++|.+=+..+..+
T Consensus 222 pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEeeccCCHHHHHHHHHHHHhc
Confidence 32 5778999998777766543
No 266
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.26 E-value=0.00082 Score=51.30 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCCcEEEEEECCCChh-HHHHHHHHHHHHHHhcCCC--ceEEEEEeCCC
Q 023747 165 SHKDVLLEVYTPWCVT-CETTSKQIEKLAKHFKGLD--NLVIAKIDASA 210 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~a~~~~~~~--~~~~~~vd~~~ 210 (278)
.+++++|.||++||++ |....+.+.++...+...+ ++.+..|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4689999999999997 9999999999999997642 48888887764
No 267
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.23 E-value=0.0018 Score=48.11 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=52.3
Q ss_pred cCCceEEEEEeC-c-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCccc------------------chhHHHHcCCC--
Q 023747 36 IDTLDMVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDL------------------AKPFLTLFGLE-- 92 (278)
Q Consensus 36 ~~~~~~v~F~~~-~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~------------------~~~l~~~~~i~-- 92 (278)
.+++++|.||.. | +.|....+.+.++..+|+. .+.+..|..+..+. ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 557899999998 8 9999999999999999985 38888888876543 23556666666
Q ss_pred ----CCCceEEEEecCCcc
Q 023747 93 ----ESKNTVVTAFDNKAI 107 (278)
Q Consensus 93 ----~~~Ptl~~~~~~~~~ 107 (278)
.. |++ .+++.++.
T Consensus 104 ~~~~~~-p~~-~lid~~g~ 120 (124)
T PF00578_consen 104 KDTLAL-PAV-FLIDPDGK 120 (124)
T ss_dssp TTSEES-EEE-EEEETTSB
T ss_pred cCCceE-eEE-EEECCCCE
Confidence 55 666 55554443
No 268
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.23 E-value=0.0016 Score=60.15 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=71.3
Q ss_pred eeeeecCC--ceEEEEEeCc-cchHHHHHHHH---HHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEec
Q 023747 31 LKVSQIDT--LDMVYVFAKA-DDLKSLLEPLE---DIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFD 103 (278)
Q Consensus 31 ~~~~~~~~--~~~v~F~~~~-~~c~~~~~~~~---~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~ 103 (278)
.......+ ++++.||++| -.||..++..- ++..+..+ +...++|.++++. ..++.++||+-+. |++ .+|+
T Consensus 466 ~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~-P~~-~ff~ 542 (569)
T COG4232 466 DQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV-PTY-LFFG 542 (569)
T ss_pred HHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC-CEE-EEEC
Confidence 33344444 9999999999 89998776543 33444445 8999999996654 4578889999999 999 7887
Q ss_pred CCcceeecCCCCCChHHHHHHHHHH
Q 023747 104 NKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 104 ~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
.+....-...|.++.+.+.+++++.
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHh
Confidence 5544444478889999999998874
No 269
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.20 E-value=0.0051 Score=48.96 Aligned_cols=104 Identities=20% Similarity=0.316 Sum_probs=78.9
Q ss_pred CCCCeEEEcccchHHHhhcC--CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCe
Q 023747 146 TNANVQIVVGKTFDDLVLNS--HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPT 223 (278)
Q Consensus 146 ~~~~v~~l~~~~~~~~i~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Pt 223 (278)
..+.|..|++.+|...+-.. +-.++|+.|...-+.|..+...++.+|.+|.. ++|+++=... -++.|.-..+||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~-cIpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATT-CIPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEeccccc-ccCCCcccCCCe
Confidence 45679999999998888554 34678899999999999999999999999985 7888876432 456777788999
Q ss_pred EEEEeCCCccC----ceEecCC-CCHHHHHHHHHH
Q 023747 224 LLFYPAGDKAN----PIKVSAR-SSSKNIAAFIKE 253 (278)
Q Consensus 224 l~~f~~g~~~~----~~~~~g~-~~~~~l~~~i~~ 253 (278)
+++|..|.-.+ +..+-|. .+.+++..++-+
T Consensus 165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 99998885432 2234443 566777766644
No 270
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00024 Score=57.53 Aligned_cols=74 Identities=26% Similarity=0.457 Sum_probs=63.3
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-CCCCcCCCeEEEEeCCCccCceEecCC
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-KLQVEEYPTLLFYPAGDKANPIKVSAR 241 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~-~~~i~~~Ptl~~f~~g~~~~~~~~~g~ 241 (278)
...+..++.||++||.+|+.+...+..+++.++ ++.|++++.+.. ++. .+.+...|.++++..|..+. +..|.
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~--~l~~~ 89 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD--RLSGA 89 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh--hhhcc
Confidence 367788999999999999999999999999994 699999999888 674 77999999999998888775 44444
Q ss_pred C
Q 023747 242 S 242 (278)
Q Consensus 242 ~ 242 (278)
.
T Consensus 90 ~ 90 (227)
T KOG0911|consen 90 D 90 (227)
T ss_pred C
Confidence 3
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.17 E-value=0.0015 Score=50.83 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCCcEEEEEECC-CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 165 SHKDVLLEVYTP-WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 165 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
.+++++|.||+. ||+.|....+.+.++...++.. ++.+..|+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 367899999975 6888999889999999998754 57777777643
No 272
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.14 E-value=0.0037 Score=41.49 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=49.7
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEecCCcceeecCCCCCCh
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTP 118 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~ 118 (278)
+..|+++| ++|+.+.+.+.+. + +.+..+|.+.... ...+++.+|+.+. |++ .+. + .. +.| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~~v-P~~-~~~--~--~~--~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----G-IAFEEIDVEKDSAAREEVLKVLGQRGV-PVI-VIG--H--KI--IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----C-CeEEEEeccCCHHHHHHHHHHhCCCcc-cEE-EEC--C--EE--Eee-CCH
Confidence 46788899 9999999888762 3 7888889886621 1236677999999 999 543 2 12 244 577
Q ss_pred HHHHHHH
Q 023747 119 SNIEEFC 125 (278)
Q Consensus 119 ~~i~~fi 125 (278)
+.|.+++
T Consensus 67 ~~i~~~i 73 (74)
T TIGR02196 67 EKLDQLL 73 (74)
T ss_pred HHHHHHh
Confidence 8888776
No 273
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.14 E-value=0.0023 Score=45.14 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=68.7
Q ss_pred cccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC---CC-CCCCc----CCC-eE
Q 023747 154 VGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---HP-KLQVE----EYP-TL 224 (278)
Q Consensus 154 ~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~---~~-~~~i~----~~P-tl 224 (278)
+..+|.+++ ...+.++|.|..+--..- .....+.++|...++ .-.++.|||...+ ++ ++.+. .-| .+
T Consensus 8 d~KdfKKLL-RTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 8 DHKDFKKLL-RTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred chHHHHHHH-hhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 347888876 445667777766543333 335588999999999 5788999999753 34 66666 344 36
Q ss_pred EEEeCCCccCceEecCCCCHHHHHHHHHH
Q 023747 225 LFYPAGDKANPIKVSARSSSKNIAAFIKE 253 (278)
Q Consensus 225 ~~f~~g~~~~~~~~~g~~~~~~l~~~i~~ 253 (278)
..|++|...+ .|+...+..++++|+++
T Consensus 84 kHYKdG~fHk--dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDGDFHT--EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccCCCccc--cccchhhHHHHHHHhhC
Confidence 6789998765 89999999999999975
No 274
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.10 E-value=0.0019 Score=49.60 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=35.8
Q ss_pred CCcEEEEE-ECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 166 HKDVLLEV-YTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 166 ~~~~~v~f-~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
++.++|.| ++.||++|....+.+.++...+... ++.++.|+.+..
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~ 68 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESP 68 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCH
Confidence 35555555 5999999999999999999999643 588888887765
No 275
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.10 E-value=0.0014 Score=43.57 Aligned_cols=65 Identities=15% Similarity=0.360 Sum_probs=42.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCC----CCcCCCeEEEEeCCCccCceEecCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLLFYPAGDKANPIKVSARSS 243 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~----~i~~~Ptl~~f~~g~~~~~~~~~g~~~ 243 (278)
+++|+++||++|..+...+.+. ++.+..+|++.+ .. .++ +...+|++++ +|. ... ..+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~-----~i~-g~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE-----HLS-GFR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE-----EEe-cCC
Confidence 5789999999999987777652 356667777655 22 223 5788999976 332 223 355
Q ss_pred HHHHHHH
Q 023747 244 SKNIAAF 250 (278)
Q Consensus 244 ~~~l~~~ 250 (278)
...|.++
T Consensus 66 ~~~l~~~ 72 (73)
T cd02976 66 PDKLRAL 72 (73)
T ss_pred HHHHHhh
Confidence 5566655
No 276
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.09 E-value=0.0019 Score=51.90 Aligned_cols=104 Identities=21% Similarity=0.365 Sum_probs=82.6
Q ss_pred CCeEEE-cccchHHHhhcCCC--cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCe
Q 023747 148 ANVQIV-VGKTFDDLVLNSHK--DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPT 223 (278)
Q Consensus 148 ~~v~~l-~~~~~~~~i~~~~~--~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Pt 223 (278)
+.|..+ +++.|.+.|...-+ .++|+.|.+.-+.|..+...+.-+|..+. .++|+++-.+.-.. .+|..+.+|+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccchhhhcccCCce
Confidence 357666 55999999966523 56889999999999999999999999997 59999999776654 6899999999
Q ss_pred EEEEeCCCccCce-E----ecCCCCHHHHHHHHHHH
Q 023747 224 LLFYPAGDKANPI-K----VSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 224 l~~f~~g~~~~~~-~----~~g~~~~~~l~~~i~~~ 254 (278)
+++|++|+-+.-+ . +-.++-..++..|++++
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 9999999866421 1 22357778899999875
No 277
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.0045 Score=45.42 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=62.9
Q ss_pred ccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCC
Q 023747 155 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 155 ~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~ 231 (278)
....+..+... .+.+++-|...|-+.|..+-..+.+++..+.+ -..++-+|+++- ++ .-|++...|++++|-+++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 35556666544 67889999999999999999999999999987 577888888866 55 467999999999998777
Q ss_pred cc
Q 023747 232 KA 233 (278)
Q Consensus 232 ~~ 233 (278)
.+
T Consensus 89 Hm 90 (142)
T KOG3414|consen 89 HM 90 (142)
T ss_pred eE
Confidence 65
No 278
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.02 E-value=0.0048 Score=47.89 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=34.8
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIA 77 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~ 77 (278)
++++++.||++| + |..-.|.+++++++|++ .+.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 578999999999 6 99999999999999975 3888888764
No 279
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.00 E-value=0.0014 Score=51.06 Aligned_cols=78 Identities=17% Similarity=0.379 Sum_probs=49.2
Q ss_pred EEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHH-HH--HHHHHhcCCCceEEEEEeCCCC-CCC-CC--------C
Q 023747 151 QIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-IE--KLAKHFKGLDNLVIAKIDASAN-EHP-KL--------Q 217 (278)
Q Consensus 151 ~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~-~~--~~a~~~~~~~~~~~~~vd~~~~-~~~-~~--------~ 217 (278)
...+.+.|... ...+|+++|.++.+||..|+.|... |. ++|..+.. +++-+++|.++. ++. .| +
T Consensus 23 ~~w~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 23 QPWGEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp B-SSHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcC
Confidence 34444556553 5679999999999999999988753 32 67777766 689999998887 664 34 5
Q ss_pred CcCCCeEEEEe-CCC
Q 023747 218 VEEYPTLLFYP-AGD 231 (278)
Q Consensus 218 i~~~Ptl~~f~-~g~ 231 (278)
..++|+.++.. +|+
T Consensus 100 ~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ---SSEEEEE-TTS-
T ss_pred CCCCCceEEECCCCC
Confidence 67899999884 444
No 280
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.98 E-value=0.0032 Score=47.38 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=43.8
Q ss_pred eecCCceEEEEEeCc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~~---~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
-+.+++++|.|++.| ++|+.+.... .++.+.....+..+.++.+..+ ..+. ..| .++ ||+ .+++..+.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td--~~~~-~~g-~~v-Pti-vFld~~g~ 91 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD--KNLS-PDG-QYV-PRI-MFVDPSLT 91 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC--CCcC-ccC-ccc-CeE-EEECCCCC
Confidence 356789999999999 9999988764 3455555445666666654221 1111 133 466 999 77765543
No 281
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.91 E-value=0.0094 Score=47.84 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=33.0
Q ss_pred ceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCC
Q 023747 39 LDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIA 77 (278)
Q Consensus 39 ~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~ 77 (278)
++++.++++| ++|....|.+++++++|+++ +.+..|+|+
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 3455668999 99999999999999999864 889898874
No 282
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.87 E-value=0.0021 Score=51.52 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=36.9
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
+++++|.|||+||+.|.+ .+.++++.++|++. .+.+..+.|+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeecc
Confidence 689999999999999976 77999999999764 5889888885
No 283
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.87 E-value=0.013 Score=46.44 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=62.2
Q ss_pred CCceEEEEE-eCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc-------------------------cchhHHHH
Q 023747 37 DTLDMVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLTL 88 (278)
Q Consensus 37 ~~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~ 88 (278)
++.++|.|| ..| +.|....+.+.+++++|.. .+.+..|.++... ....+.+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 467888888 688 9999999999999999974 3666666554320 12456778
Q ss_pred cCCC------CCCceEEEEecCCcceeecCCC----CCChHHHHHHHHHH
Q 023747 89 FGLE------ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRL 128 (278)
Q Consensus 89 ~~i~------~~~Ptl~~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~ 128 (278)
||+. .. |+. ++++..+...+.+.+ ..+.+++.+.++..
T Consensus 109 ~gv~~~~~~~~~-p~~-~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVAL-RGT-FIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCcee-eEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8876 34 788 777766555555522 34667788887664
No 284
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.82 E-value=0.0029 Score=48.68 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=35.2
Q ss_pred CcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 167 KDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 167 ~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
+.++|.|| ++||+.|....+.+.++...+... ++.+..|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence 77777777 899999999999999999999753 57777776654
No 285
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.82 E-value=0.0049 Score=51.46 Aligned_cols=82 Identities=17% Similarity=0.308 Sum_probs=54.2
Q ss_pred cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC-----------------------------------
Q 023747 164 NSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA----------------------------------- 208 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~----------------------------------- 208 (278)
.+++..++.|+.+.|++|+.+.+.+.++... +. .+.+..+..
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v-~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GI-TVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--Ce-EEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 3467789999999999999999888776431 00 121111111
Q ss_pred ---CC----C-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHH
Q 023747 209 ---SA----N-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 209 ---~~----~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
+. + .+ .+++|+++|+++ |.+|. ...|..+.+.|.++|.+.
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~-----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGT-----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCe-----EeeCCCCHHHHHHHHHHc
Confidence 00 0 01 133789999999 66765 357889999999999864
No 286
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.78 E-value=0.015 Score=45.90 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=41.3
Q ss_pred CCceEEEEEeCc--cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCC
Q 023747 37 DTLDMVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLE 92 (278)
Q Consensus 37 ~~~~~v~F~~~~--~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~ 92 (278)
++++++.||..| ++|....|.+.++++++. .+.++.|.++......++++++++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCC
Confidence 467899999998 689999999999999996 4888888776532224455555554
No 287
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.71 E-value=0.0038 Score=47.76 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCcEEEEEECCC-ChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 166 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 166 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
++.+++.||+.| |++|....+.+.++...++ ++.+..|+.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 678999999988 6999999999999999985 4777777775
No 288
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.67 E-value=0.0043 Score=42.72 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=54.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNI 247 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l 247 (278)
+++|+.+.|+-|..+...+..++... .+.+-.+|++.+ ++ .+|+. .+|.+.+=..+.........+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 67899999999999888887765444 488999999987 44 58874 7898775221111112356778999999
Q ss_pred HHHHH
Q 023747 248 AAFIK 252 (278)
Q Consensus 248 ~~~i~ 252 (278)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99984
No 289
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.66 E-value=0.0035 Score=50.51 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 166 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
+++++|.|| +.||+.|....+.+.++...|... ++.+..|.++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D 74 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTD 74 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence 678999999 999999999999999999999754 4555555544
No 290
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.66 E-value=0.0044 Score=49.00 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCcEEEEEECCC-ChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 166 HKDVLLEVYTPW-CVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 166 ~~~~~v~f~~~~-c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
+++++|.||+.| |++|....+.+.+++.++. ++.+..|+.+.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 678999999999 9999999999999999984 46777776654
No 291
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.64 E-value=0.012 Score=44.58 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=33.4
Q ss_pred CCceEEEEEe-Cc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc
Q 023747 37 DTLDMVYVFA-KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE 79 (278)
Q Consensus 37 ~~~~~v~F~~-~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~ 79 (278)
++++++.||. .| +.|....+.+.+++.++.+ .+.++.|..+..
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 5678888885 67 7899999999999999864 377777665543
No 292
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.62 E-value=0.0067 Score=41.47 Aligned_cols=56 Identities=11% Similarity=0.268 Sum_probs=39.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----CCCCcCCCeEEEEeCCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----KLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~----~~~i~~~Ptl~~f~~g~ 231 (278)
++.-+++|+.+||++|......+.+. ++.+-.+|++.+ +.. ..+...+|.+++ +|+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence 44567889999999999988777642 355666777665 221 236788999964 554
No 293
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.037 Score=40.75 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=73.8
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC-
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL- 112 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~- 112 (278)
...+.+++-|=..| +.|-++...+..+|....+-..+.-+|.++- +.+.+-|++... |+++.+|+++ ..+..+
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV---~~~~~~~~l~~p-~tvmfFfn~k-HmkiD~g 95 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV---PDFVKMYELYDP-PTVMFFFNNK-HMKIDLG 95 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh---hhhhhhhcccCC-ceEEEEEcCc-eEEEeeC
Confidence 34567788888899 9999999999999999998888888899988 999999999998 9996777654 233333
Q ss_pred CC-------C-CChHHHHHHHHHHhcCcc
Q 023747 113 ES-------D-LTPSNIEEFCSRLLHGTL 133 (278)
Q Consensus 113 ~g-------~-~~~~~i~~fi~~~~~~~~ 133 (278)
.| . .+.+++++.++-+..|..
T Consensus 96 tgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 96 TGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 11 1 467888888888766543
No 294
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.59 E-value=0.031 Score=52.90 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=74.2
Q ss_pred hHHHhhcCCCc-EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEe-CCCcc
Q 023747 158 FDDLVLNSHKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYP-AGDKA 233 (278)
Q Consensus 158 ~~~~i~~~~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~-~g~~~ 233 (278)
+.+.+..-.++ .++.|+.+.|..|..+...+++++. +.. ++.+...|...+ +. .+|++...|++.++. +|+..
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~--~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~ 433 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE--KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYT 433 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC--cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCccc
Confidence 55555443555 5778888899999999999999984 433 688888887666 44 589999999999996 44433
Q ss_pred CceEecCCCCHHHHHHHHHHHhccc
Q 023747 234 NPIKVSARSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 234 ~~~~~~g~~~~~~l~~~i~~~~~~~ 258 (278)
.++|.|-..-.+|..||...+...
T Consensus 434 -~i~f~g~P~G~Ef~s~i~~i~~~~ 457 (555)
T TIGR03143 434 -GLKFHGVPSGHELNSFILALYNAA 457 (555)
T ss_pred -ceEEEecCccHhHHHHHHHHHHhc
Confidence 579999999999999998877655
No 295
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.59 E-value=0.0049 Score=46.80 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 165 SHKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 165 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
.+++++|.|| +.||+.|....+.+.++...++.. ++.+..|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 4788999999 789999999999999999999543 57777777654
No 296
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.55 E-value=0.0075 Score=41.35 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=40.5
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc--chhHHHHcCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--AKPFLTLFGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~--~~~l~~~~~i~~~~Ptl 98 (278)
++.|+.+| ++|+++.+.+.++. ..+.+.+..+|.+.... ...+.+..|+.+. |++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v-P~v 58 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV-PNI 58 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence 46889999 99999999999987 44446677777654410 1136677798898 999
No 297
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.052 Score=41.68 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=67.1
Q ss_pred eeecCCceEEEEEeCc-cchHHHHHHH---HHHHHHhcCceEEEEEeCCCccc-------------chhHHHHcCCCCCC
Q 023747 33 VSQIDTLDMVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIADEDL-------------AKPFLTLFGLEESK 95 (278)
Q Consensus 33 ~~~~~~~~~v~F~~~~-~~c~~~~~~~---~~la~~~~~~v~f~~vd~~~~~~-------------~~~l~~~~~i~~~~ 95 (278)
....++-.+++|-++. ..|.++.... .++.+-+.+.+.+..++....+- ..+|++.|++++.
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst- 116 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST- 116 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC-
Confidence 3344555677777777 8998876544 34445556667777766654322 2589999999999
Q ss_pred ceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcC
Q 023747 96 NTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHG 131 (278)
Q Consensus 96 Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~ 131 (278)
||+ .++++.+...+.+-|-+.++++..-+.-+..|
T Consensus 117 Ptf-vFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 117 PTF-VFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred ceE-EEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999 88887766677778888888877666554443
No 298
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.52 E-value=0.0094 Score=45.55 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=45.5
Q ss_pred CCceEEEEEeCc--cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 37 DTLDMVYVFAKA--DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 37 ~~~~~v~F~~~~--~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
++++++.||..| ++|....+.+.++++++++ +.|+.|+.+.......+.+++++..+ |.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~-~~l 87 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEGVDNV-TTL 87 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcCCCCc-eEe
Confidence 467999999988 6899999999999999975 88989988754222455666666555 543
No 299
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.50 E-value=0.0045 Score=39.80 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=36.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----CCC-CCcCCCeEEE
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PKL-QVEEYPTLLF 226 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~----~~~-~i~~~Ptl~~ 226 (278)
+++|+.+||++|......+++. ++.+-.+|++.. +. .+. +..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999987777332 477788887776 33 222 8899999986
No 300
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.49 E-value=0.012 Score=48.15 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=60.1
Q ss_pred CCcEEE-EEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--------------C--------------C-CC
Q 023747 166 HKDVLL-EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------E--------------H-PK 215 (278)
Q Consensus 166 ~~~~~v-~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--------------~--------------~-~~ 215 (278)
++.++| .|++.||+.|....+.+.++..+|+.. ++.+..|+++.. . + ..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 555554 578999999999999999999999754 466666665531 0 0 02
Q ss_pred CCCc------CCCeEEEEeCCCccCceE-e--cCCCCHHHHHHHHHHHhc
Q 023747 216 LQVE------EYPTLLFYPAGDKANPIK-V--SARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 216 ~~i~------~~Ptl~~f~~g~~~~~~~-~--~g~~~~~~l~~~i~~~~~ 256 (278)
|++. .+|+.+++..++.+..+. | .+.++.+++.+.|+...-
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 2442 479999996555552211 2 345899999999976543
No 301
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.47 E-value=0.016 Score=39.88 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=50.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC----CCCCCcCCCeEEEEeCCCccCceEecCCCCH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH----PKLQVEEYPTLLFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~----~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~ 244 (278)
+.+|+.+||++|......+.+ + ++.|-.+|++.+ +. ...+...+|.+++ ++. ....++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~---gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~------~~~Gf~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R---GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL------SWSGFRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C---CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE------EEecCCH
Confidence 668889999999998777744 2 477888888766 22 2336678999975 332 2337788
Q ss_pred HHHHHHHHHHhc
Q 023747 245 KNIAAFIKEQLK 256 (278)
Q Consensus 245 ~~l~~~i~~~~~ 256 (278)
+.|.+++..+..
T Consensus 67 ~~l~~~~~~~~~ 78 (81)
T PRK10329 67 DMINRLHPAPHA 78 (81)
T ss_pred HHHHHHHHhhhh
Confidence 889888877653
No 302
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.46 E-value=0.035 Score=44.72 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=60.4
Q ss_pred CCceEEEEE-eCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc----------------------cchhHHHHcCC
Q 023747 37 DTLDMVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED----------------------LAKPFLTLFGL 91 (278)
Q Consensus 37 ~~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~----------------------~~~~l~~~~~i 91 (278)
+++++|.|| ..| +.|....+.+.++..+|.+ .+.+..|.++... ....+++.||+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 457888888 788 9999999999999999864 3556555544210 02478888998
Q ss_pred C------CCCceEEEEecCCcceeecCC----CCCChHHHHHHHHHH
Q 023747 92 E------ESKNTVVTAFDNKAISKFLLE----SDLTPSNIEEFCSRL 128 (278)
Q Consensus 92 ~------~~~Ptl~~~~~~~~~~~~~~~----g~~~~~~i~~fi~~~ 128 (278)
. .. |+. .+++..+...+.+. ..+..+++.+.++..
T Consensus 111 ~~~~~g~~~-p~t-fiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 111 LIEEAGLAD-RGT-FVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred cccCCCcee-eEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 6 34 777 67765544444331 135777777777543
No 303
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.45 E-value=0.019 Score=38.52 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=45.0
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHH-----cCCCCCCceEEEEecCCcceeecCCC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL-----FGLEESKNTVVTAFDNKAISKFLLES 114 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~-----~~i~~~~Ptl~~~~~~~~~~~~~~~g 114 (278)
+..|+++| ++|+++.+.+.++. +.+..+|.+.. +..... +++.+. |++ . ++++. .. .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~---~~~~~~~~~~~~~~~~v-P~i-~-~~~g~--~l---~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEED---EGAADRVVSVNNGNMTV-PTV-K-FADGS--FL---T 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCC---HhHHHHHHHHhCCCcee-CEE-E-ECCCe--Ee---c
Confidence 56889999 99999999987763 44556887766 444444 378888 998 4 54442 11 2
Q ss_pred CCChHHHHHHH
Q 023747 115 DLTPSNIEEFC 125 (278)
Q Consensus 115 ~~~~~~i~~fi 125 (278)
..+..++.+.+
T Consensus 65 ~~~~~~~~~~l 75 (77)
T TIGR02200 65 NPSAAQVKAKL 75 (77)
T ss_pred CCCHHHHHHHh
Confidence 44555665544
No 304
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.45 E-value=0.021 Score=43.69 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=39.3
Q ss_pred CCceEEEEE-eCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCC
Q 023747 37 DTLDMVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGL 91 (278)
Q Consensus 37 ~~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i 91 (278)
+++++|.|| +.| +.|+...|.+.++++++.+ .+.++.|..+.......+++++++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 355666665 789 9999999999999999964 388888887766322224445444
No 305
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.39 E-value=0.0059 Score=41.75 Aligned_cols=54 Identities=13% Similarity=0.344 Sum_probs=37.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CC----C-CCCCcCCCeEEEEeCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH----P-KLQVEEYPTLLFYPAGD 231 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~----~-~~~i~~~Ptl~~f~~g~ 231 (278)
++.|+++||++|..+...+.++... +.+..++.+.. +. . ..+..++|.++ -+|+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence 5789999999999998888887552 45556665543 11 1 23778899974 3554
No 306
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.34 E-value=0.015 Score=38.88 Aligned_cols=64 Identities=11% Similarity=0.234 Sum_probs=43.1
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-CC----CCCCcCCCeEEEEeCCCccCceEecCCCCH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP----KLQVEEYPTLLFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-~~----~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~ 244 (278)
+++|..+||++|......+.+. ++.+-.+|++.+. .. ..+...+|.++ -+|+.+ | ..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i------g--g~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI------G--GS 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE------e--CH
Confidence 6789999999999987777642 4666777777653 21 23778899984 355422 2 35
Q ss_pred HHHHHHH
Q 023747 245 KNIAAFI 251 (278)
Q Consensus 245 ~~l~~~i 251 (278)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 6777765
No 307
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.33 E-value=0.024 Score=40.96 Aligned_cols=91 Identities=12% Similarity=0.197 Sum_probs=60.3
Q ss_pred ccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCC---
Q 023747 155 GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGD--- 231 (278)
Q Consensus 155 ~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~--- 231 (278)
.+++.+++ ...+.++|.|+...-+ .....|.++|..++. ++.|+..... .-...+++ .|++++|+...
T Consensus 8 ~~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~-~~~~~~~~--~~~ivl~~p~~~~~ 78 (104)
T cd03069 8 EAEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTSDK-QLLEKYGY--GEGVVLFRPPRLSN 78 (104)
T ss_pred HHHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEChH-HHHHhcCC--CCceEEEechhhhc
Confidence 35577766 4566677777665332 356788999999977 5777665532 12245666 68888884311
Q ss_pred --ccCceEecCCCCHHHHHHHHHHH
Q 023747 232 --KANPIKVSARSSSKNIAAFIKEQ 254 (278)
Q Consensus 232 --~~~~~~~~g~~~~~~l~~~i~~~ 254 (278)
..+.+.|.|..+.+.|.+||..+
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 12244699999999999999875
No 308
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.31 E-value=0.0072 Score=43.74 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=62.2
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECC--CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeE
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTP--WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTL 224 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~--~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl 224 (278)
....++.+++++++.. +...+++|..+ .++-+....-++=++.+.|.+ .+..+.++...+ .+ .+|++..+|++
T Consensus 10 g~~~vd~~~ld~~l~~-~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAA-PGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp TEEEE-CCCHHHHHHC-CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred CCeeechhhHHHHHhC-CCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCeE
Confidence 4778899999999844 55566655543 244555656677788888888 677777774433 55 58999999999
Q ss_pred EEEeCCCccCceEecCCCCH
Q 023747 225 LFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 225 ~~f~~g~~~~~~~~~g~~~~ 244 (278)
++|++|+..+ ...|..+.
T Consensus 87 vf~R~g~~lG--~i~gi~dW 104 (107)
T PF07449_consen 87 VFFRDGRYLG--AIEGIRDW 104 (107)
T ss_dssp EEEETTEEEE--EEESSSTH
T ss_pred EEEECCEEEE--EecCeecc
Confidence 9999997654 34444443
No 309
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.26 E-value=0.033 Score=38.52 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=53.8
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHHHcC--CCCCCceEEEEecCCcceeecCCCC
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFG--LEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~~~~l~~~~~--i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
.+..|..+| +.|+++...+++++.++++ +.+..+|.+... ....+....+ +... |+| . .++. .. |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~v-P~i-f-i~g~---~i---g- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETV-PQI-F-VDQK---HI---G- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcC-CEE-E-ECCE---EE---c-
Confidence 467788899 9999999999999988755 888888887641 0134555555 3677 999 3 4433 11 1
Q ss_pred CChHHHHHHHHHHh
Q 023747 116 LTPSNIEEFCSRLL 129 (278)
Q Consensus 116 ~~~~~i~~fi~~~~ 129 (278)
..+++.++++..+
T Consensus 71 -g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 -GCTDFEAYVKENL 83 (85)
T ss_pred -CHHHHHHHHHHhc
Confidence 3457777777654
No 310
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.25 E-value=0.016 Score=46.20 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=67.4
Q ss_pred cccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCc
Q 023747 18 TLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKN 96 (278)
Q Consensus 18 ~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~P 96 (278)
++.+++-......+...+..--++|..|... +.|.-+...++++|.+|.. ++|+++-.+..- ..|-=... |
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI------pNYPe~nl-P 163 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI------PNYPESNL-P 163 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc------CCCcccCC-C
Confidence 4555655555555555566555677788888 9999999999999999998 899888766551 11222234 9
Q ss_pred eEEEEecCCcceee----cCCCC-CChHHHHHHHHH
Q 023747 97 TVVTAFDNKAISKF----LLESD-LTPSNIEEFCSR 127 (278)
Q Consensus 97 tl~~~~~~~~~~~~----~~~g~-~~~~~i~~fi~~ 127 (278)
||+.|+.|.-..-+ .+.|. .+.+++..++-+
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 99444444321111 23443 678888888776
No 311
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.23 E-value=0.049 Score=40.61 Aligned_cols=76 Identities=18% Similarity=0.328 Sum_probs=58.0
Q ss_pred ccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCe-EEEEeCC
Q 023747 155 GKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPT-LLFYPAG 230 (278)
Q Consensus 155 ~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Pt-l~~f~~g 230 (278)
....++.|.+. ++.+++-|..+|-+.|..+-..+.+++.+.++ -..++.+|+++- ++ ..|.+. -|. +++|-++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 45667777554 78889999999999999999999999999987 588999999876 65 356777 666 6666566
Q ss_pred Ccc
Q 023747 231 DKA 233 (278)
Q Consensus 231 ~~~ 233 (278)
+.+
T Consensus 85 khm 87 (133)
T PF02966_consen 85 KHM 87 (133)
T ss_dssp EEE
T ss_pred eEE
Confidence 654
No 312
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.18 E-value=0.029 Score=40.49 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=57.9
Q ss_pred eecCCceEEEEEeCccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEec-----CCcce
Q 023747 34 SQIDTLDMVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD-----NKAIS 108 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~-----~~~~~ 108 (278)
.....+.+|.|+..... .....|.++|..+++...|+... . ..+...+++ . |+++.+.+ .-...
T Consensus 15 ~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~---~---~~~~~~~~~--~-~~ivl~~p~~~~~k~de~ 83 (104)
T cd03069 15 LSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTS---D---KQLLEKYGY--G-EGVVLFRPPRLSNKFEDS 83 (104)
T ss_pred hccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEC---h---HHHHHhcCC--C-CceEEEechhhhcccCcc
Confidence 44567788888877621 56788999999998878886633 3 467788888 4 77734421 11122
Q ss_pred eecCCCCCChHHHHHHHHH
Q 023747 109 KFLLESDLTPSNIEEFCSR 127 (278)
Q Consensus 109 ~~~~~g~~~~~~i~~fi~~ 127 (278)
...|.|..+.+.|.+|+..
T Consensus 84 ~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 84 SVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred cccccCcCCHHHHHHHHHh
Confidence 3446898899999999976
No 313
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.17 E-value=0.055 Score=38.88 Aligned_cols=96 Identities=17% Similarity=0.220 Sum_probs=63.0
Q ss_pred eEEEc-ccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeEEEE
Q 023747 150 VQIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFY 227 (278)
Q Consensus 150 v~~l~-~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl~~f 227 (278)
+..++ .+++.+++...+...+|.|+...-+ .....|.++|..++. +..|+..... ++ ..+++ ..|+++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~--~~~~~~~~-~~~~i~l~ 73 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFATFDS--KVAKKLGL-KMNEVDFY 73 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEECcH--HHHHHcCC-CCCcEEEe
Confidence 34553 3558887741556666666665333 345679999999976 5777554422 22 34444 47999999
Q ss_pred eCCCccCceEe-cCCCCHHHHHHHHHHH
Q 023747 228 PAGDKANPIKV-SARSSSKNIAAFIKEQ 254 (278)
Q Consensus 228 ~~g~~~~~~~~-~g~~~~~~l~~~i~~~ 254 (278)
++.... ...| .|..+.+.|.+||..+
T Consensus 74 ~~~~e~-~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 74 EPFMEE-PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCC-CcccCCCCCCHHHHHHHHHHh
Confidence 763322 4578 7788999999999865
No 314
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.13 E-value=0.028 Score=52.69 Aligned_cols=79 Identities=13% Similarity=0.009 Sum_probs=64.3
Q ss_pred ceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCC
Q 023747 39 LDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLT 117 (278)
Q Consensus 39 ~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~ 117 (278)
..+-.|++++ ++|......+.+++.... .|.+-.+|...+ ++++++|++.+. |++ ++++. ..+.|..+
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~---~~~~~~~~v~~V-P~~--~i~~~----~~~~g~~~ 186 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALF---QDEVEARNIMAV-PTV--FLNGE----EFGQGRMT 186 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhC---HhHHHhcCCccc-CEE--EECCc----EEEecCCC
Confidence 4477788888 999999999999999755 599999999999 999999999999 999 34533 22468888
Q ss_pred hHHHHHHHHHH
Q 023747 118 PSNIEEFCSRL 128 (278)
Q Consensus 118 ~~~i~~fi~~~ 128 (278)
.+++.+.+...
T Consensus 187 ~~~~~~~~~~~ 197 (517)
T PRK15317 187 LEEILAKLDTG 197 (517)
T ss_pred HHHHHHHHhcc
Confidence 88777777653
No 315
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.09 E-value=0.012 Score=38.57 Aligned_cols=52 Identities=15% Similarity=0.348 Sum_probs=36.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-C-CC----CCCcCCCeEEEEeCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-H-PK----LQVEEYPTLLFYPAGD 231 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-~-~~----~~i~~~Ptl~~f~~g~ 231 (278)
++.|+++||++|..+...+.+.. +.+..+|++.+. . .. .+...+|++++ +|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~ 59 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGE 59 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 56899999999999988877663 456677777652 3 22 25677887743 554
No 316
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.07 E-value=0.046 Score=44.35 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHH
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEK 190 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~ 190 (278)
+.+..++.|+.+.|++|+.+.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 36788999999999999999888775
No 317
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.03 E-value=0.15 Score=40.85 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=43.7
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCc--------ccchhHHH-HcCCCCCCceE
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE--------DLAKPFLT-LFGLEESKNTV 98 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~--------~~~~~l~~-~~~i~~~~Ptl 98 (278)
+++++|.|+++| +.|++ .+.+++++++|+++ +.+..+.|++. ....++|+ ++|+. + |.+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-F-pv~ 94 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-F-PMF 94 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-c-eeE
Confidence 478999999999 87865 78999999999753 99999998631 11245665 57763 5 666
No 318
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.99 E-value=0.17 Score=37.80 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=66.5
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEe-cCCcceeec-
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF-DNKAISKFL- 111 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~-~~~~~~~~~- 111 (278)
...+++++-|=..| +.|-++...+.++|.+.+.-..+..+|.++- +.+.+.|.+. . |.-+++| +++ .....
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V---pdfn~~yel~-d-P~tvmFF~rnk-hm~vD~ 91 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV---PDFNQMYELY-D-PCTVMFFFRNK-HMMVDF 91 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT---HCCHHHTTS--S-SEEEEEEETTE-EEEEES
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc---hhhhcccccC-C-CeEEEEEecCe-EEEEEe
Confidence 35677888888899 9999999999999999999899999999999 9999999999 4 5433555 433 22222
Q ss_pred -------CCCC-CChHHHHHHHHHHhcC
Q 023747 112 -------LESD-LTPSNIEEFCSRLLHG 131 (278)
Q Consensus 112 -------~~g~-~~~~~i~~fi~~~~~~ 131 (278)
+.+. .+.+++.+-++-+..|
T Consensus 92 GtgnnnKin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 92 GTGNNNKINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SSSSSSSBCS--SCHHHHHHHHHHHHHH
T ss_pred cCCCccEEEEEcCcHHHHHHHHHHHHHH
Confidence 2333 4578888887776543
No 319
>PRK15000 peroxidase; Provisional
Probab=95.98 E-value=0.06 Score=43.86 Aligned_cols=91 Identities=11% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCceEEEEEeC-c-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc-------------------------cchhHHHH
Q 023747 37 DTLDMVYVFAK-A-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLTL 88 (278)
Q Consensus 37 ~~~~~v~F~~~-~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~ 88 (278)
++.+++.||.. | +.|....+.+.+.+.+|+. .+.+..|.++... ....+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 56788888885 6 8999999999999999974 2666666665221 02366777
Q ss_pred cCCC------CCCceEEEEecCCcceeecCCC----CCChHHHHHHHHHHh
Q 023747 89 FGLE------ESKNTVVTAFDNKAISKFLLES----DLTPSNIEEFCSRLL 129 (278)
Q Consensus 89 ~~i~------~~~Ptl~~~~~~~~~~~~~~~g----~~~~~~i~~fi~~~~ 129 (278)
||+. .. |+. ++++..+..++.+.+ .++.+++.+.++.+.
T Consensus 114 ygv~~~~~g~~~-r~t-fiID~~G~I~~~~~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 114 YGIEHPDEGVAL-RGS-FLIDANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred cCCccCCCCcEE-eEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8876 45 888 677755544443323 478888888887643
No 320
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.98 E-value=0.026 Score=40.63 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=59.1
Q ss_pred cccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-----CCCCCcC-CCeEE
Q 023747 154 VGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-----PKLQVEE-YPTLL 225 (278)
Q Consensus 154 ~~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-----~~~~i~~-~Ptl~ 225 (278)
+.+++++++..+ .++++++=+++.|+-.......|++......+ .+.++.+|+-+. ++ .+++|.- =|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 347788877554 56777777999999999998899998888876 489999998877 43 3678764 59999
Q ss_pred EEeCCCccCceEecCCCCHHHH
Q 023747 226 FYPAGDKANPIKVSARSSSKNI 247 (278)
Q Consensus 226 ~f~~g~~~~~~~~~g~~~~~~l 247 (278)
++++|+.+ --.-...++.+.|
T Consensus 84 li~~g~~v-~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVV-WHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEE-EEEEGGG-SHHHH
T ss_pred EEECCEEE-EECccccCCHHhc
Confidence 99999754 1122345666655
No 321
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.96 E-value=0.057 Score=41.37 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=35.1
Q ss_pred cCCceEEEEE-eCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc
Q 023747 36 IDTLDMVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE 79 (278)
Q Consensus 36 ~~~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~ 79 (278)
+.+++++.|| +.| +.|....|.+.++++++.+ .+.+..|..+..
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~ 73 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSP 73 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCH
Confidence 3367777787 788 9999999999999999964 488888776653
No 322
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.94 E-value=0.083 Score=40.85 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCceEEEEEeCc--cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCc
Q 023747 37 DTLDMVYVFAKA--DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE 79 (278)
Q Consensus 37 ~~~~~v~F~~~~--~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~ 79 (278)
+++++|.||..| +.|....+.+.+++++++++ +.|+.|..+..
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 467888999764 67999999999999999753 77887776644
No 323
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.88 E-value=0.062 Score=43.83 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=60.9
Q ss_pred EEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCc--------------c----c------chhHHHHcCCC----
Q 023747 43 YVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADE--------------D----L------AKPFLTLFGLE---- 92 (278)
Q Consensus 43 ~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~--------------~----~------~~~l~~~~~i~---- 92 (278)
.|+..| +.|..-.+.+.+++.+|+. .+.+..|.++.. + + ...+++.||+.
T Consensus 34 ~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~ 113 (202)
T PRK13190 34 SHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS 113 (202)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccC
Confidence 456788 9999999999999999974 366666655521 0 0 35788889984
Q ss_pred --CCCceEEEEecCCcceeecC----CCCCChHHHHHHHHHHhc
Q 023747 93 --ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLLH 130 (278)
Q Consensus 93 --~~~Ptl~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~~ 130 (278)
.. |+. ++++.++..++.. .+.++.+++.+.++.+..
T Consensus 114 g~~~-p~~-fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 114 GATV-RGV-FIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred CcEE-eEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 35 888 7777655444432 556899999999887653
No 324
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.82 E-value=0.021 Score=45.99 Aligned_cols=88 Identities=9% Similarity=0.150 Sum_probs=59.7
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--------------------------CC-CCCC
Q 023747 166 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--------------------------EH-PKLQ 217 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--------------------------~~-~~~~ 217 (278)
++++++.|| +.||+.|....+.+.+...+|... ++.+..|+.+.. .+ ..|+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 578899999 999999999999999999999654 456666665442 11 1234
Q ss_pred C----cCC--CeEEEEeCCCccCce-Eec--CCCCHHHHHHHHHHH
Q 023747 218 V----EEY--PTLLFYPAGDKANPI-KVS--ARSSSKNIAAFIKEQ 254 (278)
Q Consensus 218 i----~~~--Ptl~~f~~g~~~~~~-~~~--g~~~~~~l~~~i~~~ 254 (278)
+ .++ |+.+++..++.+..+ .+. ..++.+++++.|+..
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4 245 899999655544221 221 246889999988543
No 325
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.76 E-value=0.076 Score=38.12 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=57.1
Q ss_pred cCCceEEEEEeCccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecC-CC
Q 023747 36 IDTLDMVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLL-ES 114 (278)
Q Consensus 36 ~~~~~~v~F~~~~~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~-~g 114 (278)
...+.+|.||..... .....|.++|..++..+.|+... . ..+...+++. . |.+ .++.........| .|
T Consensus 18 ~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~---~---~~~~~~~~~~-~-~~i-~l~~~~~e~~~~y~~g 86 (102)
T cd03066 18 EDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATF---D---SKVAKKLGLK-M-NEV-DFYEPFMEEPVTIPDK 86 (102)
T ss_pred cCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEEC---c---HHHHHHcCCC-C-CcE-EEeCCCCCCCcccCCC
Confidence 456778888876521 46678999999998878886533 3 4677888776 4 788 5554322334457 77
Q ss_pred CCChHHHHHHHHH
Q 023747 115 DLTPSNIEEFCSR 127 (278)
Q Consensus 115 ~~~~~~i~~fi~~ 127 (278)
..+.+.|.+|+..
T Consensus 87 ~~~~~~l~~fi~~ 99 (102)
T cd03066 87 PYSEEELVDFVEE 99 (102)
T ss_pred CCCHHHHHHHHHH
Confidence 8899999999976
No 326
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.76 E-value=0.055 Score=41.04 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=35.6
Q ss_pred cCCceEEEEEeCc-cc-hHHHHHHHHHHHHHhcC----ceEEEEEeCCC
Q 023747 36 IDTLDMVYVFAKA-DD-LKSLLEPLEDIARNFKG----KIMFTAVDIAD 78 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~-c~~~~~~~~~la~~~~~----~v~f~~vd~~~ 78 (278)
.++++++.|+.+| +. |....+.+++++.++.. ++.+..|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4567899999999 76 99999999999999975 38888777653
No 327
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.75 E-value=0.018 Score=41.23 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=35.9
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-C---C-CCC----CCcCCCeEEEEeCCCcc
Q 023747 168 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---H-PKL----QVEEYPTLLFYPAGDKA 233 (278)
Q Consensus 168 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~---~-~~~----~i~~~Ptl~~f~~g~~~ 233 (278)
.-++.|..+||++|..+...+.+. ++.+..+|++.. + . ..+ +..++|.++ -+|+.+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV 72 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence 447789999999999987766554 244445565544 2 1 112 567899984 466543
No 328
>PHA03050 glutaredoxin; Provisional
Probab=95.65 E-value=0.027 Score=41.04 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=36.8
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC----CC----C-CCCCcCCCeEEEEeCCCc
Q 023747 168 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----EH----P-KLQVEEYPTLLFYPAGDK 232 (278)
Q Consensus 168 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~----~~----~-~~~i~~~Ptl~~f~~g~~ 232 (278)
.-+++|..+|||+|......+.+..-... .+..+|++.. ++ . .-+..++|.+++ +|+.
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~ 79 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTS 79 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEE
Confidence 34788999999999998877766533221 3445555542 11 1 126678999954 5553
No 329
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.60 E-value=0.015 Score=39.61 Aligned_cols=52 Identities=10% Similarity=0.265 Sum_probs=35.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----CCCcCCCeEEEEeCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVEEYPTLLFYPAGD 231 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~----~~i~~~Ptl~~f~~g~ 231 (278)
+++|+.+||++|......+++. ++.+-.+|++.+ +. .+ .+...+|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 3678899999999998888753 345555666655 22 22 26778999854 554
No 330
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.56 E-value=0.23 Score=40.02 Aligned_cols=91 Identities=9% Similarity=0.008 Sum_probs=62.6
Q ss_pred CceEEEEE-eCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCccc----------------------chhHHHHcCCC
Q 023747 38 TLDMVYVF-AKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDL----------------------AKPFLTLFGLE 92 (278)
Q Consensus 38 ~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~----------------------~~~l~~~~~i~ 92 (278)
+.+++.|| ..| +.|..-.+.+.+++.+|.. .+.+..|..+.... ...+++.||+.
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~ 111 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 111 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCC
Confidence 46788888 788 9999999999999999963 26666655543210 25788889983
Q ss_pred ----CC-CceEEEEecCCcceeecC----CCCCChHHHHHHHHHHh
Q 023747 93 ----ES-KNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 93 ----~~-~Ptl~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~ 129 (278)
+. .|+. .+++.++..+|.+ ...++.+++.+.++.+.
T Consensus 112 ~~~~g~~~r~t-fIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 112 REDEGLADRAT-FVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred cccCCceeeEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 22 1777 7777655544432 33478899998887754
No 331
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.53 E-value=0.06 Score=45.53 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHH
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLA 192 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a 192 (278)
+.+.+++.|+.+.|++|+.+.+.+..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 4567899999999999999987766543
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.50 E-value=0.081 Score=49.61 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=75.7
Q ss_pred chhHHHHHHhccCCcccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc
Q 023747 2 KSSLLKQATLRLPKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED 80 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~ 80 (278)
.|+++..+....|.. .++++.- +.++.+. +...+-.|+++. ++|......+.+++.... .|..-.+|...+
T Consensus 88 ~s~i~~i~~~~~~~~----~l~~~~~-~~~~~~~-~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~- 159 (515)
T TIGR03140 88 TSLVLAILQVGGHGP----KLDEGII-DRIRRLN-GPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALF- 159 (515)
T ss_pred HHHHHHHHHhcCCCC----CCCHHHH-HHHHhcC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhC-
Confidence 456666666655532 2222221 1222222 234466777777 999999999999999877 488999999999
Q ss_pred cchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHH
Q 023747 81 LAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 81 ~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
++++++|++.+. |++ ++++. ..+.|..+.+.+.+.+...
T Consensus 160 --~~~~~~~~v~~V-P~~--~i~~~----~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 160 --QDEVEALGIQGV-PAV--FLNGE----EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --HHHHHhcCCccc-CEE--EECCc----EEEecCCCHHHHHHHHhhc
Confidence 999999999999 999 34433 2246888888777776554
No 333
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.016 Score=42.27 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=52.6
Q ss_pred ceeeeeeeecCCceEEEEEe--------Cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc----chhHHHHcCC-C
Q 023747 27 SLELLKVSQIDTLDMVYVFA--------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL----AKPFLTLFGL-E 92 (278)
Q Consensus 27 ~~~~~~~~~~~~~~~v~F~~--------~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~----~~~l~~~~~i-~ 92 (278)
++...+.....+.++++|++ +| ++|-...|.+.+.-+....++.|+.++..+... ...+-...++ .
T Consensus 15 ~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt 94 (128)
T KOG3425|consen 15 FEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILT 94 (128)
T ss_pred HHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCcee
Confidence 33444444444458888884 57 899999999999999888889999998875421 1234455666 6
Q ss_pred CCCceEEEEe
Q 023747 93 ESKNTVVTAF 102 (278)
Q Consensus 93 ~~~Ptl~~~~ 102 (278)
+. |||+.+.
T Consensus 95 ~v-PTLlrw~ 103 (128)
T KOG3425|consen 95 AV-PTLLRWK 103 (128)
T ss_pred ec-ceeeEEc
Confidence 77 9995554
No 334
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.49 E-value=0.021 Score=38.17 Aligned_cols=64 Identities=19% Similarity=0.304 Sum_probs=42.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-C---CCCCcCCCeEEEEeCCCccCceEecCCCCHH
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-P---KLQVEEYPTLLFYPAGDKANPIKVSARSSSK 245 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~---~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~ 245 (278)
.+|+.++|++|......+.+. ++.+-.+|++.+ +. . +.+...+|.+++ +|+. .-+..+.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~-----~~~G~~~~ 66 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL-----SWSGFRPD 66 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc-----EEeccCHH
Confidence 578889999999988777642 477777888766 22 2 337778999865 4431 33456665
Q ss_pred HHHH
Q 023747 246 NIAA 249 (278)
Q Consensus 246 ~l~~ 249 (278)
.|.+
T Consensus 67 ~~~~ 70 (72)
T TIGR02194 67 KLKA 70 (72)
T ss_pred HHHh
Confidence 5543
No 335
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.46 E-value=0.027 Score=37.68 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----CCCcCCCeEEEEeCCCc
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVEEYPTLLFYPAGDK 232 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~----~~i~~~Ptl~~f~~g~~ 232 (278)
++.|+.++|+.|+.....+++. ++.+-.+|++.+ +. .+ .+-..+|.+++ +|+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 6788999999999988777752 467777888776 22 22 25577898854 5543
No 336
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=95.40 E-value=0.11 Score=39.27 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=35.5
Q ss_pred cCCceEEEEE-eCc-cchHHHHHHHHHHHHHhc-CceEEEEEeCCCc
Q 023747 36 IDTLDMVYVF-AKA-DDLKSLLEPLEDIARNFK-GKIMFTAVDIADE 79 (278)
Q Consensus 36 ~~~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~-~~v~f~~vd~~~~ 79 (278)
.+++++|.|| +.| +.|....+.+.+++++++ ..+.|+.|..+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 4677888888 577 899999999999999985 3488888877654
No 337
>PRK15000 peroxidase; Provisional
Probab=95.39 E-value=0.037 Score=45.10 Aligned_cols=88 Identities=9% Similarity=0.151 Sum_probs=61.3
Q ss_pred CCCcEEEEEEC-CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-----------------------------C-
Q 023747 165 SHKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-----------------------------H- 213 (278)
Q Consensus 165 ~~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-----------------------------~- 213 (278)
.++++++.||+ .||+.|....+.+.+.+.+|+.. ++.+..|.++... +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 46789999999 59999999999999999999754 4666666665320 0
Q ss_pred CCCCCc------CCCeEEEEeCCCccCceEecC----CCCHHHHHHHHHHH
Q 023747 214 PKLQVE------EYPTLLFYPAGDKANPIKVSA----RSSSKNIAAFIKEQ 254 (278)
Q Consensus 214 ~~~~i~------~~Ptl~~f~~g~~~~~~~~~g----~~~~~~l~~~i~~~ 254 (278)
..|++. .+|+.+++...+.+.. .+.+ .++.+++++.|+..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~-~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRH-QVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHHh
Confidence 012444 5788888865554422 2222 47889999988653
No 338
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.37 E-value=0.035 Score=37.17 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=35.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CC----CCCc-CCCeEEEEeCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PK----LQVE-EYPTLLFYPAGD 231 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~----~~i~-~~Ptl~~f~~g~ 231 (278)
+++|+.++|++|......+.+. ++.+-.+|++.+ +. .+ .+.. ++|++++ +|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCE
Confidence 5688899999999988777652 466677777765 22 22 3555 8998753 554
No 339
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.19 E-value=0.54 Score=33.78 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=66.5
Q ss_pred CceEEEEEeCc-cchHHHHHHHHHHHHHhcC--ceEEEEEeCCCcccchhHHH----HcCCCCCCceEEEEecCCcc--e
Q 023747 38 TLDMVYVFAKA-DDLKSLLEPLEDIARNFKG--KIMFTAVDIADEDLAKPFLT----LFGLEESKNTVVTAFDNKAI--S 108 (278)
Q Consensus 38 ~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~--~v~f~~vd~~~~~~~~~l~~----~~~i~~~~Ptl~~~~~~~~~--~ 108 (278)
+..++.|-... ++..++...+.++|+.+.. ++.|+.||-++. +-+.. .|+|.-..|.| ...+-... .
T Consensus 21 g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F---Pllv~yWektF~IDl~~PqI-GVV~vtdadSv 96 (120)
T cd03074 21 GIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF---PLLVPYWEKTFGIDLFRPQI-GVVNVTDADSV 96 (120)
T ss_pred CceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC---chhhHHHHhhcCcccCCCce-eeEecccccce
Confidence 45777777777 8889999999999999874 599999999998 55554 67888444998 77764432 2
Q ss_pred eecCCCC---CChHHHHHHHHHHh
Q 023747 109 KFLLESD---LTPSNIEEFCSRLL 129 (278)
Q Consensus 109 ~~~~~g~---~~~~~i~~fi~~~~ 129 (278)
=+.+++. .+.+++.+|+++++
T Consensus 97 W~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 97 WMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred eEecccccccCcHHHHHHHHHhhC
Confidence 3344443 78999999999864
No 340
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.11 E-value=0.14 Score=37.84 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=43.5
Q ss_pred ecCCceEEEEEe-------Cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc----chhHHH--HcCCCCCCceEEE
Q 023747 35 QIDTLDMVYVFA-------KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL----AKPFLT--LFGLEESKNTVVT 100 (278)
Q Consensus 35 ~~~~~~~v~F~~-------~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~----~~~l~~--~~~i~~~~Ptl~~ 100 (278)
..+.+++++|++ +| ++|....|.+++.-....+...|+.+....... ...+-+ .++|++. ||| +
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I-PTL-i 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI-PTL-I 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS-SEE-E
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec-ceE-E
Confidence 345678888884 47 899999999999999877778887776643310 013444 6999999 999 4
Q ss_pred EecCC
Q 023747 101 AFDNK 105 (278)
Q Consensus 101 ~~~~~ 105 (278)
-++++
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 44433
No 341
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.96 E-value=0.19 Score=36.50 Aligned_cols=96 Identities=14% Similarity=0.217 Sum_probs=59.1
Q ss_pred EEEc-ccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-CCCCCcCCCeEEEEe
Q 023747 151 QIVV-GKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-PKLQVEEYPTLLFYP 228 (278)
Q Consensus 151 ~~l~-~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~~~~i~~~Ptl~~f~ 228 (278)
+.++ .+++.+++....+..+|-|+...-+ .....|.++|..++. +..|+..... ++ .++++. .|.+++|+
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~~~--~~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTFDS--EIFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEChH--HHHHhcCCC-CCceEEEC
Confidence 4443 3567777644436667766665322 346678999999987 5777655532 23 345554 56677773
Q ss_pred CCC-----ccCceEecCC-CCHHH-HHHHHHHH
Q 023747 229 AGD-----KANPIKVSAR-SSSKN-IAAFIKEQ 254 (278)
Q Consensus 229 ~g~-----~~~~~~~~g~-~~~~~-l~~~i~~~ 254 (278)
... ..+...|.|. .+.++ |.+||+++
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 221 1124578887 67756 99999864
No 342
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.95 E-value=0.22 Score=32.56 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=41.8
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHc----CCCCCCceEEEEecCCcceeecCCCC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF----GLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~----~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
++.|+.+| ++|..+...+.+. + +.+..+|.+.. ....+.+ ++.++ |++ .+ ++ ... ++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~---~~~~~~~~~~~~~~~v-P~i-~~-~~---~~i---~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDED---PEALEELKKLNGYRSV-PVV-VI-GD---EHL---SG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCC---HHHHHHHHHHcCCccc-CEE-EE-CC---EEE---ec
Confidence 56788888 9999988888763 3 66677777655 3333333 67788 999 43 32 222 33
Q ss_pred CChHHHHHH
Q 023747 116 LTPSNIEEF 124 (278)
Q Consensus 116 ~~~~~i~~f 124 (278)
.+.+.|.++
T Consensus 64 ~~~~~l~~~ 72 (73)
T cd02976 64 FRPDKLRAL 72 (73)
T ss_pred CCHHHHHhh
Confidence 555566554
No 343
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.89 E-value=0.38 Score=40.82 Aligned_cols=90 Identities=11% Similarity=0.156 Sum_probs=62.7
Q ss_pred CceEEEEE-eCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCc-----------------cc--------chhHHHHc
Q 023747 38 TLDMVYVF-AKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADE-----------------DL--------AKPFLTLF 89 (278)
Q Consensus 38 ~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~-----------------~~--------~~~l~~~~ 89 (278)
+.+++.|| ..| +.|..-.+.|.+++++|.+. +.+..|.++.. +. ...+++.|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 45666777 588 99999999999999999642 55655555531 00 35788999
Q ss_pred CCC-----CCCceEEEEecCCcceeecC----CCCCChHHHHHHHHHHh
Q 023747 90 GLE-----ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 90 ~i~-----~~~Ptl~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~ 129 (278)
|+. .. |+. ++++.++..++.+ ...++.+++.+.++.+.
T Consensus 179 Gv~~~~g~a~-R~t-FIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 179 GLLRDEGFSH-RAS-VLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred CCCCcCCcee-cEE-EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 985 35 888 7777555444432 44578888888887654
No 344
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.89 E-value=0.074 Score=40.72 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 207 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd 207 (278)
+.+..++.|+.++|++|..+.+.+.++...+. ++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEe
Confidence 35678999999999999999999998877653 34444444
No 345
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.88 E-value=0.39 Score=39.81 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=48.1
Q ss_pred CCCCeEEEcccc---hHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 146 TNANVQIVVGKT---FDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 146 ~~~~v~~l~~~~---~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
+...|..+++.+ +.++. +.+++.++.|.+-.|++...-...+++++++|.+ ...|..|.+.+
T Consensus 80 Pns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d--~adFl~VYI~E 144 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD--VADFLIVYIEE 144 (237)
T ss_pred CCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh--hhheehhhHhh
Confidence 345678887766 55554 5689999999999999999999999999999987 34555555543
No 346
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.79 E-value=0.28 Score=40.03 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=59.2
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCc-eEEEEEeCCCcc------------------------cchhHHHHcCCC--
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGK-IMFTAVDIADED------------------------LAKPFLTLFGLE-- 92 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~-v~f~~vd~~~~~------------------------~~~~l~~~~~i~-- 92 (278)
++.|++.| +.|....+.+.+++++|+.. +.+..|.++... ....+++.||+.
T Consensus 30 lf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~ 109 (203)
T cd03016 30 LFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDP 109 (203)
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccc
Confidence 44566788 89999999999999999743 777777666421 024788889986
Q ss_pred --CC---CceEEEEecCCcceeecC----CCCCChHHHHHHHHHHh
Q 023747 93 --ES---KNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 93 --~~---~Ptl~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~~ 129 (278)
+. .|+. .+++.++..++.. ...++.+++.+.++.+.
T Consensus 110 ~~~~~~~~r~~-fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 110 DAGSTLTVRAV-FIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cCCCCceeeEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 22 0346 6777655444433 22467888888887753
No 347
>PRK10638 glutaredoxin 3; Provisional
Probab=94.58 E-value=0.059 Score=37.04 Aligned_cols=52 Identities=8% Similarity=0.213 Sum_probs=35.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCC----CCcCCCeEEEEeCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----QVEEYPTLLFYPAGD 231 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~----~i~~~Ptl~~f~~g~ 231 (278)
+++|..+||++|......+.+. .+.+..+|++.+ +. ..+ +...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5678889999999987777653 356666777766 23 222 6678898854 554
No 348
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.58 E-value=0.08 Score=44.88 Aligned_cols=88 Identities=8% Similarity=0.092 Sum_probs=58.6
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----------------C------------C-C
Q 023747 166 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----------------E------------H-P 214 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-----------------~------------~-~ 214 (278)
++.++++|| +.||+.|....+.+.+...+|+.. ++.+..|.++.. . + .
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 567777777 899999999999999999999754 355666665541 0 0 0
Q ss_pred CCCCc-----CCCeEEEEeCCCccCce-Ee--cCCCCHHHHHHHHHHH
Q 023747 215 KLQVE-----EYPTLLFYPAGDKANPI-KV--SARSSSKNIAAFIKEQ 254 (278)
Q Consensus 215 ~~~i~-----~~Ptl~~f~~g~~~~~~-~~--~g~~~~~~l~~~i~~~ 254 (278)
.|++. ..|+.+++...+.+... .+ ...++.+++.+.|...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 22443 47999999655544221 12 2347889998888643
No 349
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.52 E-value=0.17 Score=39.22 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 208 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~ 208 (278)
+.+..++.|++..|++|..+.+.+.++.+.+-+.+++.+...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 35678999999999999999999999999984333788888876
No 350
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.50 E-value=0.5 Score=39.44 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=55.7
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEE--eCC----------------Cc-----------------
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV--DIA----------------DE----------------- 79 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~v--d~~----------------~~----------------- 79 (278)
..+..++.|..+. +.|+++.+.+.++.+. + +.+..+ ... .+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 4456788888888 9999999998887541 2 333221 110 00
Q ss_pred ------ccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHH
Q 023747 80 ------DLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSR 127 (278)
Q Consensus 80 ------~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 127 (278)
..+..+++++||.+. |++ . +.+|. .. .|..+.+.|.++++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gT-Pti-v-~~~G~--~~--~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGT-PAI-V-LSNGT--LV--PGYQGPKEMKAFLDE 229 (232)
T ss_pred cccchHHHhHHHHHHcCCccc-cEE-E-EcCCe--Ee--eCCCCHHHHHHHHHH
Confidence 005788999999999 999 4 43332 22 688899999999876
No 351
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.49 E-value=0.26 Score=34.16 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=51.5
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHHHcCC--CCCCceEEEEecCCcceeecCCCCC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGL--EESKNTVVTAFDNKAISKFLLESDL 116 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~~~~l~~~~~i--~~~~Ptl~~~~~~~~~~~~~~~g~~ 116 (278)
++.|..+| +.|.+....++++..++.+ +.+..+|..... ....+....|- ... |++ + .++. .. |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tV-P~i-f-i~g~---~i---g-- 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETV-PQI-F-VDEK---HV---G-- 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCc-CeE-E-ECCE---Ee---c--
Confidence 56777788 9999999999998766554 777778877431 11356666664 567 999 3 4432 11 2
Q ss_pred ChHHHHHHHHHHh
Q 023747 117 TPSNIEEFCSRLL 129 (278)
Q Consensus 117 ~~~~i~~fi~~~~ 129 (278)
..++|.+++++..
T Consensus 70 G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 GCTDFEQLVKENF 82 (86)
T ss_pred CHHHHHHHHHhcc
Confidence 3357888877743
No 352
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.46 E-value=0.2 Score=34.27 Aligned_cols=78 Identities=13% Similarity=0.192 Sum_probs=53.8
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc-eeecCCCCCCh
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI-SKFLLESDLTP 118 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~-~~~~~~g~~~~ 118 (278)
+++|..+. +-|..+...+++++.... +.+..||.+++ +.+..+|+. .. |.+ .+-+.... ......+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d---~~l~~~Y~~-~I-PVl-~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDED---PELFEKYGY-RI-PVL-HIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTT---HHHHHHSCT-ST-SEE-EETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCC---HHHHHHhcC-CC-CEE-EEcCcccccccceeCCCCCH
Confidence 45556666 899999999998765544 89999999988 899999996 56 988 44331110 02223467889
Q ss_pred HHHHHHHH
Q 023747 119 SNIEEFCS 126 (278)
Q Consensus 119 ~~i~~fi~ 126 (278)
+.+.+|++
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99988874
No 353
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=94.44 E-value=0.093 Score=39.53 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=41.1
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHc---CCCCCCceEEEEecCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF---GLEESKNTVVTAFDNK 105 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~---~i~~~~Ptl~~~~~~~ 105 (278)
....++.|..+| ++|....|.+.++++...+ +.+-.+..+++ .++.++| |.... |++ .+++.+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~---~el~~~~lt~g~~~I-P~~-I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDEN---KELMDQYLTNGGRSI-PTF-IFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHH---HHHTTTTTT-SS--S-SEE-EEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCC---hhHHHHHHhCCCeec-CEE-EEEcCC
Confidence 345677888899 9999999999999998754 66666655555 5666655 45566 999 666544
No 354
>PRK13189 peroxiredoxin; Provisional
Probab=94.41 E-value=0.31 Score=40.38 Aligned_cols=87 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc------------------------cchhHHHHcCCC--
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED------------------------LAKPFLTLFGLE-- 92 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~i~-- 92 (278)
++.|...| +.|....+.+.+++.+|+. .+.+..|.++... ....+++.||+.
T Consensus 40 L~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~ 119 (222)
T PRK13189 40 LFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISP 119 (222)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCcc
Confidence 33455688 9999999999999999964 2666666555210 024678888875
Q ss_pred -----CCCceEEEEecCCcceeec----CCCCCChHHHHHHHHHHh
Q 023747 93 -----ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 93 -----~~~Ptl~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~~ 129 (278)
.. |+. ++++..+..++. ....++.+++.+.++.+.
T Consensus 120 ~~~~~~~-r~t-fIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 120 GKGTNTV-RAV-FIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred ccCCCce-eEE-EEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 23 777 677755444332 234578888988887654
No 355
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.37 E-value=0.12 Score=41.72 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=67.8
Q ss_pred HHHhccCCcccccccCC-CCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhH
Q 023747 8 QATLRLPKSCTLISNLP-TTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPF 85 (278)
Q Consensus 8 ~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l 85 (278)
|.+.+.|-...++.+.+ ..|-..+.........+|..|.+. ..|..+...+.=+|.+|.- ++|+++-...- ..
T Consensus 129 q~l~~gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~~----ga 203 (273)
T KOG3171|consen 129 QKLSFGPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSNT----GA 203 (273)
T ss_pred HHhhcCCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeeccc----cc
Confidence 44555676655555432 223333444444456788999999 9999999999999999987 99999887755 57
Q ss_pred HHHcCCCCCCceEEEEecCCc
Q 023747 86 LTLFGLEESKNTVVTAFDNKA 106 (278)
Q Consensus 86 ~~~~~i~~~~Ptl~~~~~~~~ 106 (278)
.++|..++. |+| .||.+|.
T Consensus 204 s~~F~~n~l-P~L-liYkgGe 222 (273)
T KOG3171|consen 204 SDRFSLNVL-PTL-LIYKGGE 222 (273)
T ss_pred hhhhcccCC-ceE-EEeeCCc
Confidence 789999999 999 7777664
No 356
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.34 E-value=0.075 Score=43.39 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=33.5
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 168 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 168 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
.+++.|+++||+.|....+.+.+++.+|+.. ++.+..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 3455788999999999999999999999754 46677776654
No 357
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.33 E-value=0.077 Score=37.81 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC-C----CCCcCCCeEEEEeCCC
Q 023747 176 PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP-K----LQVEEYPTLLFYPAGD 231 (278)
Q Consensus 176 ~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~-~----~~i~~~Ptl~~f~~g~ 231 (278)
|||++|......+.+. ++.+..+|++.+ +.. . -+...+|.+++ +|+
T Consensus 25 ~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGE 76 (97)
T ss_pred CCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 8999999987777664 355667787655 321 1 25678898864 554
No 358
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.30 E-value=0.089 Score=36.85 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----C-CCCcCCCeEEEEeCCC
Q 023747 176 PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----K-LQVEEYPTLLFYPAGD 231 (278)
Q Consensus 176 ~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~----~-~~i~~~Ptl~~f~~g~ 231 (278)
|||++|......+... ++.+..+|++.+ ++. + .+-.++|.+++ +|.
T Consensus 21 ~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 7999999987666654 355666676655 331 1 26678999843 554
No 359
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.091 Score=37.90 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=39.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCCC-----CCcCCCeEEEEeCCCc
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPKL-----QVEEYPTLLFYPAGDK 232 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~~~-----~i~~~Ptl~~f~~g~~ 232 (278)
...-+|.|..+||++|..+...|.. +.. ...+..+|-.++ +++++ +-..+|.+++ +|+.
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~ 77 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKF 77 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEE
Confidence 3445777999999999998777776 333 467777776654 34322 3457898876 5543
No 360
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.1 Score=35.70 Aligned_cols=49 Identities=14% Similarity=0.338 Sum_probs=34.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--C-----CCC-CCcCCCeEEE
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--H-----PKL-QVEEYPTLLF 226 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--~-----~~~-~i~~~Ptl~~ 226 (278)
+++|..++|++|......+.+. .+.+..++++..+ - .+. +..++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5778899999999987776622 4666666666553 1 122 6788999886
No 361
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.25 E-value=0.088 Score=43.41 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCcEEE-EEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-C---C-------------------------CC
Q 023747 166 HKDVLL-EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---H-------------------------PK 215 (278)
Q Consensus 166 ~~~~~v-~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~---~-------------------------~~ 215 (278)
++++++ .|+++||+.|....+.+.+.+.+|+.. ++.+..++++.. . . ..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 555554 778999999999999999999999754 466666666543 1 0 01
Q ss_pred CCCc-------CCCeEEEEeCCCccCce-Eec--CCCCHHHHHHHHHHH
Q 023747 216 LQVE-------EYPTLLFYPAGDKANPI-KVS--ARSSSKNIAAFIKEQ 254 (278)
Q Consensus 216 ~~i~-------~~Ptl~~f~~g~~~~~~-~~~--g~~~~~~l~~~i~~~ 254 (278)
|++. ..|+.+++..++.+..+ .+. -.++.+++++.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 1321 35888888655555322 122 247899999999754
No 362
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.20 E-value=0.11 Score=42.33 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=35.4
Q ss_pred CCcEEEEEEC-CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 166 HKDVLLEVYT-PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 166 ~~~~~v~f~~-~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
++.++|+||. .||+.|......+.+++.+|... ++.+..|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence 5788889995 78999988888999999999764 57777777664
No 363
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.12 E-value=0.37 Score=39.69 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=59.9
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc------------------------cchhHHHHcCCC--
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED------------------------LAKPFLTLFGLE-- 92 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~------------------------~~~~l~~~~~i~-- 92 (278)
++.|.+.| +.|..-.+.+.+++.+|.. .+.+..|.++... ....+++.||+.
T Consensus 33 L~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~ 112 (215)
T PRK13599 33 LFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHP 112 (215)
T ss_pred EEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCcc
Confidence 45566788 9999999999999999963 3677766666420 024678888873
Q ss_pred -----CCCceEEEEecCCcceeec----CCCCCChHHHHHHHHHH
Q 023747 93 -----ESKNTVVTAFDNKAISKFL----LESDLTPSNIEEFCSRL 128 (278)
Q Consensus 93 -----~~~Ptl~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~ 128 (278)
.. |+. ++++.++..++. ....++.+++.+.++.+
T Consensus 113 ~~~~~~~-R~t-fIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 113 GKGTNTV-RAV-FIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCCcee-eEE-EEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 45 888 777765544333 23347888898888765
No 364
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.96 E-value=0.73 Score=38.95 Aligned_cols=86 Identities=9% Similarity=0.084 Sum_probs=54.4
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCC--Ccc-c------------------------------
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA--DED-L------------------------------ 81 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~--~~~-~------------------------------ 81 (278)
..+..++.|+.+. ++|+++.+.+.++.+. ++|.+..+... ..+ .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 4455677888888 9999999888876654 33443322110 000 0
Q ss_pred --------------chhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHH
Q 023747 82 --------------AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCS 126 (278)
Q Consensus 82 --------------~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 126 (278)
+..+.+++||+|. |++ .+.+++ +......|....++|.+.+.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GT-Pai-v~~d~~-G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANAT-PAI-YYMDKD-GTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCC-CEE-EEECCC-CCEEEecCCCCHHHHHHHhC
Confidence 2347788999999 999 665543 23223467788888877653
No 365
>PRK13599 putative peroxiredoxin; Provisional
Probab=93.88 E-value=0.11 Score=42.95 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCc-EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC----------------------------CC-CC
Q 023747 166 HKD-VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN----------------------------EH-PK 215 (278)
Q Consensus 166 ~~~-~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~----------------------------~~-~~ 215 (278)
++. +++.|+++||+.|....+.+.+++.+|... ++.+..++++.. .+ ..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 454 467888999999999999999999999654 466666666542 00 01
Q ss_pred CCC-------cCCCeEEEEeCCCccCceE-ec--CCCCHHHHHHHHHHH
Q 023747 216 LQV-------EEYPTLLFYPAGDKANPIK-VS--ARSSSKNIAAFIKEQ 254 (278)
Q Consensus 216 ~~i-------~~~Ptl~~f~~g~~~~~~~-~~--g~~~~~~l~~~i~~~ 254 (278)
|++ ...|+.+++...+.+..+. |. ..++.+++.+.|...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 243 2469999996555553222 22 246889999988653
No 366
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.75 E-value=0.48 Score=39.06 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=59.1
Q ss_pred CceEE-EEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCccc------------------------chhHHHHcC
Q 023747 38 TLDMV-YVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDL------------------------AKPFLTLFG 90 (278)
Q Consensus 38 ~~~~v-~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~------------------------~~~l~~~~~ 90 (278)
+.+++ .|...| +.|....+.|.+++.+|+. .+.+..|.++.... ...+++.||
T Consensus 34 K~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~yg 113 (215)
T PRK13191 34 RWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLG 113 (215)
T ss_pred CcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcC
Confidence 33444 445678 9999999999999999964 26676666663311 236667788
Q ss_pred CC-------CCCceEEEEecCCcceeecC----CCCCChHHHHHHHHHH
Q 023747 91 LE-------ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL 128 (278)
Q Consensus 91 i~-------~~~Ptl~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 128 (278)
+. .. |+. ++++.++..++.+ ...++.+++.+.++.+
T Consensus 114 v~~~~~~~~~~-r~t-fIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 114 MIHAESSTATV-RAV-FIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CcccccCCcee-EEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 63 23 777 6777655444432 3347899999988775
No 367
>PRK13189 peroxiredoxin; Provisional
Probab=93.73 E-value=0.12 Score=42.76 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCcE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-C---------------------------C-CC
Q 023747 166 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-E---------------------------H-PK 215 (278)
Q Consensus 166 ~~~~-~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~---------------------------~-~~ 215 (278)
++.+ ++.|+++||+.|....+.+.+++.+|+.. ++.+..|.++.. . + ..
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 5544 45677999999999999999999999754 455666655532 0 0 01
Q ss_pred CCCc-------CCCeEEEEeCCCccCceEe---cCCCCHHHHHHHHHHHh
Q 023747 216 LQVE-------EYPTLLFYPAGDKANPIKV---SARSSSKNIAAFIKEQL 255 (278)
Q Consensus 216 ~~i~-------~~Ptl~~f~~g~~~~~~~~---~g~~~~~~l~~~i~~~~ 255 (278)
|++. .+|+.+++...+.+..+.+ ...++.+++.+.|+...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 2332 4688888865555522222 13568899999997543
No 368
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.73 E-value=0.66 Score=37.50 Aligned_cols=79 Identities=6% Similarity=0.020 Sum_probs=50.9
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCC--Cccc-------------------------------
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA--DEDL------------------------------- 81 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~--~~~~------------------------------- 81 (278)
.....++.|+.+. ++|+++.+.+.+ ..+.+.+..+... ....
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 4567788888888 999999998876 2222333222111 1001
Q ss_pred ---------chhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 82 ---------AKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 82 ---------~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
...+++++||.+. |++ . +.++. . +.|..+.+.|.+++
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gt-Pti-i-~~~G~--~--~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGT-PTI-V-LADGR--V--VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcc-cEE-E-ECCCe--E--ecCCCCHHHHHhhC
Confidence 4688999999999 999 4 44332 2 36777777777653
No 369
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.59 E-value=0.27 Score=31.26 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=37.2
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc-ccchhHHHHcCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-DLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~-~~~~~l~~~~~i~~~~Ptl 98 (278)
++.|..++ ++|++....+++. + +.+..+|.+.. .....+.+..|..++ |++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~-i~y~~~dv~~~~~~~~~l~~~~g~~~~-P~v 53 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----G-IPYEEVDVDEDEEAREELKELSGVRTV-PQV 53 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----T-BEEEEEEGGGSHHHHHHHHHHHSSSSS-SEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----C-CeeeEcccccchhHHHHHHHHcCCCcc-CEE
Confidence 46677788 9999999998543 3 77888888876 222344444599999 999
No 370
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.57 E-value=0.27 Score=38.51 Aligned_cols=73 Identities=8% Similarity=0.028 Sum_probs=49.1
Q ss_pred eeeeeecCCceEEEEEeCc-cchHHHHH-HH--HHHHHHhcCceEEEEEeCCCcccchhHHHHc--------CCCCCCce
Q 023747 30 LLKVSQIDTLDMVYVFAKA-DDLKSLLE-PL--EDIARNFKGKIMFTAVDIADEDLAKPFLTLF--------GLEESKNT 97 (278)
Q Consensus 30 ~~~~~~~~~~~~v~F~~~~-~~c~~~~~-~~--~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~--------~i~~~~Pt 97 (278)
+.+--+.+++++|.++.+| +.|..+.. .| .++|..++..++-++||.++. +++...| |..|+ |+
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~---Pdid~~y~~~~~~~~~~gGw-Pl 105 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER---PDIDKIYMNAVQAMSGSGGW-PL 105 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----HHHHHHHHHHHHHHHS---S-SE
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC---ccHHHHHHHHHHHhcCCCCC-Cc
Confidence 3444567789999999999 88988764 33 467778887899999999998 8998888 77788 99
Q ss_pred EEEEecCCcc
Q 023747 98 VVTAFDNKAI 107 (278)
Q Consensus 98 l~~~~~~~~~ 107 (278)
. .+.+....
T Consensus 106 ~-vfltPdg~ 114 (163)
T PF03190_consen 106 T-VFLTPDGK 114 (163)
T ss_dssp E-EEE-TTS-
T ss_pred e-EEECCCCC
Confidence 9 55555443
No 371
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.53 E-value=0.15 Score=40.18 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
+.+..++.|+...|++|+.+.+.+..+.+++.+ ++.+..+...
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCc
Confidence 467889999999999999999999999888855 5666655543
No 372
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=93.52 E-value=1.7 Score=31.28 Aligned_cols=104 Identities=8% Similarity=0.050 Sum_probs=74.8
Q ss_pred eEEEcccchHHHhhcC-CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-C-----CCCCcC-C
Q 023747 150 VQIVVGKTFDDLVLNS-HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH-P-----KLQVEE-Y 221 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~-~-----~~~i~~-~ 221 (278)
+++++.+++.++..+. +...+|.|-.+.-+.-.+|.+.+.++|+....++++.|..||-+...+ . .|+|.- -
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 4567777877777544 556777888788888899999999999999988899999999888733 2 234332 3
Q ss_pred CeEEEEeCCCccCceEe--cCC---CCHHHHHHHHHHH
Q 023747 222 PTLLFYPAGDKANPIKV--SAR---SSSKNIAAFIKEQ 254 (278)
Q Consensus 222 Ptl~~f~~g~~~~~~~~--~g~---~~~~~l~~~i~~~ 254 (278)
|.+-+..-.... .+-+ .+. .+.+.|..||.+-
T Consensus 83 PqIGVV~vtdad-SvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 83 PQIGVVNVTDAD-SVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred CceeeEeccccc-ceeEecccccccCcHHHHHHHHHhh
Confidence 888887543332 2233 232 7889999999753
No 373
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=93.34 E-value=0.071 Score=38.61 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=49.4
Q ss_pred ecCCceEEEEEeCc---cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCC
Q 023747 35 QIDTLDMVYVFAKA---DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 35 ~~~~~~~v~F~~~~---~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
..+...+++|...+ .++....=.+-|+.+.+.+.+..+.++...+ ..|..+||+..+ |++ .++.++
T Consensus 24 ~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e---~~L~~r~gv~~~-PaL-vf~R~g 92 (107)
T PF07449_consen 24 AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE---RALAARFGVRRW-PAL-VFFRDG 92 (107)
T ss_dssp HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH---HHHHHHHT-TSS-SEE-EEEETT
T ss_pred hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH---HHHHHHhCCccC-CeE-EEEECC
Confidence 34455555555533 5677777788899999999999888886667 899999999999 999 666555
No 374
>PRK10824 glutaredoxin-4; Provisional
Probab=93.20 E-value=0.12 Score=37.99 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCC----C-CCCcCCCeEEEEeCCCcc
Q 023747 176 PWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EHP----K-LQVEEYPTLLFYPAGDKA 233 (278)
Q Consensus 176 ~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~~----~-~~i~~~Ptl~~f~~g~~~ 233 (278)
|||++|......+.... +.+..+|++.+ ++. + -+...+|.+++ +|+.+
T Consensus 28 p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred CCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 69999999887777653 33334555544 332 1 16778898876 66543
No 375
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=93.08 E-value=0.95 Score=36.71 Aligned_cols=90 Identities=9% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCceEEEEEe-Cc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcc-------------------------cchhHHHH
Q 023747 37 DTLDMVYVFA-KA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIADED-------------------------LAKPFLTL 88 (278)
Q Consensus 37 ~~~~~v~F~~-~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~-------------------------~~~~l~~~ 88 (278)
++.+++.||. .| ..|....+.+.+++++|.. .+.+..|+++... ....+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 3567777775 55 8999888999999999974 3777766666331 02467888
Q ss_pred cCCC------CCCceEEEEecCCcceeecC----CCCCChHHHHHHHHHH
Q 023747 89 FGLE------ESKNTVVTAFDNKAISKFLL----ESDLTPSNIEEFCSRL 128 (278)
Q Consensus 89 ~~i~------~~~Ptl~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 128 (278)
||+. .+ |+. .+++..+..++.. ...++.+++.+.+...
T Consensus 116 ygv~~~~~g~~~-r~~-fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAY-RGL-FIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceE-EEE-EEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8885 34 777 7777654433322 2336666666666554
No 376
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.89 E-value=0.53 Score=34.13 Aligned_cols=79 Identities=13% Similarity=0.280 Sum_probs=52.1
Q ss_pred CceEEEEEeCccchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCc------ceeec
Q 023747 38 TLDMVYVFAKADDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKA------ISKFL 111 (278)
Q Consensus 38 ~~~~v~F~~~~~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~------~~~~~ 111 (278)
...+|.||..... .....|.++|..+++...|+... . ..+..++++.. |.+ .++.+.. .....
T Consensus 20 ~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~---~---~~~~~~~~~~~--~~v-vl~rp~~~~~k~e~~~~~ 88 (107)
T cd03068 20 DVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTF---D---SEIFKSLKVSP--GQL-VVFQPEKFQSKYEPKSHV 88 (107)
T ss_pred CEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEC---h---HHHHHhcCCCC--Cce-EEECcHHHhhhcCcceee
Confidence 6778888876521 46677999999998888886643 3 46778888875 555 4442221 12334
Q ss_pred CCCC-CChHH-HHHHHHH
Q 023747 112 LESD-LTPSN-IEEFCSR 127 (278)
Q Consensus 112 ~~g~-~~~~~-i~~fi~~ 127 (278)
|.|. .+.++ |.+|+.+
T Consensus 89 ~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 89 LNKKDSTSEDELKDFFKE 106 (107)
T ss_pred eeccccchHHHHHHHHhc
Confidence 5666 56655 9999874
No 377
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.70 E-value=0.26 Score=34.06 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=28.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDA 208 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~ 208 (278)
+..|+++.|++|..+.+.+.++.....+ ++.+.....
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEecc
Confidence 4689999999999999999999855554 555555543
No 378
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.60 E-value=0.71 Score=31.28 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=39.0
Q ss_pred ceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 39 LDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 39 ~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
.-+++|..+| +.|.+....+++. | +.+..+|.+.......+....|.... |.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g~~~v-P~i 61 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTGATTV-PQV 61 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHCCCCc-CeE
Confidence 3567788888 9999999998753 3 66667777765443456666688888 999
No 379
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=92.31 E-value=2.9 Score=29.52 Aligned_cols=74 Identities=11% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCcE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCccCceEecCCCCH
Q 023747 166 HKDV-LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 166 ~~~~-~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~ 244 (278)
.+++ ++.|..+. ..|..+...++++|.--. ++.+-..+.. ...|++.+..+|+.. .++|.|-..-
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~---------~~~P~~~i~~~~~~~-gIrF~GiP~G 83 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDD---------ERKPSFSINRPGEDT-GIRFAGIPMG 83 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCC---------CCCCEEEEecCCCcc-cEEEEecCCc
Confidence 4455 55666655 889998888888877654 4555433321 146999998777443 5799999998
Q ss_pred HHHHHHHHH
Q 023747 245 KNIAAFIKE 253 (278)
Q Consensus 245 ~~l~~~i~~ 253 (278)
.++..||..
T Consensus 84 hEf~Slila 92 (94)
T cd02974 84 HEFTSLVLA 92 (94)
T ss_pred hhHHHHHHH
Confidence 898888854
No 380
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=91.53 E-value=0.68 Score=31.25 Aligned_cols=53 Identities=13% Similarity=0.077 Sum_probs=37.1
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc--chhHHHHcCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL--AKPFLTLFGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~--~~~l~~~~~i~~~~Ptl 98 (278)
++.|+.+| +.|..+...+.++... ..+..++...... ...+.+..|..++ |++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~-P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV-PNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC-CeE
Confidence 57788888 9999999999987653 4555666554310 1245566688888 998
No 381
>PRK10329 glutaredoxin-like protein; Provisional
Probab=91.45 E-value=2.3 Score=29.04 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=49.6
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChH
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS 119 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~ 119 (278)
+..|..++ ++|......+.+ +| +.|-.+|.+.........+..|.... |++ .+ ++ ... ++.+.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~~v-Pvv-~i-~~---~~~---~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFRQL-PVV-IA-GD---LSW---SGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCCCc-CEE-EE-CC---EEE---ecCCHH
Confidence 45677788 999998888865 24 88888898876211222344566677 999 43 32 122 367888
Q ss_pred HHHHHHHHHh
Q 023747 120 NIEEFCSRLL 129 (278)
Q Consensus 120 ~i~~fi~~~~ 129 (278)
.|.+.+....
T Consensus 68 ~l~~~~~~~~ 77 (81)
T PRK10329 68 MINRLHPAPH 77 (81)
T ss_pred HHHHHHHhhh
Confidence 8988887765
No 382
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=91.22 E-value=2 Score=35.65 Aligned_cols=54 Identities=9% Similarity=0.114 Sum_probs=44.5
Q ss_pred cccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEE
Q 023747 18 TLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMF 71 (278)
Q Consensus 18 ~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f 71 (278)
++|.++..+...+....++++|.++.|=+-. ++...-.+.|++++++|.+.+.|
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adF 137 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADF 137 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhe
Confidence 5677776666778888899999999999877 88888899999999999875333
No 383
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.12 E-value=0.37 Score=43.81 Aligned_cols=49 Identities=8% Similarity=0.214 Sum_probs=34.7
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC-CC----C---------CCCcCCCeEEE
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE-HP----K---------LQVEEYPTLLF 226 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~-~~----~---------~~i~~~Ptl~~ 226 (278)
+++|..+||++|......+.+. ++.+-.+|+++.. .. + .+..++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999887666653 4666778877552 11 1 25678899966
No 384
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.04 E-value=0.83 Score=29.49 Aligned_cols=51 Identities=22% Similarity=0.278 Sum_probs=36.0
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHHHcCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~~~~l~~~~~i~~~~Ptl 98 (278)
++.|..+| ++|+++...+.+.. +.+..+|..... ....+.+..+.... |++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~-P~~ 54 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTV-PQI 54 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCc-CEE
Confidence 46777888 99999999988764 677788887662 11234444566677 988
No 385
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=91.00 E-value=1.4 Score=35.00 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=24.1
Q ss_pred EEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEE
Q 023747 42 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAV 74 (278)
Q Consensus 42 v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~v 74 (278)
++|.+|. +.|=...|.|.++..+|.+++.|-.|
T Consensus 1 y~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 1 YLFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp -EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred CeeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 3677788 88999999999999999887655443
No 386
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=90.17 E-value=1.3 Score=30.42 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=44.1
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-----------------------------chhHHHHcC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-----------------------------AKPFLTLFG 90 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-----------------------------~~~l~~~~~ 90 (278)
++.|+++. ++|..+.+.+.++.....+++.+......-... ...+.+++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 35788888 999999999999987777777776665543211 135677899
Q ss_pred CCCCCceEEEEe
Q 023747 91 LEESKNTVVTAF 102 (278)
Q Consensus 91 i~~~~Ptl~~~~ 102 (278)
+.+. |++ .+.
T Consensus 81 ~~g~-Pt~-v~~ 90 (98)
T cd02972 81 VTGT-PTF-VVN 90 (98)
T ss_pred CCCC-CEE-EEC
Confidence 9999 999 443
No 387
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.12 E-value=1.9 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=41.9
Q ss_pred EEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHc---CCCCCCceEEEEecCCcceeecCCCCCC
Q 023747 42 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF---GLEESKNTVVTAFDNKAISKFLLESDLT 117 (278)
Q Consensus 42 v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~---~i~~~~Ptl~~~~~~~~~~~~~~~g~~~ 117 (278)
..|..++ +.|.+....+++. + +.|..+|.+.+ +.....+ |.... |.+ . .+++. . -++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~~di~~~---~~~~~~~~~~g~~~v-P~v-~-~~g~~--~---~~G~~ 64 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----G-IAFEEINIDEQ---PEAIDYVKAQGFRQV-PVI-V-ADGDL--S---WSGFR 64 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----C-CceEEEECCCC---HHHHHHHHHcCCccc-CEE-E-ECCCc--E---EeccC
Confidence 3455577 9999999888752 3 77888888876 4444444 77777 999 3 34321 2 24566
Q ss_pred hHHHHH
Q 023747 118 PSNIEE 123 (278)
Q Consensus 118 ~~~i~~ 123 (278)
.+.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 666654
No 388
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.20 E-value=0.58 Score=38.24 Aligned_cols=41 Identities=15% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCceEEEEEeC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQI---EKLAKHFKGLDNLVIAKIDA 208 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~---~~~a~~~~~~~~~~~~~vd~ 208 (278)
+++-+|.|++-.|++|..+.+.+ ..+.+.+.+ ++.+.++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence 45679999999999999999876 777888866 456665554
No 389
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=88.84 E-value=5.5 Score=28.67 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=60.5
Q ss_pred CceEEEEEeCc--cchHHHHHHHHHHHHHhc------C----ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCC
Q 023747 38 TLDMVYVFAKA--DDLKSLLEPLEDIARNFK------G----KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 38 ~~~~v~F~~~~--~~c~~~~~~~~~la~~~~------~----~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
.+.+|+|.... +..+...+.++.+|+++. | .+.|+..|.+-. ..|..-.++..--|.+ .+.+-.
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~t---dsLRDf~nL~d~~P~L-viLDip 90 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMT---DSLRDYTNLPEAAPLL-TILDMS 90 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHH---HHHHHhcCCCccCceE-EEEecc
Confidence 46788888655 567888888888888752 2 144455554433 4566666777443888 777766
Q ss_pred cceeecCCC-CCChHHHHHHHHHHh
Q 023747 106 AISKFLLES-DLTPSNIEEFCSRLL 129 (278)
Q Consensus 106 ~~~~~~~~g-~~~~~~i~~fi~~~~ 129 (278)
...+|.+.- .+|.+.+.+|+.+++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhh
Confidence 666776544 499999999999875
No 390
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.36 E-value=18 Score=32.21 Aligned_cols=166 Identities=13% Similarity=0.145 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHH
Q 023747 49 DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 49 ~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
...+++...++++|..- +++.+-..+ . +.+ . |.+ .+-..+......+-|-.--.++..++..+
T Consensus 31 ~~s~~~~~ll~eia~~S-~kis~~~~~---~-----~~R------k-pSF-~i~r~g~~~gv~FAglPlGHEftSlVLaL 93 (520)
T COG3634 31 EKSKEIKELLDEIASLS-DKISLEEDS---D-----LVR------K-PSF-SINRPGEDQGVRFAGLPLGHEFTSLVLAL 93 (520)
T ss_pred cccHHHHHHHHHHHhhc-cceeeeecC---c-----ccc------C-Cce-eecCCCcccceEEecCcccchHHHHHHHH
Confidence 45678888888888775 345554421 1 111 1 777 66555544444456666666677776665
Q ss_pred hcCcccccccCCCCCCCCCCCeEEEcccchHHHhhc-CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEe
Q 023747 129 LHGTLTPYLKSQPIPDNTNANVQIVVGKTFDDLVLN-SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKID 207 (278)
Q Consensus 129 ~~~~~~~~~~s~~~p~~~~~~v~~l~~~~~~~~i~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd 207 (278)
+.- +...| .+..+-.+. +.. ++..-+=-|++-.|..|...-..++-.+- +.. ++.-..||
T Consensus 94 lqv-------~G~pp--------k~~q~vieq-ik~i~g~~~FETy~SltC~nCPDVVQALN~msv-lNp--~I~H~~Id 154 (520)
T COG3634 94 LQV-------GGHPP--------KEDQDVIEQ-IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSV-LNP--RIKHTAID 154 (520)
T ss_pred HHh-------cCCCC--------chhHHHHHH-HHhcCCceeEEEEEEeeccCChHHHHHHHHHHh-cCC--CceeEEec
Confidence 521 11111 223333333 333 35556777888889999887666665543 332 57777777
Q ss_pred CCCC--CCCCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 208 ASAN--EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 208 ~~~~--~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
..-. +...-+|..+|++++ +|+.- -.|.++.++|..-|.....
T Consensus 155 Ga~Fq~Evear~IMaVPtvfl--nGe~f----g~GRmtleeilaki~~gaa 199 (520)
T COG3634 155 GALFQDEVEARNIMAVPTVFL--NGEEF----GQGRMTLEEILAKIDTGAA 199 (520)
T ss_pred chhhHhHHHhccceecceEEE--cchhh----cccceeHHHHHHHhcCCcc
Confidence 5544 344558999999876 66642 3788999999888765443
No 391
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=87.77 E-value=2.5 Score=28.19 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=47.0
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHh-cCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEec
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNF-KGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 103 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~-~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~ 103 (278)
+.+|-+.. +........+.++.+.+ .+...+-.||..+. +.++..++|-.. ||++...+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~---P~lAe~~~ivAt-PtLvk~~P 64 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ---PQLAEEDKIVAT-PTLVKVLP 64 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC---HhHHhhCCEEEe-chhhhcCC
Confidence 44555555 66777778888887776 56799999999999 999999999999 99965543
No 392
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=2.1 Score=33.27 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=44.5
Q ss_pred CceEEEEEeCc--cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 38 TLDMVYVFAKA--DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 38 ~~~~v~F~~~~--~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
+.++++||-.. +.|..-+-.|++...+|+. ...+.-|..+...-...++++++++ + |.+
T Consensus 31 k~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~-f-~LL 92 (157)
T COG1225 31 KPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT-F-PLL 92 (157)
T ss_pred CcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC-c-eee
Confidence 46788888755 8899999999999999875 3666666666554447888888887 5 555
No 393
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.32 E-value=3.6 Score=27.14 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=37.6
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEecC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDN 104 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~~ 104 (278)
++.|..++ +.|++....+++. + +.+..+|...... ...+.+..+-... |++ ++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----g-i~~~~~di~~~~~~~~el~~~~g~~~v-P~v--~i~~ 59 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----G-LPYVEINIDIFPERKAELEERTGSSVV-PQI--FFNE 59 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHHhCCCCc-CEE--EECC
Confidence 45677777 9999999998863 3 7777888887621 1235555566677 999 5554
No 394
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=86.98 E-value=0.27 Score=42.12 Aligned_cols=85 Identities=14% Similarity=0.251 Sum_probs=65.4
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CC-CCCCCcCCCeEEEEeCCCccCceEecCCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EH-PKLQVEEYPTLLFYPAGDKANPIKVSARS 242 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~ 242 (278)
..++-+.||+.||+..+...|.+.-....|.. +.-..++-... .. .+|++.+.|++.+....- +.+|.|.+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~---~~~~~~~r 149 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC---PASYRGER 149 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc---chhhcccc
Confidence 45778899999999999999999988888874 33333332222 22 588999999999876543 45899999
Q ss_pred CHHHHHHHHHHHhc
Q 023747 243 SSKNIAAFIKEQLK 256 (278)
Q Consensus 243 ~~~~l~~~i~~~~~ 256 (278)
+..+|++|..+.++
T Consensus 150 ~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 150 DLASLVNFYTEITP 163 (319)
T ss_pred cHHHHHHHHHhhcc
Confidence 99999999988886
No 395
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=86.62 E-value=3.5 Score=27.04 Aligned_cols=68 Identities=10% Similarity=0.188 Sum_probs=43.2
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChH
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPS 119 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~ 119 (278)
+++|..++ +.|.+....+++. + +.+..+|.+.......+.+..|...+ |.+ +.++. .. | ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~-i~~~~~~v~~~~~~~~~~~~~g~~~v-P~i--fi~g~---~i---g--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----G-ISYEEIPLGKDITGRSLRAVTGAMTV-PQV--FIDGE---LI---G--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEECCCChhHHHHHHHhCCCCc-CeE--EECCE---EE---e--CHH
Confidence 56677788 9999998888753 3 66777777765322334444577788 999 44432 11 2 355
Q ss_pred HHHHHH
Q 023747 120 NIEEFC 125 (278)
Q Consensus 120 ~i~~fi 125 (278)
+|.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 676665
No 396
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=85.01 E-value=4.9 Score=26.39 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=35.7
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHHHcCCC-CCCceEEEEecC
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLE-ESKNTVVTAFDN 104 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~~~~l~~~~~i~-~~~Ptl~~~~~~ 104 (278)
+..|..++ +.|.+....|++. + +.|..+|.+... ....+.+..|.. +. |++ +.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~i~i~~~~~~~~~~~~~~~~~~~v-P~v--~i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G-VDYEEIDVDGDPALREEMINRSGGRRTV-PQI--FIGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C-CcEEEEECCCCHHHHHHHHHHhCCCCcc-CEE--EECC
Confidence 45677778 9999999998863 3 677777777651 112333445666 77 988 4444
No 397
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=84.86 E-value=6.2 Score=27.39 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=46.9
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHH-hcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEec
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFD 103 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~-~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~ 103 (278)
+=+|++.. +.++.....+.++.+. +.|...+-.||..+. +.++..++|-.. ||++...+
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q---P~lAE~~~IvAT-PtLIK~~P 66 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN---PQLAEEDKILAT-PTLSKILP 66 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC---HhHHhHCCEEEe-cHHhhcCC
Confidence 33455555 7777777788887764 567789999999999 999999999999 99966654
No 398
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=83.74 E-value=2.5 Score=33.61 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=27.8
Q ss_pred EEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 172 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 172 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+|+.|.|+.|-.+.|.+.++...+.. ++.+-.+-...-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~~ 39 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGLM 39 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--SS
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccch
Confidence 68999999999999999999999987 566666654433
No 399
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=83.55 E-value=9.3 Score=27.57 Aligned_cols=68 Identities=12% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceEEEEecCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTVVTAFDNK 105 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl~~~~~~~ 105 (278)
.++++++==++. +-.......|++.+....+.+.++.+|.-++.. ...++.+|||.--.|.+ .++.+|
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~-ili~~g 88 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV-ILIKNG 88 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE-EEEETT
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE-EEEECC
Confidence 344444333444 555667788888888877779999999987611 12466789999444999 555444
No 400
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=83.31 E-value=4.2 Score=27.18 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=32.7
Q ss_pred EEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHHHcCCCCCCceE
Q 023747 42 VYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 42 v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~~~~l~~~~~i~~~~Ptl 98 (278)
..|..++ ++|.+....+++. + +.+..+|.+... ....+.+..|.... |++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~~g~~~v-P~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----G-VTFTEIRVDGDPALRDEMMQRSGRRTV-PQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----C-CCcEEEEecCCHHHHHHHHHHhCCCCc-CEE
Confidence 4566778 9999999999864 2 566666766551 11233334466677 999
No 401
>PRK09301 circadian clock protein KaiB; Provisional
Probab=83.28 E-value=7.5 Score=27.87 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=51.6
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHH-hcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCCC
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESDL 116 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~-~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~ 116 (278)
.+=+|++.. +..+.....+.++.+. +.|...+-.||..+. +.++..++|-.. ||++...+.. ..+. -|+.
T Consensus 8 ~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q---PelAE~~~IvAT-PTLIK~~P~P-~rri--iGDl 79 (103)
T PRK09301 8 ILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN---PQLAEEDKILAT-PTLAKILPPP-VRKI--IGDL 79 (103)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC---HhHHhHCCeEEe-cHHhhcCCCC-ccee--eccc
Confidence 344455655 6777777888888764 567789999999999 999999999999 9996665432 2333 5664
No 402
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=82.04 E-value=15 Score=28.94 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=50.4
Q ss_pred HHHHHHhccCCcccccccCCCCceeeeeeeecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcC-ceEEEEEeCCC
Q 023747 5 LLKQATLRLPKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKG-KIMFTAVDIAD 78 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~ 78 (278)
|+.++....|+..+ +.+.-....+....+.+++++ +-|.-+.-.++.+|+.|.+ +|.+-.++|.+
T Consensus 104 iH~~v~~~~p~~~~---------P~f~~~~~~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 104 IHEEVRKLYPDAKP---------PSFRCEEEDDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp HHHHHHHHSTTSS-----------EEEEEEEETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred HHHHHHHhCCCCcC---------CeEEEEECCCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 67777777777754 344444446667788888888 9999999999999999999 89999988875
No 403
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=81.64 E-value=0.88 Score=39.10 Aligned_cols=87 Identities=8% Similarity=0.153 Sum_probs=63.4
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
...+-..||..| +-.+...|.++-....|.. +....++ +.-..+....++|+.+. |++ .+.+... ...|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~ve--e~~~lpsv~s~~~~~~~-ps~-~~~n~t~--~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVE--ESQALPSVFSSYGIHSE-PSN-LMLNQTC--PASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHH--HHhhcccchhccccccC-Ccc-eeecccc--chhhccc
Confidence 345677899999 6667788888888888874 3333322 22122678889999999 999 6666554 4455999
Q ss_pred CChHHHHHHHHHHhc
Q 023747 116 LTPSNIEEFCSRLLH 130 (278)
Q Consensus 116 ~~~~~i~~fi~~~~~ 130 (278)
++..+|.+|..+++.
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999873
No 404
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=81.16 E-value=5.2 Score=30.68 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=36.4
Q ss_pred ecCCceEEEEEeCc-cchHHHHHHHHHHHHHh--cCceEEEEEeCCCc
Q 023747 35 QIDTLDMVYVFAKA-DDLKSLLEPLEDIARNF--KGKIMFTAVDIADE 79 (278)
Q Consensus 35 ~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~--~~~v~f~~vd~~~~ 79 (278)
....+.++.|+... ++|.++.+.+.++.+++ .|+|.|...+....
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 34456677788877 99999999999999999 88899999888655
No 405
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=80.99 E-value=4.1 Score=30.76 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.0
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDI 76 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~ 76 (278)
..+.++.|+.++ ++|.++.+.+.++...+. ++.+...+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 456778888888 999999999999887764 466665544
No 406
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=80.19 E-value=3.8 Score=32.04 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=35.3
Q ss_pred cCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCC
Q 023747 36 IDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIA 77 (278)
Q Consensus 36 ~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~ 77 (278)
...+.++.|+... ++|..+.+.+.++..++.+++.|..+...
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 4567788888877 99999999999999999888888766654
No 407
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=79.89 E-value=4.1 Score=31.57 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=32.0
Q ss_pred CCcEEEEEE-CCCChhHHHH-HHHHHHHHHHhcCCCce-EEEEEeCCCC
Q 023747 166 HKDVLLEVY-TPWCVTCETT-SKQIEKLAKHFKGLDNL-VIAKIDASAN 211 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~-~~~~~~~a~~~~~~~~~-~~~~vd~~~~ 211 (278)
+++++++|| ..||+.|..- .+.|.+...+|... +. .+..|..+..
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~ 76 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDP 76 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCH
Confidence 345555554 7899999987 88999999999754 34 4666666554
No 408
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=79.80 E-value=3.4 Score=31.80 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=32.8
Q ss_pred EEEEECC------CChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCC----C----CcCCCeEEE
Q 023747 170 LLEVYTP------WCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKL----Q----VEEYPTLLF 226 (278)
Q Consensus 170 ~v~f~~~------~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~----~----i~~~Ptl~~ 226 (278)
+|+|+++ +|++|..+...|+.. ++.+-.+|++.. +. .++ + -..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566677 899999987777654 467777888765 32 121 2 257888775
No 409
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=79.78 E-value=2.6 Score=30.19 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC--CCC----CCcCCCeEEEEeCCCcc-Cc--eEecCC
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKL----QVEEYPTLLFYPAGDKA-NP--IKVSAR 241 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~--~~~----~i~~~Ptl~~f~~g~~~-~~--~~~~g~ 241 (278)
..|+.++|+.|+.....+++. ++.|-.+|..++.. .++ +-.+.+.--++...... +. ..-...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578899999999986666553 45666777665422 122 22232333333322111 00 000245
Q ss_pred CCHHHHHHHHHHHhc
Q 023747 242 SSSKNIAAFIKEQLK 256 (278)
Q Consensus 242 ~~~~~l~~~i~~~~~ 256 (278)
.+.+++.++|.++-.
T Consensus 74 ls~~e~~~~l~~~p~ 88 (105)
T cd02977 74 LSDEEALELMAEHPK 88 (105)
T ss_pred CCHHHHHHHHHhCcC
Confidence 678888888877644
No 410
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=78.40 E-value=7.6 Score=27.56 Aligned_cols=52 Identities=13% Similarity=-0.007 Sum_probs=33.7
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHH----HcCCCCCCceE
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLT----LFGLEESKNTV 98 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~----~~~i~~~~Ptl 98 (278)
-++.|..+| +.|.+....+.+.. +.+..+|.+....+.++.+ .-|.... |++
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tv-P~V 65 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAV-PAV 65 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCc-CeE
Confidence 467788888 99999999887652 4455666665432233323 3356677 998
No 411
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=77.04 E-value=6.6 Score=30.38 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=43.0
Q ss_pred CCceEEEEEe-Cc-cchHHH-HHHHHHHHHHhcCc-e-EEEEEeCCCcccchhHHHHcCC-CCCCceE
Q 023747 37 DTLDMVYVFA-KA-DDLKSL-LEPLEDIARNFKGK-I-MFTAVDIADEDLAKPFLTLFGL-EESKNTV 98 (278)
Q Consensus 37 ~~~~~v~F~~-~~-~~c~~~-~~~~~~la~~~~~~-v-~f~~vd~~~~~~~~~l~~~~~i-~~~~Ptl 98 (278)
++.++++||. .| +.|..- .+.|.+.+.+|+.. + .+..|.++......++++++++ ..+ |.|
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f-~lL 95 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKI-RFL 95 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcE-EEE
Confidence 3456777775 44 899887 99999999999632 4 4777777755444668888888 355 544
No 412
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.84 E-value=12 Score=24.66 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=39.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC---CCCCCCCcCCCeEEEEeCCCccCceEecCCCCHHH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN---EHPKLQVEEYPTLLFYPAGDKANPIKVSARSSSKN 246 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~---~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~ 246 (278)
+..|+.+.|+.|....-.+... + +.+-.++.+.. ++..-....+|++..=..|.. .+ -.....
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g---i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~--~~----l~eS~~ 67 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G---IPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDG--QQ----LVDSSV 67 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C---CceEEEECCchhHHHHHHhCCCccCEEEECCCCCc--cE----EEcHHH
Confidence 3467889999999876444333 2 33333333321 221223456888875211111 01 235678
Q ss_pred HHHHHHHHhc
Q 023747 247 IAAFIKEQLK 256 (278)
Q Consensus 247 l~~~i~~~~~ 256 (278)
|.++|.+++|
T Consensus 68 I~~yL~~~~~ 77 (77)
T cd03040 68 IISTLKTYLG 77 (77)
T ss_pred HHHHHHHHcC
Confidence 8889988765
No 413
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.57 E-value=3.2 Score=27.77 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.9
Q ss_pred EEEECCCChhHHHHHHHHHHH
Q 023747 171 LEVYTPWCVTCETTSKQIEKL 191 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~ 191 (278)
++|++..|+.|..+...++++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 689999999998876666555
No 414
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=74.16 E-value=15 Score=24.95 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=34.1
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc--cchhHHHHc-CCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED--LAKPFLTLF-GLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~--~~~~l~~~~-~i~~~~Ptl 98 (278)
+..|..++ ++|.+....+.+. | +.|..+|.+... ......++- |.... |+|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g-~~~~~i~~~~~~~~~~~~~~~~~~g~~tv-P~I 57 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----G-VDYEEIDVDDDEPEEAREMVKRGKGQRTV-PQI 57 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----C-CCcEEEEecCCcHHHHHHHHHHhCCCCCc-CEE
Confidence 45566677 9999999888843 3 666666666553 223445555 67788 999
No 415
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=72.55 E-value=4.1 Score=29.34 Aligned_cols=33 Identities=15% Similarity=0.042 Sum_probs=22.8
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
.+|+.|+|+.|+.....+.+- ++.+-.+|..+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccC
Confidence 578899999999876555443 355556665554
No 416
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=72.05 E-value=4.5 Score=27.75 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=44.2
Q ss_pred EEEeCc-cchHHHHHHHHHHHHH-hcCceEEEEEeCCCcccchhHHHHcCCCCCCceEE
Q 023747 43 YVFAKA-DDLKSLLEPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVV 99 (278)
Q Consensus 43 ~F~~~~-~~c~~~~~~~~~la~~-~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~ 99 (278)
+|-+.. .........++.+... +.+...+-.||..+. +.++..++|-.. ||++
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~---P~lAe~~~ivAt-PtLi 56 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ---PELAEEDRIVAT-PTLI 56 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS---HSHHTTTEEECH-HHHH
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC---HhHHhHCCeeec-ceEe
Confidence 344555 5667888888888887 456899999999999 999999999999 9993
No 417
>PHA03075 glutaredoxin-like protein; Provisional
Probab=70.43 E-value=8.7 Score=28.10 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=24.5
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHHHh
Q 023747 167 KDVLLEVYTPWCVTCETTSKQIEKLAKHF 195 (278)
Q Consensus 167 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~ 195 (278)
+.+++.|.-|-|+-|.....++.++..+|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 46789999999999999988887766665
No 418
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=70.03 E-value=17 Score=28.64 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=36.4
Q ss_pred CCCcEEEEEECCCC-hhHHHHHHHHHHHHHHhcCCC-ceEEEEEeCCCC
Q 023747 165 SHKDVLLEVYTPWC-VTCETTSKQIEKLAKHFKGLD-NLVIAKIDASAN 211 (278)
Q Consensus 165 ~~~~~~v~f~~~~c-~~c~~~~~~~~~~a~~~~~~~-~~~~~~vd~~~~ 211 (278)
.+++++|.|.=+.| ..|......+.++.+.+.... ++.+..|.+|..
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 47899998888888 579888888888888776432 688888888876
No 419
>PRK10638 glutaredoxin 3; Provisional
Probab=69.96 E-value=20 Score=24.18 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=34.2
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcc-cchhHHHHcCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADED-LAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~-~~~~l~~~~~i~~~~Ptl 98 (278)
+.+|..++ +.|.+....+++. + +.+..+|.+... ....+.+..|.... |++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g~~~v-P~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSGRTTV-PQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhCCCCc-CEE
Confidence 45566677 9999999888864 3 667777887652 11344555566677 988
No 420
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.63 E-value=24 Score=29.69 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=40.1
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEe
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYP 228 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~ 228 (278)
...+++..++ ..++|+.+++..+.||+.|...+=.+-.+-.+|- ++.+.....+..+ .-..+|+++|..
T Consensus 45 ~~~kvsn~d~----~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG---n~~l~~~~S~~~d----~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 45 NFFKVSNQDL----APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG---NFSLEYHYSDPYD----NYPNTPTLIFNN 113 (249)
T ss_pred ceeeecCccc----CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC---CeeeEEeecCccc----CCCCCCeEEEec
Confidence 3455555443 3568999999999999999765433333334443 2422222222211 135678888764
Q ss_pred C
Q 023747 229 A 229 (278)
Q Consensus 229 ~ 229 (278)
-
T Consensus 114 ~ 114 (249)
T PF06053_consen 114 Y 114 (249)
T ss_pred C
Confidence 4
No 421
>PHA03050 glutaredoxin; Provisional
Probab=69.44 E-value=11 Score=27.31 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=35.7
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc----chhHHHHcCCCCCCceE
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL----AKPFLTLFGLEESKNTV 98 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~----~~~l~~~~~i~~~~Ptl 98 (278)
-++.|..+| ++|.+....|.+..-... .|..+|.++... ...+.+.-|-... |++
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tV-P~I 73 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTV-PRI 73 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCc-CEE
Confidence 477788888 999999999987743222 344555554211 1345555677777 999
No 422
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=68.96 E-value=37 Score=23.79 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeCCCccCceEecCCCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPAGDKANPIKVSARSS 243 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~ 243 (278)
.+.++-+|-+...+. ...|+++|..++.+..+.++.-+...+.. -.+-|.+++-+++. .....|.|..+
T Consensus 17 kr~iIgYF~~~~~~e----Y~~f~kvA~~lr~dC~F~v~~G~~~~~~~----~~~~~~i~frp~~~-~~~~~y~G~~t 85 (91)
T cd03070 17 KRNIIGYFESKDSDE----YDNFRKVANILRDDCSFLVGFGDVTKPER----PPGDNIIYFPPGHN-APDMVYLGSLT 85 (91)
T ss_pred CceEEEEEcCCCChh----HHHHHHHHHHHhhcCeEEEEecccccccc----CCCCCeEEECCCCC-CCceEEccCCC
Confidence 444555554433222 56789999999998766666655443211 23335555544433 22468999874
No 423
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=68.04 E-value=5.9 Score=28.76 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=43.1
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCC--CCC----CCcCCCeEEEEeCCCcc-CceEec---C
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANEH--PKL----QVEEYPTLLFYPAGDKA-NPIKVS---A 240 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~--~~~----~i~~~Ptl~~f~~g~~~-~~~~~~---g 240 (278)
.+|+.++|+.|+.....+++- ++.|-.+|...+.. .++ +..+.|.--+++..... +..... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 478899999999987666552 46677777665533 122 33445655555433221 100011 1
Q ss_pred CCCHHHHHHHHHHHh
Q 023747 241 RSSSKNIAAFIKEQL 255 (278)
Q Consensus 241 ~~~~~~l~~~i~~~~ 255 (278)
..+.+++.++|.++-
T Consensus 74 ~~s~~e~~~~l~~~p 88 (111)
T cd03036 74 SLSEEEALELLSSDG 88 (111)
T ss_pred cCCHHHHHHHHHhCc
Confidence 346677777776654
No 424
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=67.93 E-value=23 Score=23.27 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=42.1
Q ss_pred EEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCC-CCCCcCCCeEEEEeCCCccCceEecCCCCHHHHH
Q 023747 172 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHP-KLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIA 248 (278)
Q Consensus 172 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~-~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~ 248 (278)
.++.++|+.|.... ++-.+++. .+.+..++.... ++. ......+|++. .+|..+ .+...|.
T Consensus 1 Ly~~~~Sp~~~kv~-----~~l~~~~i-~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l--------~dS~~I~ 64 (75)
T PF13417_consen 1 LYGFPGSPYSQKVR-----LALEEKGI-PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL--------TDSAAII 64 (75)
T ss_dssp EEEETTSHHHHHHH-----HHHHHHTE-EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE--------ESHHHHH
T ss_pred CCCcCCChHHHHHH-----HHHHHcCC-eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE--------eCHHHHH
Confidence 36778999998875 34444432 344455554332 121 22456789997 455421 3677899
Q ss_pred HHHHHHhcc
Q 023747 249 AFIKEQLKE 257 (278)
Q Consensus 249 ~~i~~~~~~ 257 (278)
++|.++.+.
T Consensus 65 ~yL~~~~~~ 73 (75)
T PF13417_consen 65 EYLEERYPG 73 (75)
T ss_dssp HHHHHHSTS
T ss_pred HHHHHHcCC
Confidence 999887664
No 425
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=67.63 E-value=40 Score=23.69 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=48.0
Q ss_pred CCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcceeecCCCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~ 115 (278)
.+++.+.++... ..|+.+...++++|..- +++.+...+. . . .. |++ .+..++......|.|-
T Consensus 18 ~~pV~l~~f~~~~~~~~e~~~ll~e~a~lS-dkI~~~~~~~--~----~--------~~-P~~-~i~~~~~~~gIrF~Gi 80 (94)
T cd02974 18 ENPVELVASLDDSEKSAELLELLEEIASLS-DKITLEEDND--D----E--------RK-PSF-SINRPGEDTGIRFAGI 80 (94)
T ss_pred CCCEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEecC--C----C--------CC-CEE-EEecCCCcccEEEEec
Confidence 344555455444 88999999999998865 3466644221 1 1 34 999 6665543323455888
Q ss_pred CChHHHHHHHHHH
Q 023747 116 LTPSNIEEFCSRL 128 (278)
Q Consensus 116 ~~~~~i~~fi~~~ 128 (278)
..-.++..|+..+
T Consensus 81 P~GhEf~Slilai 93 (94)
T cd02974 81 PMGHEFTSLVLAL 93 (94)
T ss_pred CCchhHHHHHHHh
Confidence 8888888888764
No 426
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.39 E-value=7.9 Score=29.10 Aligned_cols=34 Identities=12% Similarity=0.337 Sum_probs=22.6
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+.+|+.++|+.|+.....+.+- ++.+-.+|....
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence 4578899999999876555443 345555555444
No 427
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=64.12 E-value=28 Score=22.98 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=37.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--CCCC----CCcCCCeEEEEeCCCccCceEecCCCCH
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--HPKL----QVEEYPTLLFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--~~~~----~i~~~Ptl~~f~~g~~~~~~~~~g~~~~ 244 (278)
..++.++|++|....-.+.+.. +.+-.+++.... ..++ ....+|+++. .+|+.. -...
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~-------l~es 66 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQ-------MFES 66 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeE-------EEcH
Confidence 4677789999988754444432 333334544331 1122 3457898854 222211 2356
Q ss_pred HHHHHHHHHH
Q 023747 245 KNIAAFIKEQ 254 (278)
Q Consensus 245 ~~l~~~i~~~ 254 (278)
..|.+||.+.
T Consensus 67 ~~I~~yL~~~ 76 (77)
T cd03041 67 ADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHh
Confidence 6788887664
No 428
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.50 E-value=20 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=35.3
Q ss_pred hhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHHhcCcc
Q 023747 83 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRLLHGTL 133 (278)
Q Consensus 83 ~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~~~~~~ 133 (278)
...++++||++. |++ .+ + .+|...|..+.+.+.+-+++.++.+.
T Consensus 174 ~~~A~e~gI~gV-P~f-v~-d----~~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 174 EAAAQEMGIRGV-PTF-VF-D----GKYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHHCCCccC-ceE-EE-c----CcEeecCCCCHHHHHHHHHHHHhccc
Confidence 457789999999 999 33 3 35667899999999999999886543
No 429
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=62.99 E-value=28 Score=26.44 Aligned_cols=73 Identities=12% Similarity=0.188 Sum_probs=52.3
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCC---ceEEEEecCCcceeecCCCC
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESK---NTVVTAFDNKAISKFLLESD 115 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~---Ptl~~~~~~~~~~~~~~~g~ 115 (278)
-++.|++|. +=|..+...|+ .+| +.+-.+..++. ..+-+++||..-. =|. ..+ .|-.+|.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-----~~G-f~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~--VI~-----Gy~vEGH 90 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-----ANG-FEVKVVETDDF---LALKRRLGIPYEMQSCHTA--VIN-----GYYVEGH 90 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-----hCC-cEEEEeecCcH---HHHHHhcCCChhhccccEE--EEc-----CEEEecc
Confidence 467778888 88888888876 235 77777777777 7899999998321 233 222 3445899
Q ss_pred CChHHHHHHHHHH
Q 023747 116 LTPSNIEEFCSRL 128 (278)
Q Consensus 116 ~~~~~i~~fi~~~ 128 (278)
.-.+.|..|+...
T Consensus 91 VPa~aI~~ll~~~ 103 (149)
T COG3019 91 VPAEAIARLLAEK 103 (149)
T ss_pred CCHHHHHHHHhCC
Confidence 9999999998763
No 430
>PRK12559 transcriptional regulator Spx; Provisional
Probab=62.91 E-value=10 Score=28.55 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=22.2
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+.+|+.++|+.|+.....+++- ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCC
Confidence 4678899999999876555443 344555555443
No 431
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=62.79 E-value=33 Score=24.12 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=29.6
Q ss_pred Cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceE
Q 023747 47 KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTV 98 (278)
Q Consensus 47 ~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl 98 (278)
+| +.|.+....+.+. + +.|..+|..+... ...+.+.-|-..+ |++
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~-i~~~~~di~~~~~~~~~l~~~tg~~tv-P~v 71 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----G-VPFAYVNVLEDPEIRQGIKEYSNWPTI-PQL 71 (97)
T ss_pred CCCchHHHHHHHHHHc-----C-CCEEEEECCCCHHHHHHHHHHhCCCCC-CEE
Confidence 67 8999999998875 3 5677778765511 1233344455666 998
No 432
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.10 E-value=47 Score=32.11 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=59.1
Q ss_pred CeEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCceEEEEEeCCCC-CCCC-C-------
Q 023747 149 NVQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQ-I--EKLAKHFKGLDNLVIAKIDASAN-EHPK-L------- 216 (278)
Q Consensus 149 ~v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~~a~~~~~~~~~~~~~vd~~~~-~~~~-~------- 216 (278)
+-.....+.|.+. ...++++++-....||..|..|... | .++|..++. +++-++||.++- ++.+ |
T Consensus 27 ~W~pW~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~ 103 (667)
T COG1331 27 DWYPWGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAI 103 (667)
T ss_pred cccccCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHh
Confidence 4566677888874 4779999999999999999988654 3 378888877 688899998877 6643 3
Q ss_pred -CCcCCCeEEEE-eCCC
Q 023747 217 -QVEEYPTLLFY-PAGD 231 (278)
Q Consensus 217 -~i~~~Ptl~~f-~~g~ 231 (278)
+--+.|-=+|. |+|+
T Consensus 104 tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 104 TGQGGWPLTVFLTPDGK 120 (667)
T ss_pred ccCCCCceeEEECCCCc
Confidence 23367877666 5554
No 433
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=60.57 E-value=9.5 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=24.5
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
..|+.++|+.|+.....+.+- ++.+-.+|..+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCC
Confidence 468899999999987666652 466777777655
No 434
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=59.57 E-value=27 Score=26.24 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=36.3
Q ss_pred EEEeCCCCCCCCCCCcCCCeEEEEeCCC--------c-cCceEecCCCCHHHHHHHHHHHh
Q 023747 204 AKIDASANEHPKLQVEEYPTLLFYPAGD--------K-ANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 204 ~~vd~~~~~~~~~~i~~~Ptl~~f~~g~--------~-~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
+.+.++..-+.+|+|+.+|++++.+++. . .....-.|..+.+.-.+.+.+.-
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhC
Confidence 4555555556899999999999998763 0 00124568888888888887553
No 435
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=59.21 E-value=13 Score=27.08 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=23.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+.+|+.++|+.|+.....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCC
Confidence 3478889999999977666553 355666666554
No 436
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=58.82 E-value=31 Score=27.14 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=30.9
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
+.+|+..-|++|....+.+.++...+.+. ++.+.-+...
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccc
Confidence 67889999999999999999999999432 5555555543
No 437
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=57.52 E-value=17 Score=29.47 Aligned_cols=41 Identities=7% Similarity=0.116 Sum_probs=32.8
Q ss_pred CCceEEEEEeCc-cchHHHHHHH---HHHHHHhcCceEEEEEeCC
Q 023747 37 DTLDMVYVFAKA-DDLKSLLEPL---EDIARNFKGKIMFTAVDIA 77 (278)
Q Consensus 37 ~~~~~v~F~~~~-~~c~~~~~~~---~~la~~~~~~v~f~~vd~~ 77 (278)
..+-++.|+.-. ++|.++.+.+ ..+.+.+.+.+.|..+...
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 356789999977 9999999876 8888888877777776653
No 438
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=57.00 E-value=61 Score=23.31 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=34.8
Q ss_pred eEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHc----CCCCCCceE
Q 023747 40 DMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLF----GLEESKNTV 98 (278)
Q Consensus 40 ~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~----~i~~~~Ptl 98 (278)
-+|.|..++ +.|..+...|.+ +.....+..+|-..++ .++-+.+ |-+.. |.+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g--~eiq~~l~~~tg~~tv-P~v 71 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDG--SEIQKALKKLTGQRTV-PNV 71 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCc--HHHHHHHHHhcCCCCC-CEE
Confidence 567788888 999998888877 4445667777766543 3444433 33455 888
No 439
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=56.75 E-value=38 Score=23.30 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=29.7
Q ss_pred Cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCccc-chhHHHHcCCCCCCceE
Q 023747 47 KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDL-AKPFLTLFGLEESKNTV 98 (278)
Q Consensus 47 ~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~-~~~l~~~~~i~~~~Ptl 98 (278)
++ +.|.++...+++.. +.|..+|...... ...+.+..|-..+ |++
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tv-P~v 67 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTF-PQL 67 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCC-CEE
Confidence 46 88999888887752 6677777765521 1234444566677 998
No 440
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=55.60 E-value=97 Score=25.25 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=45.1
Q ss_pred ceeeeeeeecCCceEEEEE-eCc-cchHHHHHHHHHHHHHhc-C---c--eEEEEEeCCCcccchhHHHHcCC-CCCCce
Q 023747 27 SLELLKVSQIDTLDMVYVF-AKA-DDLKSLLEPLEDIARNFK-G---K--IMFTAVDIADEDLAKPFLTLFGL-EESKNT 97 (278)
Q Consensus 27 ~~~~~~~~~~~~~~~v~F~-~~~-~~c~~~~~~~~~la~~~~-~---~--v~f~~vd~~~~~~~~~l~~~~~i-~~~~Pt 97 (278)
...+....-.+++++|.|. +.+ .-|......+..+-+++. + + +.|+.+|-...+ +++.++|.. .-. |.
T Consensus 57 G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt--p~~lk~Y~~~~~~-~~ 133 (207)
T COG1999 57 GKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT--PEVLKKYAELNFD-PR 133 (207)
T ss_pred CCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC--HHHHHHHhcccCC-CC
Confidence 3334444435667777766 445 789888888888877776 2 2 566677766554 888888887 333 55
Q ss_pred E
Q 023747 98 V 98 (278)
Q Consensus 98 l 98 (278)
+
T Consensus 134 ~ 134 (207)
T COG1999 134 W 134 (207)
T ss_pred e
Confidence 5
No 441
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=55.05 E-value=18 Score=28.68 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=24.5
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhc
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFK 196 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~ 196 (278)
+.+|+.+.|+.|....+.+.++...+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 568889999999999999999999983
No 442
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=53.83 E-value=31 Score=25.16 Aligned_cols=45 Identities=4% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCCCCcCCCeEEEEeC
Q 023747 183 TTSKQIEKLAKHFKGLDNLVIAKIDASANEHPKLQVEEYPTLLFYPA 229 (278)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~~ 229 (278)
.+.+....+.+-....... ..+.++..-+.+|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 3344444454444432112 56666666678999999999999877
No 443
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=52.18 E-value=1.2e+02 Score=27.70 Aligned_cols=95 Identities=4% Similarity=0.020 Sum_probs=60.3
Q ss_pred eeeecCCceEEEEEeCc-cchHHHH--HHHHHHHHH-hcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecCCcc
Q 023747 32 KVSQIDTLDMVYVFAKA-DDLKSLL--EPLEDIARN-FKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 32 ~~~~~~~~~~v~F~~~~-~~c~~~~--~~~~~la~~-~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
...+.++.++|-|.... ...+++. --+...... +-..++-++|+...... ..+.+-|-+... |.+ ++++..+.
T Consensus 13 a~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa-~qFs~IYp~v~v-Ps~-ffIg~sGt 89 (506)
T KOG2507|consen 13 AEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAA-TQFSAIYPYVSV-PSI-FFIGFSGT 89 (506)
T ss_pred HHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhh-hhhhhhcccccc-cce-eeecCCCc
Confidence 34456677777787777 6777776 333333333 33447777777765433 567777788888 999 55543333
Q ss_pred eeecCCCCCChHHHHHHHHHHh
Q 023747 108 SKFLLESDLTPSNIEEFCSRLL 129 (278)
Q Consensus 108 ~~~~~~g~~~~~~i~~fi~~~~ 129 (278)
.--...|..+.++|..-|+++.
T Consensus 90 pLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 90 PLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred eeEEeeccccHHHHHHHHHHHH
Confidence 3344578888888888777754
No 444
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=52.14 E-value=42 Score=26.14 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCcEEEEEE-CCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 166 HKDVLLEVY-TPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 166 ~~~~~v~f~-~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
++.++++|| ..+++.|-.-.-.|+.....|... +..+.-|..+.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds 74 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDS 74 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 668888888 367777877777788888888765 45555555543
No 445
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=51.79 E-value=20 Score=27.03 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=22.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+.+|+.++|+.|+.....+.+- ++.|-.+|....
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCC
Confidence 4578889999999865444432 355666665544
No 446
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=47.62 E-value=27 Score=25.47 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=22.4
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+..|+.|.|+.|+.....+++- ++.+-.+|..+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~ 35 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTE 35 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcC
Confidence 3578899999999876544433 355555665544
No 447
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=47.21 E-value=84 Score=20.95 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=41.2
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEE
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLF 226 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~ 226 (278)
.+..|-+...+........+.++-+.+.+ ..+.+--||+.++ +. ..++|-.+||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG-GPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 34555555556676666677777777653 2788999999988 66 5789999999874
No 448
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=62 Score=26.77 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=28.1
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDAS 209 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~ 209 (278)
....++.|....|++|+...+.+.+........ ++.+.-+-..
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f~ 126 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPFL 126 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeecC
Confidence 367899999999999988777777744443332 3444444433
No 449
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=44.98 E-value=58 Score=25.64 Aligned_cols=53 Identities=13% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCceEEEE-EeCc-cchHHHHHHHHHHHHHhcC---ceEEEEEeCCCcccchhHHHHc
Q 023747 37 DTLDMVYV-FAKA-DDLKSLLEPLEDIARNFKG---KIMFTAVDIADEDLAKPFLTLF 89 (278)
Q Consensus 37 ~~~~~v~F-~~~~-~~c~~~~~~~~~la~~~~~---~v~f~~vd~~~~~~~~~l~~~~ 89 (278)
+++++|.| |..+ .-|......+.++.+++.. ++.+..|..+-....++..++|
T Consensus 52 Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 52 GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 35555554 4455 7898888888888777653 3444444444221114444444
No 450
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=44.87 E-value=28 Score=22.50 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=28.3
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCC-CCCcCCCeEEE
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPK-LQVEEYPTLLF 226 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~~-~~i~~~Ptl~~ 226 (278)
++|+.++|++|....-.+... +. .+.+..+|.... ++.+ .....+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl-~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GI-TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CC-CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 467789999998875444333 22 244455554322 2222 24567898863
No 451
>COG3411 Ferredoxin [Energy production and conversion]
Probab=43.16 E-value=53 Score=21.29 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=25.2
Q ss_pred CCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcc
Q 023747 221 YPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKE 257 (278)
Q Consensus 221 ~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~ 257 (278)
=|.+++|++|- .| +..+.++..+++++|+..
T Consensus 17 gPvl~vYpegv-----WY-~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 17 GPVLVVYPEGV-----WY-TRVDPEDARRIVQSHLLG 47 (64)
T ss_pred CCEEEEecCCe-----eE-eccCHHHHHHHHHHHHhC
Confidence 39999999982 34 478899999999999863
No 452
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=41.65 E-value=92 Score=25.38 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=34.6
Q ss_pred CCCcEEEEEECCCCh-hHHHHHHHHHHHHHHhc-CCC-ceEEEEEeCCCC
Q 023747 165 SHKDVLLEVYTPWCV-TCETTSKQIEKLAKHFK-GLD-NLVIAKIDASAN 211 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~-~c~~~~~~~~~~a~~~~-~~~-~~~~~~vd~~~~ 211 (278)
.+++++|.|.=+.|+ .|......+..+-+.+. ... ++.++.|.+|.+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe 115 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE 115 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC
Confidence 478899988767774 79888888888888876 332 566666666665
No 453
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=41.51 E-value=59 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=20.9
Q ss_pred CCeEEEEeC-CCccCceEecCCCCHHHHHHHHHHHh
Q 023747 221 YPTLLFYPA-GDKANPIKVSARSSSKNIAAFIKEQL 255 (278)
Q Consensus 221 ~Ptl~~f~~-g~~~~~~~~~g~~~~~~l~~~i~~~~ 255 (278)
-|+++++.. |+....+ --..++.+.+.+|++++.
T Consensus 42 ~P~L~l~d~~g~~~E~i-~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERI-NIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp --EEEEE-SSS--SEEE-E-SSSSHCHHHHHHHHHT
T ss_pred CCEEEEEcCCCCEEEEE-EcccCCHHHHHHHHHHhC
Confidence 499999974 4434332 335789999999998864
No 454
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=40.09 E-value=72 Score=26.62 Aligned_cols=59 Identities=10% Similarity=0.230 Sum_probs=42.6
Q ss_pred eEEEcccchHHHhhcCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC--ceEEEEEeCCC
Q 023747 150 VQIVVGKTFDDLVLNSHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLD--NLVIAKIDASA 210 (278)
Q Consensus 150 v~~l~~~~~~~~i~~~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~--~~~~~~vd~~~ 210 (278)
...+.+.+ .+....+++++|.+-..+|..|..-...++.|..++...+ ++.|..||--.
T Consensus 12 ~W~i~~~~--pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 12 PWKIGGQD--PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred CceECCch--HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 34444433 2333457888999999999999988888888888875443 78999998543
No 455
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=39.89 E-value=88 Score=28.52 Aligned_cols=51 Identities=10% Similarity=-0.007 Sum_probs=35.2
Q ss_pred EEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHH---------cCCCCCCceE
Q 023747 41 MVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL---------FGLEESKNTV 98 (278)
Q Consensus 41 ~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~---------~~i~~~~Ptl 98 (278)
++.|..+| ++|.+....+.+. | +.|..+|.++.....++.++ .|..+. |++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tv-P~i 64 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTV-PQI 64 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCcc-CeE
Confidence 66788888 9999999988874 4 77778888766211123223 356677 999
No 456
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=38.68 E-value=92 Score=18.96 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=27.8
Q ss_pred EEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC---C-CCCCCcCCCeEEE
Q 023747 172 EVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE---H-PKLQVEEYPTLLF 226 (278)
Q Consensus 172 ~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~---~-~~~~i~~~Ptl~~ 226 (278)
+|+.++|+.|....-.+....- .+....++..... . .......+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778899999887655544422 2334444433221 1 1235567898764
No 457
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=37.84 E-value=1.2e+02 Score=23.26 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=33.2
Q ss_pred EEEEEeC------c-cchHHHHHHHHHHHHHhcCceEEEEEeCCCc-ccchhHHHHcCC----CCCCceE
Q 023747 41 MVYVFAK------A-DDLKSLLEPLEDIARNFKGKIMFTAVDIADE-DLAKPFLTLFGL----EESKNTV 98 (278)
Q Consensus 41 ~v~F~~~------~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~-~~~~~l~~~~~i----~~~~Ptl 98 (278)
++.|+++ + ++|..+...++.. .|.|..+|.... ....+|.+..+- ... |.|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tv-PqV 64 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSL-PRV 64 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCC-CEE
Confidence 3455555 6 8999998888765 277788888654 112345555554 455 888
No 458
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.75 E-value=77 Score=26.31 Aligned_cols=40 Identities=23% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCCCCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcccC
Q 023747 214 PKLQVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKD 259 (278)
Q Consensus 214 ~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 259 (278)
.+++|+++|++++ +++ +..+|..+.+-+..-|++.++.+.
T Consensus 178 ~e~gI~gVP~fv~--d~~----~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 178 QEMGIRGVPTFVF--DGK----YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHCCCccCceEEE--cCc----EeecCCCCHHHHHHHHHHHHhccc
Confidence 4679999999999 332 357899999999999999887654
No 459
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=62 Score=26.77 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=28.8
Q ss_pred hhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHHHHH
Q 023747 83 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 83 ~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 128 (278)
..+.+++||.+. ||+ +++++ .+.|..+.++|.+.+...
T Consensus 205 ~~~a~~~gv~gT-Pt~--~v~~~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGT-PTF--IVNGK-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcC-CeE--EECCe-----eecCCCCHHHHHHHHHHh
Confidence 467788999999 999 44443 347888888888888764
No 460
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=36.76 E-value=2.6e+02 Score=23.63 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=62.9
Q ss_pred HHHHhccCCcccccccCCCCceeeeeeeecCCceEEEEEeCc-cch-HH-HHHHHHHHHHHhcCceEEEEEeCCCccc--
Q 023747 7 KQATLRLPKSCTLISNLPTTSLELLKVSQIDTLDMVYVFAKA-DDL-KS-LLEPLEDIARNFKGKIMFTAVDIADEDL-- 81 (278)
Q Consensus 7 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~F~~~~-~~c-~~-~~~~~~~la~~~~~~v~f~~vd~~~~~~-- 81 (278)
..-++++|...- ..+ ..+...+-..++++..++..|+..| ..| +. ..|...+....=.+.++++.||..++-.
T Consensus 95 ~~kAlyFP~l~g-~tL-~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~ 172 (252)
T PF05176_consen 95 ADKALYFPNLQG-KTL-AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKS 172 (252)
T ss_pred HHhCCcCCCCcc-ccC-CCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHH
Confidence 345667776642 222 2223344455667777778888877 333 33 3355555544433357777666665422
Q ss_pred ------------------------------chhHHHHcCCCCCC-ceEEEEecCCcceeecCCCCCChHHHHHHHH
Q 023747 82 ------------------------------AKPFLTLFGLEESK-NTVVTAFDNKAISKFLLESDLTPSNIEEFCS 126 (278)
Q Consensus 82 ------------------------------~~~l~~~~~i~~~~-Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 126 (278)
...+-+.+|+.... ..+ .+.|.....++.=.|..+.+++.....
T Consensus 173 ~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYv-yLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 173 WLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYV-YLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeE-EEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 12344555555322 334 555555555665566677777765543
No 461
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=36.72 E-value=43 Score=21.58 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=27.7
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCCCC-CCcCCCeEEE
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EHPKL-QVEEYPTLLF 226 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-----~~~~~-~i~~~Ptl~~ 226 (278)
..|+.+.|+.|....-.+...+-. +....+|.... ++.+. ....+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~------~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE------LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC------CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 467889999998765444443222 34444554332 11122 3456899963
No 462
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=36.38 E-value=2.6e+02 Score=23.54 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHH----cCCCC
Q 023747 53 SLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTL----FGLEE 93 (278)
Q Consensus 53 ~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~----~~i~~ 93 (278)
.+...+++.+..-.|++.+-.+|.... +...++ +||.+
T Consensus 47 ~v~~lL~~y~~~s~g~i~v~~iDp~~~---~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 47 QVRDLLDEYARYSPGKIKVEFIDPDEN---PSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCC---hHHHHHHHHhcCCCc
Confidence 344444444444456899999999655 455555 88876
No 463
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=35.62 E-value=2e+02 Score=21.85 Aligned_cols=90 Identities=10% Similarity=0.156 Sum_probs=55.8
Q ss_pred cCCCcEEEEEECCCCh----hHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC--------------------CCCCCCc
Q 023747 164 NSHKDVLLEVYTPWCV----TCETTSKQIEKLAKHFKGLDNLVIAKIDASANE--------------------HPKLQVE 219 (278)
Q Consensus 164 ~~~~~~~v~f~~~~c~----~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~--------------------~~~~~i~ 219 (278)
.+.|..+|+.++|.-. .|+...- =+.+..-+++ ++.+--.|+...+ +..++..
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~ 95 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD 95 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC
Confidence 3478889999987653 4444310 1233334444 6777777766543 1245689
Q ss_pred CCCeEEEEeCCC-ccCc-eEecCCCCHHHHHHHHHHHhc
Q 023747 220 EYPTLLFYPAGD-KANP-IKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 220 ~~Ptl~~f~~g~-~~~~-~~~~g~~~~~~l~~~i~~~~~ 256 (278)
.+|.+.+.-... ...- -+..|..+.++++.-|.+.++
T Consensus 96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 999999884332 2211 156899999999998876553
No 464
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=35.29 E-value=59 Score=25.54 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=26.4
Q ss_pred hhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 83 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 83 ~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
...+.++||.|. |++ .+ +++ +.+.|....+.+.+.+
T Consensus 157 ~~~a~~~gv~Gv-P~~-vv-~g~----~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGV-PTF-VV-NGK----YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSS-SEE-EE-TTT----EEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCccc-CEE-EE-CCE----EEEECCCCHHHHHHHh
Confidence 467789999999 999 44 332 4457888888777665
No 465
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=35.27 E-value=52 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.0
Q ss_pred EEEEECCCChhHHHHHHHHHHHH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLA 192 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a 192 (278)
+..|+.|.|+.|+.....+++-+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 56788999999999877666543
No 466
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=34.68 E-value=26 Score=22.57 Aligned_cols=67 Identities=15% Similarity=0.087 Sum_probs=35.9
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCC-CCCcCCCeEEEEeCCCccCceEecCCCCHHHH
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPK-LQVEEYPTLLFYPAGDKANPIKVSARSSSKNI 247 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~~-~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l 247 (278)
..|+.++|+.|....-.+...+-. +....+|.... ++.+ .....+|++.. +|. . -.....|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~-~-------l~es~aI 65 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLVD--RDL-V-------LYESRII 65 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEEE--CCE-E-------EEcHHHH
Confidence 467889999999876555444332 33333443322 2222 23457887742 332 1 2345677
Q ss_pred HHHHHH
Q 023747 248 AAFIKE 253 (278)
Q Consensus 248 ~~~i~~ 253 (278)
.++|.+
T Consensus 66 ~~yL~~ 71 (73)
T cd03059 66 MEYLDE 71 (73)
T ss_pred HHHHHh
Confidence 777654
No 467
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=34.28 E-value=42 Score=21.41 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=28.1
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCCC-CCCcCCCeEEE
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-----EHPK-LQVEEYPTLLF 226 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-----~~~~-~~i~~~Ptl~~ 226 (278)
.+|+.++|++|....-.+....-. +....++.... +..+ .....+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~------~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID------VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC------ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467889999999876555444222 33344543321 1222 23456799864
No 468
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.22 E-value=59 Score=25.82 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=25.8
Q ss_pred hhHHHHcCCCCCCceEEEEecCCcceeecCCCCCChHHHHHHH
Q 023747 83 KPFLTLFGLEESKNTVVTAFDNKAISKFLLESDLTPSNIEEFC 125 (278)
Q Consensus 83 ~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~~g~~~~~~i~~fi 125 (278)
...+.+.||.|. |++ . +++ +|...|..+.+.+.+.+
T Consensus 165 ~~~a~~~gv~G~-Pt~-v-v~g----~~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGV-PFF-V-FNG----KYAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcC-CEE-E-ECC----eEeecCCCCHHHHHHHh
Confidence 456678899999 999 3 343 35567888888776654
No 469
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=1e+02 Score=25.10 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=29.6
Q ss_pred hhHHHHcCCCCCCceEEEEecCCcceeecC-CC--CCChHHHHHHHHHHh
Q 023747 83 KPFLTLFGLEESKNTVVTAFDNKAISKFLL-ES--DLTPSNIEEFCSRLL 129 (278)
Q Consensus 83 ~~l~~~~~i~~~~Ptl~~~~~~~~~~~~~~-~g--~~~~~~i~~fi~~~~ 129 (278)
..++++.|+.|+ ||+ .+-.++. .+.+ .| -.+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~Gf-PTl-~le~ng~--~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGF-PTL-ALERNGT--MYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCC-Cee-eeeeCCc--eEeccCCcccCCcHHHHHHHHHHH
Confidence 579999999999 999 5555443 3332 33 256678888777654
No 470
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=33.36 E-value=1.9e+02 Score=20.99 Aligned_cols=46 Identities=4% Similarity=0.160 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEecC
Q 023747 49 DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAFDN 104 (278)
Q Consensus 49 ~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~~~ 104 (278)
+..+.....+.++..+-... .+..-+ +.+-++|+|+.. |++ .+..+
T Consensus 35 g~~~~t~~~~~~l~~~~~~~-----~~v~Id---P~~F~~y~I~~V-Pa~-V~~~~ 80 (113)
T PF09673_consen 35 GSFKPTAKAIQELLRKDDPC-----PGVQID---PRLFRQYNITAV-PAF-VVVKD 80 (113)
T ss_pred CCHHHHHHHHHHHhhccCCC-----cceeEC---hhHHhhCCceEc-CEE-EEEcC
Confidence 43444555555555554332 222334 889999999999 999 44444
No 471
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=32.14 E-value=2e+02 Score=20.97 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=48.6
Q ss_pred eEEEEEeCc--cchHHHHHHHHHHHHHhcCc-eEEEEE-eCCCccc--------chhHHHHcCCCCCCceEEEEecCCcc
Q 023747 40 DMVYVFAKA--DDLKSLLEPLEDIARNFKGK-IMFTAV-DIADEDL--------AKPFLTLFGLEESKNTVVTAFDNKAI 107 (278)
Q Consensus 40 ~~v~F~~~~--~~c~~~~~~~~~la~~~~~~-v~f~~v-d~~~~~~--------~~~l~~~~~i~~~~Ptl~~~~~~~~~ 107 (278)
.+|.|..+. +..+.....+.+....+.+. +.+..+ +...... ...+-+.|++....-++ .+.+..++
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~-vLiGKDG~ 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTV-VLIGKDGG 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEE-EEEeCCCc
Confidence 444444323 33455566666655555542 444444 3333310 12788999977431344 33333334
Q ss_pred eeecCCCCCChHHHHHHHHHH
Q 023747 108 SKFLLESDLTPSNIEEFCSRL 128 (278)
Q Consensus 108 ~~~~~~g~~~~~~i~~fi~~~ 128 (278)
.+-.+....+.++|-+.|+..
T Consensus 91 vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 VKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEecCCCCCHHHHHHHHhCC
Confidence 455567789999999888763
No 472
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=30.96 E-value=1.9e+02 Score=20.92 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 165 SHKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
.+++++|.=.|+.|+.-. -...++++..+|+.. .+.+..+=|...
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHHh
Confidence 378899999999999888 566899999999854 588888777654
No 473
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=30.92 E-value=56 Score=23.60 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=23.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCC
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASANE 212 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~~ 212 (278)
.+|+.+.|+.|+.....+++- ++.+-.+|..+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCC
Confidence 578899999999875444433 3566667766553
No 474
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=30.82 E-value=1.6e+02 Score=22.17 Aligned_cols=43 Identities=5% Similarity=0.064 Sum_probs=28.1
Q ss_pred hhHHHHcCCCCCCceEEEEecCCc----------ceeecCCCCCChHHHHHHHHH
Q 023747 83 KPFLTLFGLEESKNTVVTAFDNKA----------ISKFLLESDLTPSNIEEFCSR 127 (278)
Q Consensus 83 ~~l~~~~~i~~~~Ptl~~~~~~~~----------~~~~~~~g~~~~~~i~~fi~~ 127 (278)
+.+-++|+|+.. |++ .+..++. .......|+.+.+...+.+.+
T Consensus 61 P~lF~~f~I~~V-Pa~-V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 61 PQWFKQFDITAV-PAF-VVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred hHHHhhcCceEc-CEE-EEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 889999999999 999 4444332 112234577776666555554
No 475
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=29.93 E-value=60 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=23.2
Q ss_pred EEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 171 LEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 171 v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
.+|+.|.|+.|+.....+++- ++.+-.+|..+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCC
Confidence 478899999999876555543 355666776655
No 476
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=28.70 E-value=1.3e+02 Score=22.18 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=26.7
Q ss_pred CcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhc
Q 023747 218 VEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLK 256 (278)
Q Consensus 218 i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~ 256 (278)
...+|.+++|++.+.++ -+.--.+...+.+-+.++++
T Consensus 80 wp~~PiL~YFkE~qsiH--FlPiiFd~~~L~~~l~~r~~ 116 (116)
T PF11317_consen 80 WPGFPILFYFKETQSIH--FLPIIFDPKQLREQLEERCG 116 (116)
T ss_pred cCCCCEEEEEecCCcce--eeeeecCHHHHHHHHHHhCc
Confidence 46799999999988775 33445677777777766654
No 477
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=28.64 E-value=25 Score=22.57 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=28.3
Q ss_pred CCcCCCeEEEEeCCCccCceEecCCCCHHHHHHHHHHHhcccCCCCchhh
Q 023747 217 QVEEYPTLLFYPAGDKANPIKVSARSSSKNIAAFIKEQLKEKDQSPKDEQ 266 (278)
Q Consensus 217 ~i~~~Ptl~~f~~g~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~ 266 (278)
+..++|+|+ .|.- .+.+....+. +|.+|+++-++.+.+..++|.
T Consensus 14 Ga~~lP~II---GGSD--Li~h~~~kns-eleeWl~~e~E~~~q~~reEs 57 (65)
T PF08599_consen 14 GAGGLPHII---GGSD--LIAHHAGKNS-ELEEWLRQEMEEQRQQAREES 57 (65)
T ss_pred CCCCCCeee---cchh--hhhccccccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 445788887 3432 3355545454 899999999987665555444
No 478
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=28.62 E-value=1.6e+02 Score=26.02 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=54.6
Q ss_pred EEEEEECCCChhHHHH----HHHHHHHHHHhcCCC-ceEEEEEeCCCC---CC--CCCCCcC--CCeEEEEeCCCccCce
Q 023747 169 VLLEVYTPWCVTCETT----SKQIEKLAKHFKGLD-NLVIAKIDASAN---EH--PKLQVEE--YPTLLFYPAGDKANPI 236 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~----~~~~~~~a~~~~~~~-~~~~~~vd~~~~---~~--~~~~i~~--~Ptl~~f~~g~~~~~~ 236 (278)
..+.|.| ||.|-.. .....++-+.+.... .+.++-+-|--| +. +.+++.. -|...+|.+|+.++
T Consensus 257 ~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~-- 332 (361)
T COG0821 257 RGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK-- 332 (361)
T ss_pred cCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE--
Confidence 4444443 6666443 344445555554433 377777777655 22 4666554 69999999998765
Q ss_pred EecCCCCHHHHHHHHHHHhccc
Q 023747 237 KVSARSSSKNIAAFIKEQLKEK 258 (278)
Q Consensus 237 ~~~g~~~~~~l~~~i~~~~~~~ 258 (278)
+..++.-.++|.+.+.++....
T Consensus 333 ~~~~~~~~eel~~~i~~~~~~~ 354 (361)
T COG0821 333 KLPEEDIVEELEALIEAYAEER 354 (361)
T ss_pred ecChhhHHHHHHHHHHHHHHHh
Confidence 5677777788888887776543
No 479
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=27.27 E-value=57 Score=20.87 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=13.6
Q ss_pred EEECCCChhHHHHHHHHHH
Q 023747 172 EVYTPWCVTCETTSKQIEK 190 (278)
Q Consensus 172 ~f~~~~c~~c~~~~~~~~~ 190 (278)
.++.++|++|...+-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 5677899999987644433
No 480
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.20 E-value=2.2e+02 Score=22.14 Aligned_cols=60 Identities=8% Similarity=-0.017 Sum_probs=43.0
Q ss_pred eecCCceEEEEEeCc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCC
Q 023747 34 SQIDTLDMVYVFAKA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEES 94 (278)
Q Consensus 34 ~~~~~~~~v~F~~~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~ 94 (278)
+.++..++..|=+-+ +-|..-...|.+.|.++.+ +.+..|..+-.-...++|...||...
T Consensus 42 ~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~DLPFAq~RfC~aeGi~nv 102 (158)
T COG2077 42 FAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMDLPFAQKRFCGAEGIENV 102 (158)
T ss_pred cCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCCChhHHhhhhhhcCcccc
Confidence 344444455555555 8999999999999999998 55666666533233789999999866
No 481
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=25.87 E-value=1.6e+02 Score=23.03 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Q 023747 166 HKDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASA 210 (278)
Q Consensus 166 ~~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~ 210 (278)
++...+.++++.++.|.-+.-.++.+|+.|.+. ++.+-.+++.+
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~-~v~i~~~~~~~ 170 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFEL-DVEIEHVECMH 170 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEE-EEEEEEEECCC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCC-CeEEEEecccC
Confidence 567788999999999999999999999999863 47776666543
No 482
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=24.82 E-value=1.1e+02 Score=20.74 Aligned_cols=52 Identities=8% Similarity=0.089 Sum_probs=28.8
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC--CCCC-CCCcCCCeEEE
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN--EHPK-LQVEEYPTLLF 226 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~--~~~~-~~i~~~Ptl~~ 226 (278)
.+..|+.+.|++|....-.+... +. .+.+..++.... ++.+ .....+|.+..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~-----gl-~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAK-----NI-PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHc-----CC-CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 35567788899998875444333 32 234444554322 1222 23556898874
No 483
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=24.71 E-value=5.6e+02 Score=23.63 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=48.9
Q ss_pred CCCcEEEEEECCCChhHHHHH--HHHHHH-HHHhcCCCceEEEEEeCCCCCC----CCCCCcCCCeEEEEeC-CCccCce
Q 023747 165 SHKDVLLEVYTPWCVTCETTS--KQIEKL-AKHFKGLDNLVIAKIDASANEH----PKLQVEEYPTLLFYPA-GDKANPI 236 (278)
Q Consensus 165 ~~~~~~v~f~~~~c~~c~~~~--~~~~~~-a~~~~~~~~~~~~~vd~~~~~~----~~~~i~~~Ptl~~f~~-g~~~~~~ 236 (278)
.++.++|.|.+..-.....+. ..+... +..+.. .++..+|+...... .-|.+..+|+++++.. |... .
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpL--e 92 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPL--E 92 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCcee--E
Confidence 466777777766544444443 222222 222222 46666666555433 2467888999999844 4432 2
Q ss_pred EecCCCCHHHHHHHHHH
Q 023747 237 KVSARSSSKNIAAFIKE 253 (278)
Q Consensus 237 ~~~g~~~~~~l~~~i~~ 253 (278)
+-.|-.+.++|..-|.+
T Consensus 93 vitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 93 VITGFVTADELASSIEK 109 (506)
T ss_pred EeeccccHHHHHHHHHH
Confidence 55677778888775543
No 484
>PRK10853 putative reductase; Provisional
Probab=22.45 E-value=1.1e+02 Score=22.48 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=22.8
Q ss_pred EEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC
Q 023747 170 LLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN 211 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~ 211 (278)
+..|+.+.|+.|+.....+++- ++.+-.+|.-+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ--------GIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc--------CCCcEEeehccC
Confidence 4567889999999876665543 355556665444
No 485
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=22.31 E-value=1.3e+02 Score=26.87 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=43.4
Q ss_pred ChhHHHH----HHHHHHHHHHhcCCC-ceEEEEEeCCCC---CC--CCCCCc-CC-CeEEEEeCCCccCceEe-cCCCCH
Q 023747 178 CVTCETT----SKQIEKLAKHFKGLD-NLVIAKIDASAN---EH--PKLQVE-EY-PTLLFYPAGDKANPIKV-SARSSS 244 (278)
Q Consensus 178 c~~c~~~----~~~~~~~a~~~~~~~-~~~~~~vd~~~~---~~--~~~~i~-~~-Ptl~~f~~g~~~~~~~~-~g~~~~ 244 (278)
||.|-.. .....++-+.+.... .++++-+-|--| +. +.+++. +- -...+|++|+.++ +. ..+.-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~--k~~~ee~~v 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVK--KVIPEEEIV 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEE--EE-CSTCHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEE--ecCCHHHHH
Confidence 5555433 334444444444332 689999999887 33 467776 33 3488888888764 45 556666
Q ss_pred HHHHHHHHHH
Q 023747 245 KNIAAFIKEQ 254 (278)
Q Consensus 245 ~~l~~~i~~~ 254 (278)
+.|.+-|+++
T Consensus 349 d~L~~~I~~~ 358 (359)
T PF04551_consen 349 DELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7787777765
No 486
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=22.02 E-value=1.6e+02 Score=20.61 Aligned_cols=68 Identities=10% Similarity=0.240 Sum_probs=42.9
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCC--ceEEEEEeCCCCCCCCCCCcCCCeEEEEe--CCCccCceEecCCCCHHHHHHHH
Q 023747 176 PWCVTCETTSKQIEKLAKHFKGLD--NLVIAKIDASANEHPKLQVEEYPTLLFYP--AGDKANPIKVSARSSSKNIAAFI 251 (278)
Q Consensus 176 ~~c~~c~~~~~~~~~~a~~~~~~~--~~~~~~vd~~~~~~~~~~i~~~Ptl~~f~--~g~~~~~~~~~g~~~~~~l~~~i 251 (278)
..|..+- .+.++++.+.+.... .+.+....|-.. =..-|++++|+ +| .+-+..+.+++...|
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~clG~------c~~gp~vvvyP~~~g------~wy~~v~p~~v~~Iv 79 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVSHVGG------HKFAGNVIIYPKGDG------IWYGRVTPEHVPPIV 79 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCCcCCc------cCcCCEEEEEeCCCe------eEEeecCHHHHHHHH
Confidence 3465543 356777777765321 354444443321 23459999999 54 345578899999999
Q ss_pred HHHhcc
Q 023747 252 KEQLKE 257 (278)
Q Consensus 252 ~~~~~~ 257 (278)
.+++..
T Consensus 80 ~~hl~~ 85 (97)
T cd03062 80 DRLILG 85 (97)
T ss_pred HHHhcC
Confidence 999875
No 487
>PRK09301 circadian clock protein KaiB; Provisional
Probab=21.87 E-value=2.8e+02 Score=19.94 Aligned_cols=74 Identities=14% Similarity=-0.015 Sum_probs=49.6
Q ss_pred CcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCH
Q 023747 167 KDVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 167 ~~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~ 244 (278)
.+++=.|.+..-+........+.++-...... .+.+--||+.++ +. ..++|-.+||++=--.... -+..|+.+.
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~---rriiGDlsd 81 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILPPPV---RKIIGDLSD 81 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCc---ceeeccccc
Confidence 45566677766667777666777776655443 588888999888 55 5789999999774433221 156777553
No 488
>PRK10026 arsenate reductase; Provisional
Probab=21.77 E-value=1.3e+02 Score=23.03 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=17.1
Q ss_pred EEEEECCCChhHHHHHHHHHHH
Q 023747 170 LLEVYTPWCVTCETTSKQIEKL 191 (278)
Q Consensus 170 ~v~f~~~~c~~c~~~~~~~~~~ 191 (278)
+.+|+.|.|+.|+.....+++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 4578889999999987666644
No 489
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.29 E-value=84 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=22.7
Q ss_pred EEEEEECCCChhHHHHHHHHHHHHHHh
Q 023747 169 VLLEVYTPWCVTCETTSKQIEKLAKHF 195 (278)
Q Consensus 169 ~~v~f~~~~c~~c~~~~~~~~~~a~~~ 195 (278)
.+-+.+.|-|+.|.-+.|.+++++..-
T Consensus 3 ~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 3 TLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred eeEEecCcchhhhhCccHHHHHHHhcC
Confidence 466788999999999999999888774
No 490
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=21.21 E-value=2.9e+02 Score=19.15 Aligned_cols=73 Identities=15% Similarity=-0.018 Sum_probs=47.9
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCcCCCeEEEEeCCCccCceEecCCCCH
Q 023747 168 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVEEYPTLLFYPAGDKANPIKVSARSSS 244 (278)
Q Consensus 168 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~~~Ptl~~f~~g~~~~~~~~~g~~~~ 244 (278)
+++=.|.+..-+.+......+.++-+..... .+.+--||+.++ +. ..+++-.+||++=--.... -+..|+.+.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~---rriiGdls~ 78 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKILPPPV---RKIIGDLSD 78 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCc---ceeeccccc
Confidence 3444566666666766666677776655443 588888999888 66 5789999999874433221 156676543
No 491
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=2.5e+02 Score=22.25 Aligned_cols=74 Identities=15% Similarity=0.037 Sum_probs=39.2
Q ss_pred CceeeeeeeecCCceEEEEEeCc--cchHHHHHHHHHHHHHhcC-ceEEEEEeCCCcccchhHHHHcCCCCCCceEEEEe
Q 023747 26 TSLELLKVSQIDTLDMVYVFAKA--DDLKSLLEPLEDIARNFKG-KIMFTAVDIADEDLAKPFLTLFGLEESKNTVVTAF 102 (278)
Q Consensus 26 ~~~~~~~~~~~~~~~~v~F~~~~--~~c~~~~~~~~~la~~~~~-~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl~~~~ 102 (278)
+..--.+.+..+++++++||... +.|.+-.=.|+.=+.+++. --.+.-+..+...-...+..++++ |.- ++-
T Consensus 79 g~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnl----PYh-LLS 153 (211)
T KOG0855|consen 79 GKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNL----PYH-LLS 153 (211)
T ss_pred CCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccC----Cee-eec
Confidence 34444566677778888888654 7787655555555555442 123333333333212455555553 655 444
Q ss_pred cC
Q 023747 103 DN 104 (278)
Q Consensus 103 ~~ 104 (278)
+.
T Consensus 154 Dp 155 (211)
T KOG0855|consen 154 DP 155 (211)
T ss_pred Cc
Confidence 43
No 492
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=1.7e+02 Score=20.95 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=30.0
Q ss_pred eEEEEEe--Cc-cchHHHHHHHHHHHHHhcCceEEEEEeCCCcccchhHHHHcCCCCCCceE
Q 023747 40 DMVYVFA--KA-DDLKSLLEPLEDIARNFKGKIMFTAVDIADEDLAKPFLTLFGLEESKNTV 98 (278)
Q Consensus 40 ~~v~F~~--~~-~~c~~~~~~~~~la~~~~~~v~f~~vd~~~~~~~~~l~~~~~i~~~~Ptl 98 (278)
-+++|.. |. +.| -+.....++-..+.. +.|+.+|.-.+ +++.+...--+-+||+
T Consensus 16 ~VvLFMKGtp~~P~C-GFS~~~vqiL~~~g~-v~~~~vnVL~d---~eiR~~lk~~s~WPT~ 72 (105)
T COG0278 16 PVVLFMKGTPEFPQC-GFSAQAVQILSACGV-VDFAYVDVLQD---PEIRQGLKEYSNWPTF 72 (105)
T ss_pred ceEEEecCCCCCCCC-CccHHHHHHHHHcCC-cceeEEeeccC---HHHHhccHhhcCCCCC
Confidence 3556664 33 555 233333333333333 89999999988 7777654433223666
No 493
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.06 E-value=1.2e+02 Score=23.06 Aligned_cols=73 Identities=14% Similarity=0.289 Sum_probs=45.5
Q ss_pred cEEEEEECCCChhHHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-CC-CCCCCc----CCCeEEEEeCCCccCceEecCC
Q 023747 168 DVLLEVYTPWCVTCETTSKQIEKLAKHFKGLDNLVIAKIDASAN-EH-PKLQVE----EYPTLLFYPAGDKANPIKVSAR 241 (278)
Q Consensus 168 ~~~v~f~~~~c~~c~~~~~~~~~~a~~~~~~~~~~~~~vd~~~~-~~-~~~~i~----~~Ptl~~f~~g~~~~~~~~~g~ 241 (278)
.-++.+++|.|+=|......++. + .+.+..+..++- .+ .+++|. +==|.++ +|. ..+|.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~---Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy-----~vEGH 90 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----N---GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY-----YVEGH 90 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----C---CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE-----EEecc
Confidence 35788999999999887555541 1 355555555444 33 356553 2223332 343 45788
Q ss_pred CCHHHHHHHHHHHh
Q 023747 242 SSSKNIAAFIKEQL 255 (278)
Q Consensus 242 ~~~~~l~~~i~~~~ 255 (278)
...+++.+++++.-
T Consensus 91 VPa~aI~~ll~~~p 104 (149)
T COG3019 91 VPAEAIARLLAEKP 104 (149)
T ss_pred CCHHHHHHHHhCCC
Confidence 89999999988655
Done!