Query 023748
Match_columns 278
No_of_seqs 201 out of 963
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 99.0 4.1E-09 1.4E-13 98.5 13.0 139 117-274 17-156 (332)
2 1nov_D Nodamura virus coat pro 28.5 84 0.0029 20.3 4.0 32 100-131 2-34 (44)
3 1pi7_A VPU protein, U ORF prot 25.5 14 0.00047 23.2 -0.1 12 10-21 16-27 (36)
4 2z2q_B Coat protein gamma; wil 23.6 1.1E+02 0.0038 19.7 3.9 28 100-127 2-30 (44)
5 1tm9_A GI3844938, hypothetical 11.6 1.7E+02 0.0058 22.6 3.0 19 199-217 94-112 (137)
6 3rlb_A THIT; S-component, ECF 9.0 8E+02 0.027 20.3 7.8 76 119-203 62-140 (192)
7 1f8v_D Mature capsid protein g 5.5 1.2E+02 0.004 19.3 -0.3 13 100-112 2-14 (40)
8 2kog_A Vesicle-associated memb 4.7 9.8E+02 0.033 18.1 4.6 18 113-130 93-110 (119)
9 1xou_A ESPA; coiled coil, heli 4.3 2.1E+02 0.0071 24.2 0.4 22 4-25 37-58 (192)
10 2zy9_A Mg2+ transporter MGTE; 4.2 2E+03 0.067 20.0 11.3 49 227-276 421-469 (473)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.98 E-value=4.1e-09 Score=98.47 Aligned_cols=139 Identities=12% Similarity=-0.049 Sum_probs=108.3
Q ss_pred hChhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhccccc-ccCCCChhHHHHHHHHHH
Q 023748 117 LAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGL-RSSTLKPLIIIAVVCVRY 195 (278)
Q Consensus 117 ~nP~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~-~~~~~~~~~i~~ii~vRl 195 (278)
-++.++..++|.+++..-+- ....+ +..-..++.++|+..|.++.... ++...+++......+.++
T Consensus 17 ~~~~~l~i~~~~~lg~~~P~---------~~~~~----~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 17 GKTFSLWAALFAAAAFFAPD---------TFKWA----GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp HHTHHHHHHHHHHHHHHCGG---------GTGGG----GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcch---------hhhhh----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence 34557777777777765320 01111 11223578899999999998642 222234566777889999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 196 IALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYM 274 (278)
Q Consensus 196 illP~i~~~iv~~~~~~g~l~~dpl~~~Vlllq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~ 274 (278)
+++|++++++.++ ++.||.+...+++..++|++..+.++++++|+|.+.+......+++++++++|+|..++.
T Consensus 84 vi~Pll~~~l~~~------~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 84 AIMPATAWCLSKL------LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHHHHH------TTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999998874 356899999999999999999999999999999999999999999999999999998875
No 2
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=28.53 E-value=84 Score=20.35 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=20.1
Q ss_pred hhhhhhHHHHHHHHHHhhC-hhHHHHHHHHHHH
Q 023748 100 SFWKRSLEFLHQLLEELLA-PPTLAAIVGFIFG 131 (278)
Q Consensus 100 ~~~~~~~~~~~~~lk~l~n-P~~iA~ilGlii~ 131 (278)
++|+|.++++++.+...-+ |--++.+..-+=+
T Consensus 2 ~mWErVk~ilks~l~~aS~iPGPVG~~asGi~g 34 (44)
T 1nov_D 2 TFWERVRSILKSGLNFASTIPGPVGVAATGIKG 34 (44)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchhHHHHhHHH
Confidence 5899998887777665544 5555554444333
No 3
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=25.52 E-value=14 Score=23.18 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=10.1
Q ss_pred hhhHhhhheeee
Q 023748 10 LGGFFIWSYSYQ 21 (278)
Q Consensus 10 vg~i~iwtyvy~ 21 (278)
+-+|.+||+||-
T Consensus 16 IiaIVVWtiv~i 27 (36)
T 1pi7_A 16 IIAIVVWSIVII 27 (36)
T ss_pred HHHHHHHHHHHH
Confidence 668999999984
No 4
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=23.57 E-value=1.1e+02 Score=19.72 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHhhC-hhHHHHHHH
Q 023748 100 SFWKRSLEFLHQLLEELLA-PPTLAAIVG 127 (278)
Q Consensus 100 ~~~~~~~~~~~~~lk~l~n-P~~iA~ilG 127 (278)
++|+|.++++++.+..+-+ |--++.+..
T Consensus 2 ~~WErVk~ilks~l~a~S~iPGPVG~~as 30 (44)
T 2z2q_B 2 SMWERVKSIIKSSLAAASNIPGPIGVAAS 30 (44)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 5789988887776655443 544444433
No 5
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=11.61 E-value=1.7e+02 Score=22.58 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 023748 199 PFIGVWVVKAAAALGFLPS 217 (278)
Q Consensus 199 P~i~~~iv~~~~~~g~l~~ 217 (278)
|++.+.+.+++.++||+.+
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T 1tm9_A 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 6777778888899999975
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=8.99 E-value=8e+02 Score=20.25 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHhhHhHhHhhhcCCCchhhHHHHHHHhccchhHHHHHHHhHhcccccccCCCChhH---HHHHHHHHH
Q 023748 119 PPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGDGTIPCITLILGGNLIQGLRSSTLKPLI---IIAVVCVRY 195 (278)
Q Consensus 119 P~~iA~ilGlii~~ip~lr~~~~~~~~pL~~i~~sl~~lG~aaiPl~llilG~~L~~~~~~~~~~~~~---i~~ii~vRl 195 (278)
=+..|.++|++.|++.. +.++...+.+++..++++ ++.+.+.+.+.+.+. ++++..... .+...+.|+
T Consensus 62 Gp~~G~~~g~i~gll~~----i~g~~~~~~p~q~lldy~----laf~~~GlaG~f~~~-~~~~~~~~~~lg~~ig~~~r~ 132 (192)
T 3rlb_A 62 GLTAGLVGGLIWGILSM----ITGHAYILSLSQAFLEYL----VAPVSLGIAGLFRQK-TAPLKLAPVLLGTFVAVLLKY 132 (192)
T ss_dssp CHHHHHHHHHHHHHHHH----HTTCSCCSSHHHHHHHHT----HHHHHGGGGGGGCCC-SSSCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH----HhCCccccchHHHHHHHH----HHHHHHHHHHhheec-cccccHHHHHHHHHHHHHHHH
Confidence 34556777777777664 334323335666666543 344445555555542 112111122 344667888
Q ss_pred HHHHHHHH
Q 023748 196 IALPFIGV 203 (278)
Q Consensus 196 illP~i~~ 203 (278)
+..=+.++
T Consensus 133 ~~~~isgv 140 (192)
T 3rlb_A 133 FFHFIAGI 140 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776666
No 7
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=5.48 E-value=1.2e+02 Score=19.27 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=8.7
Q ss_pred hhhhhhHHHHHHH
Q 023748 100 SFWKRSLEFLHQL 112 (278)
Q Consensus 100 ~~~~~~~~~~~~~ 112 (278)
++|+|.++++++.
T Consensus 2 ~mWErVk~ilks~ 14 (40)
T 1f8v_D 2 KFWEGVLRVLNQI 14 (40)
T ss_dssp HHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH
Confidence 5788887765544
No 8
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=4.71 E-value=9.8e+02 Score=18.14 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=7.4
Q ss_pred HHHhhChhHHHHHHHHHH
Q 023748 113 LEELLAPPTLAAIVGFIF 130 (278)
Q Consensus 113 lk~l~nP~~iA~ilGlii 130 (278)
+|+..--.+++.++-+++
T Consensus 93 wkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 93 WKNLKMMIILGVICAIIL 110 (119)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444443334444443333
No 9
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=4.34 E-value=2.1e+02 Score=24.15 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.9
Q ss_pred hhhhhhhhhHhhhheeeeeecc
Q 023748 4 LANLMQLGGFFIWSYSYQLIKQ 25 (278)
Q Consensus 4 ~S~smavg~i~iwtyvy~~~~~ 25 (278)
.=||+.+++.|.+-|+||-..-
T Consensus 37 ~~lg~~~avL~~f~~l~~~ls~ 58 (192)
T 1xou_A 37 NKLGVFQAAILMFAYMYQAQSD 58 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999875543
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=4.21 E-value=2e+03 Score=19.97 Aligned_cols=49 Identities=16% Similarity=0.010 Sum_probs=33.7
Q ss_pred HhhcchHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023748 227 VQFTLPPAMNIGTMTQLFDVAQEECSVLFLWTYLVAALALTGWSMVYMWI 276 (278)
Q Consensus 227 lq~a~P~A~~~~~ia~~~g~~~~~~s~~l~~s~l~sivtl~lw~~l~~~~ 276 (278)
+..|.=.+..+..+.+.+|.|+..+|.- +.||+.-++.+-++..+..++
T Consensus 421 ~~~a~~~g~~~p~~~~~~~~DPa~~s~p-~itt~~D~~g~~~~~~~a~~~ 469 (473)
T 2zy9_A 421 VFFANLVGAMLPFLLRRLGVDPALVSNP-LVATLSDVTGLLIYLSVARLL 469 (473)
T ss_dssp HHHHHHHHTTHHHHHHHHTCCGGGSCHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccccccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666678889999998766554 578888887776666555443
Done!