Query 023749
Match_columns 278
No_of_seqs 225 out of 1561
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 06:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02199 shikimate kinase 100.0 1.5E-36 3.3E-41 278.5 22.4 213 54-269 64-291 (303)
2 COG0703 AroK Shikimate kinase 100.0 6E-34 1.3E-38 242.9 19.1 162 93-268 2-170 (172)
3 PRK13948 shikimate kinase; Pro 100.0 1.2E-30 2.7E-35 225.8 20.4 166 90-268 7-177 (182)
4 PRK13949 shikimate kinase; Pro 100.0 1.4E-28 3E-33 210.4 18.7 158 94-264 2-169 (169)
5 PRK13946 shikimate kinase; Pro 100.0 2.1E-27 4.6E-32 205.1 20.4 169 89-270 6-180 (184)
6 PRK00625 shikimate kinase; Pro 100.0 1.6E-27 3.4E-32 204.9 19.4 163 94-264 1-171 (173)
7 PRK05057 aroK shikimate kinase 100.0 2.3E-27 4.9E-32 203.3 20.0 162 92-266 3-171 (172)
8 PRK14021 bifunctional shikimat 100.0 2.4E-27 5.3E-32 235.6 19.3 162 92-266 5-176 (542)
9 PRK13947 shikimate kinase; Pro 100.0 1.2E-26 2.7E-31 196.4 19.5 159 94-265 2-167 (171)
10 PF01202 SKI: Shikimate kinase 99.9 6.4E-27 1.4E-31 197.5 13.8 151 102-265 1-158 (158)
11 PRK00131 aroK shikimate kinase 99.9 6.4E-25 1.4E-29 184.9 20.5 163 91-266 2-171 (175)
12 PRK03731 aroL shikimate kinase 99.9 9.1E-24 2E-28 179.2 19.5 158 94-266 3-170 (171)
13 PRK08154 anaerobic benzoate ca 99.9 1E-23 2.3E-28 196.3 19.9 168 92-272 132-307 (309)
14 PRK13951 bifunctional shikimat 99.9 2.8E-23 6.1E-28 204.1 19.0 154 94-261 1-156 (488)
15 cd00464 SK Shikimate kinase (S 99.9 1.3E-22 2.8E-27 168.2 16.1 147 95-254 1-153 (154)
16 PRK04182 cytidylate kinase; Pr 99.7 5.9E-17 1.3E-21 137.3 15.9 155 94-269 1-176 (180)
17 PRK03839 putative kinase; Prov 99.7 7.1E-17 1.5E-21 138.2 13.1 150 94-269 1-156 (180)
18 PRK14532 adenylate kinase; Pro 99.7 9E-16 2E-20 132.1 15.4 157 94-266 1-187 (188)
19 PRK05541 adenylylsulfate kinas 99.7 3.8E-16 8.3E-21 133.2 11.1 160 91-268 5-174 (176)
20 PRK05537 bifunctional sulfate 99.7 3.5E-16 7.7E-21 156.5 10.3 157 92-266 391-562 (568)
21 PRK10078 ribose 1,5-bisphospho 99.7 8.9E-16 1.9E-20 132.5 11.3 158 92-268 1-178 (186)
22 PRK06762 hypothetical protein; 99.7 3.6E-15 7.8E-20 125.8 14.6 152 92-265 1-163 (166)
23 PRK09169 hypothetical protein; 99.6 1.3E-15 2.8E-20 165.6 14.3 148 85-236 2102-2263(2316)
24 PRK13975 thymidylate kinase; P 99.6 2.5E-15 5.5E-20 129.7 12.0 160 93-270 2-194 (196)
25 TIGR02173 cyt_kin_arch cytidyl 99.6 2.3E-14 5E-19 120.6 16.4 151 94-264 1-170 (171)
26 PRK14530 adenylate kinase; Pro 99.6 3.1E-14 6.8E-19 125.6 17.4 107 92-202 2-122 (215)
27 COG1102 Cmk Cytidylate kinase 99.6 2.7E-14 5.8E-19 120.6 14.6 152 94-267 1-173 (179)
28 TIGR01313 therm_gnt_kin carboh 99.6 1.1E-13 2.5E-18 116.3 16.4 149 96-265 1-162 (163)
29 COG0283 Cmk Cytidylate kinase 99.6 1E-13 2.3E-18 122.0 16.3 166 94-268 5-221 (222)
30 PRK00889 adenylylsulfate kinas 99.6 1.7E-14 3.8E-19 122.9 10.6 157 92-266 3-170 (175)
31 PRK03846 adenylylsulfate kinas 99.6 3.3E-14 7.1E-19 124.0 11.4 157 91-266 22-192 (198)
32 KOG3354 Gluconate kinase [Carb 99.6 1.9E-13 4.1E-18 114.8 15.2 154 95-267 14-189 (191)
33 PRK13477 bifunctional pantoate 99.5 3.1E-13 6.7E-18 133.5 18.9 160 91-269 282-506 (512)
34 PRK01184 hypothetical protein; 99.5 3.3E-13 7.3E-18 115.7 16.8 157 94-267 2-179 (184)
35 TIGR01359 UMP_CMP_kin_fam UMP- 99.5 5.6E-13 1.2E-17 113.9 17.4 153 95-264 1-182 (183)
36 COG3265 GntK Gluconate kinase 99.5 2.5E-13 5.5E-18 113.2 14.4 149 99-267 1-160 (161)
37 TIGR01360 aden_kin_iso1 adenyl 99.5 2.4E-13 5.2E-18 116.1 14.8 156 93-265 3-186 (188)
38 COG1936 Predicted nucleotide k 99.5 3.2E-13 6.9E-18 115.3 12.6 147 94-266 1-156 (180)
39 PRK02496 adk adenylate kinase; 99.5 1.4E-12 3E-17 112.0 16.6 154 94-265 2-183 (184)
40 PRK06217 hypothetical protein; 99.5 9.2E-13 2E-17 113.4 15.3 98 94-202 2-100 (183)
41 cd00227 CPT Chloramphenicol (C 99.5 1.1E-12 2.4E-17 112.1 15.7 154 92-264 1-174 (175)
42 PRK13808 adenylate kinase; Pro 99.5 1.3E-12 2.9E-17 122.7 17.4 157 94-268 1-195 (333)
43 PRK14531 adenylate kinase; Pro 99.5 1.8E-12 3.9E-17 111.7 16.7 155 93-264 2-182 (183)
44 PRK14733 coaE dephospho-CoA ki 99.5 5.3E-13 1.1E-17 117.7 13.6 160 92-266 5-198 (204)
45 PLN02674 adenylate kinase 99.5 1.5E-12 3.2E-17 117.8 15.6 106 91-202 29-154 (244)
46 COG0529 CysC Adenylylsulfate k 99.5 2.1E-13 4.6E-18 116.8 9.2 158 91-267 21-192 (197)
47 PRK00081 coaE dephospho-CoA ki 99.5 6.2E-13 1.3E-17 115.9 12.1 155 94-266 3-193 (194)
48 TIGR03574 selen_PSTK L-seryl-t 99.5 1.6E-12 3.5E-17 117.1 14.5 154 95-268 1-171 (249)
49 PRK00279 adk adenylate kinase; 99.5 3.6E-12 7.7E-17 112.4 16.2 105 94-202 1-123 (215)
50 PLN02200 adenylate kinase fami 99.4 5.5E-12 1.2E-16 113.3 17.5 160 92-269 42-227 (234)
51 PRK14730 coaE dephospho-CoA ki 99.4 2.6E-12 5.6E-17 112.3 13.1 155 94-265 2-193 (195)
52 PRK08356 hypothetical protein; 99.4 1.3E-11 2.8E-16 107.4 16.7 155 93-266 5-192 (195)
53 TIGR00455 apsK adenylylsulfate 99.4 1.3E-12 2.9E-17 112.2 10.4 155 92-264 17-184 (184)
54 PRK08233 hypothetical protein; 99.4 5.3E-12 1.1E-16 107.2 13.5 158 92-267 2-178 (182)
55 KOG2004 Mitochondrial ATP-depe 99.4 1E-13 2.2E-18 138.6 3.2 81 43-123 367-468 (906)
56 TIGR02322 phosphon_PhnN phosph 99.4 3.8E-12 8.3E-17 108.6 12.1 156 93-266 1-178 (179)
57 TIGR01351 adk adenylate kinase 99.4 2.2E-11 4.7E-16 107.1 16.8 104 95-202 1-120 (210)
58 PRK14734 coaE dephospho-CoA ki 99.4 5.6E-12 1.2E-16 110.6 12.9 156 94-267 2-195 (200)
59 PRK14527 adenylate kinase; Pro 99.4 4.1E-11 8.9E-16 103.7 18.0 156 92-264 5-190 (191)
60 cd02020 CMPK Cytidine monophos 99.4 1.1E-11 2.3E-16 101.5 13.5 98 95-202 1-99 (147)
61 PRK00023 cmk cytidylate kinase 99.4 3.9E-11 8.4E-16 107.2 17.8 39 92-130 3-41 (225)
62 KOG3347 Predicted nucleotide k 99.4 5.8E-12 1.3E-16 105.3 11.1 150 91-265 5-165 (176)
63 TIGR00017 cmk cytidylate kinas 99.4 3.8E-11 8.2E-16 106.8 17.1 38 93-130 2-39 (217)
64 PRK14528 adenylate kinase; Pro 99.4 6.6E-12 1.4E-16 108.8 11.7 152 94-263 2-185 (186)
65 PLN02422 dephospho-CoA kinase 99.4 1.6E-11 3.5E-16 110.2 14.1 157 94-268 2-196 (232)
66 PRK03333 coaE dephospho-CoA ki 99.4 9.7E-12 2.1E-16 119.7 13.5 158 94-268 2-194 (395)
67 PLN02459 probable adenylate ki 99.3 4.3E-11 9.3E-16 109.1 16.4 105 94-202 30-149 (261)
68 cd02021 GntK Gluconate kinase 99.3 1.2E-11 2.5E-16 102.5 11.5 123 95-224 1-136 (150)
69 TIGR00152 dephospho-CoA kinase 99.3 2.1E-11 4.5E-16 105.3 13.2 146 95-261 1-187 (188)
70 PRK04040 adenylate kinase; Pro 99.3 4.5E-11 9.8E-16 104.0 15.3 159 93-264 2-187 (188)
71 PRK14526 adenylate kinase; Pro 99.3 7.5E-11 1.6E-15 104.5 16.7 105 94-202 1-118 (211)
72 PRK05416 glmZ(sRNA)-inactivati 99.3 3.6E-11 7.8E-16 111.3 14.4 142 92-266 5-160 (288)
73 PTZ00451 dephospho-CoA kinase; 99.3 5.3E-11 1.1E-15 107.7 14.3 159 94-266 2-207 (244)
74 PRK05506 bifunctional sulfate 99.3 1.4E-11 3.1E-16 125.0 11.8 157 92-266 459-628 (632)
75 PRK11545 gntK gluconate kinase 99.3 1.1E-10 2.4E-15 99.1 15.3 147 99-266 1-160 (163)
76 PTZ00088 adenylate kinase 1; P 99.3 1.3E-10 2.8E-15 104.2 16.3 107 92-202 5-126 (229)
77 PRK14529 adenylate kinase; Pro 99.3 1.9E-10 4E-15 102.9 16.1 105 94-202 1-122 (223)
78 PRK11860 bifunctional 3-phosph 99.3 7.4E-11 1.6E-15 120.4 15.2 162 93-266 442-655 (661)
79 PRK14731 coaE dephospho-CoA ki 99.3 1.5E-10 3.3E-15 102.0 15.3 156 93-267 5-203 (208)
80 KOG3079 Uridylate kinase/adeny 99.3 3.4E-11 7.4E-16 103.7 10.7 161 92-267 7-194 (195)
81 PRK08118 topology modulation p 99.3 2.2E-11 4.7E-16 103.9 9.3 92 94-202 2-95 (167)
82 COG1428 Deoxynucleoside kinase 99.3 1.4E-10 3E-15 102.1 14.5 163 93-268 4-210 (216)
83 PRK09825 idnK D-gluconate kina 99.3 4.7E-10 1E-14 96.6 17.6 155 92-268 2-170 (176)
84 PF13671 AAA_33: AAA domain; P 99.3 2.7E-11 5.9E-16 98.9 9.3 109 95-208 1-121 (143)
85 PF01583 APS_kinase: Adenylyls 99.2 5.1E-12 1.1E-16 107.0 4.4 109 92-206 1-120 (156)
86 cd01672 TMPK Thymidine monopho 99.2 2.7E-10 5.9E-15 97.3 15.2 30 94-123 1-33 (200)
87 cd01428 ADK Adenylate kinase ( 99.2 1.6E-10 3.5E-15 99.2 13.2 107 95-205 1-125 (194)
88 PRK09518 bifunctional cytidyla 99.2 9.2E-11 2E-15 120.7 13.8 79 186-269 155-234 (712)
89 PRK14732 coaE dephospho-CoA ki 99.2 1.6E-10 3.5E-15 101.2 12.9 154 95-266 1-190 (196)
90 COG0237 CoaE Dephospho-CoA kin 99.2 9.8E-11 2.1E-15 103.1 11.3 161 93-268 2-194 (201)
91 PHA02530 pseT polynucleotide k 99.2 2.5E-10 5.4E-15 105.0 14.3 131 93-224 2-141 (300)
92 PRK06547 hypothetical protein; 99.2 4E-11 8.7E-16 103.0 8.4 113 91-205 13-138 (172)
93 cd02022 DPCK Dephospho-coenzym 99.2 7.5E-11 1.6E-15 101.3 9.7 38 95-133 1-38 (179)
94 COG0466 Lon ATP-dependent Lon 99.2 6.3E-12 1.4E-16 126.2 3.5 78 47-124 283-381 (782)
95 PF01121 CoaE: Dephospho-CoA k 99.2 4.1E-11 8.8E-16 103.8 7.9 139 94-237 1-175 (180)
96 PRK13973 thymidylate kinase; P 99.2 1.9E-09 4.1E-14 95.2 16.7 159 92-268 2-208 (213)
97 TIGR03575 selen_PSTK_euk L-ser 99.1 1.7E-10 3.7E-15 108.9 10.1 95 96-202 2-118 (340)
98 PF07931 CPT: Chloramphenicol 99.1 4.2E-10 9E-15 97.0 11.4 151 93-264 1-173 (174)
99 COG0563 Adk Adenylate kinase a 99.1 1.2E-09 2.7E-14 94.4 14.3 159 94-264 1-177 (178)
100 PRK00698 tmk thymidylate kinas 99.1 1.3E-09 2.7E-14 94.4 14.3 26 92-117 2-27 (205)
101 PF03668 ATP_bind_2: P-loop AT 99.1 4.3E-10 9.3E-15 103.3 11.8 141 94-267 2-157 (284)
102 PLN02924 thymidylate kinase 99.1 2.3E-09 5.1E-14 95.6 14.7 171 91-276 14-218 (220)
103 PRK05480 uridine/cytidine kina 99.1 1.5E-09 3.2E-14 95.1 12.2 38 92-129 5-45 (209)
104 PRK12269 bifunctional cytidyla 99.1 2E-09 4.3E-14 112.3 14.2 40 92-131 33-72 (863)
105 TIGR00041 DTMP_kinase thymidyl 99.1 4.7E-09 1E-13 90.4 14.3 28 92-119 2-29 (195)
106 PLN02842 nucleotide kinase 99.0 4.4E-09 9.5E-14 103.7 15.0 102 97-202 1-117 (505)
107 PF13207 AAA_17: AAA domain; P 99.0 2.3E-10 4.9E-15 91.0 4.8 34 95-128 1-34 (121)
108 PRK07261 topology modulation p 99.0 8.9E-10 1.9E-14 94.2 8.3 94 94-202 1-95 (171)
109 KOG0635 Adenosine 5'-phosphosu 99.0 1.4E-09 3E-14 91.4 8.9 159 91-267 29-201 (207)
110 cd02023 UMPK Uridine monophosp 99.0 4.3E-09 9.2E-14 91.3 12.0 35 95-129 1-38 (198)
111 PRK06696 uridine kinase; Valid 99.0 4.7E-09 1E-13 93.2 12.5 37 92-128 21-62 (223)
112 COG2019 AdkA Archaeal adenylat 99.0 2.6E-08 5.6E-13 85.0 16.2 161 93-266 4-188 (189)
113 PTZ00322 6-phosphofructo-2-kin 99.0 1.6E-10 3.5E-15 118.0 2.7 143 92-235 214-381 (664)
114 cd02030 NDUO42 NADH:Ubiquinone 99.0 3.6E-08 7.7E-13 87.5 15.9 66 186-262 143-217 (219)
115 PRK13976 thymidylate kinase; P 98.9 7.4E-08 1.6E-12 85.3 17.4 75 186-271 125-206 (209)
116 COG1660 Predicted P-loop-conta 98.9 7.4E-09 1.6E-13 93.7 11.1 142 94-268 2-159 (286)
117 KOG3220 Similar to bacterial d 98.9 1.1E-08 2.4E-13 89.5 11.3 152 95-265 3-193 (225)
118 COG4088 Predicted nucleotide k 98.9 1.8E-08 3.9E-13 88.8 12.2 137 94-235 2-155 (261)
119 PF00406 ADK: Adenylate kinase 98.9 1.2E-08 2.5E-13 84.9 10.2 101 98-202 1-119 (151)
120 cd02027 APSK Adenosine 5'-phos 98.9 3.6E-09 7.8E-14 88.5 6.4 105 95-205 1-116 (149)
121 COG0645 Predicted kinase [Gene 98.9 6.3E-08 1.4E-12 82.7 13.2 131 94-228 2-148 (170)
122 PRK12339 2-phosphoglycerate ki 98.8 9.2E-08 2E-12 84.0 14.5 39 92-130 2-40 (197)
123 PRK00300 gmk guanylate kinase; 98.8 4E-08 8.6E-13 85.4 12.0 27 92-118 4-30 (205)
124 PRK10787 DNA-binding ATP-depen 98.8 2.1E-09 4.5E-14 111.6 4.0 77 47-123 282-379 (784)
125 PLN02165 adenylate isopentenyl 98.8 1.3E-08 2.8E-13 95.8 9.0 132 89-221 39-213 (334)
126 PRK14737 gmk guanylate kinase; 98.8 4.7E-08 1E-12 84.9 11.7 64 188-266 118-184 (186)
127 KOG3877 NADH:ubiquinone oxidor 98.8 1.1E-08 2.4E-13 93.5 7.7 55 78-133 57-114 (393)
128 PF00485 PRK: Phosphoribulokin 98.8 7.2E-09 1.6E-13 90.0 5.9 24 95-118 1-24 (194)
129 PF13189 Cytidylate_kin2: Cyti 98.8 2E-08 4.4E-13 86.4 8.2 134 95-236 1-177 (179)
130 PTZ00301 uridine kinase; Provi 98.8 1.2E-07 2.6E-12 84.1 12.8 37 93-129 3-46 (210)
131 COG0125 Tmk Thymidylate kinase 98.8 1.8E-07 3.8E-12 82.9 13.6 71 186-269 128-206 (208)
132 TIGR03263 guanyl_kin guanylate 98.8 5.5E-08 1.2E-12 82.7 9.9 28 93-120 1-28 (180)
133 PRK12338 hypothetical protein; 98.7 4.4E-07 9.6E-12 85.1 16.0 39 92-130 3-42 (319)
134 PRK07933 thymidylate kinase; V 98.7 1.7E-07 3.7E-12 83.0 12.5 25 94-118 1-25 (213)
135 COG0572 Udk Uridine kinase [Nu 98.7 7.6E-08 1.7E-12 85.5 10.1 36 94-129 9-47 (218)
136 cd01673 dNK Deoxyribonucleosid 98.7 3.1E-07 6.8E-12 79.1 13.0 29 95-123 1-29 (193)
137 PRK09270 nucleoside triphospha 98.7 1.9E-07 4.1E-12 83.3 11.8 142 92-237 32-221 (229)
138 PF08433 KTI12: Chromatin asso 98.7 3.2E-07 7E-12 84.3 13.4 150 94-260 2-169 (270)
139 PRK13974 thymidylate kinase; P 98.7 2.3E-06 4.9E-11 75.6 17.6 27 92-118 2-28 (212)
140 TIGR00235 udk uridine kinase. 98.7 4.4E-07 9.6E-12 79.5 13.0 37 92-128 5-44 (207)
141 PF13238 AAA_18: AAA domain; P 98.7 4.4E-08 9.5E-13 77.8 5.8 23 96-118 1-23 (129)
142 PRK07667 uridine kinase; Provi 98.6 3.9E-07 8.4E-12 79.3 11.3 38 93-130 17-59 (193)
143 PRK14738 gmk guanylate kinase; 98.6 4.8E-07 1E-11 79.6 10.7 28 89-116 9-36 (206)
144 TIGR01663 PNK-3'Pase polynucle 98.6 4.3E-07 9.4E-12 90.5 11.2 94 92-207 368-470 (526)
145 smart00072 GuKc Guanylate kina 98.6 1.1E-06 2.4E-11 75.6 12.4 25 93-117 2-26 (184)
146 TIGR00763 lon ATP-dependent pr 98.6 4E-08 8.7E-13 102.2 3.8 77 47-123 280-377 (775)
147 PRK15453 phosphoribulokinase; 98.5 5.9E-07 1.3E-11 82.9 10.9 38 92-129 4-46 (290)
148 PF00625 Guanylate_kin: Guanyl 98.5 2.4E-07 5.2E-12 79.6 7.5 27 92-118 1-27 (183)
149 cd02026 PRK Phosphoribulokinas 98.5 2.8E-07 6E-12 84.8 8.1 34 95-128 1-37 (273)
150 cd02024 NRK1 Nicotinamide ribo 98.5 3.7E-07 8E-12 79.6 8.1 35 95-129 1-36 (187)
151 PLN02348 phosphoribulokinase 98.5 2.7E-07 5.9E-12 88.6 7.7 27 92-118 48-74 (395)
152 PRK07429 phosphoribulokinase; 98.4 1.6E-06 3.4E-11 81.8 11.2 37 92-128 7-46 (327)
153 COG0194 Gmk Guanylate kinase [ 98.4 3.1E-06 6.7E-11 73.5 11.7 29 92-120 3-31 (191)
154 cd02029 PRK_like Phosphoribulo 98.4 2E-06 4.2E-11 79.0 10.4 35 95-129 1-40 (277)
155 COG3709 Uncharacterized compon 98.4 8.2E-06 1.8E-10 69.5 13.3 157 92-268 4-184 (192)
156 PRK12337 2-phosphoglycerate ki 98.4 6.5E-06 1.4E-10 80.7 13.9 40 92-131 254-294 (475)
157 PF02223 Thymidylate_kin: Thym 98.4 6.3E-06 1.4E-10 70.6 12.4 21 98-118 1-21 (186)
158 cd02028 UMPK_like Uridine mono 98.3 1E-06 2.2E-11 75.9 6.6 35 95-129 1-40 (179)
159 COG3896 Chloramphenicol 3-O-ph 98.3 8.8E-06 1.9E-10 69.2 11.9 170 79-265 9-204 (205)
160 PRK04220 2-phosphoglycerate ki 98.3 1.8E-05 4E-10 73.7 15.1 44 86-129 85-129 (301)
161 COG2074 2-phosphoglycerate kin 98.3 1.4E-05 3.1E-10 72.4 13.7 41 89-129 85-126 (299)
162 COG4639 Predicted kinase [Gene 98.3 1.4E-05 2.9E-10 67.7 12.4 108 93-207 2-119 (168)
163 PRK05439 pantothenate kinase; 98.3 8.9E-06 1.9E-10 76.2 11.6 36 93-128 86-128 (311)
164 TIGR00390 hslU ATP-dependent p 98.2 1.9E-06 4.2E-11 83.5 6.3 61 89-150 43-106 (441)
165 PHA03132 thymidine kinase; Pro 98.2 9.7E-06 2.1E-10 81.5 11.0 30 92-121 256-285 (580)
166 cd02025 PanK Pantothenate kina 98.2 5.9E-06 1.3E-10 73.6 7.4 34 95-128 1-41 (220)
167 TIGR00554 panK_bact pantothena 98.1 1.5E-05 3.3E-10 74.0 10.2 37 92-128 61-104 (290)
168 PF06414 Zeta_toxin: Zeta toxi 98.1 1.8E-05 3.8E-10 69.0 9.6 43 87-129 9-54 (199)
169 KOG4238 Bifunctional ATP sulfu 98.1 3.8E-06 8.3E-11 79.5 4.6 162 89-268 46-222 (627)
170 PHA00729 NTP-binding motif con 98.0 4.7E-05 1E-09 68.3 10.6 41 78-119 3-43 (226)
171 PF00004 AAA: ATPase family as 97.9 7.6E-06 1.6E-10 65.1 3.5 29 96-124 1-29 (132)
172 PLN02318 phosphoribulokinase/u 97.9 7E-05 1.5E-09 75.6 11.0 53 75-127 45-100 (656)
173 PRK05201 hslU ATP-dependent pr 97.9 2.3E-05 5E-10 76.2 7.3 37 90-126 47-83 (443)
174 KOG3327 Thymidylate kinase/ade 97.9 7.2E-05 1.6E-09 65.0 8.9 164 91-274 3-203 (208)
175 PRK00091 miaA tRNA delta(2)-is 97.9 4.8E-05 1E-09 71.2 8.1 36 92-127 3-38 (307)
176 KOG0733 Nuclear AAA ATPase (VC 97.9 4.5E-05 9.8E-10 76.5 8.0 112 89-202 219-368 (802)
177 KOG0744 AAA+-type ATPase [Post 97.8 0.00016 3.4E-09 68.0 10.7 31 93-123 177-207 (423)
178 cd02019 NK Nucleoside/nucleoti 97.8 1.9E-05 4E-10 57.5 3.3 23 95-117 1-23 (69)
179 PLN02772 guanylate kinase 97.8 0.00032 6.9E-09 67.7 12.1 26 92-117 134-159 (398)
180 TIGR00150 HI0065_YjeE ATPase, 97.8 5.8E-05 1.3E-09 62.4 6.0 43 78-120 6-49 (133)
181 KOG1384 tRNA delta(2)-isopente 97.7 0.0002 4.2E-09 67.2 9.8 129 92-222 6-177 (348)
182 PF01591 6PF2K: 6-phosphofruct 97.7 0.0002 4.4E-09 64.1 9.5 56 93-148 12-72 (222)
183 KOG0730 AAA+-type ATPase [Post 97.7 0.00022 4.8E-09 72.0 10.5 66 78-144 440-523 (693)
184 KOG0739 AAA+-type ATPase [Post 97.7 0.0009 1.9E-08 62.5 12.8 65 67-133 131-208 (439)
185 PLN02840 tRNA dimethylallyltra 97.7 0.0001 2.3E-09 71.6 7.0 37 91-127 19-55 (421)
186 COG1072 CoaA Panthothenate kin 97.6 8.8E-05 1.9E-09 68.1 5.4 27 92-118 81-107 (283)
187 smart00382 AAA ATPases associa 97.6 6.7E-05 1.4E-09 58.5 3.6 28 93-120 2-29 (148)
188 TIGR01650 PD_CobS cobaltochela 97.6 0.00012 2.5E-09 69.1 5.7 34 89-122 60-93 (327)
189 PLN02748 tRNA dimethylallyltra 97.5 0.00021 4.6E-09 70.5 7.1 35 92-126 21-55 (468)
190 TIGR00174 miaA tRNA isopenteny 97.5 0.00026 5.7E-09 65.7 7.1 33 95-127 1-33 (287)
191 TIGR02640 gas_vesic_GvpN gas v 97.5 0.00016 3.5E-09 65.8 5.7 43 78-122 8-50 (262)
192 cd00009 AAA The AAA+ (ATPases 97.5 0.00024 5.1E-09 56.1 5.7 39 85-123 11-52 (151)
193 PF07728 AAA_5: AAA domain (dy 97.5 0.00013 2.9E-09 59.3 4.2 28 95-122 1-28 (139)
194 PF13521 AAA_28: AAA domain; P 97.5 0.0001 2.3E-09 61.8 3.5 27 95-122 1-27 (163)
195 PRK06761 hypothetical protein; 97.4 0.00011 2.4E-09 68.0 3.8 31 92-122 2-32 (282)
196 KOG3078 Adenylate kinase [Nucl 97.4 0.00062 1.4E-08 61.3 8.4 41 92-132 14-54 (235)
197 PF05496 RuvB_N: Holliday junc 97.4 0.00015 3.2E-09 65.1 3.9 31 93-123 50-80 (233)
198 PF03215 Rad17: Rad17 cell cyc 97.4 0.00022 4.8E-09 71.2 5.4 58 66-123 7-75 (519)
199 PRK05342 clpX ATP-dependent pr 97.3 0.0002 4.3E-09 69.7 4.4 36 91-126 106-141 (412)
200 TIGR02881 spore_V_K stage V sp 97.3 0.00029 6.2E-09 64.0 4.9 26 92-117 41-66 (261)
201 PRK08099 bifunctional DNA-bind 97.3 0.0031 6.8E-08 61.1 12.3 33 91-123 217-249 (399)
202 KOG0731 AAA+-type ATPase conta 97.3 0.00091 2E-08 69.1 8.9 47 78-124 317-375 (774)
203 KOG1970 Checkpoint RAD17-RFC c 97.3 0.00026 5.6E-09 70.4 4.6 37 87-123 104-140 (634)
204 COG1618 Predicted nucleotide k 97.3 0.00022 4.8E-09 60.9 3.6 27 92-118 4-30 (179)
205 CHL00181 cbbX CbbX; Provisiona 97.3 0.00041 8.9E-09 64.3 5.5 26 92-117 58-83 (287)
206 PRK05800 cobU adenosylcobinami 97.3 0.00029 6.3E-09 60.4 4.1 33 93-125 1-35 (170)
207 PF02367 UPF0079: Uncharacteri 97.3 0.00038 8.2E-09 56.8 4.4 37 84-120 5-42 (123)
208 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0004 8.7E-09 69.0 5.5 35 91-125 257-291 (489)
209 TIGR02880 cbbX_cfxQ probable R 97.2 0.00045 9.8E-09 63.8 5.3 25 93-117 58-82 (284)
210 PF06068 TIP49: TIP49 C-termin 97.2 0.0004 8.6E-09 66.5 4.8 35 89-123 46-82 (398)
211 TIGR00382 clpX endopeptidase C 97.2 0.00031 6.8E-09 68.3 4.3 34 92-125 115-148 (413)
212 PRK06620 hypothetical protein; 97.2 0.0032 6.9E-08 55.9 10.1 46 78-123 25-74 (214)
213 PRK09087 hypothetical protein; 97.2 0.00096 2.1E-08 59.7 6.8 37 92-128 43-79 (226)
214 PHA02244 ATPase-like protein 97.2 0.00069 1.5E-08 65.0 6.1 47 79-127 107-153 (383)
215 PF13173 AAA_14: AAA domain 97.2 0.00051 1.1E-08 55.5 4.5 37 93-129 2-42 (128)
216 PRK10646 ADP-binding protein; 97.2 0.00084 1.8E-08 56.8 5.8 43 78-120 12-55 (153)
217 PHA03136 thymidine kinase; Pro 97.2 0.0079 1.7E-07 57.7 13.0 25 186-210 192-217 (378)
218 PHA02575 1 deoxynucleoside mon 97.2 0.00052 1.1E-08 61.5 4.7 36 94-130 1-37 (227)
219 COG1220 HslU ATP-dependent pro 97.1 0.00048 1E-08 65.2 4.5 38 86-123 43-80 (444)
220 TIGR01241 FtsH_fam ATP-depende 97.1 0.00072 1.6E-08 67.1 5.9 33 93-125 88-120 (495)
221 PRK04195 replication factor C 97.1 0.00061 1.3E-08 67.4 5.2 47 78-124 20-70 (482)
222 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0007 1.5E-08 59.3 5.0 52 76-127 21-77 (226)
223 KOG3308 Uncharacterized protei 97.1 0.0027 6E-08 56.0 8.5 35 95-129 6-41 (225)
224 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00047 1E-08 65.8 4.0 28 92-119 77-104 (361)
225 KOG2702 Predicted panthothenat 97.1 0.0043 9.4E-08 56.1 9.6 60 51-116 83-142 (323)
226 PRK03992 proteasome-activating 97.1 0.00049 1.1E-08 66.3 4.0 33 92-124 164-196 (389)
227 COG1223 Predicted ATPase (AAA+ 97.0 0.0037 7.9E-08 57.6 8.4 47 78-124 127-182 (368)
228 TIGR01242 26Sp45 26S proteasom 97.0 0.00082 1.8E-08 64.0 4.4 33 92-124 155-187 (364)
229 PF07726 AAA_3: ATPase family 97.0 0.00053 1.1E-08 56.5 2.6 29 95-123 1-29 (131)
230 KOG3062 RNA polymerase II elon 97.0 0.0057 1.2E-07 55.0 9.2 24 94-117 2-25 (281)
231 PLN00020 ribulose bisphosphate 96.9 0.0018 3.9E-08 62.3 6.4 41 93-133 148-190 (413)
232 PRK08084 DNA replication initi 96.9 0.0086 1.9E-07 53.7 10.5 47 80-126 32-83 (235)
233 PRK11784 tRNA 2-selenouridine 96.9 0.0054 1.2E-07 58.4 9.6 106 92-202 140-252 (345)
234 PF03266 NTPase_1: NTPase; In 96.9 0.00086 1.9E-08 57.4 3.7 26 95-120 1-29 (168)
235 TIGR00635 ruvB Holliday juncti 96.9 0.0017 3.7E-08 59.8 6.0 29 93-121 30-58 (305)
236 COG0802 Predicted ATPase or ki 96.9 0.0016 3.5E-08 54.7 5.2 42 78-119 9-51 (149)
237 PTZ00454 26S protease regulato 96.9 0.00093 2E-08 64.7 4.2 33 92-124 178-210 (398)
238 PF07724 AAA_2: AAA domain (Cd 96.9 0.00094 2E-08 57.3 3.7 26 94-119 4-29 (171)
239 COG1219 ClpX ATP-dependent pro 96.9 0.00097 2.1E-08 62.7 3.9 36 90-125 94-129 (408)
240 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0011 2.3E-08 62.6 4.2 38 85-123 155-192 (325)
241 CHL00176 ftsH cell division pr 96.9 0.0015 3.2E-08 66.9 5.5 32 93-124 216-247 (638)
242 cd00820 PEPCK_HprK Phosphoenol 96.9 0.0011 2.4E-08 52.8 3.6 34 92-127 14-47 (107)
243 PRK14729 miaA tRNA delta(2)-is 96.8 0.0036 7.8E-08 58.5 7.5 35 92-127 3-37 (300)
244 COG0714 MoxR-like ATPases [Gen 96.8 0.001 2.3E-08 62.4 3.9 37 87-123 37-73 (329)
245 COG2256 MGS1 ATPase related to 96.8 0.001 2.2E-08 64.0 3.8 34 94-127 49-82 (436)
246 COG1222 RPT1 ATP-dependent 26S 96.8 0.0027 5.8E-08 60.5 6.4 42 92-133 184-227 (406)
247 PRK06893 DNA replication initi 96.8 0.015 3.2E-07 51.9 11.0 35 91-125 37-76 (229)
248 PRK00080 ruvB Holliday junctio 96.8 0.0013 2.8E-08 61.7 4.2 31 92-122 50-80 (328)
249 COG0324 MiaA tRNA delta(2)-iso 96.8 0.0046 9.9E-08 58.0 7.7 36 92-127 2-37 (308)
250 cd00071 GMPK Guanosine monopho 96.8 0.0011 2.4E-08 54.6 3.0 24 95-118 1-24 (137)
251 COG1224 TIP49 DNA helicase TIP 96.8 0.002 4.4E-08 61.4 5.1 35 89-123 61-97 (450)
252 COG5324 Uncharacterized conser 96.8 0.018 3.9E-07 56.8 11.6 33 95-127 376-408 (758)
253 PTZ00361 26 proteosome regulat 96.7 0.0016 3.4E-08 64.0 4.3 32 92-123 216-247 (438)
254 PF02224 Cytidylate_kin: Cytid 96.7 0.005 1.1E-07 52.3 6.8 73 186-262 80-157 (157)
255 TIGR03689 pup_AAA proteasome A 96.7 0.0033 7.1E-08 62.8 6.5 29 92-120 215-243 (512)
256 PLN03025 replication factor C 96.7 0.0027 5.8E-08 59.4 5.5 41 77-117 18-58 (319)
257 PF00910 RNA_helicase: RNA hel 96.7 0.0013 2.7E-08 51.8 2.8 23 96-118 1-23 (107)
258 PF01745 IPT: Isopentenyl tran 96.7 0.0015 3.2E-08 58.3 3.5 34 94-127 2-35 (233)
259 PF13401 AAA_22: AAA domain; P 96.7 0.0015 3.3E-08 51.9 3.3 25 93-117 4-28 (131)
260 PF05729 NACHT: NACHT domain 96.7 0.0016 3.5E-08 53.4 3.5 25 94-118 1-25 (166)
261 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0049 1.1E-07 62.3 7.3 33 92-124 544-576 (802)
262 PRK15455 PrkA family serine pr 96.7 0.0022 4.7E-08 64.8 4.9 41 78-118 82-128 (644)
263 PF03193 DUF258: Protein of un 96.7 0.0018 3.9E-08 55.3 3.7 32 85-116 27-58 (161)
264 COG1126 GlnQ ABC-type polar am 96.7 0.0015 3.3E-08 58.3 3.3 23 92-114 27-49 (240)
265 PF08303 tRNA_lig_kinase: tRNA 96.7 0.0015 3.2E-08 55.9 3.1 33 96-128 2-35 (168)
266 PRK13342 recombination factor 96.6 0.0025 5.4E-08 61.8 5.0 33 92-124 35-67 (413)
267 PRK08903 DnaA regulatory inact 96.6 0.0025 5.4E-08 56.3 4.5 49 80-128 28-82 (227)
268 cd01918 HprK_C HprK/P, the bif 96.6 0.0024 5.2E-08 53.8 4.1 36 91-127 12-47 (149)
269 PRK00771 signal recognition pa 96.6 0.0071 1.5E-07 59.4 7.9 36 92-127 94-134 (437)
270 KOG0734 AAA+-type ATPase conta 96.6 0.0042 9.1E-08 62.0 6.1 39 93-131 337-376 (752)
271 PRK12402 replication factor C 96.5 0.004 8.7E-08 57.8 5.5 42 77-118 20-61 (337)
272 cd03115 SRP The signal recogni 96.5 0.0027 5.9E-08 53.6 3.9 33 95-127 2-39 (173)
273 PF01078 Mg_chelatase: Magnesi 96.5 0.0024 5.1E-08 56.6 3.5 36 81-117 11-46 (206)
274 PF00005 ABC_tran: ABC transpo 96.5 0.0022 4.7E-08 51.7 3.1 26 92-117 10-35 (137)
275 TIGR01425 SRP54_euk signal rec 96.5 0.011 2.3E-07 58.0 8.3 36 93-128 100-140 (429)
276 COG1124 DppF ABC-type dipeptid 96.5 0.0023 4.9E-08 58.0 3.4 24 92-115 32-55 (252)
277 PRK12724 flagellar biosynthesi 96.5 0.0079 1.7E-07 58.7 7.2 37 92-128 222-264 (432)
278 PRK10733 hflB ATP-dependent me 96.5 0.0035 7.5E-08 64.4 5.0 32 93-124 185-216 (644)
279 COG0464 SpoVK ATPases of the A 96.5 0.0026 5.6E-08 62.9 4.0 35 92-126 275-309 (494)
280 PF10662 PduV-EutP: Ethanolami 96.5 0.0023 4.9E-08 53.6 3.0 22 94-115 2-23 (143)
281 PHA02544 44 clamp loader, smal 96.4 0.0054 1.2E-07 56.7 5.7 45 78-122 27-72 (316)
282 COG4619 ABC-type uncharacteriz 96.4 0.0026 5.6E-08 55.1 3.3 24 92-115 28-51 (223)
283 PF13191 AAA_16: AAA ATPase do 96.4 0.0025 5.4E-08 53.5 3.2 30 89-118 20-49 (185)
284 TIGR01243 CDC48 AAA family ATP 96.4 0.0027 5.9E-08 66.0 4.1 33 92-124 486-518 (733)
285 PF00448 SRP54: SRP54-type pro 96.4 0.0028 6.2E-08 55.5 3.6 35 93-127 1-40 (196)
286 PRK13695 putative NTPase; Prov 96.4 0.0032 6.9E-08 53.4 3.7 24 94-117 1-24 (174)
287 TIGR01166 cbiO cobalt transpor 96.4 0.0029 6.2E-08 54.3 3.4 24 92-115 17-40 (190)
288 COG2255 RuvB Holliday junction 96.4 0.003 6.5E-08 58.6 3.7 29 93-121 52-80 (332)
289 TIGR00960 3a0501s02 Type II (G 96.4 0.0028 6.1E-08 55.4 3.4 25 92-116 28-52 (216)
290 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0029 6.3E-08 55.3 3.4 26 92-117 29-54 (218)
291 cd03292 ABC_FtsE_transporter F 96.4 0.003 6.5E-08 55.0 3.5 25 92-116 26-50 (214)
292 TIGR01243 CDC48 AAA family ATP 96.4 0.003 6.4E-08 65.7 3.9 33 92-124 211-243 (733)
293 TIGR02673 FtsE cell division A 96.4 0.003 6.5E-08 55.1 3.4 25 92-116 27-51 (214)
294 cd03269 ABC_putative_ATPase Th 96.4 0.0031 6.8E-08 54.9 3.5 25 92-116 25-49 (210)
295 cd03225 ABC_cobalt_CbiO_domain 96.4 0.0031 6.8E-08 54.9 3.4 25 92-116 26-50 (211)
296 cd03261 ABC_Org_Solvent_Resist 96.3 0.0032 7E-08 55.8 3.4 26 92-117 25-50 (235)
297 TIGR03015 pepcterm_ATPase puta 96.3 0.0037 7.9E-08 56.2 3.8 26 93-118 43-68 (269)
298 cd03259 ABC_Carb_Solutes_like 96.3 0.0033 7.2E-08 54.9 3.4 25 92-116 25-49 (213)
299 PF13245 AAA_19: Part of AAA d 96.3 0.0049 1.1E-07 45.9 3.7 25 93-117 10-35 (76)
300 KOG1969 DNA replication checkp 96.3 0.0031 6.8E-08 64.7 3.5 36 89-124 322-357 (877)
301 PRK11331 5-methylcytosine-spec 96.3 0.0034 7.4E-08 61.7 3.6 28 92-119 193-220 (459)
302 cd01130 VirB11-like_ATPase Typ 96.3 0.0038 8.2E-08 53.8 3.6 26 92-117 24-49 (186)
303 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0036 7.8E-08 54.5 3.5 25 92-116 25-49 (213)
304 cd03293 ABC_NrtD_SsuB_transpor 96.3 0.0035 7.6E-08 55.1 3.4 25 92-116 29-53 (220)
305 cd03224 ABC_TM1139_LivF_branch 96.3 0.0033 7.1E-08 55.1 3.2 25 92-116 25-49 (222)
306 cd03256 ABC_PhnC_transporter A 96.3 0.0035 7.6E-08 55.6 3.4 25 92-116 26-50 (241)
307 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0033 7.1E-08 55.7 3.2 25 92-116 25-49 (236)
308 cd03235 ABC_Metallic_Cations A 96.3 0.0033 7.2E-08 54.9 3.2 25 92-116 24-48 (213)
309 cd03260 ABC_PstB_phosphate_tra 96.3 0.0037 8.1E-08 55.1 3.5 26 92-117 25-50 (227)
310 TIGR03608 L_ocin_972_ABC putat 96.3 0.0038 8.2E-08 54.1 3.4 25 92-116 23-47 (206)
311 cd03301 ABC_MalK_N The N-termi 96.3 0.0038 8.3E-08 54.4 3.5 26 92-117 25-50 (213)
312 TIGR02315 ABC_phnC phosphonate 96.3 0.0037 8.1E-08 55.6 3.4 25 92-116 27-51 (243)
313 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0039 8.5E-08 54.7 3.4 25 92-116 30-54 (221)
314 PRK10416 signal recognition pa 96.2 0.007 1.5E-07 57.0 5.3 35 92-126 113-152 (318)
315 cd03263 ABC_subfamily_A The AB 96.2 0.0039 8.5E-08 54.6 3.4 25 92-116 27-51 (220)
316 cd03258 ABC_MetN_methionine_tr 96.2 0.0039 8.5E-08 55.2 3.5 26 92-117 30-55 (233)
317 KOG4622 Predicted nucleotide k 96.2 0.075 1.6E-06 47.1 11.3 21 95-115 3-23 (291)
318 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0039 8.5E-08 54.1 3.4 25 92-116 25-49 (205)
319 PRK09183 transposase/IS protei 96.2 0.0052 1.1E-07 56.1 4.3 26 92-117 101-126 (259)
320 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0041 8.9E-08 52.8 3.4 25 92-116 25-49 (173)
321 PLN02796 D-glycerate 3-kinase 96.2 0.0044 9.6E-08 59.0 3.9 37 92-128 99-140 (347)
322 COG0465 HflB ATP-dependent Zn 96.2 0.016 3.5E-07 58.7 7.9 34 91-124 181-214 (596)
323 PRK04296 thymidine kinase; Pro 96.2 0.0046 1E-07 53.6 3.6 26 92-117 1-26 (190)
324 cd03229 ABC_Class3 This class 96.2 0.0045 9.8E-08 52.7 3.5 24 92-115 25-48 (178)
325 cd01120 RecA-like_NTPases RecA 96.2 0.004 8.7E-08 50.5 3.1 23 95-117 1-23 (165)
326 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0043 9.3E-08 55.1 3.5 25 92-116 26-50 (236)
327 cd03265 ABC_DrrA DrrA is the A 96.2 0.0044 9.5E-08 54.4 3.5 25 92-116 25-49 (220)
328 PF01695 IstB_IS21: IstB-like 96.2 0.0052 1.1E-07 53.0 3.8 48 83-132 39-91 (178)
329 cd01394 radB RadB. The archaea 96.2 0.0052 1.1E-07 53.8 3.9 38 89-126 15-57 (218)
330 PRK11034 clpA ATP-dependent Cl 96.2 0.0043 9.2E-08 64.8 3.8 30 95-124 490-519 (758)
331 cd03296 ABC_CysA_sulfate_impor 96.2 0.0044 9.5E-08 55.2 3.4 26 92-117 27-52 (239)
332 cd03257 ABC_NikE_OppD_transpor 96.2 0.0043 9.4E-08 54.5 3.4 25 92-116 30-54 (228)
333 TIGR01978 sufC FeS assembly AT 96.2 0.0043 9.4E-08 55.1 3.4 25 92-116 25-49 (243)
334 PF01712 dNK: Deoxynucleoside 96.2 0.0014 3.1E-08 54.5 0.3 51 186-236 68-126 (146)
335 PRK11629 lolD lipoprotein tran 96.2 0.0045 9.8E-08 54.9 3.5 25 92-116 34-58 (233)
336 PRK12377 putative replication 96.2 0.0097 2.1E-07 54.1 5.6 39 79-117 85-125 (248)
337 cd03232 ABC_PDR_domain2 The pl 96.2 0.0046 1E-07 53.4 3.3 24 92-115 32-55 (192)
338 TIGR03410 urea_trans_UrtE urea 96.2 0.0045 9.8E-08 54.7 3.4 26 92-117 25-50 (230)
339 PF03205 MobB: Molybdopterin g 96.1 0.0055 1.2E-07 50.8 3.6 24 94-117 1-24 (140)
340 cd03222 ABC_RNaseL_inhibitor T 96.1 0.0048 1E-07 53.2 3.4 24 92-115 24-47 (177)
341 PRK11124 artP arginine transpo 96.1 0.0048 1E-07 55.0 3.5 25 92-116 27-51 (242)
342 cd03218 ABC_YhbG The ABC trans 96.1 0.0047 1E-07 54.5 3.4 25 92-116 25-49 (232)
343 PRK10584 putative ABC transpor 96.1 0.005 1.1E-07 54.3 3.5 25 92-116 35-59 (228)
344 PRK08181 transposase; Validate 96.1 0.012 2.6E-07 54.1 6.1 43 86-130 101-148 (269)
345 PRK14250 phosphate ABC transpo 96.1 0.0049 1.1E-07 55.1 3.5 26 92-117 28-53 (241)
346 PRK15177 Vi polysaccharide exp 96.1 0.0049 1.1E-07 54.3 3.4 25 92-116 12-36 (213)
347 cd03247 ABCC_cytochrome_bd The 96.1 0.0052 1.1E-07 52.3 3.5 25 92-116 27-51 (178)
348 PRK06526 transposase; Provisio 96.1 0.0073 1.6E-07 55.1 4.6 31 85-117 92-122 (254)
349 PF00931 NB-ARC: NB-ARC domain 96.1 0.0071 1.5E-07 54.7 4.5 35 82-116 6-42 (287)
350 PRK11264 putative amino-acid A 96.1 0.005 1.1E-07 55.1 3.5 26 92-117 28-53 (250)
351 PRK13541 cytochrome c biogenes 96.1 0.0051 1.1E-07 53.1 3.4 26 92-117 25-50 (195)
352 COG1116 TauB ABC-type nitrate/ 96.1 0.005 1.1E-07 55.9 3.4 24 92-115 28-51 (248)
353 PRK11248 tauB taurine transpor 96.1 0.005 1.1E-07 55.7 3.5 25 92-116 26-50 (255)
354 COG1136 SalX ABC-type antimicr 96.1 0.0052 1.1E-07 55.2 3.5 24 92-115 30-53 (226)
355 PRK10247 putative ABC transpor 96.1 0.0053 1.1E-07 54.3 3.5 25 92-116 32-56 (225)
356 cd03264 ABC_drug_resistance_li 96.1 0.0047 1E-07 53.8 3.1 23 93-116 26-48 (211)
357 cd01131 PilT Pilus retraction 96.1 0.0054 1.2E-07 53.5 3.5 24 95-118 3-26 (198)
358 TIGR02639 ClpA ATP-dependent C 96.1 0.0089 1.9E-07 62.2 5.7 35 83-117 193-227 (731)
359 cd03223 ABCD_peroxisomal_ALDP 96.1 0.0055 1.2E-07 51.8 3.4 26 92-117 26-51 (166)
360 PRK14242 phosphate transporter 96.1 0.0052 1.1E-07 55.1 3.5 25 92-116 31-55 (253)
361 cd03266 ABC_NatA_sodium_export 96.1 0.0053 1.2E-07 53.7 3.4 25 92-116 30-54 (218)
362 PRK14962 DNA polymerase III su 96.1 0.0054 1.2E-07 60.8 3.8 26 94-119 37-62 (472)
363 TIGR03771 anch_rpt_ABC anchore 96.1 0.0052 1.1E-07 54.3 3.4 26 92-117 5-30 (223)
364 PRK10751 molybdopterin-guanine 96.1 0.0061 1.3E-07 52.6 3.7 27 92-118 5-31 (173)
365 cd03234 ABCG_White The White s 96.1 0.0051 1.1E-07 54.3 3.3 26 92-117 32-57 (226)
366 KOG0736 Peroxisome assembly fa 96.1 0.027 5.8E-07 58.4 8.7 33 92-124 704-736 (953)
367 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0055 1.2E-07 53.3 3.4 25 92-116 25-49 (208)
368 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.0052 1.1E-07 68.9 3.9 41 89-129 1626-1668(2281)
369 PRK14247 phosphate ABC transpo 96.1 0.0054 1.2E-07 54.9 3.4 26 92-117 28-53 (250)
370 PF08477 Miro: Miro-like prote 96.1 0.0063 1.4E-07 47.5 3.4 22 95-116 1-22 (119)
371 PRK10895 lipopolysaccharide AB 96.1 0.0055 1.2E-07 54.6 3.4 26 92-117 28-53 (241)
372 PRK10744 pstB phosphate transp 96.0 0.0056 1.2E-07 55.4 3.4 26 92-117 38-63 (260)
373 TIGR02770 nickel_nikD nickel i 96.0 0.0055 1.2E-07 54.3 3.4 26 92-117 11-36 (230)
374 cd03246 ABCC_Protease_Secretio 96.0 0.0061 1.3E-07 51.7 3.5 25 92-116 27-51 (173)
375 cd03215 ABC_Carb_Monos_II This 96.0 0.0058 1.3E-07 52.3 3.3 26 92-117 25-50 (182)
376 PRK09493 glnQ glutamine ABC tr 96.0 0.0057 1.2E-07 54.4 3.4 26 92-117 26-51 (240)
377 PRK10908 cell division protein 96.0 0.0058 1.3E-07 53.7 3.5 25 92-116 27-51 (222)
378 PF00437 T2SE: Type II/IV secr 96.0 0.0091 2E-07 54.2 4.8 42 77-118 109-152 (270)
379 PRK14974 cell division protein 96.0 0.0098 2.1E-07 56.5 5.2 36 92-127 139-179 (336)
380 TIGR02323 CP_lyasePhnK phospho 96.0 0.0057 1.2E-07 54.9 3.4 26 92-117 28-53 (253)
381 PRK14274 phosphate ABC transpo 96.0 0.0059 1.3E-07 55.1 3.5 26 92-117 37-62 (259)
382 TIGR01184 ntrCD nitrate transp 96.0 0.006 1.3E-07 54.2 3.5 26 92-117 10-35 (230)
383 cd03254 ABCC_Glucan_exporter_l 96.0 0.006 1.3E-07 53.8 3.4 26 92-117 28-53 (229)
384 cd03214 ABC_Iron-Siderophores_ 96.0 0.0063 1.4E-07 51.9 3.5 25 92-116 24-48 (180)
385 cd03216 ABC_Carb_Monos_I This 96.0 0.0064 1.4E-07 51.2 3.5 24 92-115 25-48 (163)
386 cd01128 rho_factor Transcripti 96.0 0.0049 1.1E-07 56.1 2.9 38 83-120 5-43 (249)
387 TIGR01189 ccmA heme ABC export 96.0 0.0062 1.3E-07 52.7 3.4 25 92-116 25-49 (198)
388 PF03029 ATP_bind_1: Conserved 96.0 0.0046 9.9E-08 55.8 2.7 22 98-119 1-22 (238)
389 PRK10771 thiQ thiamine transpo 96.0 0.0059 1.3E-07 54.1 3.4 25 92-116 24-48 (232)
390 PRK13540 cytochrome c biogenes 96.0 0.0064 1.4E-07 52.7 3.5 25 92-116 26-50 (200)
391 PRK00440 rfc replication facto 96.0 0.012 2.6E-07 54.0 5.5 41 77-117 22-62 (319)
392 TIGR01618 phage_P_loop phage n 96.0 0.0052 1.1E-07 55.0 3.0 35 93-129 12-46 (220)
393 TIGR03005 ectoine_ehuA ectoine 96.0 0.006 1.3E-07 54.8 3.4 25 92-116 25-49 (252)
394 cd03228 ABCC_MRP_Like The MRP 96.0 0.0067 1.4E-07 51.3 3.5 26 92-117 27-52 (171)
395 PRK11701 phnK phosphonate C-P 96.0 0.0061 1.3E-07 55.0 3.4 26 92-117 31-56 (258)
396 PRK14267 phosphate ABC transpo 96.0 0.0061 1.3E-07 54.7 3.4 25 92-116 29-53 (253)
397 TIGR00073 hypB hydrogenase acc 96.0 0.0089 1.9E-07 52.3 4.4 34 85-118 14-47 (207)
398 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.0063 1.4E-07 54.3 3.5 26 92-117 26-51 (242)
399 cd03245 ABCC_bacteriocin_expor 96.0 0.0064 1.4E-07 53.2 3.5 25 92-116 29-53 (220)
400 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.0084 1.8E-07 44.2 3.6 29 95-123 1-32 (99)
401 PRK13543 cytochrome c biogenes 96.0 0.0064 1.4E-07 53.3 3.4 25 92-116 36-60 (214)
402 PRK11300 livG leucine/isoleuci 96.0 0.0058 1.3E-07 54.8 3.2 25 92-116 30-54 (255)
403 PRK14255 phosphate ABC transpo 96.0 0.0063 1.4E-07 54.6 3.4 25 92-116 30-54 (252)
404 cd03298 ABC_ThiQ_thiamine_tran 96.0 0.0065 1.4E-07 52.9 3.4 25 92-116 23-47 (211)
405 PRK14262 phosphate ABC transpo 96.0 0.0063 1.4E-07 54.5 3.4 25 92-116 28-52 (250)
406 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.0 0.0063 1.4E-07 53.9 3.4 25 92-116 47-71 (224)
407 PRK13768 GTPase; Provisional 96.0 0.0079 1.7E-07 54.6 4.1 34 93-126 2-40 (253)
408 TIGR02237 recomb_radB DNA repa 96.0 0.0078 1.7E-07 52.3 3.9 38 89-126 8-50 (209)
409 TIGR00972 3a0107s01c2 phosphat 96.0 0.0065 1.4E-07 54.4 3.5 25 92-116 26-50 (247)
410 cd03238 ABC_UvrA The excision 96.0 0.0066 1.4E-07 52.3 3.4 24 92-115 20-43 (176)
411 cd03233 ABC_PDR_domain1 The pl 96.0 0.0057 1.2E-07 53.3 3.0 26 92-117 32-57 (202)
412 TIGR01277 thiQ thiamine ABC tr 96.0 0.0066 1.4E-07 53.1 3.4 25 92-116 23-47 (213)
413 cd03251 ABCC_MsbA MsbA is an e 96.0 0.0066 1.4E-07 53.7 3.5 26 92-117 27-52 (234)
414 PRK14961 DNA polymerase III su 95.9 0.007 1.5E-07 57.8 3.8 26 94-119 39-64 (363)
415 PRK13539 cytochrome c biogenes 95.9 0.0068 1.5E-07 52.9 3.5 25 92-116 27-51 (207)
416 cd03252 ABCC_Hemolysin The ABC 95.9 0.0066 1.4E-07 53.8 3.4 26 92-117 27-52 (237)
417 PRK14241 phosphate transporter 95.9 0.0065 1.4E-07 54.8 3.4 25 92-116 29-53 (258)
418 TIGR00064 ftsY signal recognit 95.9 0.0072 1.6E-07 55.6 3.8 36 92-127 71-111 (272)
419 PRK14490 putative bifunctional 95.9 0.0068 1.5E-07 58.0 3.7 29 91-119 3-31 (369)
420 PRK14256 phosphate ABC transpo 95.9 0.0067 1.5E-07 54.4 3.5 26 92-117 29-54 (252)
421 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.0067 1.5E-07 54.8 3.4 26 92-117 24-49 (246)
422 PRK14251 phosphate ABC transpo 95.9 0.0069 1.5E-07 54.3 3.5 25 92-116 29-53 (251)
423 cd00544 CobU Adenosylcobinamid 95.9 0.0076 1.7E-07 51.6 3.6 26 95-120 1-26 (169)
424 cd03250 ABCC_MRP_domain1 Domai 95.9 0.0071 1.5E-07 52.5 3.4 25 92-116 30-54 (204)
425 COG3839 MalK ABC-type sugar tr 95.9 0.0065 1.4E-07 57.7 3.4 24 92-115 28-51 (338)
426 cd03244 ABCC_MRP_domain2 Domai 95.9 0.0071 1.5E-07 53.0 3.5 25 92-116 29-53 (221)
427 PRK10575 iron-hydroxamate tran 95.9 0.0062 1.4E-07 55.2 3.2 25 92-116 36-60 (265)
428 PRK11247 ssuB aliphatic sulfon 95.9 0.0069 1.5E-07 55.1 3.5 26 92-117 37-62 (257)
429 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.0071 1.5E-07 53.7 3.5 26 92-117 28-53 (238)
430 COG1419 FlhF Flagellar GTP-bin 95.9 0.051 1.1E-06 52.7 9.4 38 91-128 201-245 (407)
431 PRK10463 hydrogenase nickel in 95.9 0.0087 1.9E-07 55.7 4.1 34 84-117 95-128 (290)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.0072 1.6E-07 50.0 3.2 25 92-116 25-49 (144)
433 PRK14248 phosphate ABC transpo 95.9 0.0071 1.5E-07 54.9 3.5 25 92-116 46-70 (268)
434 TIGR03499 FlhF flagellar biosy 95.9 0.0078 1.7E-07 55.5 3.8 36 92-127 193-235 (282)
435 PRK14956 DNA polymerase III su 95.9 0.0071 1.5E-07 59.9 3.7 28 93-120 40-67 (484)
436 PF00308 Bac_DnaA: Bacterial d 95.9 0.25 5.4E-06 43.9 13.2 55 76-130 15-78 (219)
437 KOG0745 Putative ATP-dependent 95.9 0.0075 1.6E-07 58.9 3.7 33 91-123 224-256 (564)
438 cd03248 ABCC_TAP TAP, the Tran 95.9 0.0075 1.6E-07 53.1 3.5 26 92-117 39-64 (226)
439 PRK13531 regulatory ATPase Rav 95.9 0.0067 1.5E-07 60.2 3.5 30 89-118 35-64 (498)
440 TIGR02324 CP_lyasePhnL phospho 95.9 0.0075 1.6E-07 53.0 3.4 26 92-117 33-58 (224)
441 cd03253 ABCC_ATM1_transporter 95.9 0.0074 1.6E-07 53.4 3.5 26 92-117 26-51 (236)
442 PRK11831 putative ABC transpor 95.9 0.0071 1.5E-07 55.0 3.4 26 92-117 32-57 (269)
443 PRK10865 protein disaggregatio 95.9 0.0099 2.1E-07 63.0 4.9 38 80-117 186-223 (857)
444 PRK14239 phosphate transporter 95.9 0.0073 1.6E-07 54.1 3.4 24 92-115 30-53 (252)
445 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.0078 1.7E-07 52.3 3.5 25 92-116 33-57 (207)
446 TIGR02868 CydC thiol reductant 95.9 0.0067 1.5E-07 60.3 3.4 24 92-115 360-383 (529)
447 KOG0737 AAA+-type ATPase [Post 95.9 0.0065 1.4E-07 58.0 3.1 42 92-133 126-169 (386)
448 PRK14269 phosphate ABC transpo 95.8 0.0077 1.7E-07 53.9 3.5 25 92-116 27-51 (246)
449 PRK14244 phosphate ABC transpo 95.8 0.0078 1.7E-07 54.0 3.5 25 92-116 30-54 (251)
450 PRK13538 cytochrome c biogenes 95.8 0.0079 1.7E-07 52.3 3.4 25 92-116 26-50 (204)
451 PRK13648 cbiO cobalt transport 95.8 0.0077 1.7E-07 54.8 3.5 25 92-116 34-58 (269)
452 PRK15056 manganese/iron transp 95.8 0.0075 1.6E-07 55.0 3.4 25 92-116 32-56 (272)
453 PRK13645 cbiO cobalt transport 95.8 0.0076 1.6E-07 55.4 3.4 26 92-117 36-61 (289)
454 PRK13638 cbiO cobalt transport 95.8 0.0072 1.6E-07 55.0 3.3 26 92-117 26-51 (271)
455 PRK14261 phosphate ABC transpo 95.8 0.0077 1.7E-07 54.1 3.4 24 92-115 31-54 (253)
456 cd03267 ABC_NatA_like Similar 95.8 0.008 1.7E-07 53.6 3.4 25 92-116 46-70 (236)
457 PLN03046 D-glycerate 3-kinase; 95.8 0.0082 1.8E-07 58.6 3.7 37 92-128 211-252 (460)
458 TIGR02782 TrbB_P P-type conjug 95.8 0.01 2.2E-07 55.3 4.2 26 92-117 131-156 (299)
459 COG1855 ATPase (PilT family) [ 95.8 0.007 1.5E-07 59.4 3.2 36 77-117 252-287 (604)
460 PRK14259 phosphate ABC transpo 95.8 0.0079 1.7E-07 54.8 3.4 25 92-116 38-62 (269)
461 PRK14235 phosphate transporter 95.8 0.0082 1.8E-07 54.6 3.5 26 92-117 44-69 (267)
462 PRK14253 phosphate ABC transpo 95.8 0.0082 1.8E-07 53.7 3.5 26 92-117 28-53 (249)
463 PRK10619 histidine/lysine/argi 95.8 0.0081 1.7E-07 54.1 3.5 26 92-117 30-55 (257)
464 PRK14245 phosphate ABC transpo 95.8 0.0081 1.8E-07 53.8 3.5 25 92-116 28-52 (250)
465 cd03294 ABC_Pro_Gly_Bertaine T 95.8 0.008 1.7E-07 54.8 3.5 26 92-117 49-74 (269)
466 CHL00131 ycf16 sulfate ABC tra 95.8 0.0074 1.6E-07 54.0 3.2 24 92-115 32-55 (252)
467 PRK06645 DNA polymerase III su 95.8 0.0084 1.8E-07 59.9 3.8 28 93-120 43-70 (507)
468 PRK12323 DNA polymerase III su 95.8 0.085 1.8E-06 54.3 11.0 26 94-119 39-64 (700)
469 PRK13632 cbiO cobalt transport 95.8 0.0081 1.8E-07 54.7 3.4 26 92-117 34-59 (271)
470 TIGR00176 mobB molybdopterin-g 95.8 0.0083 1.8E-07 50.6 3.2 23 95-117 1-23 (155)
471 COG1120 FepC ABC-type cobalami 95.8 0.0084 1.8E-07 54.9 3.4 36 92-127 27-66 (258)
472 PRK13341 recombination factor 95.8 0.0091 2E-07 62.1 4.1 35 92-126 51-85 (725)
473 PRK14273 phosphate ABC transpo 95.8 0.0086 1.9E-07 53.8 3.5 26 92-117 32-57 (254)
474 cd03236 ABC_RNaseL_inhibitor_d 95.8 0.0085 1.8E-07 54.5 3.5 26 92-117 25-50 (255)
475 PRK09544 znuC high-affinity zi 95.8 0.0086 1.9E-07 54.2 3.5 25 92-116 29-53 (251)
476 TIGR00101 ureG urease accessor 95.8 0.0096 2.1E-07 52.2 3.7 26 93-118 1-26 (199)
477 cd03213 ABCG_EPDR ABCG transpo 95.8 0.0086 1.9E-07 51.8 3.3 26 92-117 34-59 (194)
478 cd03290 ABCC_SUR1_N The SUR do 95.8 0.0089 1.9E-07 52.4 3.5 25 92-116 26-50 (218)
479 PRK13649 cbiO cobalt transport 95.8 0.0082 1.8E-07 54.8 3.3 26 92-117 32-57 (280)
480 PRK00411 cdc6 cell division co 95.8 0.016 3.5E-07 55.1 5.5 27 91-117 53-79 (394)
481 PRK14240 phosphate transporter 95.8 0.0087 1.9E-07 53.6 3.4 25 92-116 28-52 (250)
482 COG4185 Uncharacterized protei 95.8 0.08 1.7E-06 45.5 8.9 39 93-131 2-42 (187)
483 PRK09580 sufC cysteine desulfu 95.8 0.0079 1.7E-07 53.6 3.1 25 92-116 26-50 (248)
484 PRK10418 nikD nickel transport 95.7 0.0088 1.9E-07 53.9 3.4 25 92-116 28-52 (254)
485 PRK14237 phosphate transporter 95.7 0.009 1.9E-07 54.3 3.5 26 92-117 45-70 (267)
486 PRK14722 flhF flagellar biosyn 95.7 0.0097 2.1E-07 57.3 3.9 36 92-127 136-178 (374)
487 PRK09984 phosphonate/organopho 95.7 0.0087 1.9E-07 54.1 3.4 26 92-117 29-54 (262)
488 PRK14249 phosphate ABC transpo 95.7 0.0091 2E-07 53.6 3.5 26 92-117 29-54 (251)
489 PRK06921 hypothetical protein; 95.7 0.015 3.2E-07 53.4 4.9 39 79-117 97-141 (266)
490 PRK10419 nikE nickel transport 95.7 0.0087 1.9E-07 54.5 3.4 25 92-116 37-61 (268)
491 PRK14270 phosphate ABC transpo 95.7 0.0092 2E-07 53.5 3.5 25 92-116 29-53 (251)
492 PRK14268 phosphate ABC transpo 95.7 0.009 1.9E-07 53.9 3.4 25 92-116 37-61 (258)
493 TIGR02639 ClpA ATP-dependent C 95.7 0.0085 1.8E-07 62.4 3.7 34 95-128 486-521 (731)
494 PRK14238 phosphate transporter 95.7 0.009 2E-07 54.5 3.5 26 92-117 49-74 (271)
495 KOG4235 Mitochondrial thymidin 95.7 0.024 5.3E-07 50.0 5.9 24 95-118 24-47 (244)
496 PRK11614 livF leucine/isoleuci 95.7 0.0082 1.8E-07 53.3 3.1 25 92-116 30-54 (237)
497 PF01926 MMR_HSR1: 50S ribosom 95.7 0.0098 2.1E-07 46.6 3.2 21 95-115 1-21 (116)
498 cd02034 CooC The accessory pro 95.7 0.013 2.8E-07 47.0 4.0 31 96-126 2-37 (116)
499 cd03231 ABC_CcmA_heme_exporter 95.7 0.0097 2.1E-07 51.7 3.4 25 92-116 25-49 (201)
500 PRK14243 phosphate transporter 95.7 0.0095 2E-07 54.1 3.5 25 92-116 35-59 (264)
No 1
>PLN02199 shikimate kinase
Probab=100.00 E-value=1.5e-36 Score=278.51 Aligned_cols=213 Identities=31% Similarity=0.493 Sum_probs=186.3
Q ss_pred ceecccccCCccccc-cccccCCccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-
Q 023749 54 ITTRSIADDTTSNTV-TKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA- 131 (278)
Q Consensus 54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~- 131 (278)
.++|| .+...+..+ |...+.|++ .+|+++.++++.+++++|+|+|++||||||+|+.||+.+|++|+|+|.++++.
T Consensus 64 ~~~~~-~~~~~~~le~~~~~~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~ 141 (303)
T PLN02199 64 AVSCS-DNNSSALLETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM 141 (303)
T ss_pred ccccC-CCCchhhcccCCCCCCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh
Confidence 45577 444433222 333378887 59999999999999999999999999999999999999999999999999997
Q ss_pred hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-h---cCCC
Q 023749 132 AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D---HSGF 207 (278)
Q Consensus 132 ~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~---~r~r 207 (278)
.| +++.++|..+|+..|++.|.++|.++....++||++|+|++..+.||.+++.+++|||++|++++.+| . ...|
T Consensus 142 ~G-~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~R 220 (303)
T PLN02199 142 NG-TSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSR 220 (303)
T ss_pred cC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCC
Confidence 46 89999999999999999999999999877789999999999999999988889999999999999999 3 2346
Q ss_pred CC---CC------hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 208 PE---SE------VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 208 p~---~~------~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
|. .+ ..+.+.++|++|.+.|..||++|+++++|.++|+.||+++||++++.+|++.+.+.+.
T Consensus 221 PLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 221 PLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE 291 (303)
T ss_pred CcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 52 11 1467889999999999999999999999999999999999999999999999987764
No 2
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-34 Score=242.93 Aligned_cols=162 Identities=30% Similarity=0.448 Sum_probs=146.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~ 172 (278)
.+.|+|+|+|||||||+|+.||+.||++|+|+|.++++..| ++++++|..+||+.||..|.+++.++...++.||++||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999988889999999
Q ss_pred ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-cCCCC---CCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccc
Q 023749 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFP---ESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGY 245 (278)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-~r~rp---~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~ 245 (278)
|++..++|+.+|+ .+++|||++|++++.+| + .+.|| ..+..+.+..+|++|.++|+ .||++++.
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~--------- 151 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDT--------- 151 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecC---------
Confidence 9999999999998 88999999999999999 3 45566 23445779999999999999 58999983
Q ss_pred cCCCCCCHHHHHHHHHHHhhhcC
Q 023749 246 DDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 246 ~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+..+ ++++++|++.+....
T Consensus 152 ---~~~~-~~v~~~i~~~l~~~~ 170 (172)
T COG0703 152 ---DDRS-EEVVEEILEALEGSL 170 (172)
T ss_pred ---CCCc-HHHHHHHHHHHHHhc
Confidence 4455 999999999987654
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.97 E-value=1.2e-30 Score=225.84 Aligned_cols=166 Identities=24% Similarity=0.285 Sum_probs=149.8
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
+..+.+|+|+|++||||||+|+.||+.||++|+|+|.++++..| ++++++|..+|+..||++|.+++.++....++||+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa 85 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVIS 85 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 34678999999999999999999999999999999999999998 89999999999999999999999999877889999
Q ss_pred eCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCC---CChHHHHHHHHHHhhhccccCcEEEecCccccccc
Q 023749 170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG 244 (278)
Q Consensus 170 ~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~---~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~ 244 (278)
+|+|++.++.|++.++ .+.+|||++|++++.+| ..+.||. .+..+.+.++|++|.+.|..||++|+
T Consensus 86 ~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~--------- 156 (182)
T PRK13948 86 LGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVS--------- 156 (182)
T ss_pred CCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEE---------
Confidence 9999999999998887 78999999999999999 5455662 23457889999999999988999998
Q ss_pred ccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 245 YDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 245 ~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
|++.|+++++++|.+.+..++
T Consensus 157 ---t~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 157 ---TDGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred ---CCCCCHHHHHHHHHHHHHHHh
Confidence 678999999999999998754
No 4
>PRK13949 shikimate kinase; Provisional
Probab=99.96 E-value=1.4e-28 Score=210.38 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=139.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
+.|+|+|+|||||||+|+.||+.+|++++|+|.++++..+ +++.++|...|+..|++.|..++.++....++||++|+|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4799999999999999999999999999999999999988 899999999999999999999999987667899999999
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh-h--cCCCCCC------ChHHHHHHHHHHhhhccccCcEEEecCcccccc
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D--HSGFPES------EVLPQLFALYKEMRDGYATADVTVSLQKVASQL 243 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~--~r~rp~~------~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~ 243 (278)
++..+.+++.|+ .+++|||++|++++.+| . +++||.. +..+.+..+|++|.++|+.||++||
T Consensus 81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id-------- 152 (169)
T PRK13949 81 APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFN-------- 152 (169)
T ss_pred ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEE--------
Confidence 999998998887 89999999999999999 3 3467632 1224677899999999999999998
Q ss_pred cccCCCCCCHHHHHHHHHHHh
Q 023749 244 GYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i 264 (278)
++++++++++++|++.+
T Consensus 153 ----~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 153 ----ADKLEDESQIEQLVQRL 169 (169)
T ss_pred ----CCCCCHHHHHHHHHHhC
Confidence 67899999999998753
No 5
>PRK13946 shikimate kinase; Provisional
Probab=99.96 E-value=2.1e-27 Score=205.05 Aligned_cols=169 Identities=28% Similarity=0.355 Sum_probs=149.4
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (278)
+.+..+.|+|+|++||||||+|+.||++||++|+|+|.++++..| .++.+++..+|+..|++.|.+++..+...+++||
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL 84 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 567889999999999999999999999999999999999998888 8888999999999999999999999887778999
Q ss_pred EeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hc-CCCCC---CChHHHHHHHHHHhhhccccCcEEEecCccccc
Q 023749 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DH-SGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQ 242 (278)
Q Consensus 169 ~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~-r~rp~---~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~ 242 (278)
++|++.+..+.+++.++ .+++|||++|++++.+| .. .++|. .+..+.++.++++|.+.|..+|++|+
T Consensus 85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~------- 157 (184)
T PRK13946 85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVA------- 157 (184)
T ss_pred ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEE-------
Confidence 99988888888888886 78999999999999999 43 34552 34467788899999999988999998
Q ss_pred ccccCCCCCCHHHHHHHHHHHhhhcCCC
Q 023749 243 LGYDDLDAVTTEDMTLEVKWLYNASISD 270 (278)
Q Consensus 243 ~~~~Dts~~tpeeva~~I~~~i~~~~~~ 270 (278)
+++.+++++++.|.+.+..+.++
T Consensus 158 -----~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 158 -----SRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred -----CCCCCHHHHHHHHHHHHHHhhcc
Confidence 68899999999999999887654
No 6
>PRK00625 shikimate kinase; Provisional
Probab=99.96 E-value=1.6e-27 Score=204.91 Aligned_cols=163 Identities=24% Similarity=0.359 Sum_probs=142.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC----ChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~----~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
++|+|+|+|||||||+|+.||+++|++|+|+|.++++..| + ++.++|+.+|++.|+..|..++.++.. .+.||+
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g-~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs 78 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH-GALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVA 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhC-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence 4799999999999999999999999999999999999887 5 899999999999999999999988865 667999
Q ss_pred eCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhcccc-CcEEEecCcccccccc
Q 023749 170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGY 245 (278)
Q Consensus 170 ~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~~ 245 (278)
+|+|.+..++++..++ .+.+|||++|++++.+| ..|+++. ....+.+.++|++|.+.|+. ||++|+.++|
T Consensus 79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~~~------ 152 (173)
T PRK00625 79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLDHV------ 152 (173)
T ss_pred CCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCCCc------
Confidence 9999999999998887 68999999999999999 7666543 22356788899999999985 9999997754
Q ss_pred cCCCCCCHHHHHHHHHHHh
Q 023749 246 DDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 246 ~Dts~~tpeeva~~I~~~i 264 (278)
.+|++.++-++++.+...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 153 AETSSESLMRACQSFCTLL 171 (173)
T ss_pred ccCCCCCHHHHHHHHHHHh
Confidence 4579999999999988765
No 7
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.96 E-value=2.3e-27 Score=203.27 Aligned_cols=162 Identities=23% Similarity=0.363 Sum_probs=143.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
..++|+|+|++||||||+|+.||+.+|++++|+|..+++..| .++.++|..+|+..|+..|.+++..+...+++|+++|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 467899999999999999999999999999999999999888 8888999999999999999999999887788999999
Q ss_pred CceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCCC---CChHHHHHHHHHHhhhcccc-CcEEEecCccccccc
Q 023749 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPE---SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLG 244 (278)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~---~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~ 244 (278)
+|++..+.++.+|+ .+.+|||++|++++.+| ....||. .+..+.+..++++|.++|+. ||++||
T Consensus 82 gg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~id--------- 152 (172)
T PRK05057 82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIR--------- 152 (172)
T ss_pred CchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEE---------
Confidence 99999999998887 88999999999999999 3334552 22345688899999999985 999998
Q ss_pred ccCCCCCCHHHHHHHHHHHhhh
Q 023749 245 YDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 245 ~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+++|++|++++|.+.+.+
T Consensus 153 ---t~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 153 ---TDDQSAKVVANQIIHMLES 171 (172)
T ss_pred ---CCCCCHHHHHHHHHHHHhh
Confidence 6899999999999998864
No 8
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.95 E-value=2.4e-27 Score=235.61 Aligned_cols=162 Identities=20% Similarity=0.280 Sum_probs=144.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
.-+.|+|+|+|||||||+|+.||++||++|+|+|.++++..| ++++++|..+|++.||++|.++++++....++||+||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 356899999999999999999999999999999999999999 9999999999999999999999999886677899999
Q ss_pred CceeechhHHHhh----h-CCcEEEEEcCHHHHHhh--hcCCCCC--CChHHHHHHHHHHhhhcccc-CcEEEecCcccc
Q 023749 172 NGAVQSSANLALL----R-HGISLWIDVPPGMVARM--DHSGFPE--SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVAS 241 (278)
Q Consensus 172 ~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R--~~r~rp~--~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~ 241 (278)
+|++.++.|++.| + .+++|||++|++++.+| ...+||. .+..+.+.++|++|.+.|+. ||++|+
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~------ 157 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVH------ 157 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEE------
Confidence 9999999999865 4 67999999999999999 3334663 23357889999999999985 999998
Q ss_pred cccccCCCCCCHHHHHHHHHHHhhh
Q 023749 242 QLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 242 ~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|++.++++++++|++.+..
T Consensus 158 ------~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 158 ------TRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred ------CCCCCHHHHHHHHHHHHHh
Confidence 6789999999999998864
No 9
>PRK13947 shikimate kinase; Provisional
Probab=99.95 E-value=1.2e-26 Score=196.38 Aligned_cols=159 Identities=24% Similarity=0.408 Sum_probs=139.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
++|+|+|+|||||||+|+.||++||++|+|.|.++++..| .++.++|...|+..|++.|..+++.+....++||++|+|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g 80 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG 80 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence 3699999999999999999999999999999999999888 888899999999999999999999888777899999999
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-cCCCCC---CChHHHHHHHHHHhhhccccCcEEEecCcccccccccC
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDD 247 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-~r~rp~---~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~D 247 (278)
+++++.++..|+ .+++|||++|++.+.+| . ++.+|. .+..+.+.+++.+|.+.|+.+|++||
T Consensus 81 ~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Id------------ 148 (171)
T PRK13947 81 VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTID------------ 148 (171)
T ss_pred CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEE------------
Confidence 999888887776 78999999999999999 3 334542 33557788889999998888999998
Q ss_pred CCCCCHHHHHHHHHH-Hhh
Q 023749 248 LDAVTTEDMTLEVKW-LYN 265 (278)
Q Consensus 248 ts~~tpeeva~~I~~-~i~ 265 (278)
|++.++++++++|.+ ++.
T Consensus 149 t~~~~~~~i~~~I~~~~~~ 167 (171)
T PRK13947 149 TGDMTIDEVAEEIIKAYLK 167 (171)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 688999999999999 444
No 10
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.95 E-value=6.4e-27 Score=197.45 Aligned_cols=151 Identities=26% Similarity=0.412 Sum_probs=128.4
Q ss_pred CCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCceeechhHH
Q 023749 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181 (278)
Q Consensus 102 ~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~ 181 (278)
|||||||+|+.||+.||++|+|+|.++++.+| +++.++|...|++.|++.|.+++.++....++||+||+|++..+.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 79999999999999999999999999999999 99999999999999999999999999987799999999999999999
Q ss_pred Hhhh-CCcEEEEEcCHHHHHhh--hcCCCCC-CChH--HHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHH
Q 023749 182 ALLR-HGISLWIDVPPGMVARM--DHSGFPE-SEVL--PQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTE 254 (278)
Q Consensus 182 ~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~-~~~~--~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpe 254 (278)
+.|+ .+.+|||++|++++.+| ....||. .+.. ..+...+.+|.+.|. .++.+|+ +++.+|+
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~------------~~~~~~~ 147 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAADIVVD------------TDGSPPE 147 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEE------------TSSCHHH
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEe------------CCCCCHH
Confidence 9998 89999999999999999 3334552 1111 234455558999998 5889988 5778889
Q ss_pred HHHHHHHHHhh
Q 023749 255 DMTLEVKWLYN 265 (278)
Q Consensus 255 eva~~I~~~i~ 265 (278)
+++++|++.|+
T Consensus 148 ~i~~~i~~~l~ 158 (158)
T PF01202_consen 148 EIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.94 E-value=6.4e-25 Score=184.94 Aligned_cols=163 Identities=33% Similarity=0.494 Sum_probs=140.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEe
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~ 170 (278)
+++++|+|+|++||||||+|+.||+.+|++++|.|.++++..| .++.+++...|+..|++.+..++.++....++||.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST 80 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 5788999999999999999999999999999999999999888 788888888899999999999999888766678888
Q ss_pred CCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hc-CCCCC---CChHHHHHHHHHHhhhcccc-CcEEEecCcccccc
Q 023749 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DH-SGFPE---SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL 243 (278)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~-r~rp~---~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~ 243 (278)
|++++..+.+++.|+ .+++|||++|++.+.+| .. ..++. .+..+.+...+.++.+.|.. +|++||
T Consensus 81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~id-------- 152 (175)
T PRK00131 81 GGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVE-------- 152 (175)
T ss_pred CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEe--------
Confidence 988888888888885 77999999999999999 33 23332 23456778888888888875 999998
Q ss_pred cccCCCCCCHHHHHHHHHHHhhh
Q 023749 244 GYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|++.+++++++.|.+++..
T Consensus 153 ----t~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 153 ----TDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred ----CCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999864
No 12
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.92 E-value=9.1e-24 Score=179.20 Aligned_cols=158 Identities=20% Similarity=0.347 Sum_probs=134.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
+.|+|+|++||||||+|+.||+++|++++|.|.+++...| +++.+++...|+..|++.|.+++..+. ...+||++|++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 6799999999999999999999999999999999999988 888999988999999999999886654 46689999999
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC----CCCC---CChHHHHHHHHHHhhhccc-cCcEEEecCcccccc
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS----GFPE---SEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQL 243 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r----~rp~---~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~ 243 (278)
+++.+.++++++ .+++|||++|++++.+| ..| .||. .+..+.+...+++|.+.|. .++++||.
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~------- 153 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDA------- 153 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcC-------
Confidence 999888888887 78999999999999999 432 2342 2334667788899988887 48888883
Q ss_pred cccCCCCCCHHHHHHHHHHHhhh
Q 023749 244 GYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
..++++++++|.+.+.+
T Consensus 154 ------~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 154 ------TQPPSQVVSEILSALAQ 170 (171)
T ss_pred ------CCCHHHHHHHHHHHHhc
Confidence 37999999999998864
No 13
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.92 E-value=1e-23 Score=196.26 Aligned_cols=168 Identities=24% Similarity=0.394 Sum_probs=145.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHc-CCCEEEEe
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA 170 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~-~~~~VI~~ 170 (278)
++.+|+|+|++||||||+|+.||+.||++|+|+|..+++..| +++.+++...|++.|+..|.+++.++.. ...+||++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~ 210 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLAT 210 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence 578999999999999999999999999999999999999998 8999999999999999999998888764 45688999
Q ss_pred CCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCC--CC---CCChHHHHHHHHHHhhhccccCcEEEecCcccccc
Q 023749 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSG--FP---ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQL 243 (278)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~--rp---~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~ 243 (278)
|++++..+.++..+. .+++|||++|++++.+| ..++ +| ..+..+.+..++++|.++|+.+|++|+
T Consensus 211 Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~-------- 282 (309)
T PRK08154 211 GGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVD-------- 282 (309)
T ss_pred CCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEE--------
Confidence 988888888887665 77899999999999999 4332 33 233457888999999999999999998
Q ss_pred cccCCCCCCHHHHHHHHHHHhhhcCCCCc
Q 023749 244 GYDDLDAVTTEDMTLEVKWLYNASISDPT 272 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i~~~~~~~~ 272 (278)
|+++++++++++|.+.+...+.-|.
T Consensus 283 ----t~~~s~ee~~~~I~~~l~~~~~~~~ 307 (309)
T PRK08154 283 ----TSGLTVAQSLARLRELVRPALGLPA 307 (309)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHhccCC
Confidence 6789999999999999987776554
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.91 E-value=2.8e-23 Score=204.10 Aligned_cols=154 Identities=23% Similarity=0.377 Sum_probs=135.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
|+|+|+|+|||||||+|+.||+.+|++++|+|.++++..| +++.++|..+|+++|+++|.++++++....++||++|+|
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg 79 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG 79 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence 4799999999999999999999999999999999999988 899999999999999999999999988767899999999
Q ss_pred eeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCC
Q 023749 174 AVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAV 251 (278)
Q Consensus 174 ~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~ 251 (278)
++.++.+++.++.+.+|||++|++++.+| ..++||. .+..+.+.++|++|.+.|+.. .+|| |+++
T Consensus 80 vv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~-~~ID------------t~~~ 146 (488)
T PRK13951 80 VVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEF-RGID------------TSKL 146 (488)
T ss_pred cccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcc-cEEE------------CCCC
Confidence 99999999988866799999999999999 6567773 223467888999999999854 3666 7889
Q ss_pred CHHHHHHHHH
Q 023749 252 TTEDMTLEVK 261 (278)
Q Consensus 252 tpeeva~~I~ 261 (278)
|+++++.+|+
T Consensus 147 s~~e~~~~iv 156 (488)
T PRK13951 147 NEWETTALVV 156 (488)
T ss_pred CHHHHHHHHH
Confidence 9988877763
No 15
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.90 E-value=1.3e-22 Score=168.17 Aligned_cols=147 Identities=34% Similarity=0.493 Sum_probs=124.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCce
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~ 174 (278)
.|+|+|++||||||+|+.||+.+|++++|.|.++++..+ .++.+++...|++.|+..+.+++..+....++||++|+++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 489999999999999999999999999999999999888 7888888888999999999888888887788999988888
Q ss_pred eechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCC--ChHHHHHHHHHHhhhcccc-CcEEEecCcccccccccCC
Q 023749 175 VQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPES--EVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGYDDL 248 (278)
Q Consensus 175 v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~--~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~~~Dt 248 (278)
+.+..+++.+. ++++|||++|++++.+| ..| .||.. ...+.+..+|++|.+.|.. ||++|+ |
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~ad~~i~------------~ 147 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREVADLTID------------T 147 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcEEEE------------C
Confidence 88776655554 78999999999999999 444 35532 2225788899999999985 999998 5
Q ss_pred CCCCHH
Q 023749 249 DAVTTE 254 (278)
Q Consensus 249 s~~tpe 254 (278)
+++|++
T Consensus 148 ~~~~~~ 153 (154)
T cd00464 148 DELSPE 153 (154)
T ss_pred CCCCCC
Confidence 677765
No 16
>PRK04182 cytidylate kinase; Provisional
Probab=99.74 E-value=5.9e-17 Score=137.27 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=99.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH---hCCCChHHHHHhhchhHh---HHHHHHHHHHHH-cCCCE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGGESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRL 166 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~---~g~~~i~ei~~~~ge~~f---r~~e~~vl~~l~-~~~~~ 166 (278)
++|+|+|++||||||+|+.||+++|++++|+|+++++. .| .++.++.. .++..+ +..+.. +..+. ..+++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERG-MSLEEFNK-YAEEDPEIDKEIDRR-QLEIAEKEDNV 77 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcC-CCHHHHHH-HhhcCchHHHHHHHH-HHHHHhcCCCE
Confidence 57999999999999999999999999999988876553 34 55555443 333332 223322 33444 44555
Q ss_pred EEEeC-CceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHH-----------HHHhhhccccCcE
Q 023749 167 VVCAG-NGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFAL-----------YKEMRDGYATADV 232 (278)
Q Consensus 167 VI~~g-~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~-----------~~er~~~Y~~AD~ 232 (278)
|+... ++++..+ ..+++|||++|++++.+| ..| +++..+....+... |..+.+.|..+|+
T Consensus 78 Vi~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~ 151 (180)
T PRK04182 78 VLEGRLAGWMAKD------YADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDL 151 (180)
T ss_pred EEEEeecceEecC------CCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccE
Confidence 55421 2222210 156899999999999999 433 34432222222222 2222222356899
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
+|| |+..+++++++.|.+.+.....
T Consensus 152 ~id------------t~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 152 VIN------------TSRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred EEE------------CCCCCHHHHHHHHHHHHHHHhc
Confidence 988 7899999999999999986543
No 17
>PRK03839 putative kinase; Provisional
Probab=99.72 E-value=7.1e-17 Score=138.20 Aligned_cols=150 Identities=17% Similarity=0.272 Sum_probs=97.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
++|+|+|+|||||||+|+.||+++|++|+|+|+++++. + +.+.+...++..|+.++..+.+.. ...++|+ +|.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vIi-dG~- 73 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-G---IGEEKDDEMEIDFDKLAYFIEEEF-KEKNVVL-DGH- 73 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-C---CcccCChhhhcCHHHHHHHHHHhc-cCCCEEE-Eec-
Confidence 47999999999999999999999999999999998753 1 233444555667787777665432 2334444 442
Q ss_pred eeechhHHHhh-hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh--hhccc-c-CcEEEecCcccccccccC
Q 023749 174 AVQSSANLALL-RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM--RDGYA-T-ADVTVSLQKVASQLGYDD 247 (278)
Q Consensus 174 ~v~~~~~~~~L-~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er--~~~Y~-~-AD~vId~~~va~~~~~~D 247 (278)
+..+ ..+++|||+++++++.+| ..|+.......+.+...+.+. ...|. . ..++||
T Consensus 74 -------~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id------------ 134 (180)
T PRK03839 74 -------LSHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVD------------ 134 (180)
T ss_pred -------cccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE------------
Confidence 1112 368899999999999999 555432111111111111110 01122 1 234555
Q ss_pred CCCCCHHHHHHHHHHHhhhcCC
Q 023749 248 LDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 248 ts~~tpeeva~~I~~~i~~~~~ 269 (278)
+++.++++++++|.+.+.+..+
T Consensus 135 ~~~~s~eev~~~I~~~l~~~~~ 156 (180)
T PRK03839 135 TTGKTPEEVVEEILELIKSGKK 156 (180)
T ss_pred CCCCCHHHHHHHHHHHHhcCCC
Confidence 6789999999999999987654
No 18
>PRK14532 adenylate kinase; Provisional
Probab=99.69 E-value=9e-16 Score=132.13 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=99.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (278)
++|+|+|+|||||||+|+.||+++|+.++++|+++++... + ..+.+++. .|+..+.++-..++...... +
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~----~ 75 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPE----A 75 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhC----c
Confidence 4699999999999999999999999999999999887531 0 22344444 35555555444444433321 2
Q ss_pred EeCCceeec--h---hHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCCC---hHHHHHHHHHHhh--
Q 023749 169 CAGNGAVQS--S---ANLA----LLR-----HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMR-- 224 (278)
Q Consensus 169 ~~g~g~v~~--~---~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~---~~~~l~~~~~er~-- 224 (278)
.+++|++++ + ...+ .++ .+++|||++|++++.+| ..| +|+... ....+...+.++.
T Consensus 76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 234445543 1 1121 222 34799999999999999 443 355432 2244554555553
Q ss_pred -hccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 225 -DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 225 -~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+.|+..+..+.. | ...+++++.++|...+.+
T Consensus 156 ~~~y~~~~~~~~i----------d-~~~~~eev~~~I~~~l~~ 187 (188)
T PRK14532 156 LPYYAGQGKLTEV----------D-GMGSIEAVAASIDAALEG 187 (188)
T ss_pred HHHHHhcCCEEEE----------E-CCCCHHHHHHHHHHHHhc
Confidence 345544444432 1 458999999999998864
No 19
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.67 E-value=3.8e-16 Score=133.21 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=100.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhc-hhHhHHHHHHHHHHHHcCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~g-e~~fr~~e~~vl~~l~~~~ 164 (278)
-+|..|+|+|++||||||+|+.|++.++ +.+++.|.+.+ .++ ... +.... .+... ....+...+...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~-~~~-~~~---~~~~~~~~~~~-~~~~l~~~l~~~g 78 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-ILG-HYG---YDKQSRIEMAL-KRAKLAKFLADQG 78 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh-hcC-CCC---CCHHHHHHHHH-HHHHHHHHHHhCC
Confidence 3688999999999999999999999986 67888877643 222 110 00000 01111 1111122233445
Q ss_pred CEEEEeCCcee--echhHHHhhhCCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccc
Q 023749 165 RLVVCAGNGAV--QSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVAS 241 (278)
Q Consensus 165 ~~VI~~g~g~v--~~~~~~~~L~~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~ 241 (278)
..||+++.+.+ ....++..+...++|||++|++++.+|..++.......+.+..++..+.+.|. .||++|++
T Consensus 79 ~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~~----- 153 (176)
T PRK05541 79 MIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVIDN----- 153 (176)
T ss_pred CEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEeC-----
Confidence 67887765433 12223333334578999999999999932221101112345566777788786 59999994
Q ss_pred cccccCCCC-CCHHHHHHHHHHHhhhcC
Q 023749 242 QLGYDDLDA-VTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 242 ~~~~~Dts~-~tpeeva~~I~~~i~~~~ 268 (278)
++ .++++++++|.+.+.+.+
T Consensus 154 -------~~~~~~~~~v~~i~~~l~~~~ 174 (176)
T PRK05541 154 -------SCRTSLDEKVDLILNKLKLRL 174 (176)
T ss_pred -------CCCCCHHHHHHHHHHHHHHhc
Confidence 44 699999999999987654
No 20
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.65 E-value=3.5e-16 Score=156.49 Aligned_cols=157 Identities=15% Similarity=0.212 Sum_probs=101.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC------ceecCchHHHHHhCCCChHHHHHh-hchhHhHHHHHHHHHHHHcCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~------~~iD~D~li~~~~g~~~i~ei~~~-~ge~~fr~~e~~vl~~l~~~~ 164 (278)
+|..|+|+|+|||||||+|+.|++.|+. .++|.|.+...+.++. .|.. +.+..++.+- .+...+...+
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~----~f~~~er~~~~~~l~-~~a~~v~~~G 465 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSEL----GFSKEDRDLNILRIG-FVASEITKNG 465 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCC----CCCHHHHHHHHHHHH-HHHHHHHhCC
Confidence 5779999999999999999999999996 8999998765444311 1111 1111111110 0111222223
Q ss_pred CEEEEeCCceee---chhHHHhhh-CC--cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEec
Q 023749 165 RLVVCAGNGAVQ---SSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSL 236 (278)
Q Consensus 165 ~~VI~~g~g~v~---~~~~~~~L~-~~--~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~ 236 (278)
..||+.. .+.. ...+++.++ .+ ++|||++|.+++.+|.+++.......+.+..++.+|.++|. .||++||
T Consensus 466 g~vI~~~-~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~ID- 543 (568)
T PRK05537 466 GIAICAP-IAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVID- 543 (568)
T ss_pred CEEEEEe-CCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEE-
Confidence 3333221 0111 134566665 34 58999999999999944433322224567788889999885 5999998
Q ss_pred CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+..++++++++|++++.+
T Consensus 544 -----------t~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 544 -----------TTNVTPDECAHKILLYLEE 562 (568)
T ss_pred -----------CCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999875
No 21
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.65 E-value=8.9e-16 Score=132.54 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=100.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHH--------------
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL-------------- 157 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl-------------- 157 (278)
+|..|+|+|++||||||+++.|+..++..+++.|..+..... ....+.+...+++.++.+|...+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~ 79 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVG 79 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCc
Confidence 467899999999999999999999888888887776543322 22223333333444444332221
Q ss_pred ---HHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCc-
Q 023749 158 ---KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD- 231 (278)
Q Consensus 158 ---~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD- 231 (278)
.+....+..||..|+..+. ....+.+. ...+|||++|.+++.+| ..|+++. .+.+.+.+ +|.+.|..+|
T Consensus 80 ~~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~---~~~i~~rl-~r~~~~~~ad~ 154 (186)
T PRK10078 80 IEIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGREN---ASEINARL-ARAARYQPQDC 154 (186)
T ss_pred HHHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCC---HHHHHHHH-HHhhhhccCCE
Confidence 1222334556765543222 22333333 45789999999999999 6665543 23454544 3455566677
Q ss_pred EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
.+|+ ++.++++++++|.+++...-
T Consensus 155 ~vi~-------------~~~s~ee~~~~i~~~l~~~~ 178 (186)
T PRK10078 155 HTLN-------------NDGSLRQSVDTLLTLLHLSQ 178 (186)
T ss_pred EEEe-------------CCCCHHHHHHHHHHHHhhcC
Confidence 5666 35799999999999997554
No 22
>PRK06762 hypothetical protein; Provisional
Probab=99.65 E-value=3.6e-15 Score=125.80 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=97.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
+++.|+|+|+|||||||+|+.|++.+ ++.+++.|.+.....+... ..+........ .........+..||.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~------~~~~~~~~~~~-~~~~~~~~~g~~vil 73 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD------GPGNLSIDLIE-QLVRYGLGHCEFVIL 73 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC------CCCCcCHHHHH-HHHHHHHhCCCEEEE
Confidence 46899999999999999999999999 5778898887765543111 00111111111 122223334455554
Q ss_pred eCCceeechh---HHHhhh--C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCccc
Q 023749 170 AGNGAVQSSA---NLALLR--H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVA 240 (278)
Q Consensus 170 ~g~g~v~~~~---~~~~L~--~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va 240 (278)
.+. ..... .+..+. . ..+|||++|++++.+| ..|++...-..+.+..+|.+++..+ .++.+++
T Consensus 74 d~~--~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~----- 145 (166)
T PRK06762 74 EGI--LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLG-VIGETIF----- 145 (166)
T ss_pred chh--hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcC-CCCeEEe-----
Confidence 332 11111 122222 2 3789999999999999 5565422223578888898888765 4677776
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhh
Q 023749 241 SQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 241 ~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
|++.+++|++++|+..+.
T Consensus 146 -------~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 146 -------TDNLSLKDIFDAILTDIG 163 (166)
T ss_pred -------cCCCCHHHHHHHHHHHhc
Confidence 578999999999998764
No 23
>PRK09169 hypothetical protein; Validated
Probab=99.65 E-value=1.3e-15 Score=165.60 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=128.1
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~ 164 (278)
.+....|.+..|+|+|++|+||||+++.|++.|++.|+|+|..+++..| ++|.++|..+| .|++.|...+.++.. .
T Consensus 2102 ~~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr-~ 2177 (2316)
T PRK09169 2102 AELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR-W 2177 (2316)
T ss_pred HHHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-C
Confidence 4444578899999999999999999999999999999999999999999 99999999988 899999999998886 6
Q ss_pred CEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCC---CCCh-------HHHHHHHHHHhhhccc-cC
Q 023749 165 RLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFP---ESEV-------LPQLFALYKEMRDGYA-TA 230 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp---~~~~-------~~~l~~~~~er~~~Y~-~A 230 (278)
..||++|+|++..+.++..|+ .|++|||..+.+++.+| ...+|| ..+. ...+.+++.+|.+.|+ .+
T Consensus 2178 ~vVLSTGGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvA 2257 (2316)
T PRK09169 2178 EVVLPAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQ 2257 (2316)
T ss_pred CeEEeCCCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhc
Confidence 789999999999999999887 89999999999999999 333454 2222 1455667889999997 69
Q ss_pred cEEEec
Q 023749 231 DVTVSL 236 (278)
Q Consensus 231 D~vId~ 236 (278)
|++|+.
T Consensus 2258 Dl~V~~ 2263 (2316)
T PRK09169 2258 DLEVAP 2263 (2316)
T ss_pred Cccccc
Confidence 999984
No 24
>PRK13975 thymidylate kinase; Provisional
Probab=99.63 E-value=2.5e-15 Score=129.72 Aligned_cols=160 Identities=20% Similarity=0.219 Sum_probs=97.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC--CceecCchHHH----HHhCC-----CChHHHHHhhchhHhHHHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF----EAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS 161 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~li~----~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~~l~ 161 (278)
++.|+|.|++||||||+++.|+++|+ +.+.+.|..+. +...+ ..+..+|...+.+.|++++.. +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence 68999999999999999999999999 44455554332 22211 112334545555555544322 21
Q ss_pred cCCCEEEEeC-----------Cceeec---hhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCC---ChHHHHHHHHHHh
Q 023749 162 SMGRLVVCAG-----------NGAVQS---SANLALLRHGISLWIDVPPGMVARM-DHSGFPES---EVLPQLFALYKEM 223 (278)
Q Consensus 162 ~~~~~VI~~g-----------~g~v~~---~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~---~~~~~l~~~~~er 223 (278)
. +.||... +|.... ..+...++++++|||++|++++.+| ..|+++.. +..+.+...|.++
T Consensus 78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~ 155 (196)
T PRK13975 78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLEL 155 (196)
T ss_pred -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 2 3455431 111110 0111112368999999999999999 66665422 2223445555554
Q ss_pred hh---ccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCC
Q 023749 224 RD---GYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISD 270 (278)
Q Consensus 224 ~~---~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~ 270 (278)
.. .+. .+.++|| +++.++++++++|.+.+..+++|
T Consensus 156 ~~~~~~~~~~~~~~Id------------~~~~~~eev~~~I~~~i~~~~~~ 194 (196)
T PRK13975 156 ANNEKFMPKYGFIVID------------TTNKSIEEVFNEILNKIKDKIPD 194 (196)
T ss_pred HhhcccCCcCCEEEEE------------CCCCCHHHHHHHHHHHHHHhCCc
Confidence 43 111 2456776 56799999999999999998876
No 25
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.62 E-value=2.3e-14 Score=120.56 Aligned_cols=151 Identities=12% Similarity=0.136 Sum_probs=90.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHh--hchhHhHHHHHHHHHHHH-cCCCEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRE--SDEKGYQQAETEVLKQLS-SMGRLVV 168 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~--~ge~~fr~~e~~vl~~l~-~~~~~VI 168 (278)
+.|+|+|++||||||+|+.|++++|+++++.|+++++.... .+..++... ........+. ..+..+. ...++||
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKID-RRIHEIALKEKNVVL 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHH-HHHHHHHhcCCCEEE
Confidence 47999999999999999999999999999998877665421 333322111 1111111112 2233333 3455666
Q ss_pred EeCC-ceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHHHHHhhhccc-----------cCcEEE
Q 023749 169 CAGN-GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYA-----------TADVTV 234 (278)
Q Consensus 169 ~~g~-g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~~~er~~~Y~-----------~AD~vI 234 (278)
.... ++... -..+++|||++|++++.+| ..| +.+.++..+.+......|...|. .-|++|
T Consensus 80 ~g~~~~~~~~------~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i 153 (171)
T TIGR02173 80 ESRLAGWIVR------EYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVI 153 (171)
T ss_pred Eecccceeec------CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEE
Confidence 4211 11110 0146899999999999999 433 44433333444333222222221 247787
Q ss_pred ecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 235 SLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 235 d~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
| |+..++++ ++.|..++
T Consensus 154 ~------------t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 154 N------------TSNWDPNN-VDIILDAL 170 (171)
T ss_pred E------------CCCCCHHH-HHHHHHHh
Confidence 7 89999999 99998775
No 26
>PRK14530 adenylate kinase; Provisional
Probab=99.61 E-value=3.1e-14 Score=125.57 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhh---------chhHhHHHHHHHHHHHH-
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRES---------DEKGYQQAETEVLKQLS- 161 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~---------ge~~fr~~e~~vl~~l~- 161 (278)
.+++|+|+|+|||||||+|+.||+++|++++++++++++..+ .++.+..... |.....+....++....
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999999999999999999988664 3332222211 21112233344444443
Q ss_pred cCCCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749 162 SMGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 162 ~~~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R 202 (278)
....+|++ |+.....+.+.|. .+++|||++|.+++.+|
T Consensus 81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~R 122 (215)
T PRK14530 81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELVDR 122 (215)
T ss_pred cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 33456664 3444444444442 67999999999999999
No 27
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.60 E-value=2.7e-14 Score=120.64 Aligned_cols=152 Identities=20% Similarity=0.274 Sum_probs=97.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh---CCCChHHHHHhhchhHh---HHHHHHHHHHHHcCCCEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA---GGESAAKAFRESDEKGY---QQAETEVLKQLSSMGRLV 167 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~---g~~~i~ei~~~~ge~~f---r~~e~~vl~~l~~~~~~V 167 (278)
+.|.+.|+|||||||+|+.||+.+|+++++++.+++++. | +++.++.. ..++.+ ..+... ...++..+++|
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~g-msl~ef~~-~AE~~p~iD~~iD~r-q~e~a~~~nvV 77 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERG-MSLEEFSR-YAEEDPEIDKEIDRR-QKELAKEGNVV 77 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcC-CCHHHHHH-HHhcCchhhHHHHHH-HHHHHHcCCeE
Confidence 579999999999999999999999999999999987754 5 88776543 333322 222222 33455556665
Q ss_pred EEeCCceeechhHHHhhh--CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHH-HH---HHHHhhhccc-------cCcE
Q 023749 168 VCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS-GFPESEVLPQL-FA---LYKEMRDGYA-------TADV 232 (278)
Q Consensus 168 I~~g~g~v~~~~~~~~L~--~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l-~~---~~~er~~~Y~-------~AD~ 232 (278)
+. |. -..| ..+ +++.|||.+|.+++++| .+| +.+..+.+... .+ ...+....|. ..|+
T Consensus 78 le-gr-----LA~W-i~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDL 150 (179)
T COG1102 78 LE-GR-----LAGW-IVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDL 150 (179)
T ss_pred Eh-hh-----hHHH-HhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEE
Confidence 53 21 1122 123 68999999999999999 444 33322222221 11 1122233343 2455
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
||| |+..+|+++..-|...+...
T Consensus 151 Vin------------Ts~~~~~~v~~il~~aid~~ 173 (179)
T COG1102 151 VIN------------TSKWDPEEVFLILLDAIDAL 173 (179)
T ss_pred EEe------------cccCCHHHHHHHHHHHHHhh
Confidence 665 89999999999988888754
No 28
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.58 E-value=1.1e-13 Score=116.28 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=95.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH-----H-hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----A-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~-----~-~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
|+|+|++||||||+|+.|++.+|++++|.|.+... . .| .... ....+.+++.+...+...+......|++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Vi~ 76 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IPLN---DDDRWPWLQNLNDASTAAAAKNKVGIIT 76 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CCCC---hhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 57999999999999999999999999999997422 1 12 2211 1233455666555544444444555776
Q ss_pred eCCceeechhHHHhhh-C--C-cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhc-cccCc-EEEecCccccc
Q 023749 170 AGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG-YATAD-VTVSLQKVASQ 242 (278)
Q Consensus 170 ~g~g~v~~~~~~~~L~-~--~-~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~-Y~~AD-~vId~~~va~~ 242 (278)
++ ......++.++ . . .+|||++|++++.+| ..|+.... ..+.+..+|.+.... +..++ .+||
T Consensus 77 ~t---~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~-~~~~i~~~~~~~~~~~~~e~~~~~id------- 145 (163)
T TIGR01313 77 CS---ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFM-KADMLESQFAALEEPLADETDVLRVD------- 145 (163)
T ss_pred ec---ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCC-CHHHHHHHHHHhCCCCCCCCceEEEE-------
Confidence 64 23444455454 2 2 579999999999999 55542111 235566666543332 32334 3566
Q ss_pred ccccCCCCCCHHHHHHHHHHHhh
Q 023749 243 LGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 243 ~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
+ ..++|++.++|.+++.
T Consensus 146 -----~-~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 146 -----I-DQPLEGVEEDCIAVVL 162 (163)
T ss_pred -----C-CCCHHHHHHHHHHHHh
Confidence 2 4689999999988774
No 29
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1e-13 Score=122.03 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=97.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------C--CCChH---HHHHh-------------hchhH-
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------G--GESAA---KAFRE-------------SDEKG- 148 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g--~~~i~---ei~~~-------------~ge~~- 148 (278)
..|.|-||+||||||+|+.||++|||.|+|++.+++... + ..+.. ++... .|++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs 84 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS 84 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence 689999999999999999999999999999998876521 1 00100 01000 00010
Q ss_pred --hH---------------HHHHHH---HHHHHcCCCEEEEeCC--ceeechhHHHhhh-CCcEEEEEcCHHHHHhh--h
Q 023749 149 --YQ---------------QAETEV---LKQLSSMGRLVVCAGN--GAVQSSANLALLR-HGISLWIDVPPGMVARM--D 203 (278)
Q Consensus 149 --fr---------------~~e~~v---l~~l~~~~~~VI~~g~--g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~ 203 (278)
.+ .....+ ..+++...+.+|..|- |.+. +. ..+-|||++++|++++| +
T Consensus 85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV-------~PdA~lKiFLtAS~e~RA~RR~~ 157 (222)
T COG0283 85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVV-------FPDAELKIFLTASPEERAERRYK 157 (222)
T ss_pred hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceE-------CCCCCeEEEEeCCHHHHHHHHHH
Confidence 11 000011 1122222222333332 1222 22 46889999999999998 2
Q ss_pred c-CCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 204 H-SGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 204 ~-r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
. ......+.++.+.+-..+|+.. ...-.+++-+.|...-++||+++|.||++++|++++.+.+
T Consensus 158 q~~~~g~~~~~e~ll~eI~~RD~~--D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~~~~ 221 (222)
T COG0283 158 QLQAKGFSEVFEELLAEIKERDER--DSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIRQKL 221 (222)
T ss_pred HHHhccCcchHHHHHHHHHHhhhc--cccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHHHhh
Confidence 1 1111122255665655666542 1223444445566667788999999999999999998543
No 30
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.57 E-value=1.7e-14 Score=122.87 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=96.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
.|.+|+|+|+|||||||+|+.|+..+. +.++|.|.+......+... ..+.....++.+. .+...+...+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~---~~~~r~~~~~~~~-~~a~~~~~~g~~ 78 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGF---SKEDRDTNIRRIG-FVANLLTRHGVI 78 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCC---ChhhHHHHHHHHH-HHHHHHHhCCCE
Confidence 578999999999999999999999883 6778999876554321111 1111233343332 111222233433
Q ss_pred EEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCccc
Q 023749 167 VVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQKVA 240 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~va 240 (278)
|+.. +... ....++.++ ...+|||++|++++.+|..++.......+.+..++.+|.+.|. .||++|+
T Consensus 79 vi~~-~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~----- 151 (175)
T PRK00889 79 VLVS-AISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECR----- 151 (175)
T ss_pred EEEe-cCCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEE-----
Confidence 4432 2222 233344333 3468999999999999942221100001224445667888885 4899988
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 241 SQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 241 ~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+..++++++++|++.+..
T Consensus 152 -------~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 152 -------TDLESLEESVDKVLQKLEE 170 (175)
T ss_pred -------CCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999863
No 31
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.55 E-value=3.3e-14 Score=124.02 Aligned_cols=157 Identities=14% Similarity=0.192 Sum_probs=95.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
-+|..|+|+|++||||||+++.|+..+ +..++|.|.+.+...+... +......+.++.+.. +...+...+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~---~~~~~~~~~~~~l~~-~a~~~~~~G~ 97 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLG---FSDADRKENIRRVGE-VAKLMVDAGL 97 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCC---cCcccHHHHHHHHHH-HHHHHhhCCC
Confidence 378899999999999999999999987 4678898887655432110 111112233333211 2223333454
Q ss_pred EEEEeCCceeechhHH----Hhhh-CCc-EEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--c-CcEEEec
Q 023749 166 LVVCAGNGAVQSSANL----ALLR-HGI-SLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--T-ADVTVSL 236 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~----~~L~-~~~-vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~-AD~vId~ 236 (278)
.||.+... .....+ +.++ .++ +|||++|++++.+|..|+.......+.+..++.+|.+ |+ . ||++|+
T Consensus 98 ~VI~~~~~--~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y~~p~~ad~~Id- 173 (198)
T PRK03846 98 VVLTAFIS--PHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-YEAPESPEIHLD- 173 (198)
T ss_pred EEEEEeCC--CCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-CCCCCCCCEEEE-
Confidence 55543211 112222 3333 455 7999999999999932321110001223345566666 76 4 899998
Q ss_pred CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|++.++++++++|++.+.+
T Consensus 174 -----------t~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 174 -----------TGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred -----------CCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999864
No 32
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.9e-13 Score=114.77 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=104.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH-----HHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
.|+++|++||||||+|+.|+++||++|+|.|++.. ++..+.. +-+++++.|...+...+...+++.+..|++
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip---LnD~DR~pWL~~i~~~~~~~l~~~q~vVlA 90 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP---LNDDDRWPWLKKIAVELRKALASGQGVVLA 90 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC---CCcccccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 79999999999999999999999999999999853 3322222 223456667777766667777777777777
Q ss_pred eCCceeechhHHHhhhC--------------CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcE-
Q 023749 170 AGNGAVQSSANLALLRH--------------GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADV- 232 (278)
Q Consensus 170 ~g~g~v~~~~~~~~L~~--------------~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~- 232 (278)
|.. +....++.|+. -.+|||.++.|++.+| .+|.-..- ..+.++.+|+--+..-. ..|+
T Consensus 91 CSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM-p~~lleSQf~~LE~p~~~e~div 166 (191)
T KOG3354|consen 91 CSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM-PADLLESQFATLEAPDADEEDIV 166 (191)
T ss_pred hHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC-CHHHHHHHHHhccCCCCCccceE
Confidence 642 23334444431 1479999999999999 65543221 23456677765443221 2232
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
.|+ ....++|++++.|.+-++-.
T Consensus 167 ~is------------v~~~~~e~iv~tI~k~~~~~ 189 (191)
T KOG3354|consen 167 TIS------------VKTYSVEEIVDTIVKMVALN 189 (191)
T ss_pred EEe------------eccCCHHHHHHHHHHHHHhh
Confidence 444 34589999999998877643
No 33
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.54 E-value=3.1e-13 Score=133.45 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=102.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-----CCChH--HHHHh--------------hc----
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-----GESAA--KAFRE--------------SD---- 145 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-----~~~i~--ei~~~--------------~g---- 145 (278)
..++.|.|.|++||||||+|+.||++||+.++|+|.+++.... +.+.. +.+.. .+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~ 361 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVW 361 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEE
Confidence 3788999999999999999999999999999999998766310 01110 00000 00
Q ss_pred ---hh------------------HhHHHHHH---HHHHHHcCCCEEEEeCC--ceeechhHHHhhhCCcEEEEEcCHHHH
Q 023749 146 ---EK------------------GYQQAETE---VLKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMV 199 (278)
Q Consensus 146 ---e~------------------~fr~~e~~---vl~~l~~~~~~VI~~g~--g~v~~~~~~~~L~~~~vV~L~a~~e~l 199 (278)
.+ .+..+... ...++...++ +|..|. |++..+. +++.|||++|++++
T Consensus 362 ~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRDigtvV~P~------AdlKIfL~As~evR 434 (512)
T PRK13477 362 INGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRDIGTHVFPD------AELKIFLTASVEER 434 (512)
T ss_pred eCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEcccceeEEcCC------CCEEEEEECCHHHH
Confidence 00 00011111 1112222233 333332 2232211 56899999999999
Q ss_pred Hhh--hc-CCCCC-CChHHHHHHHHHHhh---------hcccc-CcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 200 ARM--DH-SGFPE-SEVLPQLFALYKEMR---------DGYAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 200 ~~R--~~-r~rp~-~~~~~~l~~~~~er~---------~~Y~~-AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
.+| .. ..||. ....+.+.+.+.+|+ ++|.. ++++|| |+++|+++++++|++.+.
T Consensus 435 a~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~ID------------Ts~lsieeVv~~Il~~i~ 502 (512)
T PRK13477 435 ARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELI------------TDGLSIEEVVDKIIDLYR 502 (512)
T ss_pred HHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEE------------CCCCCHHHHHHHHHHHHH
Confidence 998 22 23443 222577888888998 88875 567887 789999999999999998
Q ss_pred hcCC
Q 023749 266 ASIS 269 (278)
Q Consensus 266 ~~~~ 269 (278)
+.++
T Consensus 503 ~~~~ 506 (512)
T PRK13477 503 DRIP 506 (512)
T ss_pred HhCc
Confidence 7544
No 34
>PRK01184 hypothetical protein; Provisional
Probab=99.54 E-value=3.3e-13 Score=115.72 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=89.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHH--------HHHHHHHc-CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET--------EVLKQLSS-MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~--------~vl~~l~~-~~ 164 (278)
+.|+|+|+|||||||+++ +++++|++++++|+++++......++.+....|+..+...+. .+...+.. ..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 479999999999999998 678899999999887766531011111111222222111111 11122222 12
Q ss_pred CEEEEeCCceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHHHHHh-----hhccccCcE
Q 023749 165 RLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYKEM-----RDGYATADV 232 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~~~er-----~~~Y~~AD~ 232 (278)
..||..|- ......+.+ . ...+|+|++|.+++.+| ..|+++.. ...+.+.+..+.. ...+..||+
T Consensus 81 ~~vvidg~---r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~ 157 (184)
T PRK01184 81 EVVVIDGV---RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADY 157 (184)
T ss_pred CcEEEeCC---CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCE
Confidence 33443331 122222222 2 33799999999999999 55665432 1123333332221 113446999
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
+|+| +.+++++..+|.+++...
T Consensus 158 vI~N-------------~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 158 MIVN-------------DSTLEEFRARVRKLLERI 179 (184)
T ss_pred EEeC-------------CCCHHHHHHHHHHHHHHH
Confidence 9985 458999999999887643
No 35
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.54 E-value=5.6e-13 Score=113.87 Aligned_cols=153 Identities=12% Similarity=0.214 Sum_probs=89.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHHHHcC--CCEE
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQLSSM--GRLV 167 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~l~~~--~~~V 167 (278)
+|+|+|+|||||||+|+.||+++|++++++++++++.....+ +.+++ ..|.....+....++.+.... ...+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcE
Confidence 489999999999999999999999999999888776532111 22222 233333334433444443321 2223
Q ss_pred EEeCCceeechhHHH----hh----hCCcEEEEEcCHHHHHhh-hcCC----CCCCChHHHHHHHHHHh-------hhcc
Q 023749 168 VCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSG----FPESEVLPQLFALYKEM-------RDGY 227 (278)
Q Consensus 168 I~~g~g~v~~~~~~~----~L----~~~~vV~L~a~~e~l~~R-~~r~----rp~~~~~~~l~~~~~er-------~~~Y 227 (278)
|..| ++.+..+.. .+ ..+++|||++|++++.+| ..|+ +.. +..+.+.+.+..+ ...|
T Consensus 80 vlDg--~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~d-d~~e~~~~r~~~y~~~~~~i~~~~ 156 (183)
T TIGR01359 80 LIDG--FPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVD-DNIESIKKRFRTYNEQTLPVIEHY 156 (183)
T ss_pred EEeC--CCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3223 222222222 11 146799999999999999 5443 232 2234443333222 1223
Q ss_pred ccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 228 ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 228 ~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
+..+ .+|| ...+++++.++|.+++
T Consensus 157 ~~~~~~~~Id-------------~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 157 ENKGKVKEIN-------------AEGSVEEVFEDVEKIF 182 (183)
T ss_pred HhCCCEEEEE-------------CCCCHHHHHHHHHHHh
Confidence 3333 3565 3479999999998876
No 36
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.5e-13 Score=113.16 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=97.5
Q ss_pred EccCCCcHHHHHHHHHHHhCCceecCchHHH-----HHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 99 ~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
+|.+||||||+|+.||++||+.|+|.|++.. ++..+..+. +++++.|...+...+..........||+|.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~---DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS-- 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN---DDDRWPWLEALGDAAASLAQKNKHVVIACS-- 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC---cchhhHHHHHHHHHHHHhhcCCCceEEecH--
Confidence 5999999999999999999999999999853 333323322 233444554444333322222333556553
Q ss_pred eeechhHHHhhh---CC-cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCc-EEEecCcccccccccC
Q 023749 174 AVQSSANLALLR---HG-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD-VTVSLQKVASQLGYDD 247 (278)
Q Consensus 174 ~v~~~~~~~~L~---~~-~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD-~vId~~~va~~~~~~D 247 (278)
.+....++.|+ .+ ..|||+.+.+++.+| ..|....- ....+..||+.-++.-...| ++||.
T Consensus 76 -ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM-~~~ll~SQfa~LE~P~~de~vi~idi----------- 142 (161)
T COG3265 76 -ALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFM-PASLLDSQFATLEEPGADEDVLTIDI----------- 142 (161)
T ss_pred -HHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCC-CHHHHHHHHHHhcCCCCCCCEEEeeC-----------
Confidence 23455667777 23 579999999999999 55543322 23567777776665443223 46663
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 023749 248 LDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 248 ts~~tpeeva~~I~~~i~~~ 267 (278)
+.++|+++++++++++..
T Consensus 143 --~~~~e~vv~~~~~~l~~~ 160 (161)
T COG3265 143 --DQPPEEVVAQALAWLKEG 160 (161)
T ss_pred --CCCHHHHHHHHHHHHhcc
Confidence 579999999999998753
No 37
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.53 E-value=2.4e-13 Score=116.06 Aligned_cols=156 Identities=12% Similarity=0.166 Sum_probs=89.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCC----hHHHHHhhch-----hHhHHHHHHHHHHHHc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDE-----KGYQQAETEVLKQLSS 162 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~----i~ei~~~~ge-----~~fr~~e~~vl~~l~~ 162 (278)
.+.|+|+|+|||||||+|+.|++.+|+.++++++++++.. +... +..++. .+. ..+..++..+...+.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~- 80 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME-SGDLVPLDTVLDLLKDAMVAALG- 80 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcccC-
Confidence 4689999999999999999999999999999988876643 2111 112221 121 111111111111111
Q ss_pred CCCEEEEeCCceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-hcCC----CCCCC---hHHHHHHHHHHhhhc---
Q 023749 163 MGRLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DHSG----FPESE---VLPQLFALYKEMRDG--- 226 (278)
Q Consensus 163 ~~~~VI~~g~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~~r~----rp~~~---~~~~l~~~~~er~~~--- 226 (278)
.+..+|..|. .........+ . .+++|||++|++++.+| ..|+ ++... ..+.+...++++.+.
T Consensus 81 ~~~~~i~dg~--~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~ 158 (188)
T TIGR01360 81 TSKGFLIDGY--PREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAY 158 (188)
T ss_pred cCCeEEEeCC--CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 2233343332 1111112222 2 56899999999999999 4443 22222 223344444444432
Q ss_pred cc-cCcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 227 YA-TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 227 Y~-~AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
|+ .+++ +|| ...+++++.++|...+.
T Consensus 159 y~~~~~~~~id-------------~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 159 YETKGKLRKIN-------------AEGTVDDVFLQVCTAID 186 (188)
T ss_pred HHhCCCEEEEE-------------CCCCHHHHHHHHHHHHh
Confidence 44 2344 555 46899999999999875
No 38
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.50 E-value=3.2e-13 Score=115.28 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=92.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHH--HHHHHHHHHcCCCEEEEeC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA--ETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~--e~~vl~~l~~~~~~VI~~g 171 (278)
|.|+|+|.||+||||+|+.|+ ++|+.+++..+++.+. | .- . -+++......-++ ....+..+....+.|+.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-~-~~-~-~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H 75 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-G-LY-T-EYDELRKSVIVDVDKLRKRLEELLREGSGIVDSH 75 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-C-Ce-e-ccCCccceEEeeHHHHHHHHHHHhccCCeEeech
Confidence 689999999999999999999 8999999998877653 2 10 0 0000000000011 1111222222344555421
Q ss_pred CceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH-----HHHHhhhccccCcEEEecCccccccc
Q 023749 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA-----LYKEMRDGYATADVTVSLQKVASQLG 244 (278)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~-----~~~er~~~Y~~AD~vId~~~va~~~~ 244 (278)
.-.++. .+++|.|.++++++.+| +.||++.+.+.+.+.+ .+.+-...+ +.++.
T Consensus 76 --------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~---~~v~e--------- 135 (180)
T COG1936 76 --------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF---EAVIE--------- 135 (180)
T ss_pred --------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CceEE---------
Confidence 112344 68999999999999999 9999986554444433 222322222 33332
Q ss_pred ccCCCCCCHHHHHHHHHHHhhh
Q 023749 245 YDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 245 ~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+||++.|||+++++|.+.++.
T Consensus 136 -vdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 136 -VDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred -EECCCCCHHHHHHHHHHHHcc
Confidence 348999999999999999984
No 39
>PRK02496 adk adenylate kinase; Provisional
Probab=99.49 E-value=1.4e-12 Score=112.01 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=91.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHHHHc----CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQLSS----MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~l~~----~~ 164 (278)
++|+|+|+|||||||+|+.||+.+|+++++.|+++++.....+ +...+ ..|.....+....++..... ..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence 5799999999999999999999999999999998876542111 11122 12332233333333333222 12
Q ss_pred CEEEEeCCceeechhHH---H-hh-----hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhh-------cc
Q 023749 165 RLVVCAGNGAVQSSANL---A-LL-----RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRD-------GY 227 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~---~-~L-----~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~-------~Y 227 (278)
.+|+ .| +....... . .+ ..+++|||++|.+++.+| ..|+++.. ..+.+.+.+..+.. .|
T Consensus 81 g~vl-dG--fPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd-~~~~~~~r~~~y~~~~~~v~~~~ 156 (184)
T PRK02496 81 GWIL-DG--FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDD-TEEVIRRRLEVYREQTAPLIDYY 156 (184)
T ss_pred CEEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344 23 22111111 1 11 146899999999999999 76766532 23444443333222 34
Q ss_pred ccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 228 ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 228 ~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
+... +.|| ...+++++.++|...+.
T Consensus 157 ~~~~~~~~Id-------------a~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 157 RDRQKLLTID-------------GNQSVEAVTTELKAALA 183 (184)
T ss_pred HhcCCEEEEE-------------CCCCHHHHHHHHHHHhC
Confidence 3222 3555 45799999999998773
No 40
>PRK06217 hypothetical protein; Validated
Probab=99.49 E-value=9.2e-13 Score=113.43 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=65.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
++|+|+|++||||||+|+.|++.+|++++++|.+++...+ .... ..+...+ .+..++..+.....+||+ |.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~~~----~~~~~~~--~~~~~~~~~~~~~~~vi~-G~- 72 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PPFT----TKRPPEE--RLRLLLEDLRPREGWVLS-GS- 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CCcc----ccCCHHH--HHHHHHHHHhcCCCEEEE-cc-
Confidence 5799999999999999999999999999999999876443 2110 0111111 122334444444566775 32
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R 202 (278)
... .....+. .+.+|||++|.+++.+|
T Consensus 73 -~~~-~~~~~~~~~d~~i~Ld~~~~~~~~R 100 (183)
T PRK06217 73 -ALG-WGDPLEPLFDLVVFLTIPPELRLER 100 (183)
T ss_pred -HHH-HHHHHHhhCCEEEEEECCHHHHHHH
Confidence 211 1111223 78999999999999999
No 41
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.49 E-value=1.1e-12 Score=112.07 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=86.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce--ecCchHHHHHhCCCChH--HH--HHh----hch----hHhHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESAA--KA--FRE----SDE----KGYQQAETEVL 157 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD~D~li~~~~g~~~i~--ei--~~~----~ge----~~fr~~e~~vl 157 (278)
+|+.|+|+|+|||||||+|+.|++.++.++ ++.|.++....+ .... +. +.. ..+ ..|.... ..+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~ 78 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPL-KCQDAEGGIEFDGDGGVSPGPEFRLLEGAWY-EAV 78 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcCh-hhcccccccccCccCCcccchHHHHHHHHHH-HHH
Confidence 478999999999999999999999987654 477877654321 0000 00 000 001 1222222 223
Q ss_pred HHHHcCCCEEEEeCCceeechhHHH---hhh--CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCc
Q 023749 158 KQLSSMGRLVVCAGNGAVQSSANLA---LLR--HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD 231 (278)
Q Consensus 158 ~~l~~~~~~VI~~g~g~v~~~~~~~---~L~--~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD 231 (278)
..++..+..||.... +......++ .+. .-..|||+||.+++.+| ..|+... ......+++.... ....|
T Consensus 79 ~~~l~~G~~VIvD~~-~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~---~~~~~~~~~~~~~-~~~~d 153 (175)
T cd00227 79 AAMARAGANVIADDV-FLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRV---PGQARKQARVVHA-GVEYD 153 (175)
T ss_pred HHHHhCCCcEEEeee-ccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCcc---chHHHHHHHHhcC-CCcce
Confidence 444444444443221 111122222 222 23679999999999999 5554321 1112222222211 12357
Q ss_pred EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
++|| |+..|++|++++|++.+
T Consensus 154 l~iD------------ts~~s~~e~a~~i~~~l 174 (175)
T cd00227 154 LEVD------------TTHKTPIECARAIAARV 174 (175)
T ss_pred EEEE------------CCCCCHHHHHHHHHHhc
Confidence 8887 78899999999999876
No 42
>PRK13808 adenylate kinase; Provisional
Probab=99.49 E-value=1.3e-12 Score=122.73 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=91.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHH-HHHc---CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~ 164 (278)
++|+|+|+|||||||+|+.|++.+|++++++++++++.... ..+.+++.. |.....++-..++. .+.. ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAAN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccC
Confidence 47999999999999999999999999999999999765321 222333322 22111222222222 2221 12
Q ss_pred CEEEEeCCceeechhHHHh----h-----hCCcEEEEEcCHHHHHhh-hcC-------C---CCCCChHHHHHHH---HH
Q 023749 165 RLVVCAGNGAVQSSANLAL----L-----RHGISLWIDVPPGMVARM-DHS-------G---FPESEVLPQLFAL---YK 221 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~----L-----~~~~vV~L~a~~e~l~~R-~~r-------~---rp~~~~~~~l~~~---~~ 221 (278)
.+||+ |++-...+.+. + ..+++|||++|++++.+| ..| + |.+.+ .+.+... |.
T Consensus 80 G~ILD---GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~-~E~i~kRL~~Y~ 155 (333)
T PRK13808 80 GFILD---GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDT-PEVLAKRLASYR 155 (333)
T ss_pred CEEEe---CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCC-HHHHHHHHHHHH
Confidence 34443 22222222221 2 257899999999999999 443 1 22222 2333322 22
Q ss_pred Hh----hhccccCcE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 222 EM----RDGYATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 222 er----~~~Y~~AD~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+. ..+|...+. +|| ...++|+|.++|..+|....
T Consensus 156 ~~t~PLl~~Y~e~~~lv~ID-------------a~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 156 AQTEPLVHYYSEKRKLLTVD-------------GMMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred HHhHHHHHHhhccCcEEEEE-------------CCCCHHHHHHHHHHHHHHHh
Confidence 22 223443333 444 46899999999999997554
No 43
>PRK14531 adenylate kinase; Provisional
Probab=99.49 E-value=1.8e-12 Score=111.67 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=88.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHH---hhchhHhHHHHHHHH-HHHHc--CCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFR---ESDEKGYQQAETEVL-KQLSS--MGR 165 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~---~~ge~~fr~~e~~vl-~~l~~--~~~ 165 (278)
.++|+++|+|||||||+|+.||+++|++++++++++++.. ++........ ..|...-.++-..++ ..+.. ...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g 81 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG 81 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence 4689999999999999999999999999999988876543 2121111111 123211111111112 22222 233
Q ss_pred EEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH---HHHH-hhh---ccc
Q 023749 166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA---LYKE-MRD---GYA 228 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~---~~~e-r~~---~Y~ 228 (278)
+|++ |++........ +. .+.+|||++|++++.+| ..|+++.+. .+.+.+ .|.+ ..+ .|.
T Consensus 82 ~ilD---Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~-~e~i~~Rl~~y~~~~~pv~~~y~ 157 (183)
T PRK14531 82 WLLD---GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDN-EAVIRNRLEVYREKTAPLIDHYR 157 (183)
T ss_pred EEEe---CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4442 23332222221 11 35799999999999999 777776432 222222 2222 222 233
Q ss_pred cCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 229 TAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 229 ~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
.-+ .+|| ...+++++..+|...+
T Consensus 158 ~~~~~~~id-------------~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 158 QRGLLQSVE-------------AQGSIEAITERIEKVL 182 (183)
T ss_pred hcCCEEEEE-------------CCCCHHHHHHHHHHHh
Confidence 222 2444 4579999999998876
No 44
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.49 E-value=5.3e-13 Score=117.70 Aligned_cols=160 Identities=12% Similarity=0.075 Sum_probs=99.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-ChHHHHHhhchhHh---------------H-----
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDEKGY---------------Q----- 150 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-~i~ei~~~~ge~~f---------------r----- 150 (278)
.+..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+... ...++...+|++.+ .
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 45689999999999999999999999999999999988876521 12345555555433 1
Q ss_pred -HHHH--------HHHHHHHcC-CCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHH
Q 023749 151 -QAET--------EVLKQLSSM-GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPESEVLPQLF 217 (278)
Q Consensus 151 -~~e~--------~vl~~l~~~-~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~ 217 (278)
.++. ++.+.+... ...++... ..+.+.++..-. .+.+|+++||.+++.+| .+++.+.++....+.
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~ 162 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDI--PLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFIN 162 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe--chhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 0110 111111111 11222111 111222221111 57899999999999999 444665444555565
Q ss_pred HHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 218 ~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.|+... ...+.||++|+| ++.+.+++..++.+.+..
T Consensus 163 ~Q~~~e-ek~~~aD~VI~N------------~g~~~~~l~~~~~~~~~~ 198 (204)
T PRK14733 163 LQISDK-EREKIADFVIDN------------TELTDQELESKLITTINE 198 (204)
T ss_pred hCCCHH-HHHHhCCEEEEC------------cCCCHHHHHHHHHHHHHH
Confidence 554321 112369999996 455899998888887764
No 45
>PLN02674 adenylate kinase
Probab=99.47 E-value=1.5e-12 Score=117.79 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=75.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~ 164 (278)
...++|+|+|+|||||+|+|+.||+++|++++++++++++.. | ..+.+++. .|+..+.++...++.+.....
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g-~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~ 106 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD-KGELVSDDLVVGIIDEAMKKP 106 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh-HHHHHHHH-cCCccCHHHHHHHHHHHHhCc
Confidence 346889999999999999999999999999999999998763 3 33455554 577777777666665554322
Q ss_pred CEEEEeCCceeec--hhH---HH----hhh-----CCcEEEEEcCHHHHHhh
Q 023749 165 RLVVCAGNGAVQS--SAN---LA----LLR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 165 ~~VI~~g~g~v~~--~~~---~~----~L~-----~~~vV~L~a~~e~l~~R 202 (278)
. ++.|++++ |++ .+ .+. .+.+|+|++|.+++.+|
T Consensus 107 ~----~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R 154 (244)
T PLN02674 107 S----CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEER 154 (244)
T ss_pred C----cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 1 12334443 222 22 121 46799999999999999
No 46
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.47 E-value=2.1e-13 Score=116.78 Aligned_cols=158 Identities=19% Similarity=0.297 Sum_probs=94.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
-+|.+|||+|++||||||+|.+|.++| | ..++|.|.+......+.. +-.+.+.+..|.+ .++.+.++..+-
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg---Fs~edR~eniRRv-aevAkll~daG~ 96 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG---FSREDRIENIRRV-AEVAKLLADAGL 96 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC---CChHHHHHHHHHH-HHHHHHHHHCCe
Confidence 467899999999999999999999988 4 446899988765542111 1122233444432 133344444443
Q ss_pred EEEEeCCceeechhHHH----hhhC--CcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---cCcEEEec
Q 023749 166 LVVCAGNGAVQSSANLA----LLRH--GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSL 236 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~----~L~~--~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~AD~vId~ 236 (278)
.||.+- +....+.++ .+.. -+-||++||.++|.+|+-+|........++.. |.-.+..|+ ++|+++|
T Consensus 97 iviva~--ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~-fTGid~pYE~P~~Pel~l~- 172 (197)
T COG0529 97 IVIVAF--ISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKN-FTGIDSPYEAPENPELHLD- 172 (197)
T ss_pred EEEEEe--eCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCC-CcCCCCCCCCCCCCeeEec-
Confidence 344321 111122232 3332 35799999999999994333221000001111 122234454 5788887
Q ss_pred CcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
|+..|+|+.++.|++++...
T Consensus 173 -----------t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 173 -----------TDRNSVEECVEQILDLLKER 192 (197)
T ss_pred -----------cccCCHHHHHHHHHHHHHhc
Confidence 78899999999999999743
No 47
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.46 E-value=6.2e-13 Score=115.93 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=90.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhHhH---------------------
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ--------------------- 150 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~fr--------------------- 150 (278)
..|.|+|++||||||+++.|++ +|++++|+|.+.++.+. .....++...+|+..+.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 99999999999888753 11123333333433221
Q ss_pred -HHHH--------HHHHHHHcC--CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHH
Q 023749 151 -QAET--------EVLKQLSSM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (278)
Q Consensus 151 -~~e~--------~vl~~l~~~--~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~ 217 (278)
.++. ++.+.+... ...|+... ..+.+.++.. ..+.+|++++|++++.+| ..| +.+.++....+.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~--pll~e~~~~~-~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~ 158 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI--PLLFENGLEK-LVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIA 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe--hHhhcCCchh-hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 0010 011111111 12333211 1111222211 157999999999999999 444 333323333343
Q ss_pred HHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 218 ~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.++.. ...-..||++|+| +.+++++..++..++..
T Consensus 159 ~Q~~~-~~~~~~ad~vI~N-------------~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 159 SQMPR-EEKLARADDVIDN-------------NGDLEELRKQVERLLQE 193 (194)
T ss_pred HhCCH-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHh
Confidence 33221 1111258999985 35899999999888753
No 48
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.45 E-value=1.6e-12 Score=117.07 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=94.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC---C--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg---~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
.|+|+|+|||||||+|+.|++.++ + .+++.|.+.+.. . .+...++..+++.+...+......+..||.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~-~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~ 73 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF-P------VWKEKYEEFIRDSTLYLIKTALKNKYSVIV 73 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh-H------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 489999999999999999999873 3 456666554332 1 011223445555555556666555556666
Q ss_pred eCCceeech--hHHHhhh-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh---hcc--ccCcEEEecC
Q 023749 170 AGNGAVQSS--ANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR---DGY--ATADVTVSLQ 237 (278)
Q Consensus 170 ~g~g~v~~~--~~~~~L~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~---~~Y--~~AD~vId~~ 237 (278)
.+....... ..+...+ . ..+|||++|.+++.+| ..|+.+.. .+.+.+++...+ ..| +.++++||.
T Consensus 74 D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~--~~~i~~l~~r~e~p~~~~~wd~~~~~vd~- 150 (249)
T TIGR03574 74 DDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP--NEVIKDMYEKFDEPGTKYSWDLPDLTIDT- 150 (249)
T ss_pred eccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC--HHHHHHHHHhhCCCCCCCCccCceEEecC-
Confidence 554322111 1111222 2 3689999999999999 55554321 234555544332 223 348888873
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 238 KVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+...++++++++|.+.+...+
T Consensus 151 ----------~~~~~~~ei~~~i~~~~~~~~ 171 (249)
T TIGR03574 151 ----------TKKIDYNEILEEILEISENKL 171 (249)
T ss_pred ----------CCCCCHHHHHHHHHHHhhccC
Confidence 234688999999999876544
No 49
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.45 E-value=3.6e-12 Score=112.45 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=64.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-----ChHHHHHhhchhHhHHHHHHHHH-HHHc---CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-----~i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~ 164 (278)
++|+|+|+|||||||+|+.||+++|++++++++++++..... .+.+++. .|.....+....++. .+.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccC
Confidence 479999999999999999999999999999998887653311 1222222 232222233233333 2322 12
Q ss_pred CEEEEeCCceeechhHHHhh----h-----CCcEEEEEcCHHHHHhh
Q 023749 165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L----~-----~~~vV~L~a~~e~l~~R 202 (278)
.+||+ | +.........+ . .+.+|+|++|.+++.+|
T Consensus 80 g~VlD-G--fPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~R 123 (215)
T PRK00279 80 GFLLD-G--FPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVER 123 (215)
T ss_pred CEEEe-c--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHH
Confidence 34443 2 22222222222 2 35799999999999999
No 50
>PLN02200 adenylate kinase family protein
Probab=99.45 E-value=5.5e-12 Score=113.34 Aligned_cols=160 Identities=11% Similarity=0.221 Sum_probs=92.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHH-HHHc--C
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS--M 163 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~-~l~~--~ 163 (278)
.+.+|+|+|+|||||||+|+.||+++|++++++++++++.....+ +.+... .|...-.++...++. .+.. .
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~ 120 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDN 120 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999998876442111 111111 122111222222222 2221 1
Q ss_pred CCEEEEeCCceeechhHHHhh------hCCcEEEEEcCHHHHHhh-hcC--CCCCCChHHHHHH---HHHHh----hhcc
Q 023749 164 GRLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHS--GFPESEVLPQLFA---LYKEM----RDGY 227 (278)
Q Consensus 164 ~~~VI~~g~g~v~~~~~~~~L------~~~~vV~L~a~~e~l~~R-~~r--~rp~~~~~~~l~~---~~~er----~~~Y 227 (278)
...|++ | ......+...+ ..+.+|||++|++++.+| ..| +|..+. .+.+.+ .|.+. ...|
T Consensus 121 ~~~ILD-G--~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~-~e~~~~Rl~~y~~~~~pv~~~y 196 (234)
T PLN02200 121 NKFLID-G--FPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDN-IDTIKKRLKVFNALNLPVIDYY 196 (234)
T ss_pred CeEEec-C--CcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 223332 3 23223332222 156899999999999999 544 344332 233322 22221 2234
Q ss_pred ccC-c-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 228 ATA-D-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 228 ~~A-D-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
+.. . ++|| .+.+++++.+.|.+.+....-
T Consensus 197 ~~~~~~~~ID-------------a~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 197 SKKGKLYTIN-------------AVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HhcCCEEEEE-------------CCCCHHHHHHHHHHHHHHcCC
Confidence 322 2 3555 356999999999999986553
No 51
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.42 E-value=2.6e-12 Score=112.35 Aligned_cols=155 Identities=19% Similarity=0.169 Sum_probs=87.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CCh-HHHHHhhchhH-----------------h-----
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESA-AKAFRESDEKG-----------------Y----- 149 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~i-~ei~~~~ge~~-----------------f----- 149 (278)
+.|.|+|++||||||+++.|++.+|++++|+|.+.++.+.. ..+ .++...+|+.. |
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 47999999999999999999998899999999998876531 111 12222222111 1
Q ss_pred -HHHHH--------HHHHHHHcC--CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHH
Q 023749 150 -QQAET--------EVLKQLSSM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQL 216 (278)
Q Consensus 150 -r~~e~--------~vl~~l~~~--~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l 216 (278)
..+|. .+.+.+... ...|+..- .++.+..+.. ..+.+||++||.+++.+| ..| +...++....+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~--pll~E~~~~~-~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri 158 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI--PLLFEAKLTD-LCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARI 158 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--HHhcCcchHh-CCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 11111 011111111 22222210 1111222211 157899999999999999 444 44332222333
Q ss_pred HHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 217 FALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 217 ~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
..++.. ...-..||++|+| +.+.+++..++.+++.
T Consensus 159 ~~Q~~~-~~k~~~aD~vI~N-------------~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 159 NAQWPL-EEKVKLADVVLDN-------------SGDLEKLYQQVDQLLK 193 (195)
T ss_pred HhCCCH-HHHHhhCCEEEEC-------------CCCHHHHHHHHHHHHh
Confidence 332211 1111259999985 4589999999887753
No 52
>PRK08356 hypothetical protein; Provisional
Probab=99.41 E-value=1.3e-11 Score=107.38 Aligned_cols=155 Identities=13% Similarity=0.176 Sum_probs=89.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CCh----H---------HHHHhhchhHhHH---HH-
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESA----A---------KAFRESDEKGYQQ---AE- 153 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i----~---------ei~~~~ge~~fr~---~e- 153 (278)
.+.|+|+|+|||||||+|+.|+ ++|+++++.++.+.+.... ... . +-+-+.|. .++. .+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~-~~~~~yG~~~ 82 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGR-YLKEKYGEDI 82 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHH-HHHHhcCcHH
Confidence 4679999999999999999996 4899999987743221100 000 0 00001111 0110 01
Q ss_pred --HHHHHHHHcCCCEEEEeCCceeechhHHHhhh--CCcEEEEEcCHHHHHhh-hcCCCCC---CChHHHHHHHHHHhhh
Q 023749 154 --TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHSGFPE---SEVLPQLFALYKEMRD 225 (278)
Q Consensus 154 --~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~--~~~vV~L~a~~e~l~~R-~~r~rp~---~~~~~~l~~~~~er~~ 225 (278)
..++..+..... ++.. |+ ....+++.|+ .+.+|||++|.+++.+| ..|+... ....+.+.+++..+..
T Consensus 83 ~~~~~~~~~~~~~~-ivid--G~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~ 158 (195)
T PRK08356 83 LIRLAVDKKRNCKN-IAID--GV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEK 158 (195)
T ss_pred HHHHHHHHhccCCe-EEEc--Cc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 122333322222 3333 33 4445555554 46899999999999999 5554321 1123445454443332
Q ss_pred cc------ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 226 GY------ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 226 ~Y------~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.| +.||++|.| +.+.++++.+|..++..
T Consensus 159 l~~~~~~~~~aD~vI~N-------------~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 159 LYHTTKLKDKADFVIVN-------------EGTLEELRKKVEEILRE 192 (195)
T ss_pred hhhhhhHHHhCcEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence 22 259999974 46999999999998864
No 53
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.41 E-value=1.3e-12 Score=112.20 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=91.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
+|..|+|+|++||||||+++.|+..+ | ..+++.|.+...+.++... -.......++.+. .+...+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~G~~ 92 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGF---SEEDRKENIRRIG-EVAKLFVRNGII 92 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCC---CHHHHHHHHHHHH-HHHHHHHcCCCE
Confidence 57899999999999999999999987 3 5678888876554331110 0111223333322 122334444555
Q ss_pred EEEeCCceeechhHHHhhh----C--CcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749 167 VVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L~----~--~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~ 238 (278)
||.+.. ......++.++ . -.+|||++|.+++.+|+.++.......+.+..+...+.++|. .||++||
T Consensus 93 VI~d~~--~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Id--- 167 (184)
T TIGR00455 93 VITSFI--SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD--- 167 (184)
T ss_pred EEEecC--CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEE---
Confidence 665431 12223333332 1 257999999999999932221100001112222334455453 5899998
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHh
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
|+..++++++++|++++
T Consensus 168 ---------t~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 168 ---------TDQNDREECVGQIIEKL 184 (184)
T ss_pred ---------CCCCCHHHHHHHHHHhC
Confidence 67899999999998764
No 54
>PRK08233 hypothetical protein; Provisional
Probab=99.40 E-value=5.3e-12 Score=107.18 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=84.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-CceecCchHHHHHhCCCChHHHHHhhch----hHhHHHHHHHHHHHHcCC--
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLVFEAAGGESAAKAFRESDE----KGYQQAETEVLKQLSSMG-- 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-~~~iD~D~li~~~~g~~~i~ei~~~~ge----~~fr~~e~~vl~~l~~~~-- 164 (278)
+++.|+|.|++||||||+|+.|++.++ ...+..|.+...... ..+.+... .+. .....+ ...+..+....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~ 78 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP-EDICKWID-KGANYSEWVLTPL-IKDIQELIAKSNV 78 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc-hhhhhhhh-ccCChhhhhhHHH-HHHHHHHHcCCCc
Confidence 467899999999999999999999996 333333333211110 01111111 011 011111 11233333323
Q ss_pred CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCC--C-CCChHHHHHHHHHHhhhccc--------cCcE
Q 023749 165 RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGF--P-ESEVLPQLFALYKEMRDGYA--------TADV 232 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~r--p-~~~~~~~l~~~~~er~~~Y~--------~AD~ 232 (278)
+.||..+......+.... ..+++|||++|.+++.+| .+|.. . .++....+...+.++.+.|. .+++
T Consensus 79 ~~vivd~~~~~~~~~~~~--~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 156 (182)
T PRK08233 79 DYIIVDYPFAYLNSEMRQ--FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADI 156 (182)
T ss_pred eEEEEeeehhhccHHHHH--HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeE
Confidence 445543211111111111 168999999999998887 33321 1 12233344444444444443 3677
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
+|+ +..+++++.++|.+.+.+.
T Consensus 157 vId-------------~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 157 VLD-------------GALSVEEIINQIEEELYRR 178 (182)
T ss_pred EEc-------------CCCCHHHHHHHHHHHHHhC
Confidence 776 3589999999999998753
No 55
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1e-13 Score=138.61 Aligned_cols=81 Identities=26% Similarity=0.201 Sum_probs=74.5
Q ss_pred cccccccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhh------hccCCcEEEEEcc
Q 023749 43 LQYSIISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIS------TELKGTSVFLVGM 101 (278)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~ 101 (278)
++.-+..+++|.+||||++|.|++|||+.+ .||+| .+||+|+.||. +..+|+.++|.||
T Consensus 367 L~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GP 446 (906)
T KOG2004|consen 367 LKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGP 446 (906)
T ss_pred HhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCC
Confidence 455588899999999999999999999998 78887 79999999998 7778999999999
Q ss_pred CCCcHHHHHHHHHHHhCCceec
Q 023749 102 NNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 102 ~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
||+|||++||.+|++||..|+.
T Consensus 447 PGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 447 PGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred CCCCcccHHHHHHHHhCCceEE
Confidence 9999999999999999998875
No 56
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.39 E-value=3.8e-12 Score=108.57 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=87.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc----eecCchHHHHH-hC----CCChHHHHHhhchhHh----------HHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY----YFDSDSLVFEA-AG----GESAAKAFRESDEKGY----------QQAE 153 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~----~iD~D~li~~~-~g----~~~i~ei~~~~ge~~f----------r~~e 153 (278)
|..|+|+|++||||||+++.|+..++.. ++..+.-.... .| ..+..++....+...| ...-
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 4689999999999999999999987542 22110000000 00 0121222221111101 0001
Q ss_pred HHHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc--cC
Q 023749 154 TEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA--TA 230 (278)
Q Consensus 154 ~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~--~A 230 (278)
..+......+..||.+|++... ...++.+....+|||++|.+++.+| ..|+++.. +.+...+ ++.+.|. .+
T Consensus 81 -~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~---~~~~~rl-~~~~~~~~~~~ 154 (179)
T TIGR02322 81 -AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGRESR---EEIEERL-ARSARFAAAPA 154 (179)
T ss_pred -HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCH---HHHHHHH-HHHhhcccccC
Confidence 1123333345567777764422 2223333356899999999999999 66666532 3444444 3445554 47
Q ss_pred cEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+++. .++.++++++.+|.+++.+
T Consensus 155 ~~~vi------------~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 155 DVTTI------------DNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred CEEEE------------eCCCCHHHHHHHHHHHHcc
Confidence 77643 1357999999999998864
No 57
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.39 E-value=2.2e-11 Score=107.06 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=63.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHH-HHHHc----CC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVL-KQLSS----MG 164 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl-~~l~~----~~ 164 (278)
+|+|+|+|||||||+|+.||+++|++++++++++++.....+ +.++.. .|...-.++-..++ ..+.. ..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 389999999999999999999999999999998876543111 122221 22211112212222 22322 12
Q ss_pred CEEEEeCCceeechhHHHhh------hCCcEEEEEcCHHHHHhh
Q 023749 165 RLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM 202 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L------~~~~vV~L~a~~e~l~~R 202 (278)
.+|++ | +.......+.| ..+.+|||++|.+++.+|
T Consensus 80 ~~ilD-G--fPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~R 120 (210)
T TIGR01351 80 GFILD-G--FPRTLSQAEALDALLKEKIDAVIELDVPDEELVER 120 (210)
T ss_pred cEEEe-C--CCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHH
Confidence 34443 2 22222222223 146899999999999999
No 58
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.38 E-value=5.6e-12 Score=110.62 Aligned_cols=156 Identities=15% Similarity=0.189 Sum_probs=90.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhchh----------------HhHHHHH-
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEK----------------GYQQAET- 154 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~ge~----------------~fr~~e~- 154 (278)
+.|.|+|.+||||||+++.|++ +|++++|+|.+..+.+.. ....++...+|+. .|.+.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4699999999999999999987 899999999887665431 1122333333332 1211100
Q ss_pred HHHHHH-------------H---cC-CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHH
Q 023749 155 EVLKQL-------------S---SM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQ 215 (278)
Q Consensus 155 ~vl~~l-------------~---~~-~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~ 215 (278)
+.++.+ . .. ...++... . .+.+.++.. ..+.+||+++|.+++.+| .+++++.++....
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-p-lL~e~g~~~-~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-P-LLVEKGLDR-KMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-e-ceeEcCccc-cCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 011111 0 11 11222211 1 111122110 157899999999999999 4446554444444
Q ss_pred HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 216 l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
+..++.. +.....||++|+| +.+++++.+++..++...
T Consensus 158 i~~Q~~~-~~k~~~ad~vI~N-------------~g~~e~l~~~v~~~~~~~ 195 (200)
T PRK14734 158 IAAQIPD-DVRLKAADIVVDN-------------NGTREQLLAQVDGLIAEI 195 (200)
T ss_pred HHhcCCH-HHHHHhCCEEEEC-------------cCCHHHHHHHHHHHHHHH
Confidence 4443322 1112369999995 468999999998887654
No 59
>PRK14527 adenylate kinase; Provisional
Probab=99.38 E-value=4.1e-11 Score=103.74 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=87.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CChHHHHHh---hchhHhHHHHHHHHHH-HHc--CC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFRE---SDEKGYQQAETEVLKQ-LSS--MG 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~i~ei~~~---~ge~~fr~~e~~vl~~-l~~--~~ 164 (278)
+++.|+++|+|||||||+|+.|++++|+.++++|+++.+.... ......... .|...-.+.-..++.+ +.. ..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~ 84 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV 84 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999999999999999999999988765431 111111111 1211111111222222 222 12
Q ss_pred CEEEEeCCceeechhHHHhh----h-----CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHHHHHh----hh-
Q 023749 165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFALYKEM----RD- 225 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L----~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~~~er----~~- 225 (278)
..|++ |+.......+.+ + ...+|||++|.+++.+| ..| +|+... .+.+.+.++++ .+
T Consensus 85 ~~VlD---Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~-~~~~~~R~~~y~~~~~~v 160 (191)
T PRK14527 85 RVIFD---GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDN-EETVRRRQQVYREQTQPL 160 (191)
T ss_pred cEEEc---CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCC-HHHHHHHHHHHHHHhHHH
Confidence 34443 233222222211 1 34689999999999999 444 344322 23332222211 11
Q ss_pred --ccccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 226 --~Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
.|+.-. .+|| ...+++++.++|...+
T Consensus 161 ~~~y~~~~~~~~id-------------~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 161 VDYYEARGHLKRVD-------------GLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHhcCCEEEEE-------------CCCCHHHHHHHHHHhh
Confidence 233211 3454 5689999999998775
No 60
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.38 E-value=1.1e-11 Score=101.47 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=61.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCce
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~ 174 (278)
.|+|+|++||||||+|+.||+++|+++++.|.+..+..+ ....... ....++....+.+.++....++|+. |...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vid-g~~~ 75 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQRELAKKPGIVLE-GRDI 75 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEE-eeee
Confidence 489999999999999999999999999999965443322 0000000 0112222223344455555566664 2211
Q ss_pred eechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749 175 VQSSANLALLR-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 175 v~~~~~~~~L~-~~~vV~L~a~~e~l~~R 202 (278)
- +..+. .+++|||++|++.+.+|
T Consensus 76 ~-----~~~~~~~~~~i~l~~~~~~r~~R 99 (147)
T cd02020 76 G-----TVVFPDADLKIFLTASPEVRAKR 99 (147)
T ss_pred e-----eEEcCCCCEEEEEECCHHHHHHH
Confidence 0 00122 57899999999999988
No 61
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.37 E-value=3.9e-11 Score=107.18 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=35.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~ 130 (278)
..++|.|.|++||||||+|+.||+++|++++|+|.+++.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 457899999999999999999999999999999997554
No 62
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.37 E-value=5.8e-12 Score=105.29 Aligned_cols=150 Identities=20% Similarity=0.288 Sum_probs=96.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhH--hHHHHHHHHHHHH---cCCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG--YQQAETEVLKQLS---SMGR 165 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~--fr~~e~~vl~~l~---~~~~ 165 (278)
-..++|+++|.||+||||+|..||+.+|+++++..+++++.. ++..+.+++ .---|..++..|. ..+.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-------LYEGYDEEYKCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-------chhcccccccCccccHHHHHHHHHHHHhcCC
Confidence 346799999999999999999999999999999998887631 222222221 0001334444332 2355
Q ss_pred EEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCC----hH-HHHHHHHHHhhhccccCcEEEecCcc
Q 023749 166 LVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESE----VL-PQLFALYKEMRDGYATADVTVSLQKV 239 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~----~~-~~l~~~~~er~~~Y~~AD~vId~~~v 239 (278)
+||+.. |+-+.+..| .++||.|.+|.+++.+| ..|++.... .. +.+.-.+++-...|. +++|+..
T Consensus 78 ~IVDyH-gCd~Fperw----fdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~-~~iV~eL--- 148 (176)
T KOG3347|consen 78 NIVDYH-GCDFFPERW----FDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS-PKIVVEL--- 148 (176)
T ss_pred cEEeec-ccCccchhh----eeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC-Ccceeec---
Confidence 566532 222223322 57899999999999999 888865322 22 223335566566665 6788874
Q ss_pred cccccccCCCCCCHHHHHHHHHHHhh
Q 023749 240 ASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 240 a~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
...++|++...|-+.++
T Consensus 149 ---------~s~~~Eem~~ni~ri~~ 165 (176)
T KOG3347|consen 149 ---------QSETKEEMESNISRILN 165 (176)
T ss_pred ---------CcCCHHHHHHHHHHHHH
Confidence 45677888877655543
No 63
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.36 E-value=3.8e-11 Score=106.80 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=34.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~ 130 (278)
.+.|.|.|++||||||+++.|++++|+++++++.+.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~ 39 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence 36899999999999999999999999999999987644
No 64
>PRK14528 adenylate kinase; Provisional
Probab=99.36 E-value=6.6e-12 Score=108.76 Aligned_cols=152 Identities=14% Similarity=0.177 Sum_probs=85.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHHHHHHH-HHHHc---CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVL-KQLSS---MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~e~~vl-~~l~~---~~ 164 (278)
++|+|+|+|||||||+|+.|++.+|++++++|+++++.... .. +..++ ..|+..-.+.-..++ ..+.. ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~-~~g~lvp~~~~~~~~~~~l~~~~~~~ 80 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYM-DAGDLVPDSVVIGIIKDRIREADCKN 80 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHH-hCCCccCHHHHHHHHHHHHhCcCccC
Confidence 57999999999999999999999999999999998774421 11 11111 122211111111122 22221 12
Q ss_pred CEEEEeCCceeechhHHH----hh-----hCCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHHH----HHhhh-
Q 023749 165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFALY----KEMRD- 225 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~----~L-----~~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~~----~er~~- 225 (278)
.+||+ | +.......+ .+ ..+++|||++|.+++.+| ..| +|+.+. .+.+.+.+ +...+
T Consensus 81 g~viD-G--~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~-~e~i~~Rl~~y~~~~~pv 156 (186)
T PRK14528 81 GFLLD-G--FPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDN-EATIKNRLDNYNKKTLPL 156 (186)
T ss_pred cEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCC-HHHHHHHHHHHHHHhHHH
Confidence 24443 2 222222111 12 146899999999999999 444 555432 33333322 22222
Q ss_pred --ccccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHH
Q 023749 226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWL 263 (278)
Q Consensus 226 --~Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~ 263 (278)
.|+.-. .+|| ...+++++...|...
T Consensus 157 ~~~y~~~~~~~~i~-------------~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 157 LDFYAAQKKLSQVN-------------GVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHhCCCEEEEE-------------CCCCHHHHHHHHHHh
Confidence 233222 2444 567999999988765
No 65
>PLN02422 dephospho-CoA kinase
Probab=99.35 E-value=1.6e-11 Score=110.24 Aligned_cols=157 Identities=11% Similarity=0.035 Sum_probs=90.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-C-ChHHHHHhhchhHhH---------------------
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E-SAAKAFRESDEKGYQ--------------------- 150 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~-~i~ei~~~~ge~~fr--------------------- 150 (278)
+.|.|+|.+||||||+++.|+ ++|++++|+|.+.++.+.. . ...++...+|++.+.
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 369999999999999999998 5899999999998776531 0 122333344433221
Q ss_pred -HHHH--------HHHHHHH----cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHH
Q 023749 151 -QAET--------EVLKQLS----SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQ 215 (278)
Q Consensus 151 -~~e~--------~vl~~l~----~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~ 215 (278)
.+|. ++...+. .....++... ..+.+.++.. ..+.+|+++||++++.+| ..| +...++....
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~-~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI--PLLFETKMDK-WTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe--hhhhhcchhh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1111 0111110 1112222211 1112222211 157899999999999999 544 4433333333
Q ss_pred HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 216 l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+..++.. ...-+.||++|+| +.+.|++..++.++++...
T Consensus 158 i~~Q~~~-eek~~~AD~VI~N-------------~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 158 INAQMPL-DWKRSKADIVIDN-------------SGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHcCCh-hHHHhhCCEEEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence 4333211 0112269999995 4599999999988876543
No 66
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.35 E-value=9.7e-12 Score=119.74 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=94.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhchh----------------HhHHHHH-
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEK----------------GYQQAET- 154 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~ge~----------------~fr~~e~- 154 (278)
+.|.|+|++||||||+++.|++ +|++++|+|.+.++.+.. ..+.++++.+|+. .|.+.+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3699999999999999999987 899999999999886641 1234555555554 3322211
Q ss_pred HHHHHH-------------Hc-CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHHH
Q 023749 155 EVLKQL-------------SS-MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLFA 218 (278)
Q Consensus 155 ~vl~~l-------------~~-~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~~ 218 (278)
..++.+ .. .+..++..+.. .+.+..+.. ..+.+|||++|.+++.+| .+|+...++....+..
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eip-LL~E~~~~~-~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~ 158 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIP-LLVESGMAP-LFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAA 158 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEee-eeecCCchh-hCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 111111 11 11122222111 222222211 157899999999999999 4455543333333333
Q ss_pred HHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 219 ~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
++.. +..-..||++|+| +.+++++..++.++++...
T Consensus 159 Q~~~-e~k~~~AD~vIdN-------------~~s~e~l~~~v~~~l~~~~ 194 (395)
T PRK03333 159 QASD-EQRRAVADVWLDN-------------SGTPDELVEAVRALWADRL 194 (395)
T ss_pred cCCh-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHH
Confidence 2111 1112369999985 4689999999888775543
No 67
>PLN02459 probable adenylate kinase
Probab=99.34 E-value=4.3e-11 Score=109.10 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=64.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHH-HHHcC----
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSSM---- 163 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~-~l~~~---- 163 (278)
++|+|+|+|||||||+|+.||+.+|+.++++++++++.... ..+.+++. .|.-.-.++-..++. ++...
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~-~G~lVPdeiv~~ll~~~l~~~~~~~ 108 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN-QGKLVPDEIIFSLLSKRLEAGEEEG 108 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHH-cCCccCHHHHHHHHHHHHhcccccC
Confidence 67999999999999999999999999999999998765321 11222222 233222222222222 22211
Q ss_pred -CCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749 164 -GRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 164 -~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R 202 (278)
..+|++ |++-+..+...|. .+.+|+|++|.+++.+|
T Consensus 109 ~~g~iLD---GFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~R 149 (261)
T PLN02459 109 ESGFILD---GFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEK 149 (261)
T ss_pred CceEEEe---CCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 122221 2232222223332 46899999999999999
No 68
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.34 E-value=1.2e-11 Score=102.54 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=75.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH-----HhCCCChHHHHHhhchhHhHHHHHHHHHHHH-cCCCEEE
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVV 168 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~-----~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-~~~~~VI 168 (278)
.|+|+|+|||||||+|+.|++.++++++|.|.+... ...+.... ....+.+++.+.......+. ....+|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 478999999999999999999999999999998763 11111111 11134445555444444443 4455666
Q ss_pred EeCCceeechhHHHhhh------CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh
Q 023749 169 CAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR 224 (278)
Q Consensus 169 ~~g~g~v~~~~~~~~L~------~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~ 224 (278)
+++. .....+..++ .-.+|||++|.+++.+| ..|...... .+.+..+++..+
T Consensus 78 d~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~ 136 (150)
T cd02021 78 ACSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMP-ADLLDSQFETLE 136 (150)
T ss_pred Eecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCCCC-HHHHHHHHHHhc
Confidence 6442 2233333333 12589999999999999 555321111 345666655443
No 69
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.34 E-value=2.1e-11 Score=105.35 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=84.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC--hHHHHHhhchhH----------------hHHH----
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--AAKAFRESDEKG----------------YQQA---- 152 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~--i~ei~~~~ge~~----------------fr~~---- 152 (278)
.|+|+|.+||||||+++.|++..|++++|+|.+.++.+.... ..++...+|... |.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999777999999999877664111 122333333221 1111
Q ss_pred --H--------HHHHHHHHc---CCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHH
Q 023749 153 --E--------TEVLKQLSS---MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQL 216 (278)
Q Consensus 153 --e--------~~vl~~l~~---~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l 216 (278)
| .++.+.+.. .+..|+... . .+.+.. ... .+.+||+++|.+++.+| ..| +.+.++....+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-p-ll~e~~--~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~ 156 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-P-LLFENK--LRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRL 156 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-h-HhhhCC--cHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 111111111 112333211 0 111111 112 67899999999999999 544 44433333333
Q ss_pred HHHHHHhhhccc---cCcEEEecCcccccccccCCCCCCHHHHHHHHH
Q 023749 217 FALYKEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVK 261 (278)
Q Consensus 217 ~~~~~er~~~Y~---~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~ 261 (278)
..+ .+.+. .||++|+| +.++|++..++.
T Consensus 157 ~~q----~~~~~~~~~ad~vI~N-------------~~~~e~l~~~~~ 187 (188)
T TIGR00152 157 ASQ----MDIEERLARADDVIDN-------------SATLADLVKQLE 187 (188)
T ss_pred Hhc----CCHHHHHHhCCEEEEC-------------CCCHHHHHHHHh
Confidence 332 22222 59999985 469999988764
No 70
>PRK04040 adenylate kinase; Provisional
Probab=99.33 E-value=4.5e-11 Score=104.02 Aligned_cols=159 Identities=15% Similarity=0.179 Sum_probs=89.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHHhC--CC-ChHHHHHhhchh---HhHHHHHHHHHHHHcCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAG--GE-SAAKAFRESDEK---GYQQAETEVLKQLSSMG 164 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~~g--~~-~i~ei~~~~ge~---~fr~~e~~vl~~l~~~~ 164 (278)
++.|+|+|+|||||||+++.|++++ ++.+++.++++.+... +. .-.+-+...... .++......+.++....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 5789999999999999999999999 8999999998755331 01 001111111111 11222222233333333
Q ss_pred CEEEEeCCceeechh---------HHHhhhCCcEEEEEcCHHHHHhh-h---cCCCCCCCh--HHHHHHHHHHhhhccc-
Q 023749 165 RLVVCAGNGAVQSSA---------NLALLRHGISLWIDVPPGMVARM-D---HSGFPESEV--LPQLFALYKEMRDGYA- 228 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~---------~~~~L~~~~vV~L~a~~e~l~~R-~---~r~rp~~~~--~~~l~~~~~er~~~Y~- 228 (278)
..|++ |..++..+. ....+..+.+|+|.+|++++.+| . .|+|+.+.. .+.....-......|.
T Consensus 82 ~~~~~-~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~ 160 (188)
T PRK04040 82 PVIVD-THATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAV 160 (188)
T ss_pred CEEEe-eeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34554 332222211 11223367899999999998888 2 466664331 1222121111112222
Q ss_pred ---cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 229 ---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 229 ---~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
..+++|.|+ +++ +|+.++++.+++
T Consensus 161 ~~g~~~~iI~N~-----------d~~-~e~a~~~i~~ii 187 (188)
T PRK04040 161 LTGATVKIVENR-----------EGL-LEEAAEEIVEVL 187 (188)
T ss_pred hcCCeEEEEECC-----------CCC-HHHHHHHHHHHh
Confidence 366777642 344 999999998876
No 71
>PRK14526 adenylate kinase; Provisional
Probab=99.33 E-value=7.5e-11 Score=104.49 Aligned_cols=105 Identities=10% Similarity=0.169 Sum_probs=64.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHHH-HHc---CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLKQ-LSS---MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~~-l~~---~~ 164 (278)
++|+|+|+|||||||+++.||+.+|++++++++++++.... ..+.+++. .|.....+.-..++.+ +.. ..
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~~~~ 79 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIKNND 79 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcccccC
Confidence 46899999999999999999999999999999998764321 22334433 2332222222222322 221 12
Q ss_pred CEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749 165 RLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R 202 (278)
.+|++ |+.-...+...|. ...+|+|++|.+++.+|
T Consensus 80 g~ilD---GfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R 118 (211)
T PRK14526 80 NFILD---GFPRNINQAKALDKFLPNIKIINFLIDEELLIKR 118 (211)
T ss_pred cEEEE---CCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 34442 2322222223332 23578899999999999
No 72
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.31 E-value=3.6e-11 Score=111.25 Aligned_cols=142 Identities=18% Similarity=0.196 Sum_probs=85.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
....|+|+|++||||||+++.|+ .+|+.++|.-. + +++.. |.+ . +.+-.......+...
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~----------~-~L~~~-----l~~---~-~~~~~~~~~~av~iD 63 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP----------P-SLLPK-----LVE---L-LAQSGGIRKVAVVID 63 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC----------H-HHHHH-----HHH---H-HHhcCCCCCeEEEEc
Confidence 45689999999999999999996 57998886422 1 11111 110 0 000000111222111
Q ss_pred C--ceee--chhHHHhhh-CC---cEEEEEcCHHHHHhh--h-cCCCCCCChHHHHHHHHHHh---hhccccCcEEEecC
Q 023749 172 N--GAVQ--SSANLALLR-HG---ISLWIDVPPGMVARM--D-HSGFPESEVLPQLFALYKEM---RDGYATADVTVSLQ 237 (278)
Q Consensus 172 ~--g~v~--~~~~~~~L~-~~---~vV~L~a~~e~l~~R--~-~r~rp~~~~~~~l~~~~~er---~~~Y~~AD~vId~~ 237 (278)
. .... ...++..|+ .+ .+|||+++.+++.+| . ++.||........+.++++| .+.|+.||++||
T Consensus 64 ~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivID-- 141 (288)
T PRK05416 64 VRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVID-- 141 (288)
T ss_pred cCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEE--
Confidence 1 1011 123444554 34 579999999999999 3 34566322122333344555 455567999998
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 238 KVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+++|++|++++|.+.+..
T Consensus 142 ----------Ts~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 142 ----------TSELSVHQLRERIRERFGG 160 (288)
T ss_pred ----------CCCCCHHHHHHHHHHHHhc
Confidence 7899999999999999865
No 73
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.30 E-value=5.3e-11 Score=107.71 Aligned_cols=159 Identities=14% Similarity=0.043 Sum_probs=92.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC--hHHHHHhhchhH----------------hH-----
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--AAKAFRESDEKG----------------YQ----- 150 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~--i~ei~~~~ge~~----------------fr----- 150 (278)
..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+.... ..++.+.+|... |.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3699999999999999999998899999999999887654111 112222222211 11
Q ss_pred -HHHH--------HHHHHHH-------------cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-C
Q 023749 151 -QAET--------EVLKQLS-------------SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-G 206 (278)
Q Consensus 151 -~~e~--------~vl~~l~-------------~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~ 206 (278)
.+|. ++.+.+. .....|+... ..+.+.++...-.|.+|++++|.+++.+| ..| +
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev--PLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g 159 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA--PTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG 159 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe--chhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 1110 1111111 0111222211 12223332111158999999999999999 444 5
Q ss_pred CCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 207 FPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 207 rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.+.++....+..++...+ .-..||++|+| .+..|++++..+|.+++..
T Consensus 160 ~s~eea~~Ri~~Q~~~~e-k~~~aD~VI~N-----------~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 160 FSKEEALQRIGSQMPLEE-KRRLADYIIEN-----------DSADDLDELRGSVCDCVAW 207 (244)
T ss_pred CCHHHHHHHHHhCCCHHH-HHHhCCEEEEC-----------CCCCCHHHHHHHHHHHHHH
Confidence 544444444544433211 11269999985 1226999999999987754
No 74
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.30 E-value=1.4e-11 Score=124.98 Aligned_cols=157 Identities=14% Similarity=0.191 Sum_probs=98.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
++..|+++|+|||||||+|+.|++.| ++.++|.|.+.....++.. +-.+....+++.+- .+...+...+..
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l~-~~a~~~~~~G~~ 534 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRVA-EVARLMADAGLI 534 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHHH-HHHHHHHhCCCE
Confidence 58899999999999999999999997 3578999998764433111 11112233444331 112223333444
Q ss_pred EEEeCCceeechhHHHhhh-----CC-cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749 167 VVCAGNGAVQSSANLALLR-----HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L~-----~~-~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~ 238 (278)
||.+. . ......++.++ .. .+|||++|.+++.+|+.|+.......+.+..++..|.+++. .||++||
T Consensus 535 Vivda-~-~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id--- 609 (632)
T PRK05506 535 VLVSF-I-SPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLD--- 609 (632)
T ss_pred EEEEC-C-CCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEe---
Confidence 44432 1 12223333322 23 68999999999999944443211112345555666666542 4888988
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+++.++++++++|++++..
T Consensus 610 ---------~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 610 ---------TTGRSPEELAEQVLELLRR 628 (632)
T ss_pred ---------CCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999864
No 75
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.30 E-value=1.1e-10 Score=99.09 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=86.1
Q ss_pred EccCCCcHHHHHHHHHHHhCCceecCchHHH-----HH-hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EA-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 99 ~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~~-~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~ 172 (278)
+|++||||||+++.|++.+|..++|.|.+.. .. .| ....+ .....+...++..++......+..||.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~viv~s- 75 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDAAFAMQRTNKVSLIVCS- 75 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CCCCh---hhHHHHHHHHHHHHHHHHHcCCceEEEEe-
Confidence 5999999999999999999999999997532 11 12 21111 11122333333333333333344444432
Q ss_pred ceeechhHHHhhh-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCc-EEEecCcccccccc
Q 023749 173 GAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TAD-VTVSLQKVASQLGY 245 (278)
Q Consensus 173 g~v~~~~~~~~L~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD-~vId~~~va~~~~~ 245 (278)
+ .....++.++ . -..|||++|.+++.+| ..|.... ...+.+..++...++.-. ..+ ++||
T Consensus 76 -~-~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-a~~~vl~~Q~~~~ep~~~~e~~~~~id---------- 142 (163)
T PRK11545 76 -A-LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF-FKTQMLVTQFETLQEPGADETDVLVVD---------- 142 (163)
T ss_pred -c-chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCC-CCHHHHHHHHHHcCCCCCCCCCEEEEe----------
Confidence 1 1233344444 2 2689999999999999 5443222 234566666655554322 122 3444
Q ss_pred cCCCCCCHHHHHHHHHHHhhh
Q 023749 246 DDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 246 ~Dts~~tpeeva~~I~~~i~~ 266 (278)
++ .+++++++++...+.+
T Consensus 143 --~~-~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 143 --ID-QPLEGVVASTIEVIKK 160 (163)
T ss_pred --CC-CCHHHHHHHHHHHHHH
Confidence 44 5899999999998854
No 76
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.29 E-value=1.3e-10 Score=104.21 Aligned_cols=107 Identities=9% Similarity=0.112 Sum_probs=64.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhch----hHhHHHHHHHHHHHH-
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDE----KGYQQAETEVLKQLS- 161 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge----~~fr~~e~~vl~~l~- 161 (278)
.+++|+|+|+|||||||+|+.||+++|++++++|+++++.... .. +.++... |. +....+-...+.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhcc
Confidence 4577999999999999999999999999999999999875431 12 2222221 31 111111111222211
Q ss_pred c-CCCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749 162 S-MGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 162 ~-~~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R 202 (278)
. ...+|++ | ++-.......|. .+++|+|++|.+++.+|
T Consensus 84 ~~~~g~iLD-G--fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R 126 (229)
T PTZ00088 84 DCFKGFILD-G--FPRNLKQCKELGKITNIDLFVNIYLPRNILIKK 126 (229)
T ss_pred ccCceEEEe-c--CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 1 1223332 2 222222222232 56899999999999998
No 77
>PRK14529 adenylate kinase; Provisional
Probab=99.27 E-value=1.9e-10 Score=102.85 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=65.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-C----ChHHHHHhhchhHhHHHHHHHHHH-HHc--CCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E----SAAKAFRESDEKGYQQAETEVLKQ-LSS--MGR 165 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~----~i~ei~~~~ge~~fr~~e~~vl~~-l~~--~~~ 165 (278)
++|+|+|+|||||||+|+.|++.+|++++++.+++++.... . .+.++. ..|.....++-..++.+ +.. ...
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence 47999999999999999999999999999998888765421 1 122222 22433333333333333 222 122
Q ss_pred EEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh
Q 023749 166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R 202 (278)
+|++ |++-...+.+. +. .+.+|+|++|.+++.+|
T Consensus 80 ~iLD---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~R 122 (223)
T PRK14529 80 WLLD---GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR 122 (223)
T ss_pred EEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 3332 23222222221 21 46899999999999999
No 78
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.27 E-value=7.4e-11 Score=120.42 Aligned_cols=162 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChH---HHHH---hh------------chh-
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAA---KAFR---ES------------DEK- 147 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~---ei~~---~~------------ge~- 147 (278)
.+.|.+.||+||||||+|+.||++||++|+|++.+++... + .++. .+.. .. +++
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAG-VALDDEAAIAALARGLPVRFEGDRIWLGGEDV 520 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcC-cCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence 4589999999999999999999999999999999887641 1 1111 1110 00 000
Q ss_pred -----------------HhHHHHHHH---HHHHHcCCCEEEEeCC--ceeechhHHHhhhCCcEEEEEcCHHHHHhh--h
Q 023749 148 -----------------GYQQAETEV---LKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMVARM--D 203 (278)
Q Consensus 148 -----------------~fr~~e~~v---l~~l~~~~~~VI~~g~--g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~ 203 (278)
.+..+...+ ..++....+ ||..|. |.++.++ +++-|||+++++++++| +
T Consensus 521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~-~v~eGRdigtvv~p~------a~~kifl~a~~~~Ra~Rr~~ 593 (661)
T PRK11860 521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPG-LVADGRDMGTVIFPD------AALKVFLTASAEARAERRYK 593 (661)
T ss_pred hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCC-EEEECCCCccEECCC------CCeEEEEECChhHHHHHHHH
Confidence 001111111 112222233 333342 2232221 56899999999999998 2
Q ss_pred ---cCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 204 ---HSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 204 ---~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+++.. .+ .+.+.+...+|+..-. ...+++-+.|+..-++||+.+|+||++++|++++++
T Consensus 594 ~~~~~~~~-~~-~~~~~~~~~~Rd~~d~--~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 594 QLISKGIS-AN-IADLLADLEARDARDT--QRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHhCCCC-CC-HHHHHHHHHHHhHHhh--cCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 23332 12 3344444445442111 111112222333445679999999999999999975
No 79
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.27 E-value=1.5e-10 Score=101.98 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=89.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC---hHHHHHhhchhH--------------------h
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES---AAKAFRESDEKG--------------------Y 149 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~---i~ei~~~~ge~~--------------------f 149 (278)
...|.|+|.+||||||+++.|++ +|++++|+|.+..+.+. .. ...+...+|... |
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~-~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQV-TDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcC-CcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 35789999999999999999986 89999999988776543 11 011111111111 1
Q ss_pred H------HHHH--------HH---HHHHHcCC-CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCC-
Q 023749 150 Q------QAET--------EV---LKQLSSMG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE- 209 (278)
Q Consensus 150 r------~~e~--------~v---l~~l~~~~-~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~- 209 (278)
. .++. .+ +......+ ..|+. +.. .+.+..+.. ..+.+|++++|.+++.+| .+|++..
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~-e~p-LL~e~~~~~-~~d~ii~V~a~~e~~~~Rl~~R~~~s~ 159 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVK-EAA-ILFESGGDA-GLDFIVVVAADTELRLERAVQRGMGSR 159 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEE-Eee-eeeecCchh-cCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 1 0010 00 11111111 33432 222 222332211 157899999999999999 6665432
Q ss_pred CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 210 SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 210 ~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
++....+..++..... .+.+|++|+| +.++|++..+|.+++...
T Consensus 160 e~~~~Ri~~q~~~~~~-~~~ad~vI~N-------------~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 160 EEIRRRIAAQWPQEKL-IERADYVIYN-------------NGTLDELKAQTEQLYQVL 203 (208)
T ss_pred HHHHHHHHHcCChHHH-HHhCCEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence 2222333333222111 1358999985 468999999998887653
No 80
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.27 E-value=3.4e-11 Score=103.72 Aligned_cols=161 Identities=13% Similarity=0.133 Sum_probs=95.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC------CChHHHHHhhchhHhHHHHHHHHHH-HHcC-
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG------ESAAKAFRESDEKGYQQAETEVLKQ-LSSM- 163 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~------~~i~ei~~~~ge~~fr~~e~~vl~~-l~~~- 163 (278)
+.++||+.|.|||||-|++..+++++||.|+++++++++.... .-+.++.+ .|.-...++-..+|+. +.+.
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999998876541 11222222 2332222322233322 2221
Q ss_pred -CCEEEEeCCceeechhHHHhhh------CCcEEEEEcCHHHHHhh-hcCC----CCCCChHHHHHHH----HHHhhh--
Q 023749 164 -GRLVVCAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSG----FPESEVLPQLFAL----YKEMRD-- 225 (278)
Q Consensus 164 -~~~VI~~g~g~v~~~~~~~~L~------~~~vV~L~a~~e~l~~R-~~r~----rp~~~~~~~l~~~----~~er~~-- 225 (278)
.+..+.. |++-..+++..+. ..+++|++|+.|++.+| ..|+ |...+ .+.+++. +....|
T Consensus 86 ~~~~fLID--GyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn-~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 86 DSNGFLID--GYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDN-EESIKKRLETYNKSTLPVI 162 (195)
T ss_pred CCCeEEec--CCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCc-hHHHHHHHHHHHHcchHHH
Confidence 1222222 4444445544332 36999999999999999 4333 33322 3334332 222222
Q ss_pred -ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 226 -GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 226 -~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
+|+..+ ++..+| .+.+++++..++...+...
T Consensus 163 ~~~e~kg----------~l~~i~-a~~~~d~Vf~~v~~~id~~ 194 (195)
T KOG3079|consen 163 EYYEKKG----------KLLKIN-AERSVDDVFEEVVTAIDAA 194 (195)
T ss_pred HHHHccC----------cEEEec-CCCCHHHHHHHHHHHhhcc
Confidence 222222 222333 5689999999999888653
No 81
>PRK08118 topology modulation protein; Reviewed
Probab=99.27 E-value=2.2e-11 Score=103.95 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=63.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
+.|+|+|++||||||+|+.|++.+|+++++.|.+++.. |+.... .+.+ ..+++++....++|+. |..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-~w~~~~-------~~~~----~~~~~~~~~~~~wVid-G~~ 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-NWEGVP-------KEEQ----ITVQNELVKEDEWIID-GNY 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-CCcCCC-------HHHH----HHHHHHHhcCCCEEEe-CCc
Confidence 57999999999999999999999999999999987642 211111 1111 1234455555666664 321
Q ss_pred eeechhHHH-hhh-CCcEEEEEcCHHHHHhh
Q 023749 174 AVQSSANLA-LLR-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 174 ~v~~~~~~~-~L~-~~~vV~L~a~~e~l~~R 202 (278)
. ..++ .+. .+.+|||++|.+++..|
T Consensus 69 --~--~~~~~~l~~~d~vi~Ld~p~~~~~~R 95 (167)
T PRK08118 69 --G--GTMDIRLNAADTIIFLDIPRTICLYR 95 (167)
T ss_pred --c--hHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 1 1121 233 78999999999998877
No 82
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.27 E-value=1.4e-10 Score=102.12 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCcee----cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC---
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF----DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR--- 165 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i----D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~--- 165 (278)
.+.|+|.||.|+||||+|+.||+++|.+.+ +-|.+++..+.. +.+ +.-.-+-.|..-..+-.++..+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d--~~~-yaf~~QiyFL~~Rfk~~k~~~~~~~~i~ 80 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYED--PER-YAFLLQIYFLLNRFKKIKKALSDKNNIL 80 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHh--HHH-hhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 578999999999999999999999997653 444555544431 111 0000011221111111222222222
Q ss_pred --EEEEeC---------Cceeechh-------HHH----hh---h--CCcEEEEEcCHHHHHhh-hcCCCCCC-------
Q 023749 166 --LVVCAG---------NGAVQSSA-------NLA----LL---R--HGISLWIDVPPGMVARM-DHSGFPES------- 210 (278)
Q Consensus 166 --~VI~~g---------~g~v~~~~-------~~~----~L---~--~~~vV~L~a~~e~l~~R-~~r~rp~~------- 210 (278)
.|+... .|.+ .+. -++ .+ . ++++|||+|+.+++.+| .+|||+.+
T Consensus 81 drsI~eD~~lf~~~~~~~g~~-~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~ 159 (216)
T COG1428 81 DRSIFEDYFLFAKLNFAKGTL-SPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDEN 159 (216)
T ss_pred CcchhhhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccch
Confidence 122110 0000 011 111 12 1 57999999999999999 88998843
Q ss_pred -ChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 211 -EVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 211 -~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
++.+.+.+.|..+...|. ..++.|+. +..+....++-.+.++..+.+++
T Consensus 160 ~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~---------~~~D~~~~~~d~~~v~~~I~~~~ 210 (216)
T COG1428 160 KDYLKDLHRRYDDWFENYDACPVLGIDG---------DSIDFVNNEQDLEKVLDQILAKL 210 (216)
T ss_pred HHHHHHHHHHHHHHHHhcccCCeeeecc---------ceecccCCHHHHHHHHHHHHHHH
Confidence 234445555555555554 35667763 22343444444455555555444
No 83
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.26 E-value=4.7e-10 Score=96.56 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhchhHhHHHHHHHHHHHHc-CC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MG 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~------~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~-~~ 164 (278)
.|..++|+|++||||||+++.|+..++..+++.|.+... ..| ....+ .....+...+...+...+.. ..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 77 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IPLTD---EDRLPWLERLNDASYSLYKKNET 77 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CCCCc---ccchHHHHHHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999885321 112 11111 00111222222222222121 22
Q ss_pred CEEEEeCCceeechhHHHhhh-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCc-EEEecC
Q 023749 165 RLVVCAGNGAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TAD-VTVSLQ 237 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD-~vId~~ 237 (278)
..|+++ .+....++.++ . -..|||++|++++.+| .+|.... ...+.+..++...++... ..+ +.||
T Consensus 78 g~iv~s----~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-~~~~vl~~Q~~~~e~~~~~e~~~~~~d-- 150 (176)
T PRK09825 78 GFIVCS----SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF-MPPDLLQSQFDALERPCADEHDIARID-- 150 (176)
T ss_pred EEEEEE----ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCC-CCHHHHHHHHHHcCCCCCCcCCeEEEE--
Confidence 233322 12333444444 2 2689999999999999 6554322 234566667665444322 234 3555
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 238 KVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+ ..+++++++.+.+.+.+.+
T Consensus 151 ----------~-~~~~~~~~~~~~~~~~~~~ 170 (176)
T PRK09825 151 ----------V-NHDIENVTEQCRQAVQAFR 170 (176)
T ss_pred ----------C-CCCHHHHHHHHHHHHHHHH
Confidence 3 4578999999999987665
No 84
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.26 E-value=2.7e-11 Score=98.86 Aligned_cols=109 Identities=23% Similarity=0.252 Sum_probs=64.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHH--HHHhhchhHhHHHHHHHHHHHH-cCCCEEEEeC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK--AFRESDEKGYQQAETEVLKQLS-SMGRLVVCAG 171 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~e--i~~~~ge~~fr~~e~~vl~~l~-~~~~~VI~~g 171 (278)
+|+++|+|||||||+++.|++.+++.+++.|.+.....+ ..... ..... ...+.+.-...+.... ...+.|++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~vvd~~ 78 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG-EDPPSPSDYIEA-EERAYQILNAAIRKALRNGNSVVVDNT 78 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC-SSSGCCCCCHHH-HHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc-cccccchhHHHH-HHHHHHHHHHHHHHHHHcCCCceeccC
Confidence 589999999999999999999999999999998887765 21110 00000 1111111112233333 3344455422
Q ss_pred CceeechhHHH----hhh-CC---cEEEEEcCHHHHHhh-hcCCCC
Q 023749 172 NGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM-DHSGFP 208 (278)
Q Consensus 172 ~g~v~~~~~~~----~L~-~~---~vV~L~a~~e~l~~R-~~r~rp 208 (278)
......++ .++ .+ .+|+|++|.+++.+| ..|++.
T Consensus 79 ---~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 79 ---NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp -----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred ---cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 22223332 223 34 689999999999999 555443
No 85
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.25 E-value=5.1e-12 Score=106.99 Aligned_cols=109 Identities=25% Similarity=0.355 Sum_probs=64.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
+|..|||+|.+||||||+|+.|.++| | ..++|.|.+...... .+. +-.+.+.+..+.+ .++...+...+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~--dl~-fs~~dR~e~~rr~-~~~A~ll~~~G~i 76 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA--DLG-FSKEDREENIRRI-AEVAKLLADQGII 76 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT--T---SSHHHHHHHHHHH-HHHHHHHHHTTSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC--CCC-CCHHHHHHHHHHH-HHHHHHHHhCCCe
Confidence 47899999999999999999999988 3 457888887654332 211 1112233344332 1223344445656
Q ss_pred EEEeCCceeechhHHHhh----hC--CcEEEEEcCHHHHHhhhcCC
Q 023749 167 VVCAGNGAVQSSANLALL----RH--GISLWIDVPPGMVARMDHSG 206 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L----~~--~~vV~L~a~~e~l~~R~~r~ 206 (278)
||++. +....+.++.. .. -+.|||+||.+++.+|+.++
T Consensus 77 vIva~--isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~Kg 120 (156)
T PF01583_consen 77 VIVAF--ISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKG 120 (156)
T ss_dssp EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTS
T ss_pred EEEee--ccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchh
Confidence 66542 12223333333 33 36799999999999995444
No 86
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.25 E-value=2.7e-10 Score=97.34 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=26.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceec
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFD 123 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD 123 (278)
+.|+|.|++||||||+++.|++.+ |+.++.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 579999999999999999999998 665543
No 87
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.23 E-value=1.6e-10 Score=99.15 Aligned_cols=107 Identities=15% Similarity=0.148 Sum_probs=64.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHH-HHHc---CCC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS---MGR 165 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~~ 165 (278)
+|+|+|+|||||||+|+.||+++|+++++.|+++++.....+ +.+.+.. |.....++...++. .+.. ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence 489999999999999999999999999999999877543111 1122221 21111222222222 2222 233
Q ss_pred EEEEeCCceeechhHHHhh--------hCCcEEEEEcCHHHHHhh-hcC
Q 023749 166 LVVCAGNGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~L--------~~~~vV~L~a~~e~l~~R-~~r 205 (278)
+|++ | +.........+ ..+++|||++|.+++.+| ..|
T Consensus 80 ~vld-g--~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R 125 (194)
T cd01428 80 FILD-G--FPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGR 125 (194)
T ss_pred EEEe-C--CCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 4543 2 22222222222 146899999999999999 444
No 88
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.23 E-value=9.2e-11 Score=120.67 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=51.3
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
+++-|||+|+++++++| -.+... .+ .+.+.+...+|+. ... -.+.+-..+...-++||+++++||+++.|.+++
T Consensus 155 a~~K~~l~A~~~~Ra~Rr~~~~~~-~~-~~~~~~~~~~Rd~--~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i 229 (712)
T PRK09518 155 AEVRILLTAREEVRQARRSGQDRS-ET-PGVVLEDVAARDE--ADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGLV 229 (712)
T ss_pred CCeEEEEECCHHHHHHHHHHhhhc-CC-HHHHHHHHHHHhh--hcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 46889999999999998 211111 22 2333333344432 112 333444455555667799999999999999999
Q ss_pred hhcCC
Q 023749 265 NASIS 269 (278)
Q Consensus 265 ~~~~~ 269 (278)
+..++
T Consensus 230 ~~~~~ 234 (712)
T PRK09518 230 EDAIE 234 (712)
T ss_pred Hhhhh
Confidence 88776
No 89
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=1.6e-10 Score=101.20 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=87.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhchhHh----------------------H
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEKGY----------------------Q 150 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~-i~ei~~~~ge~~f----------------------r 150 (278)
.|.|+|++||||||+++.|++ +|++++|.|.+.++.+.. .. ..++...+|...+ .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 478999999999999999976 799999999998776531 11 1223333332221 0
Q ss_pred HHHH--------HHHHHHH--cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHH
Q 023749 151 QAET--------EVLKQLS--SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFA 218 (278)
Q Consensus 151 ~~e~--------~vl~~l~--~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~ 218 (278)
.+|. ++.+.+. .....|+... ..+.+.++.. ..+.+||+++|++++.+| ..| +...++....+..
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~--pLL~E~~~~~-~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~ 156 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV--PLLFETDAYT-LCDATVTVDSDPEESILRTISRDGMKKEDVLARIAS 156 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe--eeeeEcCchh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1110 0000111 1122233211 1222333221 158999999999999999 444 4443333333333
Q ss_pred HHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 219 ~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
++.. ...-+.||++|+| +.+.+++..++.+++..
T Consensus 157 Q~~~-~~k~~~aD~vI~N-------------~~~~~~l~~~v~~l~~~ 190 (196)
T PRK14732 157 QLPI-TEKLKRADYIVRN-------------DGNREGLKEECKILYST 190 (196)
T ss_pred cCCH-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence 3211 1111269999985 45899999888877754
No 90
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.22 E-value=9.8e-11 Score=103.09 Aligned_cols=161 Identities=17% Similarity=0.148 Sum_probs=89.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhc----------------hhHhHHH-H
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESD----------------EKGYQQA-E 153 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~g----------------e~~fr~~-e 153 (278)
.+.|.|+|++||||||+++.+++ +|++++|+|.+.++.+.. .....+...+| +..|.+. +
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 46899999999999999999998 999999999998865421 11112222222 1222211 1
Q ss_pred HHHHHHHHc----CCC-EEEE-eCCce-eec-hhHHHh-h-h-CCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHH
Q 023749 154 TEVLKQLSS----MGR-LVVC-AGNGA-VQS-SANLAL-L-R-HGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALY 220 (278)
Q Consensus 154 ~~vl~~l~~----~~~-~VI~-~g~g~-v~~-~~~~~~-L-~-~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~ 220 (278)
...|+.+.. ..- .++. ...++ +.. |--.+. . . .+.+|+++||++++.+| .+|+ ...++....+..+.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~ 160 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQR 160 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence 112222210 000 0000 00001 111 111111 1 1 35799999999999999 5555 22222333344443
Q ss_pred HHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 221 KEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 221 ~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
..++. +..||.+++| +.++++..+++.+.+....
T Consensus 161 ~~~ek-~~~ad~vi~n-------------~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 161 DLEEK-LALADVVIDN-------------DGSIENLLEQIEKLLKELL 194 (201)
T ss_pred CHHHH-HhhcCChhhc-------------CCCHHHHHHHHHHHHHHHH
Confidence 33332 5579999985 5788888888888776554
No 91
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.22 E-value=2.5e-10 Score=105.01 Aligned_cols=131 Identities=15% Similarity=0.118 Sum_probs=74.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCChHH-HHHhhchhHhHHHHHHHHHHHHc-CCCEEEE
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK-AFRESDEKGYQQAETEVLKQLSS-MGRLVVC 169 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~i~e-i~~~~ge~~fr~~e~~vl~~l~~-~~~~VI~ 169 (278)
+++|+++|+|||||||+|+.|++.+ ++.+++.|.+.+...+...... .+...++..........+..... ....|++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid 81 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS 81 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 5689999999999999999999999 9999999998776554111000 11111222233333333333333 3444554
Q ss_pred eCCceeechhHHHh-hh-CC---cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh
Q 023749 170 AGNGAVQSSANLAL-LR-HG---ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR 224 (278)
Q Consensus 170 ~g~g~v~~~~~~~~-L~-~~---~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~ 224 (278)
...........+.. ++ .+ .+|||++|.+++.+| ..|+... ...+.+.+++...+
T Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-~~~~~i~~~~~~~~ 141 (300)
T PHA02530 82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA-VPEDVLRSMFKQMK 141 (300)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC-CCHHHHHHHHHHHH
Confidence 32211111112222 22 22 379999999999999 6664322 12345555544433
No 92
>PRK06547 hypothetical protein; Provisional
Probab=99.21 E-value=4e-11 Score=103.01 Aligned_cols=113 Identities=22% Similarity=0.259 Sum_probs=68.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHH--HHHHHHH--HH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQA--ETEVLKQ--LS 161 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~--e~~vl~~--l~ 161 (278)
-..+.|.|.|++||||||+|+.|++.+++++++.|+++....+ .. +.+.+...|+..+... ....... ..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l 91 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSV 91 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEe
Confidence 3456788889999999999999999999999999998754322 21 1122222222211110 0000000 01
Q ss_pred cCCCEEEEeCCceeechhHHHhhh-CC--cEEEEEcCHHHHHhh-hcC
Q 023749 162 SMGRLVVCAGNGAVQSSANLALLR-HG--ISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 162 ~~~~~VI~~g~g~v~~~~~~~~L~-~~--~vV~L~a~~e~l~~R-~~r 205 (278)
...+.||..|.+.. .+..++.+. .+ +.|||++|.+++.+| ..|
T Consensus 92 ~~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 92 EPGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CCCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 12345666666554 344554443 33 789999999999999 544
No 93
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.21 E-value=7.5e-11 Score=101.34 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=34.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG 133 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g 133 (278)
.|.|+|++||||||+++.|++ +|++++|+|.+.++.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 38 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence 489999999999999999998 99999999999887653
No 94
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.3e-12 Score=126.21 Aligned_cols=78 Identities=26% Similarity=0.178 Sum_probs=72.1
Q ss_pred cccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhh------hccCCcEEEEEccCCCc
Q 023749 47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIS------TELKGTSVFLVGMNNAI 105 (278)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~~GSG 105 (278)
+.+|+++.++|||.||..++||++.+ .||.+ ..+|+|+.|++ +.++|+.++|+||||+|
T Consensus 283 ~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVG 362 (782)
T COG0466 283 SPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVG 362 (782)
T ss_pred CCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCC
Confidence 67889999999999999999998887 77877 79999999988 78899999999999999
Q ss_pred HHHHHHHHHHHhCCceecC
Q 023749 106 KTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 106 KSTlAk~LAe~Lg~~~iD~ 124 (278)
||++|+.+|+.+|..|+..
T Consensus 363 KTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 363 KTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred chhHHHHHHHHhCCCEEEE
Confidence 9999999999999998753
No 95
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.20 E-value=4.1e-11 Score=103.77 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=76.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhchhHh----------------H-----
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEKGY----------------Q----- 150 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~-i~ei~~~~ge~~f----------------r----- 150 (278)
+.|.|+|.+||||||+++.|++ +|++++|+|.+.++.+.. .. ...+...+|.+.+ .
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4789999999999999999988 999999999998887641 11 1223333332221 1
Q ss_pred -HHHH--------HHHHHHHc--CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHH
Q 023749 151 -QAET--------EVLKQLSS--MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLF 217 (278)
Q Consensus 151 -~~e~--------~vl~~l~~--~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~ 217 (278)
.++. ++.+.+.. ....++... ..+.+.++.. ..+.+|++.||.+++.+| ++++.+.++....+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~--pLL~E~~~~~-~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~ 156 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI--PLLFESGLEK-LCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIA 156 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE---TTTTTTTGGG-GSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc--chhhhhhHhh-hhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 1111 01111111 113333321 1222333211 168999999999999999 555666544444555
Q ss_pred HHHHHhhhccccCcEEEecC
Q 023749 218 ALYKEMRDGYATADVTVSLQ 237 (278)
Q Consensus 218 ~~~~er~~~Y~~AD~vId~~ 237 (278)
.|+.... ..+.||++|+|+
T Consensus 157 ~Q~~~~~-k~~~ad~vI~N~ 175 (180)
T PF01121_consen 157 SQMPDEE-KRKRADFVIDNN 175 (180)
T ss_dssp TS--HHH-HHHH-SEEEE-S
T ss_pred hCCCHHH-HHHhCCEEEECC
Confidence 4443322 123699999974
No 96
>PRK13973 thymidylate kinase; Provisional
Probab=99.16 E-value=1.9e-09 Score=95.24 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=85.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCceecC--------chHHHHHhCCC---Ch---HH--HHHhhchhHhHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS--------DSLVFEAAGGE---SA---AK--AFRESDEKGYQQA 152 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~--------D~li~~~~g~~---~i---~e--i~~~~ge~~fr~~ 152 (278)
+|+.|+|.|+.||||||+++.|++.| |++++.+ ...+++..... .. .+ +|.. ..+...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a---~r~~~~ 78 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA---ARDDHV 78 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH---HHHHHH
Confidence 58899999999999999999999999 8887654 33333322100 00 00 1110 111111
Q ss_pred HHHHHHHHHcCCCEEEEeCC--------cee--echhHHHhh--------hCCcEEEEEcCHHHHHhh-hcCCCC-----
Q 023749 153 ETEVLKQLSSMGRLVVCAGN--------GAV--QSSANLALL--------RHGISLWIDVPPGMVARM-DHSGFP----- 208 (278)
Q Consensus 153 e~~vl~~l~~~~~~VI~~g~--------g~v--~~~~~~~~L--------~~~~vV~L~a~~e~l~~R-~~r~rp----- 208 (278)
+..+...+ ..+..||+... ++. ........+ +++++|||++|++++.+| ..|+..
T Consensus 79 ~~~i~~~l-~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~ 157 (213)
T PRK13973 79 EEVIRPAL-ARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDR 157 (213)
T ss_pred HHHHHHHH-HCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCc
Confidence 22222223 34556665431 000 011111111 268999999999999999 544321
Q ss_pred -CCChHHHHH---HHHHHhhhccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 209 -ESEVLPQLF---ALYKEMRDGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 209 -~~~~~~~l~---~~~~er~~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
..+..+.+. ..|.+....|. .. .+|| ...++|++.++|..++.+.+
T Consensus 158 ~e~~~~~~~~~~~~~y~~l~~~~~-~~~~~Id-------------a~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 158 FEKEDLAFHEKRREAFLQIAAQEP-ERCVVID-------------ATASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred hhhchHHHHHHHHHHHHHHHHhCC-CcEEEEc-------------CCCCHHHHHHHHHHHHHHHH
Confidence 111112222 22322221111 01 3454 46799999999999987654
No 97
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.15 E-value=1.7e-10 Score=108.92 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=69.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCc------eecCchHH-----HHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749 96 VFLVGMNNAIKTHLGKFLADALRYY------YFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg~~------~iD~D~li-----~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~ 164 (278)
++|+|+|||||||+++.|++.|+.. +++.|+++ +...| ++++++|+ .||+. +.++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~k-----~~R~~----i~~~le-- 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQWK-----QFRQE----LLKYLE-- 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHHH-----HHHHH----HHHHHH--
Confidence 6899999999999999999887633 89999998 55555 77787774 35532 223222
Q ss_pred CEEEEeCCceeec----------hhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749 165 RLVVCAGNGAVQS----------SANLALLR-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 165 ~~VI~~g~g~v~~----------~~~~~~L~-~~~vV~L~a~~e~l~~R 202 (278)
+.|+++|+|+.+. ++++..|+ +|++|||+++.+....|
T Consensus 70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~r 118 (340)
T TIGR03575 70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHS 118 (340)
T ss_pred HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHH
Confidence 2355667777653 34456666 89999999999999988
No 98
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.15 E-value=4.2e-10 Score=97.00 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=79.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCce--ecCchHHHHHhCCCCh-HHHHHh--h---chhHhHHHH---HHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESA-AKAFRE--S---DEKGYQQAE---TEVLKQLS 161 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD~D~li~~~~g~~~i-~ei~~~--~---ge~~fr~~e---~~vl~~l~ 161 (278)
|++|+|.|+|.|||||+|+.|.+.+.-+| +..|.++..+..+... ...+.. . +...++... ...++.++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998664 5668777642210000 000000 0 012222222 22345555
Q ss_pred cCCCEEEEeCCceeechh----HH-Hhhh-CC-cEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHHHHHhhhccc--cC
Q 023749 162 SMGRLVVCAGNGAVQSSA----NL-ALLR-HG-ISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYA--TA 230 (278)
Q Consensus 162 ~~~~~VI~~g~g~v~~~~----~~-~~L~-~~-~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~~~er~~~Y~--~A 230 (278)
..+..||.. .++..+. .+ +.|. .. +.|-+.||.+++.+| ..| .|+.. . -+.+++ ..++ ..
T Consensus 81 ~aG~~VIvD--~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G--~--a~~q~~---~Vh~~~~Y 151 (174)
T PF07931_consen 81 RAGNNVIVD--DVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG--L--AAWQAE---HVHEGGRY 151 (174)
T ss_dssp HTT-EEEEE--E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT--H--HHHHTT---GGGTT---
T ss_pred hCCCCEEEe--cCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH--H--HHHHHh---hcccCCCC
Confidence 556666643 2233222 12 3343 22 678899999999999 333 34432 1 112222 1233 46
Q ss_pred cEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
|+.|| |+..||+|+|++|++.+
T Consensus 152 DleVD------------Ts~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 152 DLEVD------------TSATSPEECAREILARL 173 (174)
T ss_dssp SEEEE------------TTSS-HHHHHHHHHTT-
T ss_pred CEEEE------------CCCCCHHHHHHHHHHHh
Confidence 88887 89999999999998765
No 99
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.14 E-value=1.2e-09 Score=94.35 Aligned_cols=159 Identities=15% Similarity=0.123 Sum_probs=83.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHH-HHcC--CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQ-LSSM--GR 165 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~-l~~~--~~ 165 (278)
++|+|+|+|||||||+|+.||++++++++|++++++......+ +..+.. .|+-.-.+.-..++.. +... ..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~-~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYID-KGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHH-cCCccchHHHHHHHHHHHHhhcccC
Confidence 5799999999999999999999999999999998876443111 111111 1221111111122222 2111 11
Q ss_pred EEEEeCCce-eechhHHH-hhh-----CCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhccc-cCcEEEe
Q 023749 166 LVVCAGNGA-VQSSANLA-LLR-----HGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYA-TADVTVS 235 (278)
Q Consensus 166 ~VI~~g~g~-v~~~~~~~-~L~-----~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~-~AD~vId 235 (278)
.+|-.|-+- +.-...++ .|. .+.++.++++.+.+..| ..|. |+.+. .+.+.+. ...|. ....+++
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~-~~~~~~R----~~~y~~~~~pli~ 154 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDN-EETVKKR----LKVYHEQTAPLIE 154 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCC-HHHHHHH----HHHHHhcccchhh
Confidence 233333211 11011111 111 36799999999999999 4332 44332 2333332 22222 2222222
Q ss_pred cCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 236 LQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 236 ~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
... .-+| +..+++++.+.+.+.+
T Consensus 155 ~y~-----~~id-~~~~i~~v~~~i~~~l 177 (178)
T COG0563 155 YYS-----VTID-GSGEIEEVLADILKAL 177 (178)
T ss_pred hhe-----eecc-CCCCHHHHHHHHHHhh
Confidence 110 0112 5689999999988765
No 100
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.14 E-value=1.3e-09 Score=94.36 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|+.|+|.|++||||||+++.|++.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999987
No 101
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.14 E-value=4.3e-10 Score=103.30 Aligned_cols=141 Identities=20% Similarity=0.245 Sum_probs=82.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHH-cCCC--EEEEe
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGR--LVVCA 170 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-~~~~--~VI~~ 170 (278)
..|+|+|++||||||..+.| |.+||.++|+ +-.. ++.. |.+. +.+-. .... .+|+.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN--lP~~---------Ll~~-----l~~~----~~~~~~~~~~~Ai~iD~ 60 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN--LPPS---------LLPQ-----LIEL----LAQSNSKIEKVAIVIDI 60 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC--CcHH---------HHHH-----HHHH----HHhcCCCCceEEEEEeC
Confidence 46889999999999999999 6699999885 2211 2211 1100 00000 0111 22332
Q ss_pred CCceeec--hhHHHhhh-CC---cEEEEEcCHHHHHhh--h-cCCCCCCChHHHHHHHHHHhhh---ccccCcEEEecCc
Q 023749 171 GNGAVQS--SANLALLR-HG---ISLWIDVPPGMVARM--D-HSGFPESEVLPQLFALYKEMRD---GYATADVTVSLQK 238 (278)
Q Consensus 171 g~g~v~~--~~~~~~L~-~~---~vV~L~a~~e~l~~R--~-~r~rp~~~~~~~l~~~~~er~~---~Y~~AD~vId~~~ 238 (278)
.++.... ......++ .+ .+|||+|+.+++.+| + +|..|.......++.+-.||+- ..+.||++||
T Consensus 61 R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vID--- 137 (284)
T PF03668_consen 61 RSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVID--- 137 (284)
T ss_pred CChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEE---
Confidence 2211110 11222232 22 589999999999999 3 4455532211122333344443 3337999998
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
|+++++.|+.+.|.+.+...
T Consensus 138 ---------Ts~l~~~~Lr~~i~~~~~~~ 157 (284)
T PF03668_consen 138 ---------TSNLSVHQLRERIRERFGGD 157 (284)
T ss_pred ---------CCCCCHHHHHHHHHHHhccC
Confidence 89999999999999988743
No 102
>PLN02924 thymidylate kinase
Probab=99.10 E-value=2.3e-09 Score=95.55 Aligned_cols=171 Identities=14% Similarity=0.142 Sum_probs=87.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH----HhCCCChHHHHHhh------ch-hHhHH--HH-HHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE----AAGGESAAKAFRES------DE-KGYQQ--AE-TEV 156 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~----~~g~~~i~ei~~~~------ge-~~fr~--~e-~~v 156 (278)
-+|+.|+|.|..||||||+++.|++.|+...+......+. ..| ..+.+++... .+ -.|.. .+ ...
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g-~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~ 92 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVG-QMISAYLSNKSQLDDRAIHLLFSANRWEKRSL 92 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999996443321110000 000 0111111100 00 00111 01 011
Q ss_pred HHHHHcCCCEEEEeCCce---e------echhHHHh----h-hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHH
Q 023749 157 LKQLSSMGRLVVCAGNGA---V------QSSANLAL----L-RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYK 221 (278)
Q Consensus 157 l~~l~~~~~~VI~~g~g~---v------~~~~~~~~----L-~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~ 221 (278)
+......+..||+...-. + ...+.... + +++++|||++|+++..+| ..++...+ ..+.+.+..+
T Consensus 93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E-~~~~~~rv~~ 171 (220)
T PLN02924 93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYE-KLEFQKKVAK 171 (220)
T ss_pred HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccc-cHHHHHHHHH
Confidence 223333455666543110 0 00011111 1 268999999999999999 32211111 1233333222
Q ss_pred HhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC-----CCccccc
Q 023749 222 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS-----DPTSRLL 276 (278)
Q Consensus 222 er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~-----~~~~~~~ 276 (278)
.........-.+|| ...++|++.++|.+.+...++ +|.|||.
T Consensus 172 ~Y~~la~~~~~vID-------------a~~sieeV~~~I~~~I~~~l~~~~~~~~~~~~~ 218 (220)
T PLN02924 172 RFQTLRDSSWKIID-------------ASQSIEEVEKKIREVVLDTVQRCLAGKPLSRLW 218 (220)
T ss_pred HHHHHhhcCEEEEC-------------CCCCHHHHHHHHHHHHHHHHHhccccCcHHHhc
Confidence 21111111112344 358999999999998877553 8888875
No 103
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.08 E-value=1.5e-09 Score=95.10 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF 129 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li~ 129 (278)
++..|.|+|++||||||+++.|++.++ +.+++.|.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 567899999999999999999999983 45678887653
No 104
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.06 E-value=2e-09 Score=112.32 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~ 131 (278)
.+..|.|.|++||||||+|+.||++||+.|+|++.+++..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 4568999999999999999999999999999999988764
No 105
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.06 E-value=4.7e-09 Score=90.43 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+|+.|+|.|++||||||+++.|++.++.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999853
No 106
>PLN02842 nucleotide kinase
Probab=99.04 E-value=4.4e-09 Score=103.72 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=60.6
Q ss_pred EEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhchhHhHHHHHHHHHHHHc-----CCCE
Q 023749 97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSS-----MGRL 166 (278)
Q Consensus 97 ~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~-----~~~~ 166 (278)
+|+|+|||||||+|+.|++++|+.++++++++..... + ..+.+++. .|+....+.-..++.+... ...+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcE
Confidence 4789999999999999999999999999998865421 1 12333332 1221111111112222111 1234
Q ss_pred EEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh
Q 023749 167 VVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R 202 (278)
|+ .| +.......+.|. .+++|+|++|.+++.+|
T Consensus 80 IL-DG--fPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleR 117 (505)
T PLN02842 80 LL-DG--YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDR 117 (505)
T ss_pred EE-eC--CCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence 44 22 322222222332 57899999999999998
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.04 E-value=2.3e-10 Score=91.05 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li 128 (278)
+|+|+|+|||||||+|+.||+.+|+++++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999954
No 108
>PRK07261 topology modulation protein; Provisional
Probab=99.03 E-value=8.9e-10 Score=94.25 Aligned_cols=94 Identities=12% Similarity=0.142 Sum_probs=60.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
++|+|+|++||||||+|+.|++.+|+++++.|.+.+.. ++. ....+.+.. .+..+...+.+|++ |.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~~~-------~~~~~~~~~----~~~~~~~~~~wIid-g~- 66 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-NWQ-------ERDDDDMIA----DISNFLLKHDWIID-GN- 66 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-ccc-------cCCHHHHHH----HHHHHHhCCCEEEc-Cc-
Confidence 57999999999999999999999999999999876431 101 111111211 12233344556664 32
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R 202 (278)
.........+. .+.+|||++|.+++..|
T Consensus 67 -~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R 95 (171)
T PRK07261 67 -YSWCLYEERMQEADQIIFLNFSRFNCLYR 95 (171)
T ss_pred -chhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence 22111112233 78999999999999887
No 109
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.02 E-value=1.4e-09 Score=91.44 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=92.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
-+|..||++|.+||||||+|-.|++.|- ...+|.|.+..-... ++. +-.+++.+..|.+- ++.+-++ . .
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~-F~a~dR~ENIRRig-eVaKLFA-D-a 102 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLG-FKAEDRNENIRRIG-EVAKLFA-D-A 102 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccC-cchhhhhhhHHHHH-HHHHHHh-c-c
Confidence 4799999999999999999999999883 346788887654322 211 11223344454432 2222233 2 2
Q ss_pred EEEEeCCce-ee---chhHHHhhh-CC-cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---cCcEEEec
Q 023749 166 LVVCAGNGA-VQ---SSANLALLR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSL 236 (278)
Q Consensus 166 ~VI~~g~g~-v~---~~~~~~~L~-~~-~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~AD~vId~ 236 (278)
+||+...-+ +. +...+++++ .+ +-||+++|.+++.+|+-++.........++. |.-....|+ ++.+++..
T Consensus 103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKg-FTGIddPYEaP~~cEi~l~~ 181 (207)
T KOG0635|consen 103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKG-FTGIDDPYEAPLNCEIVLKS 181 (207)
T ss_pred ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccc-cccCCCcccCCCCcEEEEcc
Confidence 345432111 11 122344555 34 5699999999999994333221000001211 223344565 46777753
Q ss_pred CcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
.+..+|+++++.|.+++..+
T Consensus 182 -----------~~~~sp~~mae~iv~YL~~k 201 (207)
T KOG0635|consen 182 -----------HESSSPEEMAEIIVSYLDNK 201 (207)
T ss_pred -----------CCCCCHHHHHHHHHHHHhhc
Confidence 46778999999999998743
No 110
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.01 E-value=4.3e-09 Score=91.34 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF 129 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~ 129 (278)
.|.|+|++||||||+++.|+..+ +..+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 47899999999999999999987 366788888664
No 111
>PRK06696 uridine kinase; Validated
Probab=99.01 E-value=4.7e-09 Score=93.22 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCcee--cCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i--D~D~li 128 (278)
.+.+|.|.|++||||||+|+.|++.| |.+++ ++|+++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 46688999999999999999999999 65554 478775
No 112
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.01 E-value=2.6e-08 Score=84.98 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=96.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCC---hHHHHHhhchhHhHHHHHHHHHHHHcCCC-EE
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGES---AAKAFRESDEKGYQQAETEVLKQLSSMGR-LV 167 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~---i~ei~~~~ge~~fr~~e~~vl~~l~~~~~-~V 167 (278)
.+.++++|.||+||||+.+.+.+.+ +..+++..+++-+...... ..+-......+..+++...+.+++..+.. .|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~ii 83 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEII 83 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence 3789999999999999999999999 7777887777654432111 11222222233444454455555555443 45
Q ss_pred EEeC------Cceee-chh-HHHhhhCCcEEEEEcCHHHHHhh---h-cCCCCCCChHHHHHHHH-HHhhhcc--c---c
Q 023749 168 VCAG------NGAVQ-SSA-NLALLRHGISLWIDVPPGMVARM---D-HSGFPESEVLPQLFALY-KEMRDGY--A---T 229 (278)
Q Consensus 168 I~~g------~g~v~-~~~-~~~~L~~~~vV~L~a~~e~l~~R---~-~r~rp~~~~~~~l~~~~-~er~~~Y--~---~ 229 (278)
+++. .|.+. .|. -++.+.++.+|.|.++++.+..| + +|.|+.+. .+.+..+. ..|...| . .
T Consensus 84 vDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es-~e~i~eHqe~nR~aA~a~A~~~g 162 (189)
T COG2019 84 VDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVES-VEEIREHQEMNRAAAMAYAILLG 162 (189)
T ss_pred EeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhccccccccccc-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 5442 23222 122 23455688999999999998877 2 34455433 34444321 1222222 2 2
Q ss_pred CcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 230 ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 230 AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|.+ +|.| .+..||+.+.+|...+..
T Consensus 163 atVkIV~n------------~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 163 ATVKIVEN------------HEGDPEEAAEEIVELLDR 188 (189)
T ss_pred CeEEEEeC------------CCCCHHHHHHHHHHHHhc
Confidence 555 4443 367999999999988763
No 113
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.99 E-value=1.6e-10 Score=117.99 Aligned_cols=143 Identities=15% Similarity=0.253 Sum_probs=91.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhchhHhHHHHHHHHHHHHc-CCCEEEE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVC 169 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~-ei~~~~ge~~fr~~e~~vl~~l~~-~~~~VI~ 169 (278)
....|+++|+||+||||+|+.|++.|+|.+++++.+....++ ..+. +.+...++..|+..|.++...++. ..+.++.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~ 292 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICK 292 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455788999999999999999999999999998888765554 3332 234444566677777776666553 2345566
Q ss_pred eCCceeechhHHH---------hhh-CC-----cEEEEEc--CHHHHHhh-hcCC---CCC--CChHHHHHHHHHHhhhc
Q 023749 170 AGNGAVQSSANLA---------LLR-HG-----ISLWIDV--PPGMVARM-DHSG---FPE--SEVLPQLFALYKEMRDG 226 (278)
Q Consensus 170 ~g~g~v~~~~~~~---------~L~-~~-----~vV~L~a--~~e~l~~R-~~r~---rp~--~~~~~~l~~~~~er~~~ 226 (278)
+|+++|++..|.. .++ .+ .+|||++ +...+.+| ..|+ .|. ++..+.+.+.+++|.+.
T Consensus 293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~ 372 (664)
T PTZ00322 293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAV 372 (664)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 6666676653321 222 22 4788776 33444444 2221 111 22346677788899999
Q ss_pred cccCcEEEe
Q 023749 227 YATADVTVS 235 (278)
Q Consensus 227 Y~~AD~vId 235 (278)
|+.++..++
T Consensus 373 Ye~~~~~~d 381 (664)
T PTZ00322 373 YKSLNPVTD 381 (664)
T ss_pred cccCCcccc
Confidence 987776554
No 114
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.95 E-value=3.6e-08 Score=87.47 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=42.0
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCC-----CChHHHHHHHHHHhh-hccc-cCcE-EEecCcccccccccCCCCCCHHHH
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFPE-----SEVLPQLFALYKEMR-DGYA-TADV-TVSLQKVASQLGYDDLDAVTTEDM 256 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp~-----~~~~~~l~~~~~er~-~~Y~-~AD~-vId~~~va~~~~~~Dts~~tpeev 256 (278)
++++|||++|++++.+| .+|+++. .+.++.+...|+++. +.|. .+++ +||. +...++|++
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-----------~~~~~~e~i 211 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-----------TEAGDTEKV 211 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-----------CChhhHHHH
Confidence 58999999999999999 6677652 123345666676663 2344 3455 4442 123677777
Q ss_pred HHHHHH
Q 023749 257 TLEVKW 262 (278)
Q Consensus 257 a~~I~~ 262 (278)
+++|..
T Consensus 212 ~~~I~~ 217 (219)
T cd02030 212 VEDIEY 217 (219)
T ss_pred HHHHHc
Confidence 777643
No 115
>PRK13976 thymidylate kinase; Provisional
Probab=98.94 E-value=7.4e-08 Score=85.26 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCC--CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCC-CCC---HHHHHH
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFPE--SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLD-AVT---TEDMTL 258 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp~--~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts-~~t---peeva~ 258 (278)
++++|||++|+++..+| .+++... .+..+.+.+.|.+....+...-.+|+. ++ ..+ +|++.+
T Consensus 125 PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~-----------~~~~~~~~~~e~v~~ 193 (209)
T PRK13976 125 PDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVRKGFREIVIKNPHRCHVITC-----------IDAKDNIEDINSVHL 193 (209)
T ss_pred CCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHHHHHHHHHHhCCCCeEEEEC-----------CCCccCcCCHHHHHH
Confidence 68999999999999999 4433221 122334444454443322222335552 11 234 999999
Q ss_pred HHHHHhhhcCCCC
Q 023749 259 EVKWLYNASISDP 271 (278)
Q Consensus 259 ~I~~~i~~~~~~~ 271 (278)
+|.+.+.+.++|+
T Consensus 194 ~i~~~i~~~~~~~ 206 (209)
T PRK13976 194 EIVKLLHAVTKDK 206 (209)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887664
No 116
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.94 E-value=7.4e-09 Score=93.67 Aligned_cols=142 Identities=18% Similarity=0.221 Sum_probs=85.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHc-CC--CEEEEe
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MG--RLVVCA 170 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~-~~--~~VI~~ 170 (278)
..|+++|++|||||+..+.| |.+||.++|+ +- ++++.. |.++ +..... .. -.+++.
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN--LP---------p~Llp~-----~~~~----~~~~~~~~~kvAv~iDi 60 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN--LP---------PQLLPK-----LADL----MLTLESRITKVAVVIDV 60 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeecC--CC---------HHHHHH-----HHHH----HhhcccCCceEEEEEec
Confidence 46889999999999999999 6699988874 22 122221 1110 000000 01 123333
Q ss_pred CCceeec--hhHHHhhh-C----CcEEEEEcCHHHHHhh--h-cCCCCCCChHHHHHHHHHHhhhc---cccCcEEEecC
Q 023749 171 GNGAVQS--SANLALLR-H----GISLWIDVPPGMVARM--D-HSGFPESEVLPQLFALYKEMRDG---YATADVTVSLQ 237 (278)
Q Consensus 171 g~g~v~~--~~~~~~L~-~----~~vV~L~a~~e~l~~R--~-~r~rp~~~~~~~l~~~~~er~~~---Y~~AD~vId~~ 237 (278)
.+..... ...+..++ . --++||+|+.+++.+| + +|..|.......+..+-.||+-+ ...||++||
T Consensus 61 Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vID-- 138 (286)
T COG1660 61 RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVID-- 138 (286)
T ss_pred ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEee--
Confidence 3221111 12223444 3 2489999999999999 3 45556332111344444555443 336999998
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 238 KVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
|+.+++.|+.+.|..++....
T Consensus 139 ----------Ts~ls~~~Lr~~i~~~f~~~~ 159 (286)
T COG1660 139 ----------TSELSVHELRERIRTRFLGKE 159 (286)
T ss_pred ----------cccCCHHHHHHHHHHHHccCC
Confidence 899999999999999998643
No 117
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.93 E-value=1.1e-08 Score=89.47 Aligned_cols=152 Identities=17% Similarity=0.132 Sum_probs=88.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhchh----------------HhH------
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEK----------------GYQ------ 150 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~-i~ei~~~~ge~----------------~fr------ 150 (278)
.|.|+|..||||||+++.+- ++|++.+|+|.+.++.... .+ ...+.+.+|.+ .|.
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~ 81 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ 81 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence 57899999999999999995 8999999999998876531 11 11122222221 121
Q ss_pred ------------HHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCCCCChHHH
Q 023749 151 ------------QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPESEVLPQ 215 (278)
Q Consensus 151 ------------~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~ 215 (278)
++-.++++.++.....|+-.- .++.+..+ ++ ...+|.+.||.++..+| .+.+...++....
T Consensus 82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi--PLLFE~~~--~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R 157 (225)
T KOG3220|consen 82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI--PLLFEAKL--LKICHKTVVVTCDEELQLERLVERDELSEEDAENR 157 (225)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec--hHHHHHhH--HhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence 111122223334444333211 12223322 23 45678888999999999 3334444444455
Q ss_pred HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 216 l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
+.+++.- +...+.||++||| +-++++..+++...+.
T Consensus 158 l~sQmp~-~~k~~~a~~Vi~N-------------ng~~~~l~~qv~~v~~ 193 (225)
T KOG3220|consen 158 LQSQMPL-EKKCELADVVIDN-------------NGSLEDLYEQVEKVLA 193 (225)
T ss_pred HHhcCCH-HHHHHhhheeecC-------------CCChHHHHHHHHHHHH
Confidence 5555422 1112369999995 5688888888776664
No 118
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=1.8e-08 Score=88.81 Aligned_cols=137 Identities=17% Similarity=0.182 Sum_probs=67.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceecCch-HHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS-LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~-li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
+.|+|+|+|||||||+|+.||+.| ++..++... ...-.....+.+ +..+.-.+.|.+...+++..... .-.||+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslp-i~ke~yres~~ks~~rlldSalk-n~~VIv 79 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLP-ILKEVYRESFLKSVERLLDSALK-NYLVIV 79 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccc-hHHHHHHHHHHHHHHHHHHHHhc-ceEEEE
Confidence 579999999999999999999988 344444322 110000001111 11111112222211122222222 234554
Q ss_pred eCCceeechhHHHh----hh---CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh---hccc--cCcEEEe
Q 023749 170 AGNGAVQSSANLAL----LR---HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR---DGYA--TADVTVS 235 (278)
Q Consensus 170 ~g~g~v~~~~~~~~----L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~---~~Y~--~AD~vId 235 (278)
..-. ....-.+++ .. .-.+||+.+|+|++.+| ..|+-|.. .+.++++|.+.+ +.+. .+-++|+
T Consensus 80 DdtN-YyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip--~Evl~qly~RfEePn~~~rWDspll~id 155 (261)
T COG4088 80 DDTN-YYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIP--EEVLRQLYDRFEEPNPDRRWDSPLLVID 155 (261)
T ss_pred eccc-HHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCC--HHHHHHHHHhhcCCCCCccccCceEEEe
Confidence 3211 111111111 11 23699999999999999 45555532 234555554433 3333 4667887
No 119
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.90 E-value=1.2e-08 Score=84.94 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHH-HHHc---CCCEEE
Q 023749 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS---MGRLVV 168 (278)
Q Consensus 98 L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~~~VI 168 (278)
|+|+|||||||+|+.||+++|+.+++.++++++.....+ +.+.+. .|+..-.++-..++. .+.. ...+|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhcccceeee
Confidence 689999999999999999999999999999887543111 122221 132222222222222 2222 233344
Q ss_pred EeCCceeechhHHHhh-------h--CCcEEEEEcCHHHHHhh
Q 023749 169 CAGNGAVQSSANLALL-------R--HGISLWIDVPPGMVARM 202 (278)
Q Consensus 169 ~~g~g~v~~~~~~~~L-------~--~~~vV~L~a~~e~l~~R 202 (278)
+ |++.+......+ . .+.+|+|++|.+++.+|
T Consensus 80 d---GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R 119 (151)
T PF00406_consen 80 D---GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIER 119 (151)
T ss_dssp E---SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHH
T ss_pred e---eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhh
Confidence 2 333333222211 1 46899999999999999
No 120
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.88 E-value=3.6e-09 Score=88.47 Aligned_cols=105 Identities=20% Similarity=0.304 Sum_probs=59.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
.|+|+|.|||||||+++.|++.+ |+ .+++.|.+.....+... +......+.++.+.. ....+...+..||.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~---~~~~~~~~~~~~~~~-~a~~l~~~G~~VIi 76 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLG---FSREDREENIRRIAE-VAKLLADAGLIVIA 76 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccC---CCcchHHHHHHHHHH-HHHHHHhCCCEEEE
Confidence 47899999999999999999998 54 45777776654332111 001112233333221 22334344444544
Q ss_pred eCCceeechhHHHhhh------CCcEEEEEcCHHHHHhhhcC
Q 023749 170 AGNGAVQSSANLALLR------HGISLWIDVPPGMVARMDHS 205 (278)
Q Consensus 170 ~g~g~v~~~~~~~~L~------~~~vV~L~a~~e~l~~R~~r 205 (278)
... . .....+..++ .-.+|||++|.+++.+|+.+
T Consensus 77 d~~-~-~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 77 AFI-S-PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred ccC-C-CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 322 1 1222232222 12579999999999999433
No 121
>COG0645 Predicted kinase [General function prediction only]
Probab=98.85 E-value=6.3e-08 Score=82.66 Aligned_cols=131 Identities=17% Similarity=0.103 Sum_probs=77.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHH-----HHHh-hchhHhHHHHHHHHHHHHcCCCEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK-----AFRE-SDEKGYQQAETEVLKQLSSMGRLV 167 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~e-----i~~~-~ge~~fr~~e~~vl~~l~~~~~~V 167 (278)
+.+++.|.||+||||+|+.|++.+|+..+.+|.+.+...| .+... ++.. .....|..+......-+....+.|
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV 80 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV 80 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-CcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 5678899999999999999999999999999999888777 33211 0000 011122222222212222334333
Q ss_pred EEeCCceeechhHHHhh----h-C---CcEEEEEcCHHHHHhh-hcCCC-CCCChHHHHHHHHHHhhhccc
Q 023749 168 VCAGNGAVQSSANLALL----R-H---GISLWIDVPPGMVARM-DHSGF-PESEVLPQLFALYKEMRDGYA 228 (278)
Q Consensus 168 I~~g~g~v~~~~~~~~L----~-~---~~vV~L~a~~e~l~~R-~~r~r-p~~~~~~~l~~~~~er~~~Y~ 228 (278)
++. ....+..++.. + . -+.|++.+|.+++.+| ..|.- +.+.....++.+..+.+++..
T Consensus 81 lDa---~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 81 LDA---TFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPWTE 148 (170)
T ss_pred Eec---ccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCccc
Confidence 332 23333333322 2 2 2569999999999999 44432 233334566667677666554
No 122
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.85 E-value=9.2e-08 Score=83.97 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=32.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~ 130 (278)
.++.|+++|+|||||||+|+.|++++|+.++...+++++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 467899999999999999999999999987655555444
No 123
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.84 E-value=4e-08 Score=85.42 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+|..|+|+|++||||||+++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 688999999999999999999999875
No 124
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.83 E-value=2.1e-09 Score=111.62 Aligned_cols=77 Identities=22% Similarity=0.170 Sum_probs=67.5
Q ss_pred cccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhhh------ccCCcEEEEEccCCCc
Q 023749 47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIST------ELKGTSVFLVGMNNAI 105 (278)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~------~~~~~~I~L~G~~GSG 105 (278)
...||+|.++|||.+|..++||++.. .||++ ..+|+++.++.. ...|..|+|+|+||+|
T Consensus 282 ~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~G 361 (784)
T PRK10787 282 SPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVG 361 (784)
T ss_pred CCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCC
Confidence 56788999999999999999998887 56664 789999998773 3578899999999999
Q ss_pred HHHHHHHHHHHhCCceec
Q 023749 106 KTHLGKFLADALRYYYFD 123 (278)
Q Consensus 106 KSTlAk~LAe~Lg~~~iD 123 (278)
|||+++.+|+.++.+++.
T Consensus 362 KTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 362 KTSLGQSIAKATGRKYVR 379 (784)
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999988754
No 125
>PLN02165 adenylate isopentenyltransferase
Probab=98.83 E-value=1.3e-08 Score=95.75 Aligned_cols=132 Identities=17% Similarity=0.285 Sum_probs=83.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--------------HHHHhCCCC---hHHHHHhhch---hH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRESDE---KG 148 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--------------i~~~~g~~~---i~ei~~~~ge---~~ 148 (278)
..-++.+|+|+|++||||||+|..||+.+++.++++|.+ .++..| .. +..+....+. ..
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~ 117 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASE 117 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHH
Confidence 345688999999999999999999999999999999987 344444 22 1111222222 45
Q ss_pred hHHHHHHHHHHHHcCCCEEEEeCCceeec---------hhH---------HH-hhh-CCcEEEEEcCHHHHHhh-hcC--
Q 023749 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQS---------SAN---------LA-LLR-HGISLWIDVPPGMVARM-DHS-- 205 (278)
Q Consensus 149 fr~~e~~vl~~l~~~~~~VI~~g~g~v~~---------~~~---------~~-~L~-~~~vV~L~a~~e~l~~R-~~r-- 205 (278)
|+.....++.++...+...|.+||+..+- +.. .. .++ ..+++||+.+.+++.+| ++|
T Consensus 118 F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd 197 (334)
T PLN02165 118 FRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVD 197 (334)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHH
Confidence 66666677777776666777777643211 100 00 022 23578999999999999 544
Q ss_pred CCCCCChHHHHHHHHH
Q 023749 206 GFPESEVLPQLFALYK 221 (278)
Q Consensus 206 ~rp~~~~~~~l~~~~~ 221 (278)
..-.....++++.+++
T Consensus 198 ~Ml~~GlldEv~~L~~ 213 (334)
T PLN02165 198 EMMDSGMFEELAEFYD 213 (334)
T ss_pred HHHHCCHHHHHHHHHH
Confidence 1112223455555544
No 126
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.82 E-value=4.7e-08 Score=84.92 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred cEEEEEcC-HHHHHhh-hcCCC-CCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 188 ISLWIDVP-PGMVARM-DHSGF-PESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 188 ~vV~L~a~-~e~l~~R-~~r~r-p~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
++|||..| .+++.+| ..|+. +..+....+.++..+.. ....+|.+|.| + +.++...++.+++
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~-~~~~~D~vI~N-------------~-dle~a~~ql~~ii 182 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELD-EANEFDYKIIN-------------D-DLEDAIADLEAII 182 (186)
T ss_pred EEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hhccCCEEEEC-------------c-CHHHHHHHHHHHH
Confidence 68999985 6888888 55543 22334445555433322 12358999984 2 7899999999888
Q ss_pred hh
Q 023749 265 NA 266 (278)
Q Consensus 265 ~~ 266 (278)
.+
T Consensus 183 ~~ 184 (186)
T PRK14737 183 CG 184 (186)
T ss_pred hc
Confidence 64
No 127
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.81 E-value=1.1e-08 Score=93.47 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee---cCchHHHHHhC
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF---DSDSLVFEAAG 133 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i---D~D~li~~~~g 133 (278)
..+|+|+.-=.. =.-++|++.|+.|||||++||.||++||+.++ ++|.+....+|
T Consensus 57 ~~l~Dktskrf~-enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg 114 (393)
T KOG3877|consen 57 DGLKDKTSKRFH-ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG 114 (393)
T ss_pred hhhcchhhhhhc-ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence 445454433222 24678999999999999999999999997664 67776655444
No 128
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.80 E-value=7.2e-09 Score=89.95 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=22.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+|.|+|++||||||+|+.|++.|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999997
No 129
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.79 E-value=2e-08 Score=86.45 Aligned_cols=134 Identities=23% Similarity=0.365 Sum_probs=71.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhc--------------------------hh
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESD--------------------------EK 147 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~-ei~~~~g--------------------------e~ 147 (278)
+|.|.+..|||++++|+.||++||++++|. +++.+......+. +.+.... ..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 588999999999999999999999999997 5555433210000 0111100 11
Q ss_pred HhHHHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHHHHHHH
Q 023749 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM--DHSGFPESEVLPQLFALYKE 222 (278)
Q Consensus 148 ~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~~~~~e 222 (278)
.+.....+++.+++..+++||. |-+ .++ .|+ +.+-|||.+|.+.+.+| ++.+...++....+.+.-.+
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~-GR~-----a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~ 152 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIV-GRC-----ANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKR 152 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEE-STT-----HHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEE-ecC-----Hhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2223344677788777777775 322 122 344 34789999999999999 33344433344445444444
Q ss_pred hhhccc-----------cCcEEEec
Q 023749 223 MRDGYA-----------TADVTVSL 236 (278)
Q Consensus 223 r~~~Y~-----------~AD~vId~ 236 (278)
|..+|+ .-|++||+
T Consensus 153 R~~~~~~~~~~~~~d~~~YDLvint 177 (179)
T PF13189_consen 153 RRAYYKYYTGIDWGDPSNYDLVINT 177 (179)
T ss_dssp HHHHHHHH-SS-TTBGGG-SEEEEE
T ss_pred HHHHHHHHhCCCCCCchhceEEEeC
Confidence 443332 36788874
No 130
>PTZ00301 uridine kinase; Provisional
Probab=98.77 E-value=1.2e-07 Score=84.06 Aligned_cols=37 Identities=16% Similarity=0.042 Sum_probs=29.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF 129 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li~ 129 (278)
-..|.|.|+|||||||+|+.|++.+. ...+..|.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 36789999999999999999988772 23566777653
No 131
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.77 E-value=1.8e-07 Score=82.91 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=44.5
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCC----CCCh---HHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHH
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFP----ESEV---LPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMT 257 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp----~~~~---~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva 257 (278)
+++++||++|+++..+| .+|+.. +... .+.+++.|.+....+...-++|| .+.++|++.
T Consensus 128 PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vId-------------a~~~~e~v~ 194 (208)
T COG0125 128 PDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPERIIVID-------------ASRPLEEVH 194 (208)
T ss_pred CCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEE-------------CCCCHHHHH
Confidence 58999999999999999 444322 1111 22223333333222222235677 457899999
Q ss_pred HHHHHHhhhcCC
Q 023749 258 LEVKWLYNASIS 269 (278)
Q Consensus 258 ~~I~~~i~~~~~ 269 (278)
++|.+.+...+.
T Consensus 195 ~~i~~~l~~~l~ 206 (208)
T COG0125 195 EEILKILKERLG 206 (208)
T ss_pred HHHHHHHHHhhc
Confidence 999999987764
No 132
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.76 E-value=5.5e-08 Score=82.70 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=24.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
|+.|+|+|++||||||+++.|++.++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccc
Confidence 6789999999999999999999876543
No 133
>PRK12338 hypothetical protein; Provisional
Probab=98.74 E-value=4.4e-07 Score=85.08 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-cCchHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFE 130 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-D~D~li~~ 130 (278)
.+..|+++|+|||||||+|+.||+++|+.++ ++|.+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~ 42 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREV 42 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH
Confidence 4678999999999999999999999999988 55544443
No 134
>PRK07933 thymidylate kinase; Validated
Probab=98.73 E-value=1.7e-07 Score=83.00 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+.|+|.|+.||||||+++.|++.|.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999984
No 135
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.73 E-value=7.6e-08 Score=85.51 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=31.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCc---eecCchHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVF 129 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~---~iD~D~li~ 129 (278)
..|.|.|.+||||||+|+.|++.++-. .++.|++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk 47 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK 47 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence 578889999999999999999999955 677788765
No 136
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.70 E-value=3.1e-07 Score=79.10 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=25.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.|+|.|++||||||+++.|++.+|+.++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 48999999999999999999998886653
No 137
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.70 E-value=1.9e-07 Score=83.28 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=73.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc-----e-ecCchHHH-----HHhCCCChHHHHHhhchhHhHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQL 160 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-----~-iD~D~li~-----~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l 160 (278)
.+..|.|+|++||||||+++.|+..+... + +..|++.. ...|...............+. +++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~----~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA----ALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH----HHHHHH
Confidence 46789999999999999999999887431 2 55554321 111100000000000001111 112221
Q ss_pred H--------------------------cCCCEEEEeCCceeechhHHHhhh--CCcEEEEEcCHHHHHhh-hcC----CC
Q 023749 161 S--------------------------SMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS----GF 207 (278)
Q Consensus 161 ~--------------------------~~~~~VI~~g~g~v~~~~~~~~L~--~~~vV~L~a~~e~l~~R-~~r----~r 207 (278)
. .....||..|.........+..+. .+.+|||++|.+++.+| ..| ++
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g~ 187 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGGL 187 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcCC
Confidence 1 023345555655554445555554 67999999999999999 333 44
Q ss_pred CCCChHHHHHH-HHHH---hhhccccCcEEEecC
Q 023749 208 PESEVLPQLFA-LYKE---MRDGYATADVTVSLQ 237 (278)
Q Consensus 208 p~~~~~~~l~~-~~~e---r~~~Y~~AD~vId~~ 237 (278)
..++....+.. ++.. ..+.-..||++|+++
T Consensus 188 s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 188 SPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred CHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 33333333321 1111 111122599999964
No 138
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.69 E-value=3.2e-07 Score=84.28 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (278)
..|+|+|.|||||||+|+.|++.+ ++ .+++.|.+. .. ... +.....|...|..-...+++..+....||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~-~~~--y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI 75 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---ID-RND--YADSKKEKEARGSLKSAVERALSKDTIVI 75 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----T-TSS--S--GGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cc-hhh--hhchhhhHHHHHHHHHHHHHhhccCeEEE
Confidence 479999999999999999999975 33 345544443 11 111 11222233333322222334444455666
Q ss_pred EeCCceeechhHHHhh---h-C---CcEEEEEcCHHHHHhh-hcCCCC---CCChHHHHHHHHHHhhhc--cccCcEEEe
Q 023749 169 CAGNGAVQSSANLALL---R-H---GISLWIDVPPGMVARM-DHSGFP---ESEVLPQLFALYKEMRDG--YATADVTVS 235 (278)
Q Consensus 169 ~~g~g~v~~~~~~~~L---~-~---~~vV~L~a~~e~l~~R-~~r~rp---~~~~~~~l~~~~~er~~~--Y~~AD~vId 235 (278)
..+. ..+..-.+++. + . ..+||+++|.|.+.+| ..|+.+ .++..+.|...|++-.+. ++..-++|+
T Consensus 76 ~Dd~-nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~ 154 (270)
T PF08433_consen 76 LDDN-NYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTID 154 (270)
T ss_dssp E-S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred EeCC-chHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence 5432 23322222222 2 2 3689999999999999 555433 223344444455543332 224667887
Q ss_pred cCcccccccccCCCCCCHHHHHHHH
Q 023749 236 LQKVASQLGYDDLDAVTTEDMTLEV 260 (278)
Q Consensus 236 ~~~va~~~~~~Dts~~tpeeva~~I 260 (278)
. +.+....+++.+.|
T Consensus 155 ~----------~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 155 S----------SDEELPLEEIWNAL 169 (270)
T ss_dssp -----------TTS---HHHHHHHH
T ss_pred c----------CCCCCCHHHHHHHH
Confidence 2 12445567777776
No 139
>PRK13974 thymidylate kinase; Provisional
Probab=98.67 E-value=2.3e-06 Score=75.56 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=25.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.|..|+|.|++||||||+++.|++.|.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999884
No 140
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.67 E-value=4.4e-07 Score=79.51 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=31.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li 128 (278)
+|..|.|+|++||||||+++.|+..++ +.++..|...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 578899999999999999999998875 5567777754
No 141
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.65 E-value=4.4e-08 Score=77.79 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 023749 96 VFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
|+|.|++||||||+|+.|++.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~ 23 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG 23 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999983
No 142
>PRK07667 uridine kinase; Provisional
Probab=98.62 E-value=3.9e-07 Score=79.30 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=31.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE 130 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~ 130 (278)
..+|.|.|++||||||+|+.|++.++ ..+++.|++...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 34888999999999999999999873 348889887643
No 143
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.58 E-value=4.8e-07 Score=79.57 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=24.2
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+--.++.|+|+|++||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3347889999999999999999999764
No 144
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.56 E-value=4.3e-07 Score=90.46 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=62.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
.+..|+++|+|||||||+|+.+++.+|+.+++.|.+ + . +..+...+...+......||+..
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-----g-~-------------~~~~~~~a~~~L~~G~sVVIDaT 428 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-----G-S-------------TQNCLTACERALDQGKRCAIDNT 428 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-----H-H-------------HHHHHHHHHHHHhCCCcEEEECC
Confidence 577899999999999999999999999999999875 1 0 11111223334445555666533
Q ss_pred CceeechhHHH---hh-h-CC---cEEEEEcCHHHHHhh-hcCCC
Q 023749 172 NGAVQSSANLA---LL-R-HG---ISLWIDVPPGMVARM-DHSGF 207 (278)
Q Consensus 172 ~g~v~~~~~~~---~L-~-~~---~vV~L~a~~e~l~~R-~~r~r 207 (278)
. .++..+. .+ + .+ ..||+++|.+++.+| ..|.+
T Consensus 429 n---~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 429 N---PDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred C---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 2 2232222 22 2 33 479999999999999 55543
No 145
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.56 E-value=1.1e-06 Score=75.64 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=23.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
++.|+|+||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999998875
No 146
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.56 E-value=4e-08 Score=102.16 Aligned_cols=77 Identities=29% Similarity=0.222 Sum_probs=63.6
Q ss_pred cccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhh------hccCCcEEEEEccCCCc
Q 023749 47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIS------TELKGTSVFLVGMNNAI 105 (278)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~~GSG 105 (278)
..+|++|.++|+|.+|.+++||.+.. .+|.+ ..+|+++.++. +...+..++|.|+||+|
T Consensus 280 ~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~G 359 (775)
T TIGR00763 280 EPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVG 359 (775)
T ss_pred CCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCC
Confidence 56789999999999999999998766 23332 56788877754 34567889999999999
Q ss_pred HHHHHHHHHHHhCCceec
Q 023749 106 KTHLGKFLADALRYYYFD 123 (278)
Q Consensus 106 KSTlAk~LAe~Lg~~~iD 123 (278)
||++|+.||+.++.+++.
T Consensus 360 KT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 360 KTSLGKSIAKALNRKFVR 377 (775)
T ss_pred HHHHHHHHHHHhcCCeEE
Confidence 999999999999988764
No 147
>PRK15453 phosphoribulokinase; Provisional
Probab=98.55 E-value=5.9e-07 Score=82.90 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~ 129 (278)
++..|.|+|.|||||||+++.|++.++ ..+++.|.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 467899999999999999999998774 55788888763
No 148
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.54 E-value=2.4e-07 Score=79.61 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+++.|+|+||+||||+|+++.|.+.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999999998774
No 149
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.52 E-value=2.8e-07 Score=84.79 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=28.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCceecCchHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV 128 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li 128 (278)
.|.|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999999877 45678888764
No 150
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.51 E-value=3.7e-07 Score=79.58 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF 129 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~ 129 (278)
+|.|.|.+||||||+|+.|++.+ ++.+++.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 47899999999999999999998 689999998864
No 151
>PLN02348 phosphoribulokinase
Probab=98.51 E-value=2.7e-07 Score=88.57 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=24.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+..|.|.|.+||||||+++.|++.||
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356788999999999999999999996
No 152
>PRK07429 phosphoribulokinase; Provisional
Probab=98.45 E-value=1.6e-06 Score=81.81 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=31.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li 128 (278)
++..|.|+|++||||||+++.|++.++ ...++.|++.
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 345889999999999999999999987 5567788764
No 153
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.43 E-value=3.1e-06 Score=73.50 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+|+.|+|+||+|+||||+.+.|-+..++.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~ 31 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLR 31 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeE
Confidence 68999999999999999999998877544
No 154
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.41 E-value=2e-06 Score=78.98 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=29.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~ 129 (278)
.|.++|.+||||||+++.|++.++ ..+++.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 488999999999999999998774 45788888765
No 155
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.41 E-value=8.2e-06 Score=69.55 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=88.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc----eec------CchHHHHHhCCCChHHHHHhhchhHhH----------H
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----YFD------SDSLVFEAAGGESAAKAFRESDEKGYQ----------Q 151 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~----~iD------~D~li~~~~g~~~i~ei~~~~ge~~fr----------~ 151 (278)
+|+.|+++||+|+||-|+-..+...+.-. |+. +|.--|.... .+-.++....++..|. -
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~a-vs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDA-LSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccc-cCHHHHHHHhhcCceeEEehhcCcccc
Confidence 68999999999999999999888877432 221 1110000000 1223333333333331 0
Q ss_pred HHHHHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc--
Q 023749 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-- 228 (278)
Q Consensus 152 ~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-- 228 (278)
+..++-..+ ..+..||..|...++ +..+.....-++|.|.++++++.+| ..|||.. .+++.+.. .|...|.
T Consensus 83 ip~eId~wl-~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs---~eeI~aRL-~R~a~~~~~ 156 (192)
T COG3709 83 IPAEIDLWL-AAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRES---REEILARL-ARAARYTAG 156 (192)
T ss_pred CchhHHHHH-hCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCC---HHHHHHHH-HhhcccccC
Confidence 111122223 245567766654444 2222222234689999999999999 8888753 34554443 3445555
Q ss_pred cCcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 229 TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 229 ~AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
..|+ +||| ...+|+..+..+..+.+..
T Consensus 157 ~~dv~~idN-------------sG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 157 PGDVTTIDN-------------SGELEDAGERLLALLHQDS 184 (192)
T ss_pred CCCeEEEcC-------------CCcHHHHHHHHHHHHHhhc
Confidence 3554 6664 3477888888888876444
No 156
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.38 E-value=6.5e-06 Score=80.69 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=34.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc-eecCchHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEA 131 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-~iD~D~li~~~ 131 (278)
.+..|+++|++|+||||+|..||+++|+. ++++|.+.+.+
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l 294 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL 294 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence 47889999999999999999999999998 66888876543
No 157
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.38 E-value=6.3e-06 Score=70.62 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.4
Q ss_pred EEccCCCcHHHHHHHHHHHhC
Q 023749 98 LVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 98 L~G~~GSGKSTlAk~LAe~Lg 118 (278)
|.|+.||||||+++.|+++|.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~ 21 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALK 21 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999884
No 158
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.34 E-value=1e-06 Score=75.94 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=30.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF 129 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li~ 129 (278)
.|.|.|.+||||||+|+.|++.+ +..+++.|++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 47899999999999999999987 346788888875
No 159
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=98.34 E-value=8.8e-06 Score=69.17 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=92.3
Q ss_pred HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCce--ecCchHHHHHhCC-CChHH------HHHhhchhHh
Q 023749 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGG-ESAAK------AFRESDEKGY 149 (278)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD~D~li~~~~g~-~~i~e------i~~~~ge~~f 149 (278)
-+..+-.+-++..+|+.|+|-|.+.+|||++|..+.+-..-|+ +-.|.+++..... ..... ....+|++++
T Consensus 9 r~~~~~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v 88 (205)
T COG3896 9 RMRYRLAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWV 88 (205)
T ss_pred HHHHHHHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceee
Confidence 3455667778999999999999999999999999987666554 4456655442110 00000 0112233222
Q ss_pred H-----------HHHHHHHHHHHcCCCEEEEeCCceeec----hhHHHhhh--CCcEEEEEcCHHHHHhhhcCCCCCCCh
Q 023749 150 Q-----------QAETEVLKQLSSMGRLVVCAGNGAVQS----SANLALLR--HGISLWIDVPPGMVARMDHSGFPESEV 212 (278)
Q Consensus 150 r-----------~~e~~vl~~l~~~~~~VI~~g~g~v~~----~~~~~~L~--~~~vV~L~a~~e~l~~R~~r~rp~~~~ 212 (278)
. .-....+...+..++.+|... +... .+....|. .-.+|=+.||.|+.++|+.| ++....
T Consensus 89 ~v~~gpi~e~~~~~~r~ai~a~ad~G~~~i~Dd--v~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~r-r~dR~p 165 (205)
T COG3896 89 TVHPGPILELAMHSRRRAIRAYADNGMNVIADD--VIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELR-RGDRHP 165 (205)
T ss_pred EeechhHHHHHHHHHHHHHHHHhccCcceeehh--cccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhh-cCCcCc
Confidence 1 011223444444555555432 1111 12222333 22467789999999999322 221111
Q ss_pred HHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 213 LPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 213 ~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
...+-.+++ -..-...|+.+| |+..||.|++.+|-+.++
T Consensus 166 -G~~rg~~r~-vHa~~~YDlevD------------TS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 166 -GWNRGSARA-VHADAEYDLEVD------------TSATTPHECAREIHERYQ 204 (205)
T ss_pred -chhhhhHHH-hcCCcceeeeec------------ccCCCHHHHHHHHHHHhc
Confidence 011111111 110012355554 899999999999987764
No 160
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.33 E-value=1.8e-05 Score=73.68 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=36.1
Q ss_pred hhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCc-eecCchHHH
Q 023749 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVF 129 (278)
Q Consensus 86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-~iD~D~li~ 129 (278)
.|...=.+..|++.|++||||||+|..||++||++ ++.+|.+.+
T Consensus 85 ~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 85 RIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 34443357889999999999999999999999998 678887763
No 161
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.4e-05 Score=72.42 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=32.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCce-ecCchHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVF 129 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~-iD~D~li~ 129 (278)
+...+..|+|-|.||+||||+|..||.+||+.. +.+|.+.+
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 444466677778999999999999999999986 56666543
No 162
>COG4639 Predicted kinase [General function prediction only]
Probab=98.31 E-value=1.4e-05 Score=67.71 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=63.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCCh-HHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA-AKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i-~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
...++|+|.+||||||+++.. .+..+.++.|++.... | ... .+......+..+..+...+-..+....-.||.+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g-~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt 77 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-G-VSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT 77 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-h-hchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 457899999999999999975 3578888888876543 2 111 1111111233444444433334444444556432
Q ss_pred CceeechhHHHhh---h--C---CcEEEEEcCHHHHHhh-hcCCC
Q 023749 172 NGAVQSSANLALL---R--H---GISLWIDVPPGMVARM-DHSGF 207 (278)
Q Consensus 172 ~g~v~~~~~~~~L---~--~---~~vV~L~a~~e~l~~R-~~r~r 207 (278)
-..++++..+ . . ...||++.|.+.|.+| +.+.|
T Consensus 78 ---n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R 119 (168)
T COG4639 78 ---NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER 119 (168)
T ss_pred ---cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch
Confidence 1234444322 1 2 3579999999999999 44444
No 163
>PRK05439 pantothenate kinase; Provisional
Probab=98.27 E-value=8.9e-06 Score=76.23 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li 128 (278)
+.+|.|.|++||||||+|+.|++.++ ...+.+|+++
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 45788999999999999999999774 3467777765
No 164
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.23 E-value=1.9e-06 Score=83.48 Aligned_cols=61 Identities=13% Similarity=0.249 Sum_probs=45.7
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch--HHH-HHhCCCChHHHHHhhchhHhH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVF-EAAGGESAAKAFRESDEKGYQ 150 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~--li~-~~~g~~~i~ei~~~~ge~~fr 150 (278)
.+..+++|+|+|+||+|||++|+.||+.++++|++.|. +.+ ...| ..+.+++....+..|+
T Consensus 43 ~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 43 DEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK 106 (441)
T ss_pred cccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999884 333 2344 4555566555555443
No 165
>PHA03132 thymidine kinase; Provisional
Probab=98.21 E-value=9.7e-06 Score=81.47 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~ 121 (278)
.++.|+|.|..||||||+++.|++.+|..+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~V 285 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNV 285 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 478999999999999999999999985443
No 166
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.15 E-value=5.9e-06 Score=73.60 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li 128 (278)
.|.|.|++||||||+++.|+..+. ..++++|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999999883 3456777764
No 167
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.15 E-value=1.5e-05 Score=74.00 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li 128 (278)
.+..|.|.|++||||||+++.|+..+. ..++.+|.+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 356888999999999999999987664 3356667654
No 168
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.12 E-value=1.8e-05 Score=69.02 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=31.2
Q ss_pred hhhccCCcEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHH
Q 023749 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF 129 (278)
Q Consensus 87 ~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~ 129 (278)
+.+.-.+..|++.|+|||||||++..+.+.+ ++.++|.|.+..
T Consensus 9 ~~~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 9 YPPQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp ----SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCcccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 3345578889999999999999999999987 688899999753
No 169
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=3.8e-06 Score=79.45 Aligned_cols=162 Identities=18% Similarity=0.251 Sum_probs=87.6
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---CCcee--cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i--D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~ 163 (278)
+-+.|-.|+++|.+|+||||++-.|.+.| |+|++ |.|.+..-... .+. +-.+++++..|.+. ++.+-++.
T Consensus 46 ~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~k--nlg-fs~edreenirria-evaklfad- 120 (627)
T KOG4238|consen 46 GGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNK--NLG-FSPEDREENIRRIA-EVAKLFAD- 120 (627)
T ss_pred CCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhh--ccC-CCchhHHHHHHHHH-HHHHHHhc-
Confidence 55778899999999999999999998866 78875 56666544321 110 11233455555432 22233332
Q ss_pred CCEEEEeC--CceeechhHHHhhh--C---CcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---cCcEE
Q 023749 164 GRLVVCAG--NGAVQSSANLALLR--H---GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVT 233 (278)
Q Consensus 164 ~~~VI~~g--~g~v~~~~~~~~L~--~---~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~AD~v 233 (278)
...|..+. ..+-.+..|-..+. . -+-||+++|.+++.+|+-++........++.. |.-.+..|+ .+.++
T Consensus 121 aglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~g-ftgids~ye~pe~~e~v 199 (627)
T KOG4238|consen 121 AGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKG-FTGIDSDYEKPETPERV 199 (627)
T ss_pred CCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccc-ccccccccCCCCChhHH
Confidence 22222221 00111111211222 2 25799999999999992222110000001111 111122233 35556
Q ss_pred EecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
++ |...++.++++++++++.+.-
T Consensus 200 l~------------t~~~~v~~cvqqvve~lq~~~ 222 (627)
T KOG4238|consen 200 LK------------TNLSTVSDCVQQVVELLQEQN 222 (627)
T ss_pred hh------------cCCchHHHHHHHHHHHHHhcC
Confidence 55 667889999999999997543
No 170
>PHA00729 NTP-binding motif containing protein
Probab=98.02 E-value=4.7e-05 Score=68.27 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
|..|+-+.++.. ..-.+|+|+|+||+||||+|..|+++++.
T Consensus 3 ~~~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 3 WLAKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred hHHHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344555555543 34458999999999999999999999863
No 171
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.94 E-value=7.6e-06 Score=65.07 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=26.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 96 VFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
|+|.|+||+||||+++.+|+.++.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999887544
No 172
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.94 E-value=7e-05 Score=75.56 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=36.0
Q ss_pred CccHHHHHHHHhhhh-ccC-CcEEEEEccCCCcHHHHHHHHHHHhC-CceecCchH
Q 023749 75 DPSFAVKKKAADIST-ELK-GTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (278)
Q Consensus 75 ~~~~~~~~~~~~~~~-~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg-~~~iD~D~l 127 (278)
|.-.-+--+|..+.. ... ...|.|.|++||||||+++.|+..+. ...+..|++
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 333444444455543 222 35788899999999999999999873 346777765
No 173
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.93 E-value=2.3e-05 Score=76.16 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=33.5
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~ 126 (278)
+..+.+|+|+|++|+|||++|+.||+.++.+|+..|.
T Consensus 47 e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 3457899999999999999999999999999988875
No 174
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.89 E-value=7.2e-05 Score=65.02 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=84.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH--HHH---hCCCChHH---------------HHHhhchhHhH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--FEA---AGGESAAK---------------AFRESDEKGYQ 150 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li--~~~---~g~~~i~e---------------i~~~~ge~~fr 150 (278)
-.|..|++.|..+|||||.+..|.+.+. +..+--.++ .+. .| ..+.. +|...+++.
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~~FP~Rst~iG-k~i~~YL~k~~dl~d~~iHLlFSAnRwe~-- 78 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELLRFPERSTSIG-KLIDGYLRKKSDLPDHTIHLLFSANRWEH-- 78 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccChHHhhhcchhccccc-HHHHHHHHhccCCcHHHHHHHhccchhhH--
Confidence 4688999999999999999999999883 222211110 000 11 11111 111111111
Q ss_pred HHHHHHHHHHHcCCCEEEEe--CCceeech-----hHH------HhhhCCcEEEEEcCHHHHHhhhcCC--CCCCC-hHH
Q 023749 151 QAETEVLKQLSSMGRLVVCA--GNGAVQSS-----ANL------ALLRHGISLWIDVPPGMVARMDHSG--FPESE-VLP 214 (278)
Q Consensus 151 ~~e~~vl~~l~~~~~~VI~~--g~g~v~~~-----~~~------~~L~~~~vV~L~a~~e~l~~R~~r~--rp~~~-~~~ 214 (278)
...+.++++....+|++- ..|+.... ..| .++++|+++||++|++.+.+|...| |.... ..+
T Consensus 79 --~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqe 156 (208)
T KOG3327|consen 79 --VSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQE 156 (208)
T ss_pred --HHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHH
Confidence 112344555544444431 11211110 011 1345789999999999988883333 22111 111
Q ss_pred HHHHHHHHhhhccccC-cEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCCCccc
Q 023749 215 QLFALYKEMRDGYATA-DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSR 274 (278)
Q Consensus 215 ~l~~~~~er~~~Y~~A-D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~~~~~ 274 (278)
.....|..-.. .+.. -.++| ...+.|++.+.|..++...++.|.-+
T Consensus 157 kv~~~~q~l~r-~e~~~~~~vD-------------As~sve~V~~~V~~i~e~~~~~~~~~ 203 (208)
T KOG3327|consen 157 KVLVFFQKLLR-KEDLNWHVVD-------------ASKSVEKVHQQVRSLVENVLSEPIEK 203 (208)
T ss_pred HHHHHHHHHHh-ccCCCeEEEe-------------cCccHHHHHHHHHHHHHHhccCCCCC
Confidence 12222222110 0122 24666 24899999999988888777655444
No 175
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.87 E-value=4.8e-05 Score=71.21 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
+++.|+|+|++|||||++|..||+.++..+++.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 467899999999999999999999999999999884
No 176
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.5e-05 Score=76.48 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=69.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhCC--CChHHHHHh-------------------hc
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGG--ESAAKAFRE-------------------SD 145 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g~--~~i~ei~~~-------------------~g 145 (278)
+-..++-++|.||||||||.+|+.+|..+|.||+.. -.++-.+.|. +.+.++|++ .+
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkR 298 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKR 298 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccch
Confidence 545678899999999999999999999999999864 2233222220 114444442 22
Q ss_pred hhHhHHHHHHHHHHHHcC----------CCEEEEeCCceeechhHHH-hhh----CCcEEEEEcCHHHHHhh
Q 023749 146 EKGYQQAETEVLKQLSSM----------GRLVVCAGNGAVQSSANLA-LLR----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 146 e~~fr~~e~~vl~~l~~~----------~~~VI~~g~g~v~~~~~~~-~L~----~~~vV~L~a~~e~l~~R 202 (278)
+.+-+++|++++.++... +.-|+.-|. --+++.++ .|+ .+.-|.|.+|.++..++
T Consensus 299 e~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA--TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 299 EEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA--TNRPDSLDPALRRAGRFDREICLGVPSETAREE 368 (802)
T ss_pred hhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec--CCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence 445678999998888641 111221111 11222221 343 45789999999886665
No 177
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00016 Score=67.97 Aligned_cols=31 Identities=32% Similarity=0.231 Sum_probs=27.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
++.|++.||||+|||+++|.||++|.++..|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~ 207 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTND 207 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecC
Confidence 6689999999999999999999999877544
No 178
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.80 E-value=1.9e-05 Score=57.54 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|+++|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 179
>PLN02772 guanylate kinase
Probab=97.77 E-value=0.00032 Score=67.66 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..+.|+|+||+|+||+||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999998764
No 180
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.76 E-value=5.8e-05 Score=62.39 Aligned_cols=43 Identities=33% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 78 FAVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
.+.++-+..++..| .+..|+|.|..|+||||++|.+++.+|+.
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45556677777777 46799999999999999999999999975
No 181
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.0002 Score=67.21 Aligned_cols=129 Identities=23% Similarity=0.328 Sum_probs=76.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH--------------HHHhCCCChHHHHH------hhchhHhHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--------------FEAAGGESAAKAFR------ESDEKGYQQ 151 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li--------------~~~~g~~~i~ei~~------~~ge~~fr~ 151 (278)
+.++|+++|..|||||-|+--||.+++...|.+|.+- ++..| +. ..+.. ++-...|+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~g-VP-HHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKG-VP-HHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCC-CC-hHHhCcCChHhhccHHHHHH
Confidence 5689999999999999999999999999999887741 11111 10 00100 222344666
Q ss_pred HHHHHHHHHHcCCCEEEEeCCceeechhHHH-------------------hhh-CCcEEEEEcCHHHHHhh-hcC--CCC
Q 023749 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA-------------------LLR-HGISLWIDVPPGMVARM-DHS--GFP 208 (278)
Q Consensus 152 ~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~-------------------~L~-~~~vV~L~a~~e~l~~R-~~r--~rp 208 (278)
.-..+++++.+.+..=|.+||+-..-+.-+. .|+ ....+||+++..++.+| .+| ..-
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml 163 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDML 163 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHHHH
Confidence 6666777877654443445654322111110 112 24799999999999999 433 111
Q ss_pred CCChHHHHHHHHHH
Q 023749 209 ESEVLPQLFALYKE 222 (278)
Q Consensus 209 ~~~~~~~l~~~~~e 222 (278)
.....+++..+|.-
T Consensus 164 ~~Gl~eE~~~f~~~ 177 (348)
T KOG1384|consen 164 ESGLLEELRDFYDP 177 (348)
T ss_pred HcchHHHHHHHhhh
Confidence 12234555555443
No 182
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.73 E-value=0.0002 Score=64.10 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=39.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc-----eecCchHHHHHhCCCChHHHHHhhchhH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY-----YFDSDSLVFEAAGGESAAKAFRESDEKG 148 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-----~iD~D~li~~~~g~~~i~ei~~~~ge~~ 148 (278)
.-+|+++|.|+.|||++|+.|++.|+|. +++.+++.++..+...-.++|....++.
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~ 72 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEA 72 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHH
Confidence 3468889999999999999999988655 5677888888776322234555444443
No 183
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00022 Score=71.99 Aligned_cols=66 Identities=24% Similarity=0.254 Sum_probs=47.4
Q ss_pred HHHHHHHHhhh-------------hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhCCCC---hHH
Q 023749 78 FAVKKKAADIS-------------TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGGES---AAK 139 (278)
Q Consensus 78 ~~~~~~~~~~~-------------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g~~~---i~e 139 (278)
.++|++.++-. +.=.++-|++.||||||||++||.||..-+.+|+.. -+++-.++| .+ +.+
T Consensus 440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG-eSEr~ir~ 518 (693)
T KOG0730|consen 440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG-ESERAIRE 518 (693)
T ss_pred HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC-chHHHHHH
Confidence 56777666433 323578899999999999999999999999998764 556666666 33 444
Q ss_pred HHHhh
Q 023749 140 AFRES 144 (278)
Q Consensus 140 i~~~~ 144 (278)
+|...
T Consensus 519 iF~kA 523 (693)
T KOG0730|consen 519 VFRKA 523 (693)
T ss_pred HHHHH
Confidence 55543
No 184
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0009 Score=62.50 Aligned_cols=65 Identities=28% Similarity=0.293 Sum_probs=47.9
Q ss_pred cccccccCCcc-HHHHHHHHhhh-----hccCCc-----EEEEEccCCCcHHHHHHHHHHHhCCcee--cCchHHHHHhC
Q 023749 67 TVTKVAAEDPS-FAVKKKAADIS-----TELKGT-----SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (278)
Q Consensus 67 ~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~-----~I~L~G~~GSGKSTlAk~LAe~Lg~~~i--D~D~li~~~~g 133 (278)
.|..++.|+.. .+||+ +-|+ ..+.|+ -|+|.||||+|||.+||++|..-+-.|+ ++.+++-+++|
T Consensus 131 kWsDVAGLE~AKeALKE--AVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKE--AVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred chhhhccchhHHHHHHh--heeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 57777788877 45555 3444 333454 4999999999999999999998886665 45667777766
No 185
>PLN02840 tRNA dimethylallyltransferase
Probab=97.66 E-value=0.0001 Score=71.61 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=33.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
-+++.|+|+|++||||||++..||++++..+++.|.+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 4567899999999999999999999999999988873
No 186
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.61 E-value=8.8e-05 Score=68.08 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=24.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+.+|.+.|.+|+||||+|+.|+..+.
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~ 107 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLS 107 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHh
Confidence 466899999999999999999998774
No 187
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=6.7e-05 Score=58.55 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+.+++|+|++|+||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 6789999999999999999999988765
No 188
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.57 E-value=0.00012 Score=69.14 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=30.9
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
..+.++.|+|.|+||+||||+++.||+.+|++++
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 4456889999999999999999999999999986
No 189
>PLN02748 tRNA dimethylallyltransferase
Probab=97.52 E-value=0.00021 Score=70.47 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~ 126 (278)
++++|+|+|+.|||||++|..||+.++..+++.|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 56789999999999999999999999999999996
No 190
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.51 E-value=0.00026 Score=65.70 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
.|+|+|++|||||+++..|++.++..+++.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 489999999999999999999999999998874
No 191
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.50 E-value=0.00016 Score=65.84 Aligned_cols=43 Identities=23% Similarity=0.130 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
..+.+++..+.. .+..|+|.|++|+|||++|+.||+.+|.+++
T Consensus 8 ~~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 8 KRVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 345565555543 5889999999999999999999999998876
No 192
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.48 E-value=0.00024 Score=56.14 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=30.0
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---CCceec
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFD 123 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD 123 (278)
......-.+..++|.|++|+|||++++.++..+ +.+++.
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~ 52 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLY 52 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEE
Confidence 333333357899999999999999999999988 555443
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.47 E-value=0.00013 Score=59.27 Aligned_cols=28 Identities=36% Similarity=0.294 Sum_probs=25.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
.|+|+|++|+|||++++.||+.++.+++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 4789999999999999999999998874
No 194
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.45 E-value=0.0001 Score=61.77 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=22.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
+|+|+|.+|+||||+++.|++. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 5899999999999999999988 99988
No 195
>PRK06761 hypothetical protein; Provisional
Probab=97.44 E-value=0.00011 Score=67.97 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
+++.|+|+|++||||||+++.|++.++...+
T Consensus 2 m~~lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 2 MTKLIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 4678999999999999999999999976433
No 196
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00062 Score=61.29 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~ 132 (278)
++...+++|+||+||+|++.++++.++..++.+.+++++..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~i 54 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEI 54 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHH
Confidence 58899999999999999999999999999999998887743
No 197
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.40 E-value=0.00015 Score=65.08 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=25.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
-.+++|.||||+||||+|..+|+.+|..+.-
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 3579999999999999999999999988743
No 198
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.38 E-value=0.00022 Score=71.24 Aligned_cols=58 Identities=24% Similarity=0.221 Sum_probs=39.6
Q ss_pred ccc-cccccCCcc-HH-HHHHHHhhh--------hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 66 NTV-TKVAAEDPS-FA-VKKKAADIS--------TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 66 ~~~-~~~~~~~~~-~~-~~~~~~~~~--------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.+| -++.+-..+ ++ =|+|+.||. +.-..+.++|+||+||||||..+.||+.+|+.+..
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 345 344443333 22 366666666 22234578889999999999999999999987653
No 199
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.35 E-value=0.0002 Score=69.68 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=31.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~ 126 (278)
+....|+|+|++|+|||++|+.||+.++++|+..|-
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 356789999999999999999999999999876543
No 200
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.32 E-value=0.00029 Score=64.00 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
....++|.|+||+||||+|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999999875
No 201
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.32 E-value=0.0031 Score=61.13 Aligned_cols=33 Identities=18% Similarity=0.037 Sum_probs=28.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
...++|+|+|.+||||||+++.|++.+|..++.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 346789999999999999999999999987643
No 202
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00091 Score=69.08 Aligned_cols=47 Identities=26% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhcc------------CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 78 FAVKKKAADISTEL------------KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 78 ~~~~~~~~~~~~~~------------~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.+.|+-++||...| -++-++|+||||+|||-+||++|.+-|.||+..
T Consensus 317 deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 317 DEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence 45566667776333 366799999999999999999999999999864
No 203
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.30 E-value=0.00026 Score=70.39 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=32.7
Q ss_pred hhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 87 ~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
+.+.|.+.+.+|+||+||||||.-+.|++.+|+.++.
T Consensus 104 ~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 104 FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 3477788899999999999999999999999988653
No 204
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00022 Score=60.89 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..+.|+++|+||+||||+++.+++.|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 467899999999999999999998873
No 205
>CHL00181 cbbX CbbX; Provisional
Probab=97.28 E-value=0.00041 Score=64.27 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.+|+|.|+||+||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999875
No 206
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.27 E-value=0.00029 Score=60.36 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=27.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC--ceecCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRY--YYFDSD 125 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~--~~iD~D 125 (278)
++.|+|+|++||||||+|..|+..++. .++.+.
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 467999999999999999999999874 455553
No 207
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.26 E-value=0.00038 Score=56.82 Aligned_cols=37 Identities=35% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 84 AADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 84 ~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
|+.++..|+ |.+|+|.|..||||||+.|.+++.+|..
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 455565554 6689999999999999999999999875
No 208
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.25 E-value=0.0004 Score=68.96 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=31.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
-.++-|+|.|+||+|||.+|+.+|..+|++++..|
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 35678999999999999999999999999987654
No 209
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.24 E-value=0.00045 Score=63.82 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..|+|.|+||+||||+|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999888866
No 210
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.22 E-value=0.0004 Score=66.47 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceec
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD 123 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD 123 (278)
+.+.|+.|+|.|+||+|||.+|-.+|+.|| .||+.
T Consensus 46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 778999999999999999999999999998 77765
No 211
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.22 E-value=0.00031 Score=68.29 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
.+..|+|+|++|+|||++|+.||+.++++|.-.|
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 4568999999999999999999999998886443
No 212
>PRK06620 hypothetical protein; Validated
Probab=97.19 E-value=0.0032 Score=55.85 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhhc--cCC--cEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 78 FAVKKKAADISTE--LKG--TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 78 ~~~~~~~~~~~~~--~~~--~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
......++++... ..+ ..++|.|++|+|||++++.+++..+..++.
T Consensus 25 ~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 25 DQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred HHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 3345555555532 223 569999999999999999999988876655
No 213
>PRK09087 hypothetical protein; Validated
Probab=97.19 E-value=0.00096 Score=59.68 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li 128 (278)
.+..++|.|++|||||++++.+++..+..+++.+.+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~ 79 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG 79 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence 4567999999999999999999999999999886443
No 214
>PHA02244 ATPase-like protein
Probab=97.18 E-value=0.00069 Score=64.98 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=37.0
Q ss_pred HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
....++..++. .+..|+|.|++|+|||++++.++..+|++++..+.+
T Consensus 107 ~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 107 YETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred HHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 34444444443 477899999999999999999999999999866544
No 215
>PF13173 AAA_14: AAA domain
Probab=97.18 E-value=0.00051 Score=55.54 Aligned_cols=37 Identities=30% Similarity=0.216 Sum_probs=31.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC----CceecCchHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVF 129 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg----~~~iD~D~li~ 129 (278)
++.++|.|+.|+||||+++.+++.+. +.+++.|+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 67899999999999999999998875 66777776543
No 216
>PRK10646 ADP-binding protein; Provisional
Probab=97.17 E-value=0.00084 Score=56.79 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
.+.++-++.++..|+ |.+|+|.|.-|+||||++|.+++.||..
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 456666777887776 6688999999999999999999999974
No 217
>PHA03136 thymidine kinase; Provisional
Probab=97.17 E-value=0.0079 Score=57.75 Aligned_cols=25 Identities=20% Similarity=0.124 Sum_probs=22.0
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCC
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFPES 210 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp~~ 210 (278)
.+.+|||+++++++.+| .+|+|+.+
T Consensus 192 pD~IIyL~l~~e~~~~RI~kRgR~~E 217 (378)
T PHA03136 192 GGNIVIMDLDECEHAERIIARGRPGE 217 (378)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence 45899999999999999 88888864
No 218
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.16 E-value=0.00052 Score=61.48 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=29.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCce-ecCchHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE 130 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~-iD~D~li~~ 130 (278)
+.|.|+|++||||||+|+.+.+ .|.++ +.+.+.+++
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~ 37 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKE 37 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHH
Confidence 5799999999999999998855 67777 777666554
No 219
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00048 Score=65.18 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=34.4
Q ss_pred hhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
++..+..|++|+++||.|+|||.+|++||+-.|.||+-
T Consensus 43 ~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 43 ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 34478899999999999999999999999999999975
No 220
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.13 E-value=0.00072 Score=67.08 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=29.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
++.++|.|+||+|||++++.||..++.+++..+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 567999999999999999999999999987653
No 221
>PRK04195 replication factor C large subunit; Provisional
Probab=97.12 E-value=0.00061 Score=67.37 Aligned_cols=47 Identities=17% Similarity=0.154 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhcc----CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 78 FAVKKKAADISTEL----KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 78 ~~~~~~~~~~~~~~----~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
..+++...++.... .++.++|.|+||+||||+++.||+.+|+.++..
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34444455554322 267899999999999999999999999888754
No 222
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.11 E-value=0.0007 Score=59.32 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=37.0
Q ss_pred ccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchH
Q 023749 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (278)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~l 127 (278)
.+....+....++..-.+..|+|+|++|+|||++++.++..+. +.+++.+.+
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3444555566655444577899999999999999999998763 345555444
No 223
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0027 Score=56.01 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=29.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF 129 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~ 129 (278)
+|.|.|...|||||+|+.|.+.+ |...|+-|+++.
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 57788999999999999999888 577888888753
No 224
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.00047 Score=65.85 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=25.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+.+.++|.|||||||||+|+.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999999965
No 225
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.07 E-value=0.0043 Score=56.08 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=45.5
Q ss_pred CCcceecccccCCccccccccccCCccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 51 KPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
|+|-+.|+..++.+ ...-.+..+++.+..|.+..=...++.|.|+||+||||++..++++
T Consensus 83 ~~~~va~~~~~qv~------~~D~s~~de~y~~~~e~L~~n~~~l~glag~pGtgkst~~a~v~~a 142 (323)
T KOG2702|consen 83 QPNKVAEMIENQVL------FKDHSEDDEFYPVKYEALTSNNEELTGLAGRPGTGKSTRIAAVDNA 142 (323)
T ss_pred ChhHHHHHHHhccc------ccCcchhhhhhHHHHHHhcccchheeeeecCCCCcchhHHHHHHhh
Confidence 45556666665543 2333345788999999887667788999999999999999999885
No 226
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.07 E-value=0.00049 Score=66.31 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++.|+|.|+||+|||++|+.+|..++.+++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 467899999999999999999999999887643
No 227
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.98 E-value=0.0037 Score=57.56 Aligned_cols=47 Identities=21% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHHHHHhhh---------hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 78 FAVKKKAADIS---------TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 78 ~~~~~~~~~~~---------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.+-|.|+.=|. ++-++++|++.||||+|||-+||.||.+...|++..
T Consensus 127 EeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 127 EEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred HHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 45666665554 556789999999999999999999999999998764
No 228
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.96 E-value=0.00082 Score=63.95 Aligned_cols=33 Identities=24% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++.|+|.|+||+|||++++.++..++.+++..
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 367799999999999999999999999887654
No 229
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.96 E-value=0.00053 Score=56.45 Aligned_cols=29 Identities=34% Similarity=0.360 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
+|+|.|+||+||||+++.||+.+|..|.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 47899999999999999999999988754
No 230
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.95 E-value=0.0057 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..|+|+|.|.|||||.|+.|.+.|
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l 25 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREAL 25 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHH
Confidence 468999999999999999999887
No 231
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.94 E-value=0.0018 Score=62.26 Aligned_cols=41 Identities=15% Similarity=-0.002 Sum_probs=31.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g 133 (278)
+..+.|.||||+|||.+|+++|+++|++++.. .++..+..|
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45667779999999999999999999997654 444444444
No 232
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.94 E-value=0.0086 Score=53.66 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=33.2
Q ss_pred HHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCch
Q 023749 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (278)
Q Consensus 80 ~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~ 126 (278)
....+..+...-.+..++|+|++|+|||+++..++..+. ..|+..+.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 334444444334557899999999999999999998764 34665544
No 233
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.94 E-value=0.0054 Score=58.42 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH---hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~---~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (278)
....+++.|+.|||||++...|.+. |++.+|...+.+.. +|+... .+.....|...=...|..+.....++|
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrGS~fG~~~~----~qpsQ~~Fe~~l~~~l~~~~~~~~i~v 214 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHRGSSFGRLGG----PQPSQKDFENLLAEALLKLDPARPIVV 214 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhccccccCCCC----CCcchHHHHHHHHHHHHcCCCCCeEEE
Confidence 4456889999999999999999764 88999988776542 231111 111233443322222222222233344
Q ss_pred EeCC---c-eeechhHHHhhhCCcEEEEEcCHHHHHhh
Q 023749 169 CAGN---G-AVQSSANLALLRHGISLWIDVPPGMVARM 202 (278)
Q Consensus 169 ~~g~---g-~v~~~~~~~~L~~~~vV~L~a~~e~l~~R 202 (278)
-+.+ | +.+...-++.++.+.+|+|++|.+.+.+|
T Consensus 215 E~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~ 252 (345)
T PRK11784 215 EDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVER 252 (345)
T ss_pred EeccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence 3322 1 22223334566788999999999999999
No 234
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.93 E-value=0.00086 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=22.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCc
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RYY 120 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~ 120 (278)
+|+|+|.||+||||+.+.+.+.+ |++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 58999999999999999999998 655
No 235
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.92 E-value=0.0017 Score=59.79 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~ 121 (278)
...++|.|+||+|||++++.+|..++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45699999999999999999999998664
No 236
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.92 E-value=0.0016 Score=54.72 Aligned_cols=42 Identities=29% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 78 FAVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 78 ~~~~~~~~~~~~~~-~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
.+.++=++.+...| .|.+|+|.|.-||||||++|.+++.||.
T Consensus 9 ~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 9 EATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 34455567777777 7999999999999999999999999984
No 237
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.90 E-value=0.00093 Score=64.74 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++.|+|.|+||+|||++++.+|..++.+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 578899999999999999999999999888754
No 238
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.89 E-value=0.00094 Score=57.28 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=23.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
..++|+||+|+|||.+|+.||+.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999985
No 239
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00097 Score=62.68 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=32.4
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
+|...+|+|+||.|||||-+|+-||+.|+.||-=.|
T Consensus 94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 478899999999999999999999999999986444
No 240
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.86 E-value=0.0011 Score=62.55 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=31.7
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
..+.+.+ ++.|+|+|.+|+||||+++.|++.+|.+++.
T Consensus 155 ~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 155 REVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred HHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4444544 5689999999999999999999999998854
No 241
>CHL00176 ftsH cell division protein; Validated
Probab=96.85 E-value=0.0015 Score=66.93 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=29.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
++.|+|.|+||+|||++|+.+|..++.+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 56799999999999999999999999998764
No 242
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.85 E-value=0.0011 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=26.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
.+..++|.|++||||||+++.+. -|-..++.|++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 36789999999999999999987 34444555554
No 243
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.84 E-value=0.0036 Score=58.50 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
.++.|+|+||.|||||.+|-.||++ +..+|+.|..
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 3568999999999999999999999 4589998875
No 244
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.84 E-value=0.001 Score=62.40 Aligned_cols=37 Identities=32% Similarity=0.327 Sum_probs=32.8
Q ss_pred hhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 87 ~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
+...+.+..++|.|+||+|||++++.+|+.+|++++.
T Consensus 37 l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 37 LLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred HHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 3356789999999999999999999999999988753
No 245
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.001 Score=64.03 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
...+|-||||+||||+|+.+|...+..|.-....
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 4678899999999999999999999998765443
No 246
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0027 Score=60.52 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~~~~g 133 (278)
.++-|+|.||||+|||-+||++|...++.|+. .-+++++..|
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiG 227 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIG 227 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhc
Confidence 58889999999999999999999999999875 3556777666
No 247
>PRK06893 DNA replication initiation factor; Validated
Probab=96.81 E-value=0.015 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCc
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD 125 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D 125 (278)
.....++|.|++|+|||+++..++..+ ...|++.+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 455678999999999999999999875 45566653
No 248
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.80 E-value=0.0013 Score=61.73 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
....++|.|+||+||||+|+.+|+.+++.+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3568999999999999999999999998653
No 249
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0046 Score=57.95 Aligned_cols=36 Identities=28% Similarity=0.212 Sum_probs=33.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
..+.|+|+||-+||||-+|-.||+++|.++|+.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356899999999999999999999999999999985
No 250
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.76 E-value=0.0011 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.|+|+|++||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998754
No 251
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.76 E-value=0.002 Score=61.40 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.7
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceec
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD 123 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD 123 (278)
+.+.|+-|++.||||+|||.+|-.+|+.|| .||+.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence 678999999999999999999999999998 66653
No 252
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.018 Score=56.85 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=30.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
.|+=+...|+||||+|+.|.+-+||+++-.|++
T Consensus 376 ll~pia~igcgktt~ak~l~~lf~w~~vqnd~l 408 (758)
T COG5324 376 LLVPIATIGCGKTTVAKILEKLFGWPVVQNDNL 408 (758)
T ss_pred EEEEEEEeccCcccHHHHHHHHcCCcccccCCC
Confidence 666688999999999999999999999999987
No 253
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.73 E-value=0.0016 Score=63.95 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.++.++|.|+||+|||++|+.+|..++.+++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 56789999999999999999999999988764
No 254
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=96.72 E-value=0.005 Score=52.29 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCcEEEEEcCHHHHHhh---h--cCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHH
Q 023749 186 HGISLWIDVPPGMVARM---D--HSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV 260 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R---~--~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I 260 (278)
+++-|||+|+++++++| + ..+. ..+ ++.+.....+|+..=. .-.+.+-+.|+..-++||+++|++|++++|
T Consensus 80 A~~KifLtAs~e~RA~RR~~e~~~~g~-~~~-~e~v~~~i~~RD~~D~--~R~~aPL~~a~DAi~IDts~lti~evv~~i 155 (157)
T PF02224_consen 80 ADLKIFLTASPEVRARRRYKELQEKGK-KVS-YEEVLEDIKERDERDS--NREVAPLKKAEDAIVIDTSNLTIEEVVEKI 155 (157)
T ss_dssp -SEEEEEE--HHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHH--CTSSS-SS--TTSEEEETTTS-HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHhhChhhc--cCccCCCccCCCeEEEECCCCCHHHHHHHH
Confidence 56899999999999988 2 2231 112 3444444444443111 111222233444556779999999999998
Q ss_pred HH
Q 023749 261 KW 262 (278)
Q Consensus 261 ~~ 262 (278)
++
T Consensus 156 l~ 157 (157)
T PF02224_consen 156 LE 157 (157)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 255
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.71 E-value=0.0033 Score=62.81 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=26.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
.++.|+|.||||+|||++++.+|..++.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 46789999999999999999999998765
No 256
>PLN03025 replication factor C subunit; Provisional
Probab=96.70 E-value=0.0027 Score=59.37 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=32.1
Q ss_pred cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+.++......+...-...+++|.|+||+||||+++.+|+.+
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34555666666654445678999999999999999999987
No 257
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.70 E-value=0.0013 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC
Q 023749 96 VFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
|+|.|++|+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 258
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.69 E-value=0.0015 Score=58.29 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=27.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
++++|.||.|+|||.+|-.||+++|++++..|.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4678899999999999999999999999988875
No 259
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.69 E-value=0.0015 Score=51.95 Aligned_cols=25 Identities=32% Similarity=0.212 Sum_probs=20.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..++|.|++|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999977
No 260
>PF05729 NACHT: NACHT domain
Probab=96.69 E-value=0.0016 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+.++|.|.+|+||||+++.++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3689999999999999999998763
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0049 Score=62.31 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=30.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.+.-|+|+||||||||-+||++|.+-|+.|++.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 578899999999999999999999999999874
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.67 E-value=0.0022 Score=64.83 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=32.8
Q ss_pred HHHHHHHHhhh------hccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 78 FAVKKKAADIS------TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 78 ~~~~~~~~~~~------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.++++++.++. -.-+++.++|+||||+||||+|+.|++.+.
T Consensus 82 ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 82 EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 56677766665 223678999999999999999999999874
No 263
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.67 E-value=0.0018 Score=55.26 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.8
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.++...|+++.++|+|++|+||||+...|...
T Consensus 27 ~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 27 EELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667788999999999999999999999653
No 264
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0015 Score=58.32 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
+|-+++|+||+||||||+-|.|.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999999994
No 265
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.65 E-value=0.0015 Score=55.92 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=29.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhC-CceecCchHH
Q 023749 96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLV 128 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg-~~~iD~D~li 128 (278)
|+=++.+||||||+|..|+.-+| |-++-+|++-
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~ 35 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT 35 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence 45579999999999999999999 9999999973
No 266
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.64 E-value=0.0025 Score=61.81 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
....++|.|+||+||||+|+.+++.++..++..
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 445899999999999999999999998887654
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.63 E-value=0.0025 Score=56.30 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHhhhh-ccCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHH
Q 023749 80 VKKKAADIST-ELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLV 128 (278)
Q Consensus 80 ~~~~~~~~~~-~~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li 128 (278)
+.....++.. .-.+..++|+|++|+|||++++.++..+ .+.+++.....
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 3344444432 2346689999999999999999999876 56677765544
No 268
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.62 E-value=0.0024 Score=53.79 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
..|+-|+|+|++|+||||++..|.++ |+.++.-|.+
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v 47 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDRV 47 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEE
Confidence 45889999999999999999999774 8888865543
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.60 E-value=0.0071 Score=59.35 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l 127 (278)
.+.+|+++|++|+||||++..||..+ |+. ++++|.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 46789999999999999999999877 433 5677764
No 270
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0042 Score=61.97 Aligned_cols=39 Identities=28% Similarity=0.228 Sum_probs=32.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC-chHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-DSLVFEA 131 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~-D~li~~~ 131 (278)
++-|+|+||||+|||-+||++|-+-|.||+.+ ...+.++
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 45799999999999999999999999998753 3444443
No 271
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.54 E-value=0.004 Score=57.76 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=31.1
Q ss_pred cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
...+++....+...-....++|.|++|+||||+++.+++.+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555555433334799999999999999999999874
No 272
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.52 E-value=0.0027 Score=53.61 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=26.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL 127 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~l 127 (278)
.++++|++|+||||++..++..+ |. .+++.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 57899999999999999998875 43 35777754
No 273
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.50 E-value=0.0024 Score=56.61 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=26.6
Q ss_pred HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-++|.+++- ..+-.|++.|+||+|||++|+.+..-|
T Consensus 11 aKrAL~iAA-aG~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 11 AKRALEIAA-AGGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp HHHHHHHHH-HCC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred HHHHHHHHH-cCCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 456777764 357899999999999999999998743
No 274
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.50 E-value=0.0022 Score=51.70 Aligned_cols=26 Identities=42% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 58899999999999999999997543
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.50 E-value=0.011 Score=57.96 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV 128 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li 128 (278)
+..|+++|++||||||.+..||..+ |. -++++|...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 5689999999999999999999766 54 357888754
No 276
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0023 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|.++.|+|.+||||||+++.|+-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 599999999999999999999974
No 277
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.0079 Score=58.75 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----C--CceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g--~~~iD~D~li 128 (278)
+++.|+|+|++||||||++..||..+ | ..+++.|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999999754 3 3357777743
No 278
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.47 E-value=0.0035 Score=64.36 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
++.|+|.|+||+|||++++.++..++.+++..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45699999999999999999999999998754
No 279
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0026 Score=62.89 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~ 126 (278)
.++.|+|.||||+|||.+|+.+|..++++|+..+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~ 309 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence 35579999999999999999999999999886543
No 280
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.46 E-value=0.0023 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
++|+|+|++|||||||++.|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 6899999999999999999965
No 281
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.45 E-value=0.0054 Score=56.74 Aligned_cols=45 Identities=16% Similarity=0.041 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
..+++....+...-. +..+++.|++|+||||+++.+++.++..++
T Consensus 27 ~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 27 AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 556666666664332 335555899999999999999999876554
No 282
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.44 E-value=0.0026 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|-.|.|+||+||||||+-|.+|.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 588999999999999999999986
No 283
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.44 E-value=0.0025 Score=53.52 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=19.6
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..-.++.++|+|++|+|||++.+.+.+.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334578999999999999999998887663
No 284
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.44 E-value=0.0027 Score=65.96 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++.|+|.|+||+|||++|+.+|..++.+|+..
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 466799999999999999999999999998754
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.43 E-value=0.0028 Score=55.48 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=28.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~l 127 (278)
|++|+|+|+.|+||||.+..||..+. ..++.+|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 57899999999999999999998763 335666654
No 286
>PRK13695 putative NTPase; Provisional
Probab=96.41 E-value=0.0032 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
|.|+|+|.+|+||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987765
No 287
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.41 E-value=0.0029 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|.++.|+|++||||||+.+.|+.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999999974
No 288
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.41 E-value=0.003 Score=58.57 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=26.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~ 121 (278)
--+++|.||||-||||+|..+|..+|..+
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 45899999999999999999999999775
No 289
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.40 E-value=0.0028 Score=55.43 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999864
No 290
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.39 E-value=0.0029 Score=55.34 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999998543
No 291
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.38 E-value=0.003 Score=55.02 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999999864
No 292
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.38 E-value=0.003 Score=65.70 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++.|+|.|+||+|||++++.+|..++.+++..
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 467899999999999999999999999887643
No 293
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.38 E-value=0.003 Score=55.11 Aligned_cols=25 Identities=48% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999999753
No 294
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0031 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999853
No 295
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.36 E-value=0.0031 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999999854
No 296
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0032 Score=55.84 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998543
No 297
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.33 E-value=0.0037 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+..++|+|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44789999999999999999998875
No 298
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0033 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 299
>PF13245 AAA_19: Part of AAA domain
Probab=96.31 E-value=0.0049 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.3
Q ss_pred CcEEEEEccCCCcHH-HHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKT-HLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKS-TlAk~LAe~L 117 (278)
....+|.|+|||||| |++..++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 666777999999999 5555555443
No 300
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.30 E-value=0.0031 Score=64.70 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=31.4
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
+-..-++.+|+|+||.||||+|..+|+.-||.+++.
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 334566888999999999999999999999999875
No 301
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.30 E-value=0.0034 Score=61.70 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=25.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
.++.|+|.|+||+|||++|+.||..++.
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6889999999999999999999998853
No 302
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.30 E-value=0.0038 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..|+|+|++||||||+.+.|...+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999998755
No 303
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.30 E-value=0.0036 Score=54.50 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 304
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0035 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999853
No 305
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.29 E-value=0.0033 Score=55.10 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999754
No 306
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0035 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+.-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999853
No 307
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.28 E-value=0.0033 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 6889999999999999999999853
No 308
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.28 E-value=0.0033 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999999753
No 309
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.28 E-value=0.0037 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999998754
No 310
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.27 E-value=0.0038 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999853
No 311
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.27 E-value=0.0038 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999998643
No 312
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.26 E-value=0.0037 Score=55.60 Aligned_cols=25 Identities=24% Similarity=0.273 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 313
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.25 E-value=0.0039 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999754
No 314
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.25 E-value=0.007 Score=56.97 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
.|.+|.|+|++|+||||++..||..+ | ..+++.|.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 47799999999999999999999876 3 23466665
No 315
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.25 E-value=0.0039 Score=54.61 Aligned_cols=25 Identities=40% Similarity=0.337 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999999853
No 316
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0039 Score=55.17 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998644
No 317
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.24 E-value=0.075 Score=47.07 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.2
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe 115 (278)
.+.++|.|.+||||+++.+-.
T Consensus 3 LlaliGiPAaGKSs~c~~ilg 23 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILG 23 (291)
T ss_pred eeeeecCcccchhHHHHHHHH
Confidence 478899999999999998753
No 318
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.24 E-value=0.0039 Score=54.14 Aligned_cols=25 Identities=44% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999999763
No 319
>PRK09183 transposase/IS protein; Provisional
Probab=96.24 E-value=0.0052 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..++|+|++|+|||+++..|+..+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999997553
No 320
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0041 Score=52.75 Aligned_cols=25 Identities=40% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999753
No 321
>PLN02796 D-glycerate 3-kinase
Probab=96.23 E-value=0.0044 Score=58.95 Aligned_cols=37 Identities=14% Similarity=-0.053 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC-----ceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-----~~iD~D~li 128 (278)
.+..|.|+|++||||||+++.|...+.. ..+..|++.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4557899999999999999999988742 345556553
No 322
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.016 Score=58.72 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=30.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.-++-+.++||||+|||.+||++|-..+.||++.
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i 214 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 214 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceec
Confidence 3477899999999999999999999999998763
No 323
>PRK04296 thymidine kinase; Provisional
Probab=96.20 E-value=0.0046 Score=53.62 Aligned_cols=26 Identities=19% Similarity=-0.028 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|+.++++|+||+||||++..++.++
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999888876
No 324
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.0045 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999999999974
No 325
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.20 E-value=0.004 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+++|+|++|+||||+++.++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 326
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.20 E-value=0.0043 Score=55.14 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 327
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0044 Score=54.44 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999853
No 328
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.19 E-value=0.0052 Score=52.97 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHh
Q 023749 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAA 132 (278)
Q Consensus 83 ~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~ 132 (278)
++.+|.. .+..++|.|++|+|||.+|..++.++ | ..|++..+++.+..
T Consensus 39 ~~~~~~~--~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 39 AALEFIE--NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp HHH-S-S--C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred hcCCCcc--cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 4445554 57899999999999999999998755 3 33566666665543
No 329
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.19 E-value=0.0052 Score=53.81 Aligned_cols=38 Identities=24% Similarity=0.216 Sum_probs=29.9
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
+-..|..+.|.|+|||||||+|..++... | ..|++++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 45578999999999999999999998765 2 23666654
No 330
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0043 Score=64.82 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=26.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++|+||+|+|||++|+.||+.++.+++..
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i 519 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence 689999999999999999999999887543
No 331
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0044 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998643
No 332
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.18 E-value=0.0043 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999999853
No 333
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.18 E-value=0.0043 Score=55.11 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999864
No 334
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.17 E-value=0.0014 Score=54.49 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=31.4
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCCC--hHHHHHHHH-HHhhhccc---c-CcEEEec
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFPESE--VLPQLFALY-KEMRDGYA---T-ADVTVSL 236 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp~~~--~~~~l~~~~-~er~~~Y~---~-AD~vId~ 236 (278)
++++|||++|++++.+| .+|||+.+. ..+.++.+. +....++. . .-++||.
T Consensus 68 pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~ 126 (146)
T PF01712_consen 68 PDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDA 126 (146)
T ss_dssp -SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEEC
Confidence 57899999999999999 899998542 235555544 33334333 2 3357774
No 335
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0045 Score=54.89 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999999864
No 336
>PRK12377 putative replication protein; Provisional
Probab=96.16 E-value=0.0097 Score=54.12 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhccC--CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 79 AVKKKAADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 79 ~~~~~~~~~~~~~~--~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.++..+..++..+. ...++|.|++|+|||+++..++..+
T Consensus 85 ~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 85 YALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35555666664432 3689999999999999999999887
No 337
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0046 Score=53.40 Aligned_cols=24 Identities=42% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|.++.|+|++||||||+.+.|+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999999984
No 338
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.15 E-value=0.0045 Score=54.67 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998643
No 339
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.15 E-value=0.0055 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.337 Sum_probs=21.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
++|.++|+.+|||||+++.|...|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998766
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.14 E-value=0.0048 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 688999999999999999999975
No 341
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0048 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 342
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.13 E-value=0.0047 Score=54.53 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999854
No 343
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.13 E-value=0.005 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999999854
No 344
>PRK08181 transposase; Validated
Probab=96.12 E-value=0.012 Score=54.14 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=32.2
Q ss_pred hhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHH
Q 023749 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFE 130 (278)
Q Consensus 86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~ 130 (278)
+|.. .+..++|+|++|+|||.++..++..+ | ..|++..+++.+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 5654 57789999999999999999998644 4 335566555544
No 345
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0049 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999998643
No 346
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.12 E-value=0.0049 Score=54.29 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+.-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999999853
No 347
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.12 E-value=0.0052 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999753
No 348
>PRK06526 transposase; Provisional
Probab=96.11 E-value=0.0073 Score=55.06 Aligned_cols=31 Identities=29% Similarity=0.211 Sum_probs=25.4
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+|.. .+..++|+|++|+|||+++..|+..+
T Consensus 92 ~~fi~--~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 92 LDFVT--GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred Cchhh--cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 44443 46789999999999999999998754
No 349
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.11 E-value=0.0071 Score=54.71 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHhhhhc--cCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 82 KKAADISTE--LKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 82 ~~~~~~~~~--~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
++..+.+.. -...+|+|.|++|+||||+|+.+++.
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 344444433 35678999999999999999999977
No 350
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.11 E-value=0.005 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999998643
No 351
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.11 E-value=0.0051 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999997643
No 352
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.005 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|-.+.|+|++||||||+-+.+|-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999999985
No 353
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.005 Score=55.70 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999864
No 354
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.09 E-value=0.0052 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+-..++-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999999875
No 355
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.09 E-value=0.0053 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999999853
No 356
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0047 Score=53.83 Aligned_cols=23 Identities=43% Similarity=0.375 Sum_probs=21.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
| ++.|+|++||||||+.+.|+..
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 7 8999999999999999999853
No 357
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.09 E-value=0.0054 Score=53.47 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.|+|+|++||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999998887664
No 358
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.08 E-value=0.0089 Score=62.20 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 83 ~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..+++..-...+++|+|+||+|||++++.||+++
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45555544566789999999999999999999987
No 359
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.08 E-value=0.0055 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999997543
No 360
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0052 Score=55.12 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999864
No 361
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.08 E-value=0.0053 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999999853
No 362
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.0054 Score=60.77 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
..++|.|+||+||||+|+.+|+.++.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999999875
No 363
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.08 E-value=0.0052 Score=54.31 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998643
No 364
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.08 E-value=0.0061 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.039 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
....|.|+|++||||||+.+.|...|.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 456889999999999999999997774
No 365
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.07 E-value=0.0051 Score=54.30 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 68899999999999999999998644
No 366
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.027 Score=58.42 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
+..-|+|.||||+|||-+||++|.++.+.|++.
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 356699999999999999999999999999874
No 367
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.06 E-value=0.0055 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999753
No 368
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.06 E-value=0.0052 Score=68.93 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=33.6
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVF 129 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~ 129 (278)
+.-.++-|+|+||||+|||.+||+||...++|++. ..+++.
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 33457889999999999999999999999999865 344443
No 369
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0054 Score=54.91 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999998653
No 370
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.05 E-value=0.0063 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|+++|.+||||||+.+.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 371
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0055 Score=54.58 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998643
No 372
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0056 Score=55.36 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..+.|+|++||||||+.+.|+..+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999998643
No 373
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.04 E-value=0.0055 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999998643
No 374
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.04 E-value=0.0061 Score=51.67 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999999864
No 375
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.03 E-value=0.0058 Score=52.27 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998643
No 376
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.03 E-value=0.0057 Score=54.43 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998643
No 377
>PRK10908 cell division protein FtsE; Provisional
Probab=96.03 E-value=0.0058 Score=53.72 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999753
No 378
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.03 E-value=0.0091 Score=54.15 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=32.9
Q ss_pred cHHHHHHHHhhhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 77 SFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 77 ~~~~~~~~~~~~~~~--~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
...+.+...++...+ .+..|+++|++||||||+.+.|.+.+.
T Consensus 109 ~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 109 SGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp THHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred chhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 344555666666655 588999999999999999999988763
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=96.02 E-value=0.0098 Score=56.46 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l 127 (278)
.+..|+|+|++|+||||++..||..+ |.. ++++|.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 36789999999999999888887655 433 4666643
No 380
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.02 E-value=0.0057 Score=54.88 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998644
No 381
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.0059 Score=55.09 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999998654
No 382
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.01 E-value=0.006 Score=54.21 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998543
No 383
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.006 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 68899999999999999999998644
No 384
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.01 E-value=0.0063 Score=51.95 Aligned_cols=25 Identities=40% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999999753
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.00 E-value=0.0064 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999975
No 386
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.00 E-value=0.0049 Score=56.09 Aligned_cols=38 Identities=26% Similarity=0.209 Sum_probs=31.0
Q ss_pred HHHhhh-hccCCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 83 KAADIS-TELKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 83 ~~~~~~-~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
|+.+.. +--.|.++.|+|++|+||||+++.++..+...
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 444444 66689999999999999999999999876543
No 387
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.00 E-value=0.0062 Score=52.66 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999753
No 388
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.00 E-value=0.0046 Score=55.81 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.1
Q ss_pred EEccCCCcHHHHHHHHHHHhCC
Q 023749 98 LVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 98 L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
++||+||||||+++.+++-+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999998743
No 389
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0059 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999764
No 390
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.99 E-value=0.0064 Score=52.74 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999753
No 391
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.99 E-value=0.012 Score=54.03 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=30.7
Q ss_pred cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
...+++....+...-....++|+|++|+||||+++.+++.+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34455555555544344568999999999999999999987
No 392
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.99 E-value=0.0052 Score=54.95 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=27.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~ 129 (278)
+..++|.|.||+||||+|+.|+. ...+++.|.-..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~ 46 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSK 46 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccch
Confidence 46799999999999999999963 355666666433
No 393
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.99 E-value=0.006 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999864
No 394
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0067 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999999997643
No 395
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.98 E-value=0.0061 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999998644
No 396
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0061 Score=54.69 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999999864
No 397
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.98 E-value=0.0089 Score=52.29 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=28.1
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+++..=..++|.|+|++||||||+.+.+.+.++
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555555678999999999999999999988765
No 398
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.0063 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999998643
No 399
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.97 E-value=0.0064 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999999754
No 400
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.97 E-value=0.0084 Score=44.24 Aligned_cols=29 Identities=28% Similarity=0.192 Sum_probs=23.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCceec
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFD 123 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD 123 (278)
.|++.|..|+||||++..|+..+ |++.+-
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~ 32 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLL 32 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37888999999999999999887 555433
No 401
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.97 E-value=0.0064 Score=53.34 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999753
No 402
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0058 Score=54.82 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999864
No 403
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0063 Score=54.57 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999863
No 404
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0065 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999754
No 405
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0063 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999999953
No 406
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.96 E-value=0.0063 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 407
>PRK13768 GTPase; Provisional
Probab=95.96 E-value=0.0079 Score=54.63 Aligned_cols=34 Identities=35% Similarity=0.371 Sum_probs=26.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~ 126 (278)
.+.|++.|++|+||||++..++..+ |.+ ++|.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4689999999999999999888766 333 556654
No 408
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.96 E-value=0.0078 Score=52.28 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=30.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
+-.+|..+.|+|+||||||+++..++... | ..|+|++.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44578999999999999999999988643 3 45677764
No 409
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.96 E-value=0.0065 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999999854
No 410
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.95 E-value=0.0066 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.019 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.+.-
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 588999999999999999998853
No 411
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0057 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 68899999999999999999998643
No 412
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.95 E-value=0.0066 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999999854
No 413
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0066 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999998644
No 414
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.007 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
..++|+|++|+||||+|+.+|+.++.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35789999999999999999999874
No 415
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.95 E-value=0.0068 Score=52.92 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999764
No 416
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.94 E-value=0.0066 Score=53.85 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999998643
No 417
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0065 Score=54.79 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999999864
No 418
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.94 E-value=0.0072 Score=55.61 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l 127 (278)
.++.|+|+|++|+||||++..||..+ |.. ++++|.+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35789999999999999999998776 433 4777753
No 419
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.94 E-value=0.0068 Score=57.97 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=26.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
..|..|.|+|.+||||||+++.|.++|.-
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~ 31 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSE 31 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998863
No 420
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.93 E-value=0.0067 Score=54.43 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999999998754
No 421
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.93 E-value=0.0067 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998643
No 422
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.0069 Score=54.29 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 6889999999999999999999864
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.92 E-value=0.0076 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=22.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
.++|+|++|||||++|..++...+-+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 37899999999999999999876633
No 424
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.92 E-value=0.0071 Score=52.49 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.++..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 6999999999999999999999753
No 425
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.0065 Score=57.68 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|-.++|.||+||||||+-+.+|-
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 478899999999999999999984
No 426
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.92 E-value=0.0071 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999999853
No 427
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0062 Score=55.24 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999999854
No 428
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0069 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999998643
No 429
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.91 E-value=0.0071 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 68999999999999999999998643
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.90 E-value=0.051 Score=52.70 Aligned_cols=38 Identities=21% Similarity=0.068 Sum_probs=30.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li 128 (278)
.++++|.|+||-|+||||.-..||.++. ..++.+|.+.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR 245 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR 245 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence 3689999999999999987777777664 4467888764
No 431
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.90 E-value=0.0087 Score=55.70 Aligned_cols=34 Identities=21% Similarity=-0.074 Sum_probs=27.7
Q ss_pred HHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 84 ~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.+...+-.+..|.|+|.|||||||+.+.+...+
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444455678899999999999999998888775
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.90 E-value=0.0072 Score=49.97 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 6889999999999999999999753
No 433
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0071 Score=54.92 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999863
No 434
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.89 E-value=0.0078 Score=55.55 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----C-C--ceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R-Y--YYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g-~--~~iD~D~l 127 (278)
.+.+|+|+|+.|+||||++..||..+ | . .+++.|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 46689999999999999999998765 3 2 25677763
No 435
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.0071 Score=59.94 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+..++|+|++|+||||+|+.||+.++..
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4458999999999999999999999864
No 436
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.88 E-value=0.25 Score=43.86 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhhhhccC--CcEEEEEccCCCcHHHHHHHHHHHh-----C--CceecCchHHHH
Q 023749 76 PSFAVKKKAADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFE 130 (278)
Q Consensus 76 ~~~~~~~~~~~~~~~~~--~~~I~L~G~~GSGKSTlAk~LAe~L-----g--~~~iD~D~li~~ 130 (278)
........+..++.... ...++|.|++|+|||.+.+.++.++ + +.+++.+++..+
T Consensus 15 ~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 15 SNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp TTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 34445555666665432 2468999999999999999998754 2 346666665543
No 437
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0075 Score=58.87 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=30.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
|...+|+|.||.|||||-+|+-||+-|+.||.=
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaI 256 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAI 256 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence 567899999999999999999999999999753
No 438
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.88 E-value=0.0075 Score=53.12 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999998643
No 439
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.88 E-value=0.0067 Score=60.18 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=27.2
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
-.+.+..|+|.|+||+|||++|+.|++..+
T Consensus 35 aalag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 457899999999999999999999999765
No 440
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.87 E-value=0.0075 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998643
No 441
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.0074 Score=53.42 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999998643
No 442
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.87 E-value=0.0071 Score=55.05 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998643
No 443
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.87 E-value=0.0099 Score=62.99 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=31.2
Q ss_pred HHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 80 ~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.-++..+++..-...+++|+|+||+|||++++.||..+
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 34556666655566789999999999999999999987
No 444
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.86 E-value=0.0073 Score=54.06 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|.++.|+|++||||||+.+.|+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999999975
No 445
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.86 E-value=0.0078 Score=52.33 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999753
No 446
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.86 E-value=0.0067 Score=60.30 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+++.|..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999999964
No 447
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0065 Score=57.97 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g 133 (278)
.++.|++.||||+|||-+|+++|++.|..|+.. ..+..+.+|
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 366799999999999999999999999998764 334444443
No 448
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0077 Score=53.92 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999864
No 449
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.0078 Score=53.98 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999864
No 450
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.84 E-value=0.0079 Score=52.31 Aligned_cols=25 Identities=40% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999764
No 451
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0077 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999864
No 452
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.0075 Score=54.97 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999864
No 453
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0076 Score=55.44 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999998643
No 454
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0072 Score=55.00 Aligned_cols=26 Identities=31% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999999998643
No 455
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.0077 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999999985
No 456
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.82 E-value=0.008 Score=53.61 Aligned_cols=25 Identities=40% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 457
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.81 E-value=0.0082 Score=58.65 Aligned_cols=37 Identities=16% Similarity=-0.022 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li 128 (278)
.+.+|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 457888999999999999999987663 3345666654
No 458
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.81 E-value=0.01 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..|+++|++||||||+.+.|...+
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 459
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.81 E-value=0.007 Score=59.36 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=28.6
Q ss_pred cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..|++|-.+=+ .-|++.|+||+||||+|++||+-+
T Consensus 252 ~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 252 SDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred CHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHH
Confidence 466777655532 358999999999999999999976
No 460
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0079 Score=54.80 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999999864
No 461
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0082 Score=54.59 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999998754
No 462
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0082 Score=53.72 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999999998643
No 463
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.81 E-value=0.0081 Score=54.15 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998654
No 464
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0081 Score=53.85 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 5899999999999999999999853
No 465
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.008 Score=54.76 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999998643
No 466
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.80 E-value=0.0074 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 689999999999999999999985
No 467
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.80 E-value=0.0084 Score=59.93 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=25.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+..++|+|++|+||||+|+.+|+.++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4578999999999999999999999864
No 468
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.80 E-value=0.085 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
..++|+|++|+||||+|+.|++.|++
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35788999999999999999999987
No 469
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.79 E-value=0.0081 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999998643
No 470
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.79 E-value=0.0083 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.|+|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.78 E-value=0.0084 Score=54.90 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----CCceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g~~~iD~D~l 127 (278)
+|..+.|+||.||||||+-|.|+.-+ |-.++|.-++
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 58999999999999999999999855 4456665443
No 472
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.78 E-value=0.0091 Score=62.10 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~ 126 (278)
....++|.|+||+||||+|+.+++.++..++..+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 34578999999999999999999998877765543
No 473
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0086 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999998643
No 474
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.77 E-value=0.0085 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.347 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999997643
No 475
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.77 E-value=0.0086 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999854
No 476
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.77 E-value=0.0096 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=22.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+..|.|+|++||||||+.+.+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35799999999999999999988753
No 477
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.76 E-value=0.0086 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.200 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998644
No 478
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.76 E-value=0.0089 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999854
No 479
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0082 Score=54.84 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998643
No 480
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.76 E-value=0.016 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.+..++|.|++|+|||++++.+++.+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999876
No 481
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.0087 Score=53.57 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999999863
No 482
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.08 Score=45.46 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=28.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEA 131 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~ 131 (278)
++.-++.|+.||||||+-..+-..+ +..+++.|.+..+.
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 3456777999999999876543333 57789999887554
No 483
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.75 E-value=0.0079 Score=53.64 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999999864
No 484
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.75 E-value=0.0088 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999999864
No 485
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.74 E-value=0.009 Score=54.32 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999999998754
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.0097 Score=57.29 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----C---CceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g---~~~iD~D~l 127 (278)
.+.+|+|+|++|+||||++..||..+ | .-++..|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 47899999999999999999999753 3 235666665
No 487
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.74 E-value=0.0087 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999998654
No 488
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.74 E-value=0.0091 Score=53.56 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999998754
No 489
>PRK06921 hypothetical protein; Provisional
Probab=95.74 E-value=0.015 Score=53.37 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhcc------CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 79 AVKKKAADISTEL------KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 79 ~~~~~~~~~~~~~------~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.++..+.++.... .+..++|.|++|+|||.++..++..+
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3455566666533 46789999999999999999998865
No 490
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.74 E-value=0.0087 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999853
No 491
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.0092 Score=53.52 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999864
No 492
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.009 Score=53.94 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999999853
No 493
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.73 E-value=0.0085 Score=62.35 Aligned_cols=34 Identities=32% Similarity=0.306 Sum_probs=27.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCcee--cCchHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLV 128 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~i--D~D~li 128 (278)
.++|+||+|+|||++|+.||+.++.+++ |+..+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 4789999999999999999999987654 444443
No 494
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.009 Score=54.47 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+..+
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999998754
No 495
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.024 Score=50.02 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..+|.|..++||||+-+.++.+..
T Consensus 24 ~~~iEGNIa~GKsTfl~~~~~~t~ 47 (244)
T KOG4235|consen 24 LSIIEGNIAVGKSTFLNFFLNKTY 47 (244)
T ss_pred eEEEecccccchHHHHHHHHhccC
Confidence 334889999999999998877654
No 496
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0082 Score=53.30 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 6889999999999999999999753
No 497
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.72 E-value=0.0098 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|+|+|.+|+||||+-+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999974
No 498
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.72 E-value=0.013 Score=47.03 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=25.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749 96 VFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~ 126 (278)
|++.|.+|+||||++..|+..+ |.+ ++|+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 8899999999999999998876 544 467764
No 499
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.71 E-value=0.0097 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999999753
No 500
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0095 Score=54.08 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|.++.|+|++||||||+.+.|+.-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999999853
Done!