Query 023748
Match_columns 278
No_of_seqs 201 out of 963
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 2.2E-56 4.8E-61 417.5 10.3 255 1-278 149-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 1.1E-28 2.4E-33 234.3 19.6 161 99-270 224-385 (385)
3 TIGR00946 2a69 he Auxin Efflux 99.9 4E-21 8.6E-26 179.8 18.5 146 110-273 173-320 (321)
4 PRK09903 putative transporter 99.8 3.6E-20 7.8E-25 173.2 18.2 140 115-273 170-310 (314)
5 COG0679 Predicted permeases [G 99.8 1.1E-17 2.3E-22 156.8 18.2 147 112-275 161-309 (311)
6 TIGR00841 bass bile acid trans 98.9 8.4E-09 1.8E-13 95.8 10.5 109 162-276 14-123 (286)
7 PF01758 SBF: Sodium Bile acid 98.3 8.6E-06 1.9E-10 70.9 11.5 109 162-275 4-113 (187)
8 TIGR00832 acr3 arsenical-resis 98.2 7E-05 1.5E-09 71.2 16.0 141 119-275 11-158 (328)
9 COG0385 Predicted Na+-dependen 98.0 0.0001 2.2E-09 69.7 12.1 111 159-275 41-152 (319)
10 PF13593 DUF4137: SBF-like CPA 97.6 0.0011 2.4E-08 62.6 13.0 144 119-274 2-147 (313)
11 COG0798 ACR3 Arsenite efflux p 96.0 0.38 8.1E-06 46.1 15.6 139 120-276 20-167 (342)
12 PF04172 LrgB: LrgB-like famil 87.0 22 0.00048 32.1 13.2 135 116-269 19-154 (215)
13 PRK10711 hypothetical protein; 86.2 26 0.00057 32.0 13.4 134 116-268 30-164 (231)
14 COG1346 LrgB Putative effector 83.6 27 0.00058 31.9 12.1 137 115-270 31-168 (230)
15 KOG2718 Na+-bile acid cotransp 81.3 1.6 3.5E-05 42.5 3.6 107 164-276 121-229 (371)
16 PRK04288 antiholin-like protei 81.2 44 0.00095 30.6 13.5 134 116-268 35-169 (232)
17 TIGR00659 conserved hypothetic 75.9 63 0.0014 29.4 13.6 133 116-267 29-162 (226)
18 PRK03562 glutathione-regulated 59.2 2.2E+02 0.0049 29.4 13.7 120 148-273 260-379 (621)
19 COG2855 Predicted membrane pro 57.1 94 0.002 30.0 9.6 139 118-276 38-178 (334)
20 PRK03659 glutathione-regulated 47.8 3.3E+02 0.0072 28.0 14.7 120 148-273 257-376 (601)
21 PF09925 DUF2157: Predicted me 46.7 1.6E+02 0.0036 24.2 8.5 44 217-260 86-129 (145)
22 PF03601 Cons_hypoth698: Conse 42.2 3E+02 0.0066 26.0 11.5 50 116-175 25-75 (305)
23 COG3329 Predicted permease [Ge 39.1 67 0.0015 30.9 5.4 60 110-177 208-268 (372)
24 KOG1397 Ca2+/H+ antiporter VCX 38.5 2.8E+02 0.006 27.7 9.6 127 117-247 75-221 (441)
25 PRK03562 glutathione-regulated 33.9 5.5E+02 0.012 26.6 13.1 115 110-243 21-138 (621)
26 PRK11598 putative metal depend 28.5 6.6E+02 0.014 25.8 11.6 24 238-261 102-125 (545)
27 KOG4821 Predicted Na+-dependen 27.1 2E+02 0.0044 26.4 6.2 79 182-266 81-160 (287)
28 TIGR02978 phageshock_pspC phag 26.6 2.1E+02 0.0045 23.5 5.8 40 237-276 17-56 (121)
29 PRK12460 2-keto-3-deoxyglucona 26.6 1.3E+02 0.0028 28.8 5.1 80 164-251 53-135 (312)
30 PRK10697 DNA-binding transcrip 24.8 2E+02 0.0043 23.6 5.3 41 237-277 22-62 (118)
31 PRK12585 putative monovalent c 24.0 5.3E+02 0.011 23.1 9.0 32 184-216 68-99 (197)
32 PF03812 KdgT: 2-keto-3-deoxyg 23.5 2.3E+02 0.0049 27.2 6.1 83 164-253 53-142 (314)
33 COG1823 Predicted Na+/dicarbox 20.7 8.5E+02 0.018 24.3 12.2 56 192-247 76-134 (458)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.2e-56 Score=417.51 Aligned_cols=255 Identities=42% Similarity=0.790 Sum_probs=207.7
Q ss_pred CchhhhhhhhhhHhhhheeeeeeccchhhHH-hhhhcCCCCcCCcccccccchhhhhh-hccCC-CCCcccchhhcccCC
Q 023748 1 MYLLANLMQLGGFFIWSYSYQLIKQSSVRYK-ALAQAAEPEEVPKEVNKDFDANAQTQ-LLRGT-TDDQEDVSVLVASTK 77 (278)
Q Consensus 1 ~~y~S~smavg~i~iwtyvy~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~ 77 (278)
|.|+|||||+|++++|||+|||+.+++.... .+++. .++.. .++-+ .-.+. +|+.+|+++++
T Consensus 149 i~Y~sf~~~lg~il~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~----------~~~~~~~s~e~~~~~~~k~~ll~---- 213 (408)
T KOG2722|consen 149 ISYVSFSQQLGQILRWTYVYRMLLPPNLELMSALKES-PVEAL----------LESVPQPSVESDEDSTCKTLLLA---- 213 (408)
T ss_pred hhHHHHHHHhhhhEEEEEEeeeecCCchhhhhcCChh-hhhhh----------hhccCCCCccccccccccccccc----
Confidence 5799999999999999999999999964332 22221 11111 00000 00000 11113333331
Q ss_pred CCCCCccccccCcccchhhhhhhhhhhhHHHHHHH-HHHhhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHH
Q 023748 78 SSSDPECQIIVPQASHLQTRKESFWKRSLEFLHQL-LEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEI 156 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lk~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~ 156 (278)
+.+|+. .+...++++.++|.+....+. +|++++||++|+++|+++|++||+|+++|++++|+++++|++.+
T Consensus 214 ~~en~~--------~~~~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~l 285 (408)
T KOG2722|consen 214 SKENRN--------NQVVGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTL 285 (408)
T ss_pred ccccCC--------CceeeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHH
Confidence 111111 111124456666666655555 99999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHhhcchHHH
Q 023748 157 LGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLMVQFTLPPAM 235 (278)
Q Consensus 157 lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~-~dpl~~~Vlllq~a~P~A~ 235 (278)
+|++++||+++++|+||.+|++++..+.+++++++++||+++|+++++++..++|+|+++ +||+|++|+++|+++|||+
T Consensus 286 lG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi 365 (408)
T KOG2722|consen 286 LGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAI 365 (408)
T ss_pred hccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchh
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 023748 236 NIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWILS 278 (278)
Q Consensus 236 ~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~l~ 278 (278)
|++++||++|.+|+|||++++|+|+++.+++++|+++|+|++.
T Consensus 366 ~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 366 NLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVFFLWLVV 408 (408)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999973
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.96 E-value=1.1e-28 Score=234.29 Aligned_cols=161 Identities=31% Similarity=0.468 Sum_probs=140.2
Q ss_pred hhhhhhhHHHHHHH-HHHhhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhccccc
Q 023748 99 ESFWKRSLEFLHQL-LEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL 177 (278)
Q Consensus 99 ~~~~~~~~~~~~~~-lk~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~ 177 (278)
.+.+++.++...+. +|.++||+++|.++|++++++|+.+++++. .++.++++++|++++|++|+++|++|++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~ 298 (385)
T PF03547_consen 224 QKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGP 298 (385)
T ss_pred hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34444444444444 677899999999999999999987765444 799999999999999999999999999887
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHH
Q 023748 178 RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLW 257 (278)
Q Consensus 178 ~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~ 257 (278)
++...+.+.....+++|++++|++++++++++ ..|+....++++|+++|+|++..++|++||.+++++|..++|
T Consensus 299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~------~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~ 372 (385)
T PF03547_consen 299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLL------GLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFW 372 (385)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66677778878889999999999999998854 247778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023748 258 TYLVAALALTGWS 270 (278)
Q Consensus 258 s~l~sivtl~lw~ 270 (278)
||+++++++|+|+
T Consensus 373 ~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 373 STLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999995
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.87 E-value=4e-21 Score=179.80 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=128.1
Q ss_pred HHHHHH-hhChhHHHHHHHHHHHhhHhHhHhhhcCCCch-hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHH
Q 023748 110 HQLLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLII 187 (278)
Q Consensus 110 ~~~lk~-l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i 187 (278)
++.+|+ +.||+++|.++|+++..+++ ++ .++.++++++|++++|++|+.+|..+... +.+.+++..
T Consensus 173 ~~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~--~~~~~~~~~ 240 (321)
T TIGR00946 173 IFVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILSGATTPMALFSLGLALSPR--KIKLGVRDA 240 (321)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHHHHHHHHHHHHHhhChh--hhccChHHH
Confidence 344555 47999999999999999873 34 79999999999999999999999999753 334456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 023748 188 IAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 267 (278)
Q Consensus 188 ~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~ 267 (278)
...+++|+++.|++++++... ++.|+..+.++++++|+|+|.+..++|++||.|++++|..+++||++|++|+|
T Consensus 241 ~~~~~~klil~P~i~~~~~~~------~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 241 ILALIVRFLVQPAVMAGISKL------IGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999887753 34578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 023748 268 GWSMVY 273 (278)
Q Consensus 268 lw~~l~ 273 (278)
+|+.++
T Consensus 315 ~~~~l~ 320 (321)
T TIGR00946 315 LFIILL 320 (321)
T ss_pred HHHHHh
Confidence 999864
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.85 E-value=3.6e-20 Score=173.23 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=122.4
Q ss_pred HhhChhHHHHHHHHHHHhhHhHhHhhhcCCCch-hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHH
Q 023748 115 ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCV 193 (278)
Q Consensus 115 ~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~v 193 (278)
-+.||+++|.++|+++...+ .++ .++.++++++|++++|++|+.+|++|++... +.+ +..+...+.
T Consensus 170 ~~~nP~iia~~~gl~~~l~~----------i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~--~~~-~~~~~~~~~ 236 (314)
T PRK09903 170 AAKEPVVWAPVLATILVLVG----------VKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF--EFS-AEIAYNTFL 236 (314)
T ss_pred HHhchHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--ccc-HHHHHHHHH
Confidence 36799999999999998775 344 7999999999999999999999999998532 222 456678889
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 194 RYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 273 (278)
Q Consensus 194 RlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~ 273 (278)
|+++.|++.+++... ++.|+..+.++++++|+|+|.+..++|++||.|++.++..++.||++|++|+|+|+.++
T Consensus 237 Kli~~P~i~~~~~~~------~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 237 KLILMPLALLLVGMA------CHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHHHH------cCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876653 34578899999999999999999999999999999999999999999999999999874
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=156.81 Aligned_cols=147 Identities=21% Similarity=0.344 Sum_probs=127.7
Q ss_pred HHHH-hhChhHHHHHHHHHHHhhHhHhHhhhcCCCch-hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHH
Q 023748 112 LLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIA 189 (278)
Q Consensus 112 ~lk~-l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ 189 (278)
.+|+ +.||+++|.++|+++...+. ++ .++.++++++|++++|++|+.+|.+|++ .+..+.+.+.++.
T Consensus 161 ~~~~~~~nP~i~a~i~g~~~~~~~i----------~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~ 229 (311)
T COG0679 161 VLKKLLTNPLIIALILGLLLNLLGI----------SLPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILI 229 (311)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHH
Confidence 3444 57999999999999998763 33 6999999999999999999999999998 2345556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 023748 190 VVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGW 269 (278)
Q Consensus 190 ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw 269 (278)
....|+++.|++.+++.++ ++.++....+++++.|+|+|.|..++|++||.+++.++.+++.||++|++|+|.|
T Consensus 230 ~~~~kll~~Pl~~~~~~~~------~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~ 303 (311)
T COG0679 230 ALSLKLLLAPLVALLVAKL------LGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLL 303 (311)
T ss_pred HHHHHHHHHHHHHHHHHHH------cCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999998764 3346667799999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 023748 270 SMVYMW 275 (278)
Q Consensus 270 ~~l~~~ 275 (278)
...+.+
T Consensus 304 ~~~l~~ 309 (311)
T COG0679 304 ILLLLR 309 (311)
T ss_pred HHHHhc
Confidence 888765
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=98.90 E-value=8.4e-09 Score=95.82 Aligned_cols=109 Identities=16% Similarity=0.134 Sum_probs=93.2
Q ss_pred hHHHHHHHhHhccccc-ccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH
Q 023748 162 IPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 240 (278)
Q Consensus 162 iPl~llilG~~L~~~~-~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i 240 (278)
...+|+.+|.++.... ++...+++.+....+.|++++|++++++.+. ++.||.....+++.+++|+|.+..++
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~------~~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKV------FKLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHheeeCCCchHHHHH
Confidence 6678889999998632 2222345677778889999999999998764 34688999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 241 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWI 276 (278)
Q Consensus 241 a~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~ 276 (278)
++++|+|.+.++..+..++++|++++|+|+.++...
T Consensus 88 t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~ 123 (286)
T TIGR00841 88 TYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKM 123 (286)
T ss_pred HHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988653
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=98.30 E-value=8.6e-06 Score=70.90 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=83.0
Q ss_pred hHHHHHHHhHhcccc-cccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH
Q 023748 162 IPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM 240 (278)
Q Consensus 162 iPl~llilG~~L~~~-~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i 240 (278)
+-+.|+.+|.++... .++...+++.+....+..++++|++++++.+.. ++.+|.+..-+++.+++|.+.....+
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 345677777777643 223333467788888999999999999998432 56788899999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 241 TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 275 (278)
Q Consensus 241 a~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~ 275 (278)
+.+.|+|...+.....++++++++.+|+|..++..
T Consensus 79 t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~ 113 (187)
T PF01758_consen 79 TYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG 113 (187)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCcccccceeeHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999988853
No 8
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=98.19 E-value=7e-05 Score=71.15 Aligned_cols=141 Identities=15% Similarity=0.030 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhH------HHHHHHhHhcccc-cccCCCChhHHHHHH
Q 023748 119 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIP------CITLILGGNLIQG-LRSSTLKPLIIIAVV 191 (278)
Q Consensus 119 P~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiP------l~llilG~~L~~~-~~~~~~~~~~i~~ii 191 (278)
..+++.++|++++..-+ ......... .+.....| .+|+.+|.++... .++..-++|.+....
T Consensus 11 ~~~~~~i~~~~~g~~~P---------~~~~~~~~~--~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~ 79 (328)
T TIGR00832 11 WIFLAIAAGVGLGVLFP---------SVFQALAAL--EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSL 79 (328)
T ss_pred HHHHHHHHHHHHHHhcc---------ccHHHHHHH--HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHH
Confidence 34667777888876542 111122111 12334445 3566777777642 233334567888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 023748 192 CVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSM 271 (278)
Q Consensus 192 ~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~ 271 (278)
+.-++++|++++++.+.. ++.+|.+..=+++.+++|.+..+-.++.+.++|...+-.....+++++++.+|.+..
T Consensus 80 ~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ 154 (328)
T TIGR00832 80 FINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAW 154 (328)
T ss_pred HHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998753 356778899999999999999999999999999999988889999999999999988
Q ss_pred HHHH
Q 023748 272 VYMW 275 (278)
Q Consensus 272 l~~~ 275 (278)
+|..
T Consensus 155 ll~~ 158 (328)
T TIGR00832 155 LLLG 158 (328)
T ss_pred HHHh
Confidence 7764
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.97 E-value=0.0001 Score=69.75 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=91.8
Q ss_pred cchhHHHHHHHhHhcccc-cccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHH
Q 023748 159 DGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 237 (278)
Q Consensus 159 ~aaiPl~llilG~~L~~~-~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~ 237 (278)
...+-++|+..|..|... .+..-.+|+..+.+.+.-++++|++++++.+. ++.||....=+++..++|.+..+
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~------~~l~~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKL------FPLPPELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHhHHheeeCCCchhH
Confidence 344556777778887753 23344467788889999999999999999874 45688788888999999999999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 238 GTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 275 (278)
Q Consensus 238 ~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~ 275 (278)
-.++.++++|...+=.....+++++++..|+|+.+|+.
T Consensus 115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999888888889999999999999998763
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.60 E-value=0.0011 Score=62.57 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccc-cccCCCChhHHHHHHHHHHHH
Q 023748 119 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIA 197 (278)
Q Consensus 119 P~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~-~~~~~~~~~~i~~ii~vRlil 197 (278)
+-+++.+++++++..-|- .+ .....+.. +......+.++.++-|.+|... .++...++|....+...-+++
T Consensus 2 ~fl~~l~~ai~la~~~P~----~g--~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl 73 (313)
T PF13593_consen 2 WFLLGLLLAILLAYLFPA----PG--AAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVL 73 (313)
T ss_pred chHHHHHHHHHHHHHcCc----cc--ccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 345666777776654321 01 11112210 2333444888888999888753 233344567777788899999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHH-HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 198 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIG-TMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 274 (278)
Q Consensus 198 lP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~-~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~ 274 (278)
.|++++++...... + .++.+..=+++.+++|+...++ .++++.|+|+..+-.....+.++.++..|+|+.+++
T Consensus 74 ~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 74 FPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 99999999876421 1 3666888899999999987665 699999999988888888899999999999999887
No 11
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.38 Score=46.12 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHH--HhccchhHHHHHHHhHh---ccccc----ccCCCChhHHHHH
Q 023748 120 PTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIE--ILGDGTIPCITLILGGN---LIQGL----RSSTLKPLIIIAV 190 (278)
Q Consensus 120 ~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~--~lG~aaiPl~llilG~~---L~~~~----~~~~~~~~~i~~i 190 (278)
..++.++|+.+|..-+ -+.+.++ ..|+..+|.+...+=+. +.+.. ++-.-++|.....
T Consensus 20 v~l~i~~Gi~lG~~~p-------------~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~ls 86 (342)
T COG0798 20 VFLAIAIGILLGVHFP-------------GLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILS 86 (342)
T ss_pred HHHHHHHHHHHHhccc-------------chhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHH
Confidence 5778888888875532 1333444 56677788766443322 12211 1122235677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023748 191 VCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 270 (278)
Q Consensus 191 i~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~ 270 (278)
.+.-.++-|++.+.+.+.. +++.|.++.=+++....|+-..+..-+++-++|.+.+++.+-+..++.++..+.|.
T Consensus 87 L~~Nwii~P~lm~~la~~f-----l~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 87 LFVNWIIGPLLMFALAWFF-----LPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998864 46677888888899999999888999999999999999999999999999999999
Q ss_pred HHHHHH
Q 023748 271 MVYMWI 276 (278)
Q Consensus 271 ~l~~~~ 276 (278)
.+|+..
T Consensus 162 ~~~l~v 167 (342)
T COG0798 162 KFFLGV 167 (342)
T ss_pred HHHHhh
Confidence 888764
No 12
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=86.96 E-value=22 Score=32.07 Aligned_cols=135 Identities=21% Similarity=0.165 Sum_probs=77.0
Q ss_pred hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748 116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 195 (278)
Q Consensus 116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl 195 (278)
++||.+++.++=+.+-..- +.|..--.+.-+++...--|. +..+|--|++..+.-+-+++.++..+++=-
T Consensus 19 ~l~P~l~a~~~ii~~L~~~---------~i~y~~Y~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~ 88 (215)
T PF04172_consen 19 FLNPLLIAIVLIIAFLLLT---------GIPYEDYMQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGS 88 (215)
T ss_pred cccHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999887755543332 256544445555554444443 568888888754333333444444444333
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh-cchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 023748 196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQF-TLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGW 269 (278)
Q Consensus 196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~-a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw 269 (278)
++--...+.+.+ .+| .|+.....+.--+ .+|-|+.+ ++..|++.+..+..+..|=++-.+-=|..
T Consensus 89 ~~~~~~~~~l~~---~lg---l~~~~~~Sl~pkSVTtpiAi~i---s~~iGG~~sLta~~VvitGi~Ga~~g~~l 154 (215)
T PF04172_consen 89 LVSIFSAVLLAR---LLG---LSPEIILSLAPKSVTTPIAIEI---SEQIGGIPSLTAVFVVITGILGAVLGPPL 154 (215)
T ss_pred HHHHHHHHHHHH---HHC---cCHHHHHHHHHHHhhHHHHHHH---HHHhCChHHHHHHHHHHHhhHHHHhHHHH
Confidence 333333333333 224 3554444444443 46777664 88999999999988888866655544433
No 13
>PRK10711 hypothetical protein; Provisional
Probab=86.22 E-value=26 Score=31.98 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=79.6
Q ss_pred hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748 116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 195 (278)
Q Consensus 116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl 195 (278)
++||.+++.++-+.+-..- +.|..--++.-+.+...--|- +..++.-|++..+.-+-.++.+...+++=-
T Consensus 30 ~l~Pll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~I~~~~~vG~ 99 (231)
T PRK10711 30 LLNPLLVAMVVIIPFLLLT---------GIPYEHYFKGSEVLNDLLQPA-VVALAFPLYEQLHQIRARWKSIISICFIGS 99 (231)
T ss_pred cccHHHHHHHHHHHHHHHh---------CCCHHHHHhccHHHHhhhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5799999987666654332 355544444545555444443 337777888754333334445554444444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 023748 196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTG 268 (278)
Q Consensus 196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~l 268 (278)
++--...+.+.+. +| .|+.....++-.+. +|-|+.+ ++..|+.++..+..+..|=++-.+--|.
T Consensus 100 ~v~i~s~~~l~~~---lg---~~~~~~~Sl~pkSVTtPIAm~i---s~~iGG~~sLta~~ViitGi~Ga~~g~~ 164 (231)
T PRK10711 100 VVAMVTGTAVALW---MG---ATPEIAASILPKSVTTPIAMAV---GGSIGGIPAISAVCVIFVGILGAVFGHT 164 (231)
T ss_pred HHHHHHHHHHHHH---HC---cCHHHHHHHhhhhhhHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444442 23 36656666555554 7878765 7999999999999888886665554433
No 14
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=83.63 E-value=27 Score=31.94 Aligned_cols=137 Identities=17% Similarity=0.083 Sum_probs=76.1
Q ss_pred HhhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHH
Q 023748 115 ELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVR 194 (278)
Q Consensus 115 ~l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vR 194 (278)
.++||..++.++.+.+-..- +.|..-=.+.-+.+-..--| ++..++.=|++..+.-+-.|+.++..+++=
T Consensus 31 ~~l~PlLv~~~~li~~L~~~---------~i~Y~~Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vG 100 (230)
T COG1346 31 PFLNPLLVATVLLIAFLLLF---------GISYEDYMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVG 100 (230)
T ss_pred cccchHHHHHHHHHHHHHHc---------CCCHHHHhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999988777665432 23332222222222222234 455777778875444444455555544444
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 023748 195 YIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWS 270 (278)
Q Consensus 195 lillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~ 270 (278)
-++-=..++.+.+ . ++.|+.....++=.+. +|-||-+ ++..|+-++..+..+..+=++-.+.-|..+
T Consensus 101 s~~ai~s~~llak---~---~g~~~~~~~Sl~PkSvTTpiAm~v---s~~iGGip~ltav~Vi~tGi~Gavlg~~ll 168 (230)
T COG1346 101 SVVAIISGVLLAK---L---FGLSPELILSLLPKSVTTPIAMEV---SESIGGIPALTAVFVILTGILGAVLGPLLL 168 (230)
T ss_pred HHHHHHHHHHHHH---H---hCCCHHHHHHhcccccccHHHHHH---HHhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 2 3346655555555544 6777654 788888888888888888666555444433
No 15
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=81.32 E-value=1.6 Score=42.49 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=69.3
Q ss_pred HHHHHHhHhcccccccCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHH
Q 023748 164 CITLILGGNLIQGLRSST-LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQ 242 (278)
Q Consensus 164 l~llilG~~L~~~~~~~~-~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~ 242 (278)
..++.+|.++.-...... ..+..+....+.+++++|+.++.+.+.+ .+|.+. . ..+++..+.+|+........
T Consensus 121 ~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~----~lP~~~-~-ag~~Lvtc~~p~g~~~~~~~ 194 (371)
T KOG2718|consen 121 SNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVL----LLPAAL-A-AGLLLVTCVSPGGGGNYLTS 194 (371)
T ss_pred HHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHh----hCCccc-c-ceeEEEEeccCCcchhhhee
Confidence 445666666653222211 2223444455669999999999976432 244332 1 45667777888877777777
Q ss_pred Hc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 243 LF-DVAQEECSVLFLWTYLVAALALTGWSMVYMWI 276 (278)
Q Consensus 243 ~~-g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~ 276 (278)
.+ +++....-.....+++.+++.+|+|...+...
T Consensus 195 ~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~ 229 (371)
T KOG2718|consen 195 KRLPGDVTLSILMTTISTVLAVILTPLLSILLGRA 229 (371)
T ss_pred ecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 77 66665566666667999999999999887543
No 16
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=81.23 E-value=44 Score=30.59 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=77.1
Q ss_pred hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748 116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 195 (278)
Q Consensus 116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl 195 (278)
++||.+++.++-+.+-..- +.|..--++.-+.+...--|- +..++--|++..+.-+-.++.+...+++=-
T Consensus 35 ~lnPll~s~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgPA-tVALAvPLY~q~~~lk~~~~~Il~~~~vG~ 104 (232)
T PRK04288 35 LFTPLFVAMVLGIAFLKLT---------GISYEEYNIGGDIISFFLEPA-TIAFAIPLYKKRDVLKKYWWQILGGIVVGS 104 (232)
T ss_pred chhHHHHHHHHHHHHHHHh---------CCCHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4799988887766654332 355543344444443333332 336677788754333333444444444444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 023748 196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTG 268 (278)
Q Consensus 196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~l 268 (278)
++--...+.+.+. ++.|+.....++-.+. +|-|+.+ ++..|+.++..+..+..+=++-.+--|.
T Consensus 105 ~~~i~s~~~la~~------lgl~~~~~~Sl~pKSVTtPIAm~i---s~~iGG~psLtA~~ViitGi~Gai~g~~ 169 (232)
T PRK04288 105 VCSVLIIYLVAKL------IQLDNAVMASMLPQAATTAIALPV---SAGIGGIKEITSFAVIFNAVIIYALGAK 169 (232)
T ss_pred HHHHHHHHHHHHH------HCcCHHHHHHHhhHhhhHHHHHHH---HHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444432 3346656555555554 6777765 8999999999999988887666554443
No 17
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=75.87 E-value=63 Score=29.43 Aligned_cols=133 Identities=20% Similarity=0.133 Sum_probs=72.8
Q ss_pred hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHH
Q 023748 116 LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRY 195 (278)
Q Consensus 116 l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRl 195 (278)
++||.+++.++-+.+-..- +.|..--.+.-+.+...--| ++..++.-|++..+.-+-.++.+...+.+=-
T Consensus 29 ~lnPvl~~~~~ii~~L~~~---------~i~Y~~Y~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~ 98 (226)
T TIGR00659 29 YLNPLLLTPLVLVGILLLV---------GIPYESYMLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGS 98 (226)
T ss_pred cccHHHHHHHHHHHHHHHh---------CCCHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5899999988666554332 24543333444444333222 2346677777754333333344444333333
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhc-chHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 023748 196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFT-LPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALT 267 (278)
Q Consensus 196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a-~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~ 267 (278)
++--...+.+.+ .+| .|+.....+.-.+. +|-|+-+ ++..|++++..+..+..|=++-.+.-|
T Consensus 99 ~~~~~s~~~la~---~lg---~~~~i~~Sl~pkSvTtpiAm~v---s~~iGG~~sLta~~vvitGi~Ga~~g~ 162 (226)
T TIGR00659 99 VIAIISGTLLAL---LLG---LGPEIIASLLPKSVTTPIAMHV---SEMIGGIPAVTAVFVILTGLLGTVFGP 162 (226)
T ss_pred HHHHHHHHHHHH---HHC---cCHHHHHHhhhHHhhHHHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 224 35555555555544 6777654 899999999999888888666554333
No 18
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.23 E-value=2.2e+02 Score=29.44 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=70.4
Q ss_pred hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023748 148 RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMV 227 (278)
Q Consensus 148 ~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlll 227 (278)
+-+.+.++-..+.-.|+--+.+|+++.-..-.. .+..++..++..++.=++.++...+. .|. +...-...-+.+
T Consensus 260 ~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~~~~~K~~~~~~~~~~---~g~-~~~~a~~~gl~L 333 (621)
T PRK03562 260 HALESDIEPFKGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLGFLAIKIAMLWLLARP---LGV-PRKQRRWFAVLL 333 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---hCC-CHhHHHHHHHHH
Confidence 456666666677888999999999887531111 22334444444444444444444432 232 322233444455
Q ss_pred hhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 228 QFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 273 (278)
Q Consensus 228 q~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~ 273 (278)
...-..+..+..++...|.=.++....+....+++.+.-|+...++
T Consensus 334 ~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 334 GQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred hccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777777777877776445555556667778887777665554
No 19
>COG2855 Predicted membrane protein [Function unknown]
Probab=57.06 E-value=94 Score=30.00 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHHHH
Q 023748 118 APPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIA 197 (278)
Q Consensus 118 nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRlil 197 (278)
.|+++|+++|++++..+..+. -....++.=..--.......+|.+|.-..-. ..+.+.+ .+...-
T Consensus 38 ~al~lAIllGi~l~~l~~~~~----------~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~-~~G~~~v-~~~~~~--- 102 (334)
T COG2855 38 SALTLAILLGILLGILPQIPA----------QTSAGITFSSKKLLRLGIVLLGFRLTLSDIA-DVGGSGV-LIIAIT--- 102 (334)
T ss_pred hHHHHHHHHHHHHhccccchh----------hhccchhhhHHHHHHHHHHHHcceeeHHHHH-HcCccHH-HHHHHH---
Confidence 499999999999996654321 2222333334444566667777777642111 1111111 111111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH--HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 198 LPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM--TQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMW 275 (278)
Q Consensus 198 lP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i--a~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~ 275 (278)
=...+.+..+++| ++..|+ +.++++-.+.-.-=+..++ +...+.++++.+..+...+++..+.+.++=.++-+
T Consensus 103 -l~~t~~~~~~lg~--~lgld~--~~a~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~ 177 (334)
T COG2855 103 -LSSTFLFAYFLGK--LLGLDK--KLALLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPL 177 (334)
T ss_pred -HHHHHHHHHHHHH--HhCCCH--HHHHHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 1123333334444 234464 4444554444332233333 35567777887776666666666666666555544
Q ss_pred H
Q 023748 276 I 276 (278)
Q Consensus 276 ~ 276 (278)
+
T Consensus 178 l 178 (334)
T COG2855 178 L 178 (334)
T ss_pred h
Confidence 3
No 20
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.80 E-value=3.3e+02 Score=28.01 Aligned_cols=120 Identities=12% Similarity=0.050 Sum_probs=68.8
Q ss_pred hhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023748 148 RVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMV 227 (278)
Q Consensus 148 ~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlll 227 (278)
+-+.+.++-..+.-.|+--+.+|.++.-..-.. .+..++..++..+++=++.++...+ ..|. +...-...-+.+
T Consensus 257 ~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~~~~---~~g~-~~~~al~~g~~L 330 (601)
T PRK03659 257 HELEIAIEPFKGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYLLAR---LYGL-RSSERMQFAGVL 330 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHH---HhCC-CHHHHHHHHHHH
Confidence 355556666678888999999998886532111 2334444444444444444444433 2232 211122333444
Q ss_pred hhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 228 QFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVY 273 (278)
Q Consensus 228 q~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~ 273 (278)
...-.-+..+..++..+|.=.++....+....+++.+.-|+...++
T Consensus 331 ~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 331 SQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred hccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777777776555555666777777777777665543
No 21
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=46.66 E-value=1.6e+02 Score=24.19 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 023748 217 SDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYL 260 (278)
Q Consensus 217 ~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l 260 (278)
.++.....+.+..+.=.+..+.++.|.|+.+.+...-...|+-+
T Consensus 86 ~~~~~~~~l~~l~~~l~ga~ialigQ~y~~~~~~~~~~~~W~~~ 129 (145)
T PF09925_consen 86 RSPRLAEALLLLGAVLFGALIALIGQIYQTGADPWQLFLLWALL 129 (145)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhHhcCCCchHHHHHHHHHH
Confidence 35556666666666668889999999999998887888777433
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=42.18 E-value=3e+02 Score=25.96 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=38.1
Q ss_pred hhChhHHHHHHHHHHHh-hHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhccc
Q 023748 116 LLAPPTLAAIVGFIFGA-VVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQ 175 (278)
Q Consensus 116 l~nP~~iA~ilGlii~~-ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~ 175 (278)
-.+++++|.++|++++- +. + ..+.....++.-.+--.....+.+|.++.-
T Consensus 25 ~l~~~~~AillG~~i~n~~~-------~---~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~ 75 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNLFF-------G---LPARFKPGIKFSSKKLLRLGIVLLGFRLSF 75 (305)
T ss_pred CccHHHHHHHHHHHHhhhcc-------C---CcHHHHhHHHHHHHHHHHHHHHHHCccccH
Confidence 36788999999999973 32 1 115667778888888899999999999875
No 23
>COG3329 Predicted permease [General function prediction only]
Probab=39.09 E-value=67 Score=30.89 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=41.4
Q ss_pred HHHHHH-hhChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhccccc
Q 023748 110 HQLLEE-LLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL 177 (278)
Q Consensus 110 ~~~lk~-l~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~ 177 (278)
+.++|+ ++||.++..+.|+++|++...| +-.+..+..+-+=++..-+-|+.+|..-.+..
T Consensus 208 ~ell~Esflnpal~lllggl~iGlitGe~--------g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl 268 (372)
T COG3329 208 WELLQESFLNPALVLLLGGLAIGLITGEQ--------GESVLKPFFDPLFQGVLCLFLLDMGMTAGRRL 268 (372)
T ss_pred HHHHHHHHcCchHHHHHHHHHHhheeccC--------chhhhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455666 5799999999999999875221 22344444444556667778899998877643
No 24
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=38.47 E-value=2.8e+02 Score=27.68 Aligned_cols=127 Identities=9% Similarity=0.010 Sum_probs=59.6
Q ss_pred hChhHHHHHHHHHHHhhHhHhHhhhc----CCCch-hhHHHHHHHhccchhHHHHHHHhHhcccc---------------
Q 023748 117 LAPPTLAAIVGFIFGAVVWLRNLIIG----DSAPL-RVIQDSIEILGDGTIPCITLILGGNLIQG--------------- 176 (278)
Q Consensus 117 ~nP~~iA~ilGlii~~ip~lr~~~~~----~~~pL-~~i~~sl~~lG~aaiPl~llilG~~L~~~--------------- 176 (278)
+|=..-...+|++.+-..+-|..+|. .-.|| ..+.-+.+-++.-+-|- +|+-|.-.
T Consensus 75 l~~lf~f~pl~~~~h~~~~s~~~vF~lsll~iiPLA~~l~~ateqls~~tg~t----vGgllNAtfGnaiElii~ilALk 150 (441)
T KOG1397|consen 75 LNLLFPFVPLAIIAHWFTWSKGWVFLLSLLGIIPLAERLGFATEQLSAYTGPT----VGGLLNATFGNAIELIIYILALK 150 (441)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc----HHHHHhhhhccHHHHHHHHHHhh
Confidence 34444466666666655554444442 23466 34444455555444443 33333221
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCC
Q 023748 177 LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVA 247 (278)
Q Consensus 177 ~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~ 247 (278)
.++.+.--...++-+..-++++|=..+.......|........--....++..|+=....-.++-..++..
T Consensus 151 ~g~~riVq~SlLGSILsnlLLvlG~s~~~Ggi~rk~Q~Fn~~~A~v~s~lLl~a~l~~l~P~~l~~~~~~~ 221 (441)
T KOG1397|consen 151 NGKVRIVQGSLLGSILSNLLLVLGLSLFCGGIRRKDQRFNIKSAGVNSALLLLAVLGILLPTVLHYTYGGE 221 (441)
T ss_pred cCceEEEehhhHHHHHHHHHHHhhHHHhhcccccceeecccchhhHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 12223333567788888888888666654433333332221122222334444443333434444455543
No 25
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=33.92 E-value=5.5e+02 Score=26.57 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=59.9
Q ss_pred HHHHHHhhChhHHHHHH-HHHHHhhHhHhHhhhcCCCchhhH--HHHHHHhccchhHHHHHHHhHhcccccccCCCChhH
Q 023748 110 HQLLEELLAPPTLAAIV-GFIFGAVVWLRNLIIGDSAPLRVI--QDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI 186 (278)
Q Consensus 110 ~~~lk~l~nP~~iA~il-Glii~~ip~lr~~~~~~~~pL~~i--~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~ 186 (278)
..+.|++-.|++++-++ |+++| |.. +..+ .+.++.+++..+.+.|+.+|..+.-..-++ ..+.
T Consensus 21 ~~l~~rl~lp~vlgyilaGillG--P~~----------lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~--~~~~ 86 (621)
T PRK03562 21 VPIAVRLGLGSVLGYLIAGCIIG--PWG----------LRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWK--LRRS 86 (621)
T ss_pred HHHHHHhCCChHHHHHHHHHHhC--ccc----------ccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH--HHHH
Confidence 34477788888888755 66665 210 1111 245788999999999999999887421111 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHH
Q 023748 187 IIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQL 243 (278)
Q Consensus 187 i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~ 243 (278)
+++.... -++++.+....+. .-+|+ + -.....+....+.+.+|+..-++.++
T Consensus 87 ~~~~g~~-qv~~~~~~~~~~~--~~~g~-~-~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 87 IFGGGAL-QMVACGGLLGLFC--MLLGL-R-WQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHH-HHHHHHHHHHHHH--HHhCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332222 2233333222221 11232 1 12233444455556667766666665
No 26
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=28.52 E-value=6.6e+02 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=13.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHH
Q 023748 238 GTMTQLFDVAQEECSVLFLWTYLV 261 (278)
Q Consensus 238 ~~ia~~~g~~~~~~s~~l~~s~l~ 261 (278)
.++.+.+..+.+|++..+-|..++
T Consensus 102 ~Mi~Nv~~T~~~Ea~~l~s~~~~~ 125 (545)
T PRK11598 102 SMIQNIFETTPAESFALMTPQMLL 125 (545)
T ss_pred HHHHHHhhCCHHHHHHhcCHHHHH
Confidence 344555666666666666555433
No 27
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=27.06 E-value=2e+02 Score=26.43 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH-HHHcCCChhHHHHHHHHHHH
Q 023748 182 LKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM-TQLFDVAQEECSVLFLWTYL 260 (278)
Q Consensus 182 ~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i-a~~~g~~~~~~s~~l~~s~l 260 (278)
.+|+.-+.+.+.-+.+.|.+.+.+..+. +. -|.|.....-+.+..+|||-..+.++ +..-|+++ ++..+-|-.
T Consensus 81 ~~w~LhLFilI~~Ll~tPs~~~Lf~~~~-~~--~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa---~A~~v~S~f 154 (287)
T KOG4821|consen 81 LNWRLHLFILILSLLITPSIVYLFCCAV-KA--AKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNA---SALCVCSVF 154 (287)
T ss_pred hCCchHHHHHHHHHHHhHHHHHHHHHHH-hC--cchhHHHHhhheeeeecCCccccceeeeeccCccH---HHHHHHHHH
Confidence 4566777777888999999999987643 21 12465667778888999998876554 45566665 344445555
Q ss_pred HHHHHH
Q 023748 261 VAALAL 266 (278)
Q Consensus 261 ~sivtl 266 (278)
.+..+.
T Consensus 155 ~g~L~~ 160 (287)
T KOG4821|consen 155 IGNLLG 160 (287)
T ss_pred HHHHhh
Confidence 555443
No 28
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=26.56 E-value=2.1e+02 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=20.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 237 IGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWI 276 (278)
Q Consensus 237 ~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~ 276 (278)
++-+|+.+|.+....=.+.+...++......++.++.+|+
T Consensus 17 caGlA~y~gi~~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~ 56 (121)
T TIGR02978 17 CAGLADYFGVEVWLVRILVVSALLFGGGFFVLVAYIALWL 56 (121)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3567777887765544444444444333333334555554
No 29
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=26.55 E-value=1.3e+02 Score=28.85 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=47.0
Q ss_pred HHHHHHhHhcccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHH---
Q 023748 164 CITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTM--- 240 (278)
Q Consensus 164 l~llilG~~L~~~~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~i--- 240 (278)
+-+++.|+++.- |......++-...+..|.++-=++++.+.++....|++...++ -+.+|+=- .|-++.
T Consensus 53 ~~~~~~Ga~I~~--k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~l-----aiiaa~~~-~Ng~ly~al 124 (312)
T PRK12460 53 AFLLCMGAQISL--KAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGL-----AIVAAMSN-SNGGLYAAL 124 (312)
T ss_pred HHHHHhcCeeec--cccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHH-----HHHHHHhc-CcHHHHHHH
Confidence 457788888874 3333333444556788999988888888887655555443332 22233322 333444
Q ss_pred HHHcCCChhHH
Q 023748 241 TQLFDVAQEEC 251 (278)
Q Consensus 241 a~~~g~~~~~~ 251 (278)
+++||.+++..
T Consensus 125 ~~~yG~~~d~g 135 (312)
T PRK12460 125 MGEFGDERDVG 135 (312)
T ss_pred HHHcCCHhhhh
Confidence 57787665443
No 30
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=24.84 E-value=2e+02 Score=23.62 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023748 237 IGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWIL 277 (278)
Q Consensus 237 ~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~l 277 (278)
++-+|+.+|.+....=.+.+.+.++..+..+++.++.+|++
T Consensus 22 CaGiA~y~gi~~~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~ 62 (118)
T PRK10697 22 CAGIAHYFDVPVKLVRIIVVLSIFFGLFVFTLVAYIILSFA 62 (118)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 35677888888755544444444443333455556666653
No 31
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.97 E-value=5.3e+02 Score=23.09 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 023748 184 PLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP 216 (278)
Q Consensus 184 ~~~i~~ii~vRlillP~i~~~iv~~~~~~g~l~ 216 (278)
.+.++.+++ =++-.|..+-.+.+++.+.|.-+
T Consensus 68 lklLLiIvF-llLTaPVaSHaIARAAyr~Gv~~ 99 (197)
T PRK12585 68 ARVLLAVLF-IFLTTPVASHLINRAAYDTGVPL 99 (197)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCc
Confidence 344444444 48899999999999988888543
No 32
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=23.47 E-value=2.3e+02 Score=27.21 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=48.3
Q ss_pred HHHHHHhHhcccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHhhcchHHHHHH
Q 023748 164 CITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGF-----LPSDPLYHYVLMVQFTLPPAMNIG 238 (278)
Q Consensus 164 l~llilG~~L~~~~~~~~~~~~~i~~ii~vRlillP~i~~~iv~~~~~~g~-----l~~dpl~~~Vlllq~a~P~A~~~~ 238 (278)
+-+++.|+++.- |......++-...+..|+++-=++++.+.++....|. +... .+-+.+|+-..+..-
T Consensus 53 ~~l~~~Ga~I~~--k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS-----~LAiiaa~~~~NggL 125 (314)
T PF03812_consen 53 VFLFCMGAQIDL--KSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLS-----ALAIIAAMTNSNGGL 125 (314)
T ss_pred HHHHHhccccch--hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchH-----HHHHHHHHhcCCHHH
Confidence 456778888764 3333344566667899999999999998887654442 3322 233334443333332
Q ss_pred --HHHHHcCCChhHHHH
Q 023748 239 --TMTQLFDVAQEECSV 253 (278)
Q Consensus 239 --~ia~~~g~~~~~~s~ 253 (278)
.++++||.+++..+.
T Consensus 126 Y~aL~~~yGd~~D~gA~ 142 (314)
T PF03812_consen 126 YLALMGQYGDEEDVGAF 142 (314)
T ss_pred HHHHHHHhCCHHHhHHH
Confidence 233667666544443
No 33
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=20.74 E-value=8.5e+02 Score=24.32 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCC-CCCHH-HHHHHHHhhcchHHHHHH-HHHHHcCCC
Q 023748 192 CVRYIALPFIGVWVVKAAAALGFL-PSDPL-YHYVLMVQFTLPPAMNIG-TMTQLFDVA 247 (278)
Q Consensus 192 ~vRlillP~i~~~iv~~~~~~g~l-~~dpl-~~~Vlllq~a~P~A~~~~-~ia~~~g~~ 247 (278)
..+++++|++.+.++.+..|..-= ...++ ...+..+.+.+-.|..++ .++..||.+
T Consensus 76 LLqMivmPLVfiSIlsAi~kl~~~~~lgKis~l~i~~ll~ttaIAA~iGi~~~~~fgLt 134 (458)
T COG1823 76 LLQMIVMPLVFISILSAIAKLDNASKLGKISLLTIGTLLFTTAIAALIGILVALLFGLT 134 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 567899999999888776554211 01221 222233333444444444 455777764
Done!