BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023748
         (278 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
           From Escherichia Coli
 pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
           From Escherichia Coli
          Length = 309

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 224 VLMVQFTLPPAMNIGTMTQLFDVAQEE---CSVLFLWTYLVAALALTGWSMV 272
           +L++  +LPP + +  +TQL   AQ++   C V      L AALA+    +V
Sbjct: 133 ILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELV 184


>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
           Phosphofructokinase-2 From Escherichia Coli
 pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
           Phosphofructokinase-2 From Escherichia Coli
 pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Fructose-6-Phosphate
 pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Fructose-6-Phosphate
 pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Fructose-6-Phosphate
 pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Fructose-6-Phosphate
 pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Potassium
 pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Potassium
 pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Cesium And Atp
 pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Cesium And Atp
 pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Substrates And Products
 pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Substrates And Products
 pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Substrates And Products
 pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
           Escherichia Coli In Complex With Substrates And Products
          Length = 309

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 224 VLMVQFTLPPAMNIGTMTQLFDVAQEE---CSVLFLWTYLVAALALTGWSMV 272
           +L++  +LPP + +  +TQL   AQ++   C V      L AALA+    +V
Sbjct: 133 ILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGEALSAALAIGNIELV 184


>pdb|3TYW|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
           A3(2)
 pdb|3TYW|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
           A3(2)
 pdb|3TYW|C Chain C, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
           A3(2)
 pdb|3TYW|D Chain D, Crystal Structure Of Cyp105n1 From Streptomyces Coelicolor
           A3(2)
 pdb|4FXB|A Chain A, Crystal Structure Of Cyp105n1 From Streptomyces
           Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
           Siderophore Biosynthetic Pathway
 pdb|4FXB|B Chain B, Crystal Structure Of Cyp105n1 From Streptomyces
           Coelicolor: A Cytochrome P450 Oxidase In The Coelibactin
           Siderophore Biosynthetic Pathway
          Length = 417

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 136 LRNLIIGDSAPLRVIQDSIEILGDGTIPC----ITLILGGN 172
           LR L + DS PLRV  + IE+ G  T+P     I L+ G N
Sbjct: 290 LRVLSVADSIPLRVAAEDIELSG-RTVPADDGVIALLAGAN 329


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,985,930
Number of Sequences: 62578
Number of extensions: 236714
Number of successful extensions: 713
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 6
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)