Query 023748
Match_columns 278
No_of_seqs 201 out of 963
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 12:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tm9a_ a.225.1.1 (A:) Hypothe 11.6 80 0.0058 22.6 3.0 19 199-217 94-112 (137)
2 d2e74d2 f.23.12.1 (D:12-45) IS 6.5 2.3E+02 0.017 15.6 3.2 25 114-138 5-29 (34)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 3.1 4E+02 0.029 14.0 2.1 13 121-133 9-21 (30)
4 d1okkd1 a.24.13.1 (D:21-78) Si 2.7 2.9E+02 0.021 17.0 1.5 21 99-119 38-58 (58)
5 d1ldda_ a.4.5.34 (A:) Anaphase 2.6 3.4E+02 0.025 17.6 1.9 12 254-265 7-18 (74)
6 d2fh5a1 d.110.4.4 (A:1-129) Si 2.6 1.1E+02 0.0082 22.1 -0.9 9 11-19 11-19 (129)
7 d1q90g_ f.23.26.1 (G:) PetG su 2.5 4.2E+02 0.031 14.1 1.8 10 125-134 6-15 (30)
8 d1q90r_ f.23.12.1 (R:) ISP sub 2.1 6.7E+02 0.049 14.1 3.2 21 115-135 11-31 (39)
9 d1hlva1 a.4.1.7 (A:1-66) DNA-b 2.0 5.1E+02 0.037 16.2 2.0 15 240-254 31-45 (66)
10 d2axti1 f.23.37.1 (I:1-35) Pho 1.9 4.2E+02 0.031 14.6 1.3 8 212-219 21-28 (35)
No 1
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=11.61 E-value=80 Score=22.58 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 023748 199 PFIGVWVVKAAAALGFLPS 217 (278)
Q Consensus 199 P~i~~~iv~~~~~~g~l~~ 217 (278)
|++.+.+.+++.++||+.+
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 6777778888899999975
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.50 E-value=2.3e+02 Score=15.61 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.1
Q ss_pred HHhhChhHHHHHHHHHHHhhHhHhH
Q 023748 114 EELLAPPTLAAIVGFIFGAVVWLRN 138 (278)
Q Consensus 114 k~l~nP~~iA~ilGlii~~ip~lr~ 138 (278)
++++|=.+.+.+.|..+|..=++-+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvk 29 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHh
Confidence 4566777899999999987654433
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.06 E-value=4e+02 Score=13.98 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhh
Q 023748 121 TLAAIVGFIFGAV 133 (278)
Q Consensus 121 ~iA~ilGlii~~i 133 (278)
+.|+++|+.+.++
T Consensus 9 ifac~i~lfffai 21 (30)
T d2axtt1 9 IFACIIALFFFAI 21 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6788888877655
No 4
>d1okkd1 a.24.13.1 (D:21-78) Signal recognition particle receptor, FtsY {Thermus aquaticus [TaxId: 271]}
Probab=2.75 E-value=2.9e+02 Score=16.99 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=12.5
Q ss_pred hhhhhhhHHHHHHHHHHhhCh
Q 023748 99 ESFWKRSLEFLHQLLEELLAP 119 (278)
Q Consensus 99 ~~~~~~~~~~~~~~lk~l~nP 119 (278)
.+.++.++..++.-+.+++.|
T Consensus 38 ~~~~~~l~~~Lke~l~~~L~P 58 (58)
T d1okkd1 38 ASGRKDLKEAVKEKLVGMLEP 58 (58)
T ss_dssp TTCCSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 334455666666666666665
No 5
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.64 E-value=3.4e+02 Score=17.59 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHH
Q 023748 254 LFLWTYLVAALA 265 (278)
Q Consensus 254 ~l~~s~l~sivt 265 (278)
=.+|+|+...+|
T Consensus 7 q~~w~yI~gMLt 18 (74)
T d1ldda_ 7 QRSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 367999988875
No 6
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60 E-value=1.1e+02 Score=22.14 Aligned_cols=9 Identities=33% Similarity=1.394 Sum_probs=7.6
Q ss_pred hhHhhhhee
Q 023748 11 GGFFIWSYS 19 (278)
Q Consensus 11 g~i~iwtyv 19 (278)
|||.+|+|.
T Consensus 11 GGiVLW~~~ 19 (129)
T d2fh5a1 11 GGLVLWCFQ 19 (129)
T ss_dssp TSBEEEEEB
T ss_pred CeEEEEeec
Confidence 899999863
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.51 E-value=4.2e+02 Score=14.09 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=5.6
Q ss_pred HHHHHHHhhH
Q 023748 125 IVGFIFGAVV 134 (278)
Q Consensus 125 ilGlii~~ip 134 (278)
+.|+++|++|
T Consensus 6 l~GivlGlip 15 (30)
T d1q90g_ 6 LCGIVLGLVP 15 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHhhHH
Confidence 4455556565
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.12 E-value=6.7e+02 Score=14.15 Aligned_cols=21 Identities=5% Similarity=-0.236 Sum_probs=11.9
Q ss_pred HhhChhHHHHHHHHHHHhhHh
Q 023748 115 ELLAPPTLAAIVGFIFGAVVW 135 (278)
Q Consensus 115 ~l~nP~~iA~ilGlii~~ip~ 135 (278)
+++|=.+.|.+-+-..++.-+
T Consensus 11 ~~MNLll~G~~~~~~~g~l~p 31 (39)
T d1q90r_ 11 NIMNLILAGGAGLPITTLALG 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchhhhhhccc
Confidence 344555666666666665543
No 9
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.00 E-value=5.1e+02 Score=16.15 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=9.6
Q ss_pred HHHHcCCChhHHHHH
Q 023748 240 MTQLFDVAQEECSVL 254 (278)
Q Consensus 240 ia~~~g~~~~~~s~~ 254 (278)
+|..||.+.+..+.+
T Consensus 31 IA~~fGv~~STvs~I 45 (66)
T d1hlva1 31 IARRFNIPPSTLSTI 45 (66)
T ss_dssp HHHHHTCCHHHHHHH
T ss_pred HHHHhCCChhHHHHH
Confidence 567777776655554
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.93 E-value=4.2e+02 Score=14.64 Aligned_cols=8 Identities=63% Similarity=1.360 Sum_probs=3.9
Q ss_pred cCCCCCCH
Q 023748 212 LGFLPSDP 219 (278)
Q Consensus 212 ~g~l~~dp 219 (278)
+||+..||
T Consensus 21 FGFLSnDP 28 (35)
T d2axti1 21 FGFLSGDP 28 (35)
T ss_dssp HHHHTTCT
T ss_pred HhhccCCC
Confidence 34555554
Done!