BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023749
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic
OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1
Length = 280
Score = 257 bits (656), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 188/265 (70%), Gaps = 11/265 (4%)
Query: 1 MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRIT-TRSI 59
MEI + + + T+ P+ L P + + P+ +S +IS RI +RS+
Sbjct: 1 MEIFSASASLTLT--GFVPRLLPLLSPQA--RTTLCKPLLSSSSTRLISCHSRIAPSRSL 56
Query: 60 ADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119
AD + S ++ V DP VK+KA DI+ ELKG S+FLVG+NN+IKT+ GK LA+ALRY
Sbjct: 57 ADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRY 115
Query: 120 YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSA 179
YYFDSD+L+ EAAGG +A+A +E+DEK +Q++ETEVLKQLSSMGRLVVCAG+GAVQS
Sbjct: 116 YYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLR 175
Query: 180 NLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLF----ALYKEMRDGYATADVTVS 235
NLALLRHGIS+WIDVP + A+ D F SE P+LF A Y++ R GY TADV++S
Sbjct: 176 NLALLRHGISIWIDVPLDITAKGDDDSF-HSEPSPELFDTLKASYEKSRKGYETADVSIS 234
Query: 236 LQKVASQLGYDDLDAVTTEDMTLEV 260
L+K+A++L ++DL+AVT+ED+ LE+
Sbjct: 235 LEKIATKLEFEDLEAVTSEDIALEI 259
>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK1 PE=1 SV=1
Length = 308
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 19/220 (8%)
Query: 53 RITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKF 112
R S +T N+V D + +K+K+ ++ L G ++LVGM + K+ +GK
Sbjct: 62 RAKKSSGGHETLHNSV------DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKI 115
Query: 113 LADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172
+++ L Y +FDSD LV +A G S A+ F+ E ++ E+ VL+ LSSM RLVV G
Sbjct: 116 MSEVLGYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGG 175
Query: 173 GAVQSSANLALLRHGISLWIDVPPGMVAR------------MDH-SGFPESEVLPQLFAL 219
GAV N ++ G+S+W+DVP +AR +D SG P + +L L
Sbjct: 176 GAVIRPVNWKYMKKGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSML 235
Query: 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
++ D YA ADV VSL+++AS+ G+DD+ +T D+ +E
Sbjct: 236 AEQRGDAYANADVRVSLEEIASKQGHDDVSKLTPTDIAIE 275
>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK2 PE=1 SV=1
Length = 307
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 19/211 (9%)
Query: 62 DTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY 121
D+ N+V D + +K+K+ ++ L G ++LVGM + K+ + K LA+ L Y +
Sbjct: 69 DSLHNSV------DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSF 122
Query: 122 FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181
FDSD LV +A G S A+ F+E E ++ E+ VL+ LSSM RLVV G GAV N
Sbjct: 123 FDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNW 182
Query: 182 ALLRHGISLWIDVPPGMVAR------------MDH-SGFPESEVLPQLFALYKEMRDGYA 228
++ G+S+W+DVP +AR +D S P + +L L ++ D YA
Sbjct: 183 KYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYA 242
Query: 229 TADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
AD VSL+++A++ G+DD+ +T D+ +E
Sbjct: 243 NADARVSLEEIAAKQGHDDVSKLTPTDIAIE 273
>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK3 PE=1 SV=2
Length = 287
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 13/198 (6%)
Query: 75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
D + +K+KA D+ L ++LVGM + KT +GK LA+ L Y +FDSD LV +A G
Sbjct: 73 DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132
Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
S A+ F+ E ++ E+EVL+ LSSM RLVV G GAV N + ++ G ++W+DV
Sbjct: 133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192
Query: 195 PPGMVARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVAS 241
P +AR SG P ++ +L AL+++ D YA AD VSL+ +A
Sbjct: 193 PLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAV 252
Query: 242 QLGYDDLDAVTTEDMTLE 259
+ G+ ++ +T + +E
Sbjct: 253 KQGHSNVTTLTPSAIAIE 270
>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1
PE=1 SV=2
Length = 303
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 13/193 (6%)
Query: 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
+K+KA ++ L G S++LVGM + KT +GK ++ L Y +FD D+L+ +A G S A+
Sbjct: 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 148
Query: 140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV 199
F E ++ ET+ LK+LSS ++VV G GAV N + GIS+W+DVP +
Sbjct: 149 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEAL 208
Query: 200 ARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYD 246
A D SG S +L A++ E + Y A+ VSL+ +A++ GY
Sbjct: 209 AHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYK 268
Query: 247 DLDAVTTEDMTLE 259
++ +T ++ +E
Sbjct: 269 NVSDLTPTEIAIE 281
>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1
SV=1
Length = 300
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 14/202 (6%)
Query: 72 AAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131
A+ D +K KA ++ L G V+LVGM KT +G+ LA+ L Y +FD D L+ +A
Sbjct: 83 ASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQA 142
Query: 132 AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLW 191
GG + A+ F E ++ ETEVL +LS M RLVV G GAV N + GIS+W
Sbjct: 143 VGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVW 202
Query: 192 IDVPPGMVARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQK 238
+DVP +A+ + SG L +L L + + YA A VSL+
Sbjct: 203 LDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASARVSLEN 262
Query: 239 VASQLGYDDLDAVTTEDMTLEV 260
+A + D+ +T ++TLEV
Sbjct: 263 IALK-REKDVCHITPAEITLEV 283
>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2
PE=1 SV=1
Length = 300
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
+KKKA ++ L G S++LVGM + KT +GK +A +L Y +FD D+L+ +A G S A+
Sbjct: 85 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 144
Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGM 198
F E +++ ETE LK+LS M ++VV G GAV N + GIS+W+DVP
Sbjct: 145 IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEA 204
Query: 199 VARM--------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG 244
+A D SG + L +L ++ + Y A VSL+ + +LG
Sbjct: 205 LAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLG 264
Query: 245 YDDLDAVTTEDMTLE 259
Y + +T ++ +E
Sbjct: 265 YRSVSDLTPAEIAIE 279
>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
/ SAUG 1402/1) GN=aroK PE=3 SV=1
Length = 190
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 12/157 (7%)
Query: 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG 148
T L G +FLVG+ + KT +GK LA++L Y Y D+DSL+ E G S + F E G
Sbjct: 5 TALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGEAG 63
Query: 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMDHSGF 207
++Q ET+VL++++S RLVV G G V N + L+ G+ +W+DVP P ++ R++
Sbjct: 64 FRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLEGD-- 121
Query: 208 PESEVLPQ-------LFALYKEMRDGYATADVTVSLQ 237
++ L Q L AL+++ RD YA AD+ ++++
Sbjct: 122 -QNRPLLQTEAPATTLQALWEQRRDRYAQADLRIAIE 157
>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942)
GN=aroK PE=3 SV=1
Length = 190
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 12/157 (7%)
Query: 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG 148
T L G +FLVG+ + KT +GK LA++L Y Y D+DSL+ E G S + F E G
Sbjct: 5 TALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGEAG 63
Query: 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMDHSGF 207
++Q ET+VL++++S RLVV G G V N + L+ G+ +W+DVP P ++ R++
Sbjct: 64 FRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLEGD-- 121
Query: 208 PESEVLPQ-------LFALYKEMRDGYATADVTVSLQ 237
++ L Q L AL+++ RD YA AD+ ++++
Sbjct: 122 -QNRPLLQTEAPATTLQALWEQRRDRYAQADLRIAIE 157
>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=aroK PE=3 SV=1
Length = 187
Score = 100 bits (250), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 7/153 (4%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G +V+L+GM + K+ +G LA LR+ +FD+D LV E GG S A+ F E E ++
Sbjct: 10 LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLV-EQVGGSSIAQIFAEHGEAYFR 68
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPES 210
ET+VL QLSS RLV+ G G V N + L HG+++W+DV P ++ + +
Sbjct: 69 DLETQVLAQLSSYTRLVIATGGGIVLRPKNWSYLHHGLTVWLDVAPELIWQRLKRDPGQR 128
Query: 211 EVL----PQ--LFALYKEMRDGYATADVTVSLQ 237
+L PQ L+ L +E YA ADV V ++
Sbjct: 129 PLLQTPDPQAALYKLMQEREPFYAQADVRVPIR 161
>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK
PE=3 SV=1
Length = 189
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 7/160 (4%)
Query: 88 STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK 147
+ L+G +V+L+GM + K+ LG LA LR +FD+D+LV + AG S A+ F E E
Sbjct: 7 AERLRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGC-SIAQIFAEQGEA 65
Query: 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGF 207
+++ ET+VL QLS RLVV G G V N + L HG+++W+D P ++ +
Sbjct: 66 HFRELETQVLAQLSGYTRLVVATGGGIVLRPKNWSYLHHGLTVWLDAAPELIWQRLKRDP 125
Query: 208 PESEVL----PQ--LFALYKEMRDGYATADVTVSLQKVAS 241
+ +L PQ L L +E YA ADV V + AS
Sbjct: 126 GQRPLLQTPDPQAALQRLMQEREPFYAQADVRVPIHSEAS 165
>sp|B0JFW8|AROK_MICAN Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843)
GN=aroK PE=3 SV=1
Length = 190
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G SVFL+GM + K+ LG+ L+ L+Y +FD+D L+ E G+ + F + E ++
Sbjct: 10 LRGLSVFLLGMMGSGKSTLGELLSRRLQYRFFDTDILI-ERVAGKKIREIFVDEGEATFR 68
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMDHSG--- 206
+ ET+VL +LSS+ + V+ G G V N + LRHG+ +W+DVP +V R+
Sbjct: 69 ELETQVLAELSSLTKTVIATGGGMVLKPMNWSYLRHGLMIWLDVPLEILVKRLKQDTSRP 128
Query: 207 -FPESEVLPQLFALYKEMRDGYATADVTV 234
+++ +L L ++ R YA AD+ +
Sbjct: 129 LLQSTDLDSKLELLLEQRRGLYAEADLRI 157
>sp|A5GQN5|AROK_SYNR3 Shikimate kinase OS=Synechococcus sp. (strain RCC307) GN=aroK PE=3
SV=1
Length = 195
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L+GT+++LVGM + K+ +G LA AL Y + D+D+++ +AAG S + F E
Sbjct: 10 LGERLQGTNLYLVGMMGSGKSTVGPLLAKALGYRFLDADAVISQAAGC-SIPEIFERDGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM---D 203
+G++Q E +VL+QLS LVV G G V AN LR G+ +W+DV + R D
Sbjct: 69 EGFRQLERQVLQQLSQWHSLVVATGGGIVTVPANWGELRQGVVIWLDVAEEELMRRLQAD 128
Query: 204 HSGFP---ESEVLPQLFALYKEMRDGYATADVTVSLQ 237
G P + +L L ++ + Y AD+ VS Q
Sbjct: 129 PGGRPLLAGDDPAGRLHGLLEKRQPLYGQADLRVSAQ 165
>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=aroK PE=3 SV=1
Length = 181
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+S+ L+G +++L+GM A KT +G LA L Y + D+D+++ +A +S + F E+ E
Sbjct: 1 MSSLLQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQATK-KSINEIFAEAGE 59
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP 195
G++Q E++VL Q+ S +L V G G V N + L HG+ LW+DVP
Sbjct: 60 AGFRQIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLILWLDVP 108
>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3
SV=1
Length = 187
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 86/153 (56%), Gaps = 6/153 (3%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
L+G +++L+GM + K+ +GK LA L Y +FD+D L+ E +S F E ++
Sbjct: 7 LQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILI-ERVTQQSINDIFVTQGETVFR 65
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV-ARMDHSG--- 206
ET+VL ++++ R V+ G G V +S N + L HG+ +W+DV ++ R+ +
Sbjct: 66 DIETQVLSEVAACTRSVIATGGGIVLNSQNWSYLHHGLIIWLDVSIKLLKTRLINDTTRP 125
Query: 207 -FPESEVLPQLFALYKEMRDGYATADVTVSLQK 238
ES++ +L L ++ R+ Y AD+T+ + +
Sbjct: 126 LLKESDLTLKLKTLDEQRRNLYNKADLTIVINQ 158
>sp|Q3AH55|AROK_SYNSC Shikimate kinase OS=Synechococcus sp. (strain CC9605) GN=aroK PE=3
SV=1
Length = 199
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 15/158 (9%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G S++LVGM + KT G+ LA+ L Y + D+D+ V E A G S + F +
Sbjct: 16 LKKRLSGRSLYLVGMMGSGKTSTGRPLAERLGYGFVDADA-VIEQAAGCSIPEIFERDGD 74
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID-VPPGMVARMDHS 205
G++ E++VL +S LVV G G V N LL GI +W+D VP ++ R++
Sbjct: 75 AGFRSLESQVLSAISQRHSLVVATGGGVVTQPENWGLLHSGIVIWLDVVPDQLLQRLNA- 133
Query: 206 GFPESEVLP---------QLFALYKEMRDGYATADVTV 234
+S V P L AL E R Y+ AD+TV
Sbjct: 134 ---DSTVRPLLQTTDPEASLNALLNERRPLYSEADLTV 168
>sp|Q7VE85|AROK_PROMA Shikimate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375
/ SS120) GN=aroK PE=3 SV=1
Length = 190
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKA 140
K + + +L G ++LVGM + K+ G LA L+Y + D D L+ E S ++
Sbjct: 4 KLRPNQVIKKLGGRIIYLVGMMGSGKSTTGPHLAKLLKYSFIDQDELI-EKVAKSSVSQI 62
Query: 141 FRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV- 199
FRE E G++ ET+VLKQ+ LVV G G V S N +L GI +W+D ++
Sbjct: 63 FREEGENGFRDIETQVLKQIGQRHSLVVATGGGLVTRSENWGVLHQGIVIWLDPNRELLF 122
Query: 200 ARMDHSGFPESEVLPQ------LFALYKEMRDGYATADVTVSLQK 238
AR+ +L L +L K+ YA AD+ +S+++
Sbjct: 123 ARLKSDKTVVRPLLDNKDPKDVLDSLIKQRYLSYAEADLHISIER 167
>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=aroK PE=3 SV=1
Length = 181
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+S+ L+G +++L+GM A KT +G LA L Y + D+D+++ +AA +S + F E+ E
Sbjct: 1 MSSLLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAK-KSINEIFAEAGE 59
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
G++Q E++VL Q+ S +L V G G V N + L HG+ +W+DV
Sbjct: 60 AGFRQIESDVLAQVCSYTKLTVATGGGIVLRRENWSYLHHGLIVWLDV 107
>sp|Q7U469|AROK_SYNPX Shikimate kinase OS=Synechococcus sp. (strain WH8102) GN=aroK PE=3
SV=1
Length = 191
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G S++LVGM + KT G+ LA+ L Y + D+D+ V E A G S + F E
Sbjct: 8 LKQRLGGRSLYLVGMMGSGKTSTGRPLAEQLGYGFVDADA-VIEQAAGCSIPEIFERDGE 66
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSG 206
G++ E++VL + LVV G G V N LL GI +W+DV P + + +
Sbjct: 67 AGFRALESQVLNAIGQRHSLVVATGGGVVTQQENWGLLHSGIVVWLDVVPEQLMQRLRA- 125
Query: 207 FPESEVLP---------QLFALYKEMRDGYATADVTVSLQK 238
+S V P L AL + R YA AD+TV + +
Sbjct: 126 --DSTVRPLLQTEDPDAALNALLNQRRPLYAEADLTVVINQ 164
>sp|B2IX35|AROK_NOSP7 Shikimate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=aroK PE=3 SV=1
Length = 181
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+S+ L+G +++L+GM KT +G LA L Y + D D ++ +A +S + F E E
Sbjct: 1 MSSLLQGVNLYLIGMMGVGKTTVGPLLAKHLGYGFLDLDGVIAKATD-KSINQLFAEEGE 59
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DH 204
G++Q E++VL Q+ + +L + G G V N L HG+ +W+DVP ++ R +
Sbjct: 60 AGFRQIESDVLSQVCAFTKLTIATGGGIVLRRENWGYLHHGLIVWLDVPVELIYRRLAED 119
Query: 205 SGFP---ESEVLPQLFALYKEMRDGYATADVTVSLQK 238
+ P ++++ +L +L ++ Y+ AD+ +++Q+
Sbjct: 120 TTRPLLQDADLKGKLRSLLEQRTPLYSQADLHITVQE 156
>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=aroK PE=3 SV=1
Length = 189
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 1/107 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
I +L+G ++FL+GM + K+ +G LA+ L Y +FD+D L+ E G++ A F E E
Sbjct: 6 IKEQLQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLI-ERVAGKAIADIFAEDGE 64
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID 193
++ ETEVL L++ R V+ G G V N + L HG+ +W+D
Sbjct: 65 DTFRDLETEVLGHLAAQTRSVIATGGGVVLRRQNWSYLHHGLVIWLD 111
>sp|Q7NH27|AROK_GLOVI Shikimate kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=aroK
PE=3 SV=1
Length = 177
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 11/153 (7%)
Query: 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
LKG S++LVGM + K+ +G+ LA+ L Y + D D+L+ E G+ + F E ++
Sbjct: 2 LKGVSLYLVGMMGSGKSTVGRLLAEKLGYGFVDLDALI-EQVSGKRVGEIFEREGEAVFR 60
Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMDHSGFPE 209
E+ VL ++S+ RLVV G G V + N L HG+ +W+D ++ R++H P
Sbjct: 61 DLESRVLAEVSAYTRLVVATGGGVVLARRNWGYLHHGVVVWLDADIETLLGRVEHE--PG 118
Query: 210 SEVL-------PQLFALYKEMRDGYATADVTVS 235
+ L +L L E YA ADV VS
Sbjct: 119 TRPLLAGGDRHLRLVELLGERARLYAQADVRVS 151
>sp|Q3B009|AROK_SYNS9 Shikimate kinase OS=Synechococcus sp. (strain CC9902) GN=aroK PE=3
SV=1
Length = 191
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
DP ++K++ L G S++L+GM + KT G+ LA L Y + D+D+ V E G
Sbjct: 3 DPILSLKER-------LSGRSIYLIGMMGSGKTSTGRPLAKRLGYGFVDADA-VIEQVAG 54
Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
+ + F E G++ E++VL +S LVV G G V N L GI +W+DV
Sbjct: 55 CTIPEIFERDGEAGFRSIESQVLNAISQRHSLVVATGGGVVTKPENWGQLHSGIVVWLDV 114
Query: 195 PPGMVARMDHSGFPESEVLPQ------LFALYKEMRDGYATADVTVSLQ 237
+ + +L Q L L +E R Y AD+TV ++
Sbjct: 115 NRAQLIERLRDDSTQRPLLQQPNPEAALDTLLQERRPLYGEADLTVVIK 163
>sp|Q8DKH7|AROK_THEEB Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1)
GN=aroK PE=3 SV=1
Length = 183
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G +++LVGM A KT G+ LA L Y + D+D+ V A + F + E
Sbjct: 3 LQERLGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDA-VITAFRQRPIREIFAQEGE 61
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVA---RMD 203
+++ E +VL Q+SS LVV G G V + N + L HGI +W+ VP ++ R D
Sbjct: 62 PAFRELEQQVLAQVSSYHHLVVATGGGIVLNPMNWSYLHHGIVVWLHVPLAVLCQRLRQD 121
Query: 204 HSG--FPESEVLPQLFALYKEMRDGYATADVTVSL 236
E + +L L + + YA AD+ + +
Sbjct: 122 RERPLLQEQPLEERLGELLQARQHLYAQADLELRI 156
>sp|Q46HR4|AROK_PROMT Shikimate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=aroK
PE=3 SV=1
Length = 198
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA 137
AV+ + +L G ++FL+GM + K+ G LA + Y + D+D V E A +S
Sbjct: 1 MAVQSTPKTLKEKLGGRNIFLIGMMGSGKSQTGPVLAKMINYAFVDTDD-VIEKASKQSI 59
Query: 138 AKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
+ F + EK ++ E +VLK++S LV+ G G V N +L GI +W+D+
Sbjct: 60 SSIFEKDGEKVFRDVEKKVLKEISQHHSLVIATGGGLVTLPENWGILHQGIVIWLDL 116
>sp|A9BCW6|AROK_PROM4 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9211)
GN=aroK PE=3 SV=1
Length = 197
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ +L G +++LVGM + K+ G LA L Y + D D V E +S ++ F + E
Sbjct: 10 VCKKLGGRNLYLVGMMGSGKSRTGPVLAKKLSYGFVDVDD-VIEKVTNQSISEIFDQEGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV---ARMD 203
G+++ ET++L+++ LVV G G V N +L G+ +WID+ + R D
Sbjct: 69 IGFREIETQILQEIGQRHSLVVATGGGIVTRPENWGILHQGVVIWIDLDREIALSRLRSD 128
Query: 204 HSGFP--ESEVLPQLFALYKEMRDGYATADVTVSLQK 238
+ P + + L+KE Y +DV +S+++
Sbjct: 129 ETPRPLLQKNLDDNFDCLFKERLPIYLESDVHLSVRE 165
>sp|A2C650|AROK_PROM3 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9303)
GN=aroK PE=3 SV=1
Length = 192
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G +++LVGM + K+ G+ LA+ L Y + D+D+ V E G+ K F E E
Sbjct: 10 LKQRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDA-VIEQLAGQPIPKIFNEEGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID 193
+G++ E++VL + LVV G G V N +L GI +W++
Sbjct: 69 EGFRAMESQVLNAIGQRHSLVVATGGGMVSKPENWGILHQGIVIWLN 115
>sp|Q7V904|AROK_PROMM Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=aroK PE=3 SV=1
Length = 192
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
+ L G +++LVGM + K+ G+ LA+ L Y + D+D+ V E G+ K F E E
Sbjct: 10 LKQRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDA-VIEQLAGQPIPKIFSEEGE 68
Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID 193
G++ E++VL + LVV G G V N +L GI +W++
Sbjct: 69 AGFRTMESQVLNAIGQRHSLVVATGGGIVSKPENWGVLHQGIVIWLN 115
>sp|Q2YBB2|AROK_NITMU Shikimate kinase OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=aroK PE=3 SV=1
Length = 195
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
Query: 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE 135
P+ VK +A D + ++FLVGM A KT +G+ L+ L ++DSD + + G
Sbjct: 9 PAVDVKGEAGDRAAT---GNIFLVGMMGAGKTTVGRLLSHFLEKTFYDSDREI-QKRTGV 64
Query: 136 SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHG 187
S F E+G+++ ETE+L +L + +++ G GAV S N A+L+HG
Sbjct: 65 SIPTIFEIEGEEGFRRRETEILSELMNARNIILATGGGAVLSGVNRAMLKHG 116
>sp|P63600|AROK_NEIMB Putative shikimate kinase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=aroK PE=3 SV=1
Length = 170
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVPPGMVARMDHSGFPESEVLP 214
+LK+L + +V+ G GAV N AL+R G +++ PP + ++ + S L
Sbjct: 67 ILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL--LERTRCDNSRPLL 124
Query: 215 QLFALYKEMRDGYATAD 231
Q+ ++R+ YA D
Sbjct: 125 QVADPLAKLRELYAARD 141
>sp|P63599|AROK_NEIMA Putative shikimate kinase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=aroK PE=3 SV=1
Length = 170
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVPPGMVARMDHSGFPESEVLP 214
+LK+L + +V+ G GAV N AL+R G +++ PP + ++ + S L
Sbjct: 67 ILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL--LERTRCDNSRPLL 124
Query: 215 QLFALYKEMRDGYATAD 231
Q+ ++R+ YA D
Sbjct: 125 QVADPLAKLRELYAARD 141
>sp|A9M1U5|AROK_NEIM0 Shikimate kinase OS=Neisseria meningitidis serogroup C (strain
053442) GN=aroK PE=3 SV=1
Length = 170
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVPPGMVARMDHSGFPESEVLP 214
+LK+L + +V+ G GAV N AL+R G +++ PP + ++ + S L
Sbjct: 67 ILKKLVILPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL--LERTRCDNSRPLL 124
Query: 215 QLFALYKEMRDGYATAD 231
Q+ ++R+ YA D
Sbjct: 125 QVADPLAKLRELYAARD 141
>sp|Q5FAD3|AROK_NEIG1 Shikimate kinase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA
1090) GN=aroK PE=3 SV=1
Length = 170
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+ L+G+ A KT LG+ +A L Y ++DSD + AA G F E+G++ ET
Sbjct: 8 LILIGLMGAGKTTLGRQMAQRLDYRFYDSDHEI-AAAAGVPIPTIFEMEGEQGFRSRETA 66
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVPPGMVARMDHSGFPESEVLP 214
+LK+L + +V+ G GAV N AL+R G +++ PP + ++ + S L
Sbjct: 67 ILKKLIVLPHIVLSTGGGAVLKEENRALIRKSGTVVYLHAPPETL--LERTRCDNSRPLL 124
Query: 215 QLFALYKEMRDGYATAD 231
Q+ ++R+ YA D
Sbjct: 125 QVADPLAKLRELYAARD 141
>sp|B3EIT1|AROK_CHLL2 Shikimate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC
103803) GN=aroK PE=3 SV=1
Length = 199
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 15/153 (9%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
+FL G + + K+ +G LA++L Y + D D + E+ G+S K F E E+ ++ E E
Sbjct: 7 IFLTGFSGSGKSTIGPLLANSLGYGFIDLDQEI-ESKAGKSITKIFAEEGEQTFRNLELE 65
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM------------ 202
L+QL+ LVV G G ++++ L+R +G +++ P +AR
Sbjct: 66 TLRQLTGKKELVVSLGGGVLENNDCYRLIRENGTLVYLKSSPRSLARRLCNKTDRPLLKG 125
Query: 203 DH-SGFPESEVLPQLFALYKEMRDGYATADVTV 234
+H + E+ ++ + ++ YATAD++V
Sbjct: 126 EHGTRLSREEIELKISTILEKREPRYATADLSV 158
>sp|Q4FQI2|AROK_PSYA2 Shikimate kinase OS=Psychrobacter arcticus (strain DSM 17307 /
273-4) GN=aroK PE=3 SV=1
Length = 186
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
SVFLVG A KT +G+ LA L + DSD V E+ G A F + E G+++ ET
Sbjct: 7 SVFLVGPMGAGKTTIGRLLAKQLGRTFVDSDWYV-ESQTGADIAWIFDKEGEAGFRERET 65
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVP 195
+ +L+ ++V+ G GAV ++ N L+ GI ++++ P
Sbjct: 66 RAIDELTQQPQIVLATGGGAVMAAENREFLKQRGIVIYLNAP 107
>sp|Q1Q8Q8|AROK_PSYCK Shikimate kinase OS=Psychrobacter cryohalolentis (strain K5)
GN=aroK PE=3 SV=1
Length = 186
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
SVFLVG A KT +G+ LA L + DSD + E+ G A F + E G+++ ET
Sbjct: 7 SVFLVGPMGAGKTTIGRLLAKQLGRSFVDSDWYI-ESQTGADIAWIFAKEGEAGFRERET 65
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVP 195
+ +L+ ++V+ G GAV ++ N L+ GI ++++ P
Sbjct: 66 RAIDELTQQPQIVLATGGGAVMAAENREYLKQRGIVIYLNAP 107
>sp|Q2RI74|AROK_MOOTA Shikimate kinase OS=Moorella thermoacetica (strain ATCC 39073)
GN=aroK PE=3 SV=1
Length = 173
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ L+G + KT +G+ LA L + + D+D++V E G + F E+ +++ E
Sbjct: 4 NIVLIGFMGSGKTTVGRLLARDLGWSFLDTDTMVEERLG-LPVKEIFAREGEEFFREVEK 62
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGIS-LWIDVPPGMVARMDHSGFPESEVL 213
E + ++++ + V+ G GAV N+ LLR G +W+ V P + +G +S L
Sbjct: 63 EAVARVATARQAVIATGGGAVLCGVNVKLLREGNKVVWLQVRPETA--LKRAGLDDSRPL 120
Query: 214 PQ------LFALYKEMRDGYATADVTV 234
Q + AL + YA AD+ +
Sbjct: 121 LQGREPRDIAALLRRREPYYAFADIYI 147
>sp|Q6NH03|AROK_CORDI Shikimate kinase OS=Corynebacterium diphtheriae (strain ATCC 700971
/ NCTC 13129 / Biotype gravis) GN=aroK PE=3 SV=1
Length = 173
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
V LVG + KT +G+ LA+AL DSD L+ E G+ F E E ++ E E
Sbjct: 9 VVLVGPPGSGKTTIGRRLANALNTSVVDSDVLI-EQLQGKPCGVVFAELGEPNFRDLEAE 67
Query: 156 VLK-QLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVAR----------MDH 204
V+ L++ G VV G GAV + + LR I +W+DV R +D
Sbjct: 68 VIDFALTTAG--VVSLGGGAVTTESVRQKLRAQIVVWVDVSAAEGVRRTAVENSRPLLDT 125
Query: 205 SGFPE--SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGY 245
+ E SE+L Q YKE+ D A D Q VA LG+
Sbjct: 126 TNPLERYSELLAQRRDFYKEVADYRAHTDGRSPQQIVADILGF 168
>sp|Q8J294|ARO1_THACU Pentafunctional AROM polypeptide OS=Thanatephorus cucumeris PE=3
SV=1
Length = 1618
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ +VGM A KTH+G A +L + + D+D VFE GE ++ R ++QAE+
Sbjct: 896 TIIIVGMRGAGKTHIGGIAAASLGWKFIDADH-VFEGRTGELVSQYVRSKGWTAFRQAES 954
Query: 155 EVLKQL--SSMGRLVVCAGNGAVQSSANLALL 184
++++ L + R ++ G G V+S N ALL
Sbjct: 955 QIIQDLLAENPTRTIISTGGGIVESPLNRALL 986
>sp|Q8XV61|AROK_RALSO Shikimate kinase OS=Ralstonia solanacearum (strain GMI1000) GN=aroK
PE=3 SV=1
Length = 190
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
++VF VG+ A KT +G+ +A L +FDSD + EA G F E G++ E
Sbjct: 4 SNVFFVGLMGAGKTTVGRAVARRLDLPFFDSDHEI-EARCGVRVPVIFEHEGEMGFRDRE 62
Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPP 196
T+++ +L++ +VV G GAV N A LR G +++ P
Sbjct: 63 TQMIDELTARHGVVVATGGGAVLRPENRAFLRERGTVIYLRANP 106
>sp|C4LB08|AROK_TOLAT Shikimate kinase OS=Tolumonas auensis (strain DSM 9187 / TA4)
GN=aroK PE=3 SV=1
Length = 172
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FL+G A K+ +GK+L++ L +DSD + E G A F E+G+++ E
Sbjct: 6 NIFLIGPMGAGKSTIGKYLSETLHMDLYDSDQEI-ERRTGADIAWVFDVEGEEGFRKREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP-PGMVARMD--------H 204
+V+ LS + +V+ G GA++S L GI ++++ P +AR
Sbjct: 65 QVISDLSELQGIVLATGGGAIKSPLTRNRLSARGIVVYLETPIEKQLARTQRDKRRPLLR 124
Query: 205 SGFPESEVLPQLF----ALYKEMRDGYATADVTVSLQKVASQL 243
+ P EVL +L LY+E+ D Y ++ ++VA+Q+
Sbjct: 125 TEEPPREVLTRLADEREPLYREIAD-YVVRTDELTAKQVATQI 166
>sp|Q1QZY3|AROK_CHRSD Shikimate kinase OS=Chromohalobacter salexigens (strain DSM 3043 /
ATCC BAA-138 / NCIMB 13768) GN=aroK PE=3 SV=1
Length = 180
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ LVG A K+ +G+ LA L+ +FDSD + EA G + A F E G++ ET
Sbjct: 6 TIILVGPMGAGKSTIGRLLAAELQREFFDSDHEI-EARCGANIAWIFDVEGEAGFRDRET 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVAR---------MDH 204
+L++L+S+ +V+ G GAV N LR G +++ R +
Sbjct: 65 AMLRELASLDAVVLATGGGAVMREDNRQALRERGTVVYLATSVEQQIRRTARDRNRPLLR 124
Query: 205 SGFPESEVLPQLFA----LYKEMRDGYATADVTV 234
G PE +VL LFA LY+ ATAD+ V
Sbjct: 125 QGNPE-QVLRDLFAKRDPLYR------ATADLVV 151
>sp|C0QR76|AROK_PERMH Shikimate kinase OS=Persephonella marina (strain DSM 14350 / EX-H1)
GN=aroK PE=3 SV=1
Length = 164
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
+++LVG + K+ +GK LA+ L + + D D + E G+ FRE E ++ E
Sbjct: 3 NIYLVGFMGSGKSTVGKLLAEKLGFRFVDIDQEI-EKEEGKKIKDIFREKGESYFRDLEK 61
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARMDHSGFPESEVL 213
++++ LVV G G S N+ ++ +G +W+D P V G E +L
Sbjct: 62 RMIERFLGSKNLVVSTGGGLGADSENMRKMKENGTVIWLDTPLETVFER-CKGDDERPLL 120
Query: 214 ----PQLFALYKEMRDGYATADVTVSLQ 237
++ L+++ + YA AD+ +S +
Sbjct: 121 KKNRKEIKELFEKRKKIYAQADIRISTE 148
>sp|Q31DP8|AROK_THICR Shikimate kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=aroK
PE=3 SV=1
Length = 174
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
S+FLVG A K+ +G+FLAD L Y + DSD V E G + F E G++ E
Sbjct: 5 SIFLVGPMGAGKSTVGRFLADKLHYQFLDSDQ-VIEDKTGATIPMIFDIEGESGFRAREK 63
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP-PGMVARMDH-------- 204
+ L+ +V+ G GA+ + N LR G +++ +V R H
Sbjct: 64 AAIDDLTQQSEIVLATGGGAILNPENRKNLRSRGFVVYLKSSVDSLVQRTRHDRNRPLLQ 123
Query: 205 SGFPESEVLPQLFA----LYKEMRDGYATADVTVSLQKVASQL 243
+ PE +VL +L LY+E+ D + VS+ +V Q+
Sbjct: 124 TENPE-QVLRKLIEERGPLYEEVADLVIQTE-QVSVHRVVKQI 164
>sp|Q3JEG4|AROK_NITOC Shikimate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=aroK PE=3 SV=1
Length = 190
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++FLVG + KT +G++LA ++DSD + E+ G S F E G++Q E
Sbjct: 5 NIFLVGPMGSGKTTIGRYLARITGKNFYDSDREI-ESRTGVSIPVIFEIEGESGFRQREC 63
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSAN-LALLRHGISLWIDVPPGMVAR 201
+++ +L + +V+ G GAV ++ N L + GI +++ PP + R
Sbjct: 64 KIIAELVQLNNIVLATGGGAVLAAENRRELSQRGIVVYLYAPPKQLYR 111
>sp|A8MFK5|AROK_ALKOO Shikimate kinase OS=Alkaliphilus oremlandii (strain OhILAs) GN=aroK
PE=3 SV=1
Length = 169
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
++ LVG KT LGK LAD L Y + D D L E S ++ FR E ++Q E+
Sbjct: 4 NIVLVGFMAVGKTTLGKLLADQLDYNFIDLD-LFIEKKESMSISEIFRLKGEAYFRQKES 62
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVPPGMV 199
E L LS + + V+ G G V S N + L+ G ++++ P +
Sbjct: 63 EALDLLSDVEQSVIATGGGTVISEENRSKLKQIGRVIYLEAEPSWI 108
>sp|Q3SM89|AROK_THIDA Shikimate kinase OS=Thiobacillus denitrificans (strain ATCC 25259)
GN=aroK PE=3 SV=1
Length = 183
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQ 151
K +++LVG+ A KT +G+ LA ++DSD + EA G F E G+++
Sbjct: 3 KRDNLYLVGLMGAGKTTVGRLLAKHYGCTFYDSDHEI-EARTGVKIPVIFEIEGEAGFRR 61
Query: 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVA---RMD---- 203
E V+ +L+++ +V+ G GAV S AN LR +G+ +++ P + R D
Sbjct: 62 REEAVIAELTTLSGIVLATGGGAVLSPANREHLRTNGLVIYLRGSPEQLCERTRNDRNRP 121
Query: 204 --HSGFPES---EVLPQLFALYKEMRDGYATADVTV--SLQKVA--SQLGYDDLDAVTTE 254
+G P + E+ Q +Y+E+ ADVTV + Q VA +++ Y LD + E
Sbjct: 122 LLQTGNPLAKLRELYQQRDPIYREL------ADVTVDTARQSVAGMTRVLYGKLDLLKGE 175
>sp|Q74BL5|AROK_GEOSL Shikimate kinase OS=Geobacter sulfurreducens (strain ATCC 51573 /
DSM 12127 / PCA) GN=aroK PE=3 SV=1
Length = 175
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA 152
G +V L G K+ +GK LA L Y + D D+L+ E AG S + F E+ +++
Sbjct: 7 GRNVVLTGFMGTGKSTVGKLLARRLGYRFSDLDALIVERAG-ISINEIFERYGEQRFREL 65
Query: 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRH 186
ETE ++ L + VV G GAV + N LLR
Sbjct: 66 ETEAIRSLGGVSGRVVATGGGAVIAPRNRVLLRE 99
>sp|B0V8M8|AROK_ACIBY Shikimate kinase OS=Acinetobacter baumannii (strain AYE) GN=aroK
PE=3 SV=1
Length = 180
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
+++LVG A KT +G+ LA+ L + DSD + E G + F + E G++ ET
Sbjct: 11 NIYLVGPMGAGKTTVGRHLAELLGREFLDSDHEI-ERKTGATIPWIFEKEGEVGFRTRET 69
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVP 195
VL +L+S LV+ G GA+ + N L+ GI +++ P
Sbjct: 70 VVLNELTSRKALVLATGGGAITQAPNREFLKQRGIVVYLYTP 111
>sp|B0VQ33|AROK_ACIBS Shikimate kinase OS=Acinetobacter baumannii (strain SDF) GN=aroK
PE=3 SV=1
Length = 180
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
+++LVG A KT +G+ LA+ L + DSD + E G + F + E G++ ET
Sbjct: 11 NIYLVGPMGAGKTTVGRHLAELLGREFLDSDHEI-ERKTGATIPWIFEKEGEVGFRTRET 69
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRH-GISLWIDVP 195
VL +L+S LV+ G GA+ + N L+ GI +++ P
Sbjct: 70 VVLNELTSRKALVLATGGGAITQAPNREFLKQRGIVVYLYTP 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,347,783
Number of Sequences: 539616
Number of extensions: 3449263
Number of successful extensions: 13593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 13188
Number of HSP's gapped (non-prelim): 492
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)