Query 023749
Match_columns 278
No_of_seqs 225 out of 1561
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:08:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 100.0 3.9E-30 1.3E-34 231.5 15.6 192 76-268 31-238 (250)
2 3vaa_A Shikimate kinase, SK; s 99.9 1.3E-26 4.6E-31 199.2 17.7 164 92-268 24-197 (199)
3 3trf_A Shikimate kinase, SK; a 99.9 1.6E-26 5.5E-31 195.1 17.6 166 93-271 5-179 (185)
4 2iyv_A Shikimate kinase, SK; t 99.9 8.4E-25 2.9E-29 184.7 17.1 164 93-269 2-171 (184)
5 1via_A Shikimate kinase; struc 99.9 2.2E-24 7.7E-29 181.1 16.9 157 94-267 5-167 (175)
6 1zuh_A Shikimate kinase; alpha 99.9 5.1E-24 1.7E-28 177.6 14.9 152 94-264 8-167 (168)
7 1kag_A SKI, shikimate kinase I 99.9 1.3E-23 4.4E-28 175.2 15.3 162 92-266 3-172 (173)
8 1e6c_A Shikimate kinase; phosp 99.9 2.4E-23 8.3E-28 173.3 16.1 160 93-266 2-170 (173)
9 2pt5_A Shikimate kinase, SK; a 99.9 4.9E-23 1.7E-27 170.9 15.7 159 94-266 1-163 (168)
10 3fdi_A Uncharacterized protein 99.8 3.4E-20 1.2E-24 161.0 12.1 158 92-267 5-199 (201)
11 3hdt_A Putative kinase; struct 99.8 7.1E-20 2.4E-24 161.9 10.6 157 93-267 14-219 (223)
12 1knq_A Gluconate kinase; ALFA/ 99.8 2.6E-17 9E-22 137.4 18.4 154 91-266 6-173 (175)
13 3lw7_A Adenylate kinase relate 99.8 1.5E-17 5E-22 136.7 15.1 156 94-268 2-178 (179)
14 4eun_A Thermoresistant glucoki 99.7 9.1E-17 3.1E-21 137.8 18.5 156 92-268 28-195 (200)
15 1qhx_A CPT, protein (chloramph 99.7 1.6E-17 5.5E-22 138.7 11.7 155 92-265 2-177 (178)
16 1y63_A LMAJ004144AAA protein; 99.7 2.1E-18 7.1E-23 146.4 5.0 154 91-269 8-180 (184)
17 3kb2_A SPBC2 prophage-derived 99.7 1.8E-16 6.2E-21 130.8 16.1 146 94-268 2-168 (173)
18 1qf9_A UMP/CMP kinase, protein 99.7 5.5E-17 1.9E-21 136.2 12.1 159 92-266 5-191 (194)
19 2cdn_A Adenylate kinase; phosp 99.7 8.6E-17 2.9E-21 137.5 12.8 158 90-265 17-200 (201)
20 2c95_A Adenylate kinase 1; tra 99.7 5.3E-17 1.8E-21 137.1 11.3 161 92-268 8-195 (196)
21 3cm0_A Adenylate kinase; ATP-b 99.7 1.2E-16 4E-21 134.3 12.8 156 92-265 3-185 (186)
22 3iij_A Coilin-interacting nucl 99.7 1.9E-17 6.5E-22 139.1 7.7 149 92-268 10-175 (180)
23 2bwj_A Adenylate kinase 5; pho 99.7 1.4E-16 4.8E-21 134.9 12.6 160 92-267 11-197 (199)
24 2vli_A Antibiotic resistance p 99.7 1.7E-16 5.8E-21 132.8 11.4 153 92-269 4-174 (183)
25 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 3E-16 1E-20 140.5 13.5 156 92-271 3-178 (260)
26 2h92_A Cytidylate kinase; ross 99.7 1.9E-17 6.5E-22 143.1 4.5 155 92-266 2-217 (219)
27 3t61_A Gluconokinase; PSI-biol 99.7 5.1E-16 1.8E-20 132.8 13.4 148 93-266 18-179 (202)
28 3be4_A Adenylate kinase; malar 99.7 3.5E-16 1.2E-20 135.9 11.8 109 90-202 2-128 (217)
29 1tev_A UMP-CMP kinase; ploop, 99.7 9.8E-16 3.4E-20 128.7 14.2 159 92-266 2-194 (196)
30 1zak_A Adenylate kinase; ATP:A 99.7 7.8E-16 2.7E-20 133.7 13.7 159 92-268 4-212 (222)
31 2if2_A Dephospho-COA kinase; a 99.7 5.2E-17 1.8E-21 138.9 5.7 160 94-274 2-199 (204)
32 2pbr_A DTMP kinase, thymidylat 99.6 2.2E-15 7.6E-20 126.6 14.0 160 94-269 1-194 (195)
33 1kht_A Adenylate kinase; phosp 99.6 4.7E-15 1.6E-19 124.3 15.6 158 92-264 2-191 (192)
34 2rhm_A Putative kinase; P-loop 99.6 2.7E-15 9.1E-20 126.3 13.8 154 92-265 4-187 (193)
35 1zd8_A GTP:AMP phosphotransfer 99.6 1.4E-15 4.7E-20 132.7 11.6 110 92-202 6-124 (227)
36 1aky_A Adenylate kinase; ATP:A 99.6 2.7E-15 9.4E-20 130.0 13.2 107 92-202 3-128 (220)
37 4e22_A Cytidylate kinase; P-lo 99.6 1.3E-15 4.4E-20 135.9 11.0 39 92-130 26-64 (252)
38 2grj_A Dephospho-COA kinase; T 99.6 5.9E-15 2E-19 127.3 13.0 147 93-267 12-187 (192)
39 1ak2_A Adenylate kinase isoenz 99.6 1.1E-14 3.7E-19 127.8 14.7 110 92-205 15-143 (233)
40 1jjv_A Dephospho-COA kinase; P 99.6 8.4E-15 2.9E-19 125.4 13.0 151 94-266 3-196 (206)
41 1ukz_A Uridylate kinase; trans 99.6 1.5E-14 5E-19 123.4 14.0 161 92-267 14-202 (203)
42 1q3t_A Cytidylate kinase; nucl 99.6 8.3E-16 2.8E-20 135.2 6.2 156 91-267 14-235 (236)
43 3ake_A Cytidylate kinase; CMP 99.6 2.9E-14 1E-18 121.3 15.6 148 94-265 3-207 (208)
44 4i1u_A Dephospho-COA kinase; s 99.6 4.8E-15 1.6E-19 129.9 10.6 157 94-267 10-202 (210)
45 1uf9_A TT1252 protein; P-loop, 99.6 1.8E-15 6.3E-20 128.3 6.7 156 92-271 7-198 (203)
46 2jaq_A Deoxyguanosine kinase; 99.6 2E-14 6.7E-19 121.7 12.8 157 94-267 1-201 (205)
47 3cr8_A Sulfate adenylyltranfer 99.6 7.8E-15 2.7E-19 145.2 11.2 160 92-267 368-540 (552)
48 1vht_A Dephospho-COA kinase; s 99.6 1.9E-14 6.5E-19 124.4 11.9 154 92-267 3-195 (218)
49 1nks_A Adenylate kinase; therm 99.6 1.1E-13 3.7E-18 115.9 15.6 157 94-264 2-193 (194)
50 1ly1_A Polynucleotide kinase; 99.5 2.7E-14 9.3E-19 118.5 9.7 157 93-267 2-173 (181)
51 3fb4_A Adenylate kinase; psych 99.5 1.6E-13 5.4E-18 118.1 14.8 108 94-205 1-127 (216)
52 2xb4_A Adenylate kinase; ATP-b 99.5 7.2E-14 2.5E-18 122.0 12.0 109 94-205 1-126 (223)
53 1e4v_A Adenylate kinase; trans 99.5 2.5E-13 8.4E-18 117.3 15.1 105 94-202 1-119 (214)
54 3dl0_A Adenylate kinase; phosp 99.5 2.4E-13 8.3E-18 117.1 15.0 108 94-205 1-127 (216)
55 2z0h_A DTMP kinase, thymidylat 99.5 1E-13 3.6E-18 116.8 12.4 162 94-269 1-194 (197)
56 3umf_A Adenylate kinase; rossm 99.5 1.2E-13 4.1E-18 121.5 13.0 158 92-266 28-213 (217)
57 1uj2_A Uridine-cytidine kinase 99.5 1.3E-14 4.4E-19 128.9 6.8 160 92-269 21-236 (252)
58 3sr0_A Adenylate kinase; phosp 99.5 2.7E-13 9.1E-18 118.2 14.6 106 94-202 1-120 (206)
59 3r20_A Cytidylate kinase; stru 99.5 2.8E-13 9.5E-18 120.4 14.5 158 92-269 8-230 (233)
60 1nn5_A Similar to deoxythymidy 99.5 7.3E-14 2.5E-18 119.4 10.4 164 92-269 8-203 (215)
61 1cke_A CK, MSSA, protein (cyti 99.5 8E-15 2.7E-19 126.8 4.4 38 93-130 5-42 (227)
62 1m7g_A Adenylylsulfate kinase; 99.5 1.2E-13 4.2E-18 119.1 11.6 153 91-266 23-202 (211)
63 2f6r_A COA synthase, bifunctio 99.5 2E-13 7E-18 123.7 12.9 153 93-266 75-268 (281)
64 2yvu_A Probable adenylyl-sulfa 99.5 1.4E-14 4.7E-19 122.3 4.3 156 92-268 12-185 (186)
65 2v54_A DTMP kinase, thymidylat 99.5 1.8E-13 6.2E-18 116.2 10.9 159 92-268 3-192 (204)
66 1x6v_B Bifunctional 3'-phospho 99.5 1E-13 3.4E-18 138.9 10.4 156 91-268 50-224 (630)
67 3tlx_A Adenylate kinase 2; str 99.5 5.8E-13 2E-17 118.0 14.3 118 82-202 17-152 (243)
68 2pez_A Bifunctional 3'-phospho 99.5 9.3E-14 3.2E-18 116.5 8.5 153 91-266 3-175 (179)
69 2plr_A DTMP kinase, probable t 99.4 6.5E-12 2.2E-16 106.7 17.9 29 92-120 3-31 (213)
70 3uie_A Adenylyl-sulfate kinase 99.4 3.6E-13 1.2E-17 115.2 9.4 150 91-267 23-195 (200)
71 1m8p_A Sulfate adenylyltransfe 99.4 6.7E-14 2.3E-18 139.1 5.4 159 92-266 395-566 (573)
72 2wwf_A Thymidilate kinase, put 99.4 1.3E-12 4.3E-17 111.6 12.6 157 91-267 8-200 (212)
73 3gmt_A Adenylate kinase; ssgci 99.4 1.2E-12 4E-17 116.3 10.7 106 93-202 8-127 (230)
74 2qor_A Guanylate kinase; phosp 99.4 3.1E-12 1.1E-16 109.7 11.7 155 90-269 9-199 (204)
75 4eaq_A DTMP kinase, thymidylat 99.4 6.4E-12 2.2E-16 110.7 13.1 162 91-268 24-226 (229)
76 2bdt_A BH3686; alpha-beta prot 99.3 7.4E-12 2.5E-16 105.5 10.9 151 93-261 2-168 (189)
77 2qt1_A Nicotinamide riboside k 99.3 7.5E-12 2.6E-16 107.1 11.1 163 88-267 15-206 (207)
78 2gks_A Bifunctional SAT/APS ki 99.3 2.2E-12 7.4E-17 127.5 8.6 157 92-266 371-540 (546)
79 3a8t_A Adenylate isopentenyltr 99.3 2E-12 6.8E-17 120.7 4.4 113 92-205 39-194 (339)
80 1zp6_A Hypothetical protein AT 99.3 2.1E-11 7.1E-16 102.5 9.7 159 91-267 7-176 (191)
81 4edh_A DTMP kinase, thymidylat 99.2 5.8E-10 2E-14 97.4 17.7 161 91-268 4-208 (213)
82 2bbw_A Adenylate kinase 4, AK4 99.2 1E-10 3.5E-15 103.0 12.6 107 92-202 26-144 (246)
83 4hlc_A DTMP kinase, thymidylat 99.2 2.4E-10 8.1E-15 99.2 13.6 161 92-269 1-203 (205)
84 1p5z_B DCK, deoxycytidine kina 99.2 9.6E-11 3.3E-15 104.3 11.4 32 92-123 23-55 (263)
85 3lv8_A DTMP kinase, thymidylat 99.2 6.5E-10 2.2E-14 98.8 16.3 164 91-269 25-231 (236)
86 1ltq_A Polynucleotide kinase; 99.2 9.2E-11 3.1E-15 105.8 10.7 111 93-206 2-127 (301)
87 3v9p_A DTMP kinase, thymidylat 99.2 1.6E-10 5.4E-15 102.1 11.7 158 91-266 23-226 (227)
88 2axn_A 6-phosphofructo-2-kinas 99.2 8.9E-11 3.1E-15 115.3 10.3 111 92-202 34-164 (520)
89 3hjn_A DTMP kinase, thymidylat 99.1 2.4E-09 8.3E-14 92.1 16.3 160 94-269 1-194 (197)
90 2p5t_B PEZT; postsegregational 99.1 2.9E-10 9.9E-15 100.9 10.6 106 92-202 31-153 (253)
91 3ld9_A DTMP kinase, thymidylat 99.1 1.3E-10 4.5E-15 102.5 7.2 157 92-267 20-216 (223)
92 4tmk_A Protein (thymidylate ki 99.1 1E-09 3.6E-14 95.8 11.5 158 92-268 2-208 (213)
93 3tr0_A Guanylate kinase, GMP k 99.0 6E-09 2E-13 88.1 15.3 66 187-267 119-187 (205)
94 3zvl_A Bifunctional polynucleo 99.0 1.3E-09 4.3E-14 104.0 11.7 126 92-236 257-394 (416)
95 2vp4_A Deoxynucleoside kinase; 99.0 2.1E-09 7.2E-14 93.9 11.8 70 186-268 147-226 (230)
96 2ze6_A Isopentenyl transferase 99.0 2.1E-10 7.3E-15 102.2 4.6 108 94-202 2-134 (253)
97 3tmk_A Thymidylate kinase; pho 99.0 2.5E-09 8.5E-14 93.8 11.1 161 92-269 4-205 (216)
98 1gvn_B Zeta; postsegregational 99.0 7.5E-09 2.6E-13 94.0 14.4 108 92-202 32-158 (287)
99 2ocp_A DGK, deoxyguanosine kin 98.9 2.5E-08 8.5E-13 87.3 14.9 30 92-121 1-31 (241)
100 1bif_A 6-phosphofructo-2-kinas 98.9 1.1E-09 3.7E-14 105.9 6.5 109 92-202 38-168 (469)
101 3asz_A Uridine kinase; cytidin 98.9 1.2E-08 4.1E-13 87.0 12.3 38 92-129 5-44 (211)
102 1g8f_A Sulfate adenylyltransfe 98.9 7.3E-09 2.5E-13 101.5 11.7 35 92-126 394-435 (511)
103 3tau_A Guanylate kinase, GMP k 98.9 3.6E-09 1.2E-13 91.1 7.0 66 187-267 121-189 (208)
104 2j41_A Guanylate kinase; GMP, 98.8 1.6E-08 5.5E-13 85.4 9.9 26 92-117 5-30 (207)
105 2jeo_A Uridine-cytidine kinase 98.8 1.8E-08 6.2E-13 88.6 9.2 29 92-120 24-52 (245)
106 1a7j_A Phosphoribulokinase; tr 98.8 6.7E-09 2.3E-13 94.5 6.4 38 92-129 4-46 (290)
107 3d3q_A TRNA delta(2)-isopenten 98.8 1.2E-08 4E-13 95.3 7.4 99 94-197 8-126 (340)
108 3crm_A TRNA delta(2)-isopenten 98.7 4.6E-09 1.6E-13 97.4 4.3 80 93-174 5-104 (323)
109 3c8u_A Fructokinase; YP_612366 98.7 2.8E-08 9.7E-13 85.2 7.2 36 92-127 21-61 (208)
110 3a00_A Guanylate kinase, GMP k 98.6 2.8E-08 9.5E-13 83.8 5.5 67 186-266 114-184 (186)
111 1kgd_A CASK, peripheral plasma 98.6 4.2E-08 1.4E-12 82.3 6.2 27 91-117 3-29 (180)
112 2ga8_A Hypothetical 39.9 kDa p 98.6 6.5E-09 2.2E-13 97.6 0.1 61 94-156 25-105 (359)
113 1rz3_A Hypothetical protein rb 98.6 5.2E-08 1.8E-12 83.2 5.7 37 92-128 21-62 (201)
114 1gtv_A TMK, thymidylate kinase 98.5 9.1E-09 3.1E-13 87.5 0.1 26 94-119 1-26 (214)
115 1dek_A Deoxynucleoside monopho 98.5 1E-07 3.4E-12 84.9 6.4 36 94-129 2-37 (241)
116 3ch4_B Pmkase, phosphomevalona 98.4 3.9E-06 1.3E-10 72.8 13.6 151 92-265 10-188 (202)
117 3lnc_A Guanylate kinase, GMP k 98.4 6.3E-07 2.1E-11 77.7 8.6 64 188-266 142-208 (231)
118 1sq5_A Pantothenate kinase; P- 98.4 6.2E-07 2.1E-11 81.8 8.6 37 91-127 78-121 (308)
119 1ex7_A Guanylate kinase; subst 98.3 1.1E-06 3.7E-11 75.2 7.5 24 94-117 2-25 (186)
120 3tqc_A Pantothenate kinase; bi 98.3 1.8E-06 6.2E-11 79.8 8.3 50 78-127 74-133 (321)
121 3m6a_A ATP-dependent protease 98.1 8.5E-07 2.9E-11 87.3 3.2 77 47-123 41-138 (543)
122 3exa_A TRNA delta(2)-isopenten 98.1 4.4E-06 1.5E-10 77.2 7.1 81 92-172 2-100 (322)
123 3aez_A Pantothenate kinase; tr 98.1 2.5E-06 8.4E-11 78.4 5.4 27 91-117 88-114 (312)
124 3ney_A 55 kDa erythrocyte memb 98.0 8.6E-06 2.9E-10 70.3 6.5 34 85-118 11-44 (197)
125 1p6x_A Thymidine kinase; P-loo 97.9 2.9E-05 9.9E-10 72.2 9.3 29 91-119 5-33 (334)
126 3foz_A TRNA delta(2)-isopenten 97.9 1.1E-05 3.8E-10 74.4 6.1 37 91-127 8-44 (316)
127 1lvg_A Guanylate kinase, GMP k 97.9 2.2E-05 7.6E-10 66.7 6.6 26 92-117 3-28 (198)
128 3eph_A TRNA isopentenyltransfe 97.8 1.8E-05 6.3E-10 75.3 6.2 80 93-172 2-99 (409)
129 1s96_A Guanylate kinase, GMP k 97.8 0.00037 1.3E-08 60.5 14.1 28 91-118 14-41 (219)
130 1lv7_A FTSH; alpha/beta domain 97.8 1.9E-05 6.6E-10 69.1 5.0 32 93-124 45-76 (257)
131 3eie_A Vacuolar protein sortin 97.7 6.8E-05 2.3E-09 68.3 6.9 33 92-124 50-82 (322)
132 1osn_A Thymidine kinase, VZV-T 97.6 0.00021 7.1E-09 66.6 9.8 31 90-120 9-40 (341)
133 3ec2_A DNA replication protein 97.6 8.2E-05 2.8E-09 61.5 5.8 41 77-117 19-62 (180)
134 3t15_A Ribulose bisphosphate c 97.6 4E-05 1.4E-09 69.2 4.2 33 93-125 36-68 (293)
135 4gp7_A Metallophosphoesterase; 97.6 0.00014 4.7E-09 60.2 7.2 35 92-128 8-42 (171)
136 3cf0_A Transitional endoplasmi 97.6 0.00012 3.9E-09 66.2 7.2 43 91-133 47-91 (301)
137 4b4t_K 26S protease regulatory 97.5 7.5E-05 2.6E-09 71.6 5.7 33 92-124 205-237 (428)
138 4b4t_L 26S protease subunit RP 97.5 7.8E-05 2.7E-09 71.6 5.8 33 92-124 214-246 (437)
139 4b4t_M 26S protease regulatory 97.5 0.00011 3.6E-09 70.6 6.7 33 92-124 214-246 (434)
140 3b9p_A CG5977-PA, isoform A; A 97.5 0.00014 4.7E-09 64.8 7.0 32 92-123 53-84 (297)
141 3h4m_A Proteasome-activating n 97.5 0.00015 5.2E-09 64.0 7.0 33 91-123 49-81 (285)
142 1g41_A Heat shock protein HSLU 97.5 5.2E-05 1.8E-09 73.0 4.1 36 91-126 48-83 (444)
143 4b4t_J 26S protease regulatory 97.5 0.00013 4.3E-09 69.5 6.5 33 92-124 181-213 (405)
144 1of1_A Thymidine kinase; trans 97.5 0.00095 3.2E-08 62.9 12.4 28 91-118 47-74 (376)
145 1jbk_A CLPB protein; beta barr 97.5 0.00017 5.8E-09 58.5 6.1 37 81-117 31-67 (195)
146 3hws_A ATP-dependent CLP prote 97.5 6.9E-05 2.4E-09 69.2 4.0 34 92-125 50-83 (363)
147 2qz4_A Paraplegin; AAA+, SPG7, 97.5 8.3E-05 2.8E-09 64.6 4.3 32 92-123 38-69 (262)
148 4b4t_I 26S protease regulatory 97.4 0.00013 4.3E-09 70.1 5.8 33 92-124 215-247 (437)
149 2p65_A Hypothetical protein PF 97.4 0.00014 4.8E-09 59.0 5.3 35 83-117 33-67 (187)
150 4b4t_H 26S protease regulatory 97.4 0.00012 4E-09 70.9 4.8 33 92-124 242-274 (467)
151 2c9o_A RUVB-like 1; hexameric 97.4 0.00018 6.1E-09 68.9 6.0 36 89-124 59-96 (456)
152 2r62_A Cell division protease 97.3 7.4E-05 2.5E-09 65.5 2.5 32 93-124 44-75 (268)
153 1um8_A ATP-dependent CLP prote 97.3 0.00013 4.5E-09 67.6 3.9 34 92-125 71-104 (376)
154 1ofh_A ATP-dependent HSL prote 97.3 0.00015 5.3E-09 64.2 4.0 33 91-123 48-80 (310)
155 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00042 1.4E-08 63.3 6.9 31 92-122 44-75 (322)
156 3bos_A Putative DNA replicatio 97.3 0.00035 1.2E-08 59.1 5.8 41 78-118 37-77 (242)
157 3syl_A Protein CBBX; photosynt 97.2 0.00019 6.5E-09 64.0 4.3 27 92-118 66-92 (309)
158 1d2n_A N-ethylmaleimide-sensit 97.2 0.00018 6.1E-09 63.5 3.9 33 92-124 63-95 (272)
159 2qmh_A HPR kinase/phosphorylas 97.2 0.00014 4.9E-09 63.0 3.0 36 91-127 32-67 (205)
160 2qp9_X Vacuolar protein sortin 97.2 0.00039 1.3E-08 64.4 6.1 32 93-124 84-115 (355)
161 2chg_A Replication factor C sm 97.2 0.00038 1.3E-08 57.7 5.3 40 78-117 23-62 (226)
162 3d8b_A Fidgetin-like protein 1 97.2 0.00043 1.5E-08 64.0 6.1 32 92-123 116-147 (357)
163 3vfd_A Spastin; ATPase, microt 97.2 0.00074 2.5E-08 63.0 7.6 32 92-123 147-178 (389)
164 3n70_A Transport activator; si 97.2 0.00032 1.1E-08 56.3 4.4 31 92-122 23-56 (145)
165 2kjq_A DNAA-related protein; s 97.2 0.00027 9.1E-09 57.6 3.9 26 92-117 35-60 (149)
166 2ce7_A Cell division protein F 97.2 0.00029 1E-08 68.3 4.8 32 93-124 49-80 (476)
167 2w58_A DNAI, primosome compone 97.1 0.00062 2.1E-08 57.0 6.0 39 79-117 36-78 (202)
168 2x8a_A Nuclear valosin-contain 97.1 0.00029 9.8E-09 63.1 4.1 31 93-123 44-74 (274)
169 1ye8_A Protein THEP1, hypothet 97.1 0.00029 9.8E-09 59.2 3.6 28 94-121 1-28 (178)
170 1ixz_A ATP-dependent metallopr 97.1 0.00035 1.2E-08 60.9 4.2 32 93-124 49-80 (254)
171 3cf2_A TER ATPase, transitiona 97.1 0.00079 2.7E-08 69.2 7.3 34 92-125 237-270 (806)
172 3pfi_A Holliday junction ATP-d 97.1 0.00073 2.5E-08 61.1 6.4 34 92-125 54-87 (338)
173 1l8q_A Chromosomal replication 97.1 0.00067 2.3E-08 61.3 6.1 49 80-128 22-77 (324)
174 3pxg_A Negative regulator of g 97.0 0.00066 2.2E-08 65.3 5.9 48 78-125 186-243 (468)
175 1sxj_A Activator 1 95 kDa subu 97.0 0.0007 2.4E-08 65.8 6.0 32 93-124 77-108 (516)
176 1in4_A RUVB, holliday junction 97.0 0.00043 1.5E-08 63.4 4.2 29 93-121 51-79 (334)
177 1odf_A YGR205W, hypothetical 3 97.0 0.00034 1.2E-08 63.4 3.4 37 92-128 30-74 (290)
178 1znw_A Guanylate kinase, GMP k 97.0 0.00044 1.5E-08 58.7 3.9 27 92-118 19-45 (207)
179 3co5_A Putative two-component 97.0 0.00028 9.7E-09 56.6 2.4 42 79-123 15-56 (143)
180 1z6g_A Guanylate kinase; struc 97.0 0.00043 1.5E-08 59.6 3.6 26 92-117 22-47 (218)
181 2zan_A Vacuolar protein sortin 97.0 0.0011 3.9E-08 63.1 6.9 39 92-130 166-207 (444)
182 1iy2_A ATP-dependent metallopr 96.9 0.0006 2.1E-08 60.4 4.1 31 94-124 74-104 (278)
183 2qby_B CDC6 homolog 3, cell di 96.9 0.0011 3.8E-08 60.6 5.8 34 92-125 44-88 (384)
184 3pxi_A Negative regulator of g 96.9 0.001 3.6E-08 67.4 5.9 49 78-126 186-244 (758)
185 2r44_A Uncharacterized protein 96.8 0.00059 2E-08 61.7 3.3 30 93-122 46-75 (331)
186 3uk6_A RUVB-like 2; hexameric 96.8 0.00085 2.9E-08 61.2 4.3 31 89-119 66-96 (368)
187 1tue_A Replication protein E1; 96.8 0.0012 4.1E-08 57.5 4.9 43 81-123 45-88 (212)
188 1svm_A Large T antigen; AAA+ f 96.8 0.00099 3.4E-08 62.7 4.7 32 92-123 168-199 (377)
189 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00067 2.3E-08 60.7 3.3 31 92-122 37-67 (324)
190 2ehv_A Hypothetical protein PH 96.7 0.00086 2.9E-08 57.5 3.6 25 90-114 27-51 (251)
191 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0011 3.8E-08 64.6 4.8 32 93-124 64-95 (499)
192 1htw_A HI0065; nucleotide-bind 96.7 0.00098 3.3E-08 55.0 3.7 27 91-117 31-57 (158)
193 2chq_A Replication factor C sm 96.7 0.0026 8.7E-08 56.4 6.5 40 78-117 23-62 (319)
194 1sxj_C Activator 1 40 kDa subu 96.7 0.0022 7.4E-08 58.4 6.1 24 95-118 48-71 (340)
195 2v1u_A Cell division control p 96.7 0.0009 3.1E-08 60.8 3.5 26 92-117 43-68 (387)
196 1njg_A DNA polymerase III subu 96.7 0.003 1E-07 52.6 6.5 27 93-119 45-71 (250)
197 4a74_A DNA repair and recombin 96.6 0.00098 3.4E-08 56.4 3.3 27 91-117 23-49 (231)
198 2qby_A CDC6 homolog 1, cell di 96.6 0.0015 5.2E-08 59.1 4.7 33 92-124 44-82 (386)
199 1fnn_A CDC6P, cell division co 96.6 0.0022 7.5E-08 58.4 5.7 28 95-122 46-77 (389)
200 2z4s_A Chromosomal replication 96.6 0.0024 8.1E-08 60.9 6.1 49 79-127 115-171 (440)
201 3tqf_A HPR(Ser) kinase; transf 96.6 0.0014 4.7E-08 55.7 3.9 37 91-128 14-50 (181)
202 3hu3_A Transitional endoplasmi 96.6 0.0012 4.2E-08 64.0 4.0 34 91-124 236-269 (489)
203 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0015 5E-08 55.1 4.0 28 90-117 20-47 (235)
204 3pvs_A Replication-associated 96.6 0.0013 4.4E-08 63.1 3.9 32 94-125 51-82 (447)
205 2qgz_A Helicase loader, putati 96.6 0.0023 7.9E-08 58.1 5.4 53 79-131 135-196 (308)
206 2i3b_A HCR-ntpase, human cance 96.6 0.0013 4.6E-08 55.7 3.5 25 93-117 1-25 (189)
207 2bjv_A PSP operon transcriptio 96.5 0.0021 7E-08 56.3 4.7 27 92-118 28-54 (265)
208 3te6_A Regulatory protein SIR3 96.5 0.0018 6E-08 59.6 4.4 27 91-117 43-69 (318)
209 4fcw_A Chaperone protein CLPB; 96.5 0.0013 4.5E-08 58.5 3.4 24 94-117 48-71 (311)
210 3cf2_A TER ATPase, transitiona 96.5 0.0029 9.8E-08 65.1 6.3 34 92-125 510-543 (806)
211 3tif_A Uncharacterized ABC tra 96.5 0.0012 4.2E-08 57.7 3.1 24 92-115 30-53 (235)
212 2v9p_A Replication protein E1; 96.5 0.0017 5.7E-08 59.5 4.0 26 92-117 125-150 (305)
213 2pcj_A ABC transporter, lipopr 96.5 0.0014 4.7E-08 56.9 3.0 24 92-115 29-52 (224)
214 1sxj_D Activator 1 41 kDa subu 96.4 0.0024 8.1E-08 57.6 4.6 38 81-118 46-83 (353)
215 1ypw_A Transitional endoplasmi 96.4 0.0013 4.3E-08 67.6 3.1 34 92-125 237-270 (806)
216 1iqp_A RFCS; clamp loader, ext 96.4 0.0034 1.2E-07 55.7 5.6 41 78-118 31-71 (327)
217 2cvh_A DNA repair and recombin 96.4 0.0019 6.4E-08 54.3 3.6 37 90-126 17-55 (220)
218 2cbz_A Multidrug resistance-as 96.4 0.0016 5.5E-08 57.0 3.1 24 92-115 30-53 (237)
219 1sxj_E Activator 1 40 kDa subu 96.4 0.004 1.4E-07 56.4 5.8 40 78-117 20-60 (354)
220 2eyu_A Twitching motility prot 96.3 0.0022 7.6E-08 57.0 3.8 28 90-117 22-49 (261)
221 2orw_A Thymidine kinase; TMTK, 96.3 0.0027 9.4E-08 53.3 4.0 26 92-117 2-27 (184)
222 4g1u_C Hemin import ATP-bindin 96.3 0.0018 6.2E-08 57.8 3.1 24 92-115 36-59 (266)
223 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0022 7.6E-08 56.5 3.6 24 92-115 28-51 (250)
224 1rj9_A FTSY, signal recognitio 96.3 0.0025 8.4E-08 58.1 4.0 26 92-117 101-126 (304)
225 2ff7_A Alpha-hemolysin translo 96.3 0.0019 6.6E-08 56.9 3.1 25 92-116 34-58 (247)
226 1n0w_A DNA repair protein RAD5 96.3 0.0024 8.2E-08 54.4 3.6 27 90-116 21-47 (243)
227 1b0u_A Histidine permease; ABC 96.3 0.002 6.7E-08 57.4 3.1 25 92-116 31-55 (262)
228 1xjc_A MOBB protein homolog; s 96.3 0.0029 9.8E-08 53.0 3.9 25 93-117 4-28 (169)
229 1ji0_A ABC transporter; ATP bi 96.3 0.002 6.8E-08 56.5 3.1 25 92-116 31-55 (240)
230 3gfo_A Cobalt import ATP-bindi 96.3 0.002 6.7E-08 58.0 3.1 25 92-116 33-57 (275)
231 2pze_A Cystic fibrosis transme 96.3 0.002 6.9E-08 56.0 3.1 25 92-116 33-57 (229)
232 1ypw_A Transitional endoplasmi 96.3 0.0019 6.3E-08 66.4 3.2 33 92-124 510-542 (806)
233 1g6h_A High-affinity branched- 96.3 0.002 6.9E-08 57.0 3.1 25 92-116 32-56 (257)
234 3b9q_A Chloroplast SRP recepto 96.3 0.0026 8.9E-08 57.9 3.8 26 92-117 99-124 (302)
235 1mv5_A LMRA, multidrug resista 96.2 0.002 6.7E-08 56.6 2.8 25 92-116 27-51 (243)
236 2olj_A Amino acid ABC transpor 96.2 0.0022 7.5E-08 57.3 3.1 25 92-116 49-73 (263)
237 1c9k_A COBU, adenosylcobinamid 96.2 0.0018 6.1E-08 54.9 2.4 28 96-124 2-31 (180)
238 2zu0_C Probable ATP-dependent 96.2 0.0027 9.1E-08 56.6 3.6 25 92-116 45-69 (267)
239 2ghi_A Transport protein; mult 96.2 0.0022 7.7E-08 56.9 3.1 25 92-116 45-69 (260)
240 1sgw_A Putative ABC transporte 96.2 0.002 6.9E-08 55.7 2.7 25 92-116 34-58 (214)
241 2ixe_A Antigen peptide transpo 96.2 0.0022 7.6E-08 57.3 3.1 25 92-116 44-68 (271)
242 1sxj_B Activator 1 37 kDa subu 96.2 0.005 1.7E-07 54.6 5.2 38 80-117 29-66 (323)
243 3b85_A Phosphate starvation-in 96.2 0.0021 7.1E-08 55.3 2.6 25 92-116 21-45 (208)
244 1cr0_A DNA primase/helicase; R 96.2 0.0033 1.1E-07 56.0 4.0 29 89-117 31-59 (296)
245 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0063 2.2E-07 61.5 6.4 39 79-117 193-231 (758)
246 1qvr_A CLPB protein; coiled co 96.1 0.0042 1.4E-07 63.9 5.1 39 79-117 177-215 (854)
247 1vpl_A ABC transporter, ATP-bi 96.1 0.0026 8.8E-08 56.5 3.1 25 92-116 40-64 (256)
248 1vma_A Cell division protein F 96.1 0.0032 1.1E-07 57.5 3.8 26 92-117 103-128 (306)
249 2qi9_C Vitamin B12 import ATP- 96.1 0.0026 8.8E-08 56.3 3.1 25 92-116 25-49 (249)
250 2yz2_A Putative ABC transporte 96.1 0.0026 9E-08 56.6 3.1 25 92-116 32-56 (266)
251 3e70_C DPA, signal recognition 96.1 0.0032 1.1E-07 58.0 3.7 26 92-117 128-153 (328)
252 2f1r_A Molybdopterin-guanine d 96.1 0.002 7E-08 53.8 2.2 24 94-117 3-26 (171)
253 1lw7_A Transcriptional regulat 96.1 0.0031 1.1E-07 58.3 3.6 28 93-120 170-197 (365)
254 2ihy_A ABC transporter, ATP-bi 96.1 0.0027 9.2E-08 57.1 3.1 26 92-117 46-71 (279)
255 2dr3_A UPF0273 protein PH0284; 96.1 0.0041 1.4E-07 53.0 4.0 38 89-126 19-61 (247)
256 2px0_A Flagellar biosynthesis 96.1 0.0039 1.3E-07 56.5 4.0 35 92-126 104-144 (296)
257 2nq2_C Hypothetical ABC transp 96.1 0.0029 1E-07 56.0 3.1 25 92-116 30-54 (253)
258 2yv5_A YJEQ protein; hydrolase 96.1 0.0043 1.5E-07 56.1 4.2 27 88-114 160-186 (302)
259 2wsm_A Hydrogenase expression/ 96.0 0.005 1.7E-07 51.8 4.3 34 85-118 22-55 (221)
260 1np6_A Molybdopterin-guanine d 96.0 0.0048 1.6E-07 51.7 4.1 25 93-117 6-30 (174)
261 1jr3_A DNA polymerase III subu 96.0 0.011 3.7E-07 53.6 6.6 27 93-119 38-64 (373)
262 1e2k_A Thymidine kinase; trans 96.0 0.0015 5.2E-08 60.5 0.8 28 91-118 2-29 (331)
263 2og2_A Putative signal recogni 96.0 0.0042 1.4E-07 58.0 3.7 26 92-117 156-181 (359)
264 1nlf_A Regulatory protein REPA 95.9 0.0049 1.7E-07 54.5 4.0 27 90-116 27-53 (279)
265 3u61_B DNA polymerase accessor 95.9 0.0078 2.7E-07 54.0 5.2 47 78-124 32-79 (324)
266 2qen_A Walker-type ATPase; unk 95.9 0.0048 1.6E-07 55.1 3.8 33 93-125 31-63 (350)
267 1g8p_A Magnesium-chelatase 38 95.9 0.0026 8.8E-08 57.4 1.8 26 93-118 45-70 (350)
268 2onk_A Molybdate/tungstate ABC 95.9 0.0047 1.6E-07 54.3 3.4 23 94-116 25-47 (240)
269 1ojl_A Transcriptional regulat 95.9 0.0069 2.4E-07 54.7 4.6 37 79-117 13-49 (304)
270 1r6b_X CLPA protein; AAA+, N-t 95.8 0.0048 1.6E-07 62.4 3.8 29 95-123 490-518 (758)
271 3fvq_A Fe(3+) IONS import ATP- 95.8 0.0048 1.6E-07 57.7 3.6 25 92-116 29-53 (359)
272 3nh6_A ATP-binding cassette SU 95.8 0.0032 1.1E-07 57.5 2.3 25 92-116 79-103 (306)
273 2bbs_A Cystic fibrosis transme 95.8 0.0044 1.5E-07 56.0 3.0 25 92-116 63-87 (290)
274 2pjz_A Hypothetical protein ST 95.8 0.0044 1.5E-07 55.3 2.9 24 93-116 30-53 (263)
275 2yhs_A FTSY, cell division pro 95.8 0.0055 1.9E-07 59.8 3.8 26 92-117 292-317 (503)
276 2gza_A Type IV secretion syste 95.8 0.0048 1.6E-07 57.3 3.2 26 92-117 174-199 (361)
277 1z47_A CYSA, putative ABC-tran 95.8 0.0055 1.9E-07 57.1 3.6 25 92-116 40-64 (355)
278 2yyz_A Sugar ABC transporter, 95.7 0.0055 1.9E-07 57.2 3.6 25 92-116 28-52 (359)
279 3kta_A Chromosome segregation 95.7 0.008 2.7E-07 49.2 4.2 26 93-118 26-51 (182)
280 3rlf_A Maltose/maltodextrin im 95.7 0.0056 1.9E-07 57.7 3.6 25 92-116 28-52 (381)
281 1u0l_A Probable GTPase ENGC; p 95.7 0.005 1.7E-07 55.6 3.1 27 89-115 165-191 (301)
282 2rcn_A Probable GTPase ENGC; Y 95.7 0.0063 2.2E-07 56.8 3.9 27 89-115 211-237 (358)
283 2it1_A 362AA long hypothetical 95.7 0.0058 2E-07 57.1 3.6 25 92-116 28-52 (362)
284 2ewv_A Twitching motility prot 95.7 0.0062 2.1E-07 56.9 3.7 27 91-117 134-160 (372)
285 1v43_A Sugar-binding transport 95.7 0.0061 2.1E-07 57.2 3.6 25 92-116 36-60 (372)
286 3tui_C Methionine import ATP-b 95.7 0.0062 2.1E-07 57.1 3.6 24 92-115 53-76 (366)
287 1g29_1 MALK, maltose transport 95.6 0.0064 2.2E-07 57.0 3.6 25 92-116 28-52 (372)
288 3d31_A Sulfate/molybdate ABC t 95.6 0.005 1.7E-07 57.3 2.8 25 92-116 25-49 (348)
289 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0056 1.9E-07 58.9 3.2 26 92-117 137-162 (460)
290 2hf9_A Probable hydrogenase ni 95.6 0.012 4.2E-07 49.5 5.0 29 89-117 34-62 (226)
291 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0042 1.4E-07 60.5 2.2 29 91-119 39-67 (500)
292 1ko7_A HPR kinase/phosphatase; 95.6 0.0079 2.7E-07 55.3 3.9 36 92-128 143-178 (314)
293 2fna_A Conserved hypothetical 95.5 0.017 5.7E-07 51.6 5.8 31 94-124 31-63 (357)
294 1pzn_A RAD51, DNA repair and r 95.5 0.0084 2.9E-07 55.4 3.9 29 89-117 127-155 (349)
295 2b8t_A Thymidine kinase; deoxy 95.5 0.009 3.1E-07 52.1 3.8 27 91-117 10-36 (223)
296 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0057 1.9E-07 56.6 2.6 36 89-124 119-156 (331)
297 3gd7_A Fusion complex of cysti 95.5 0.0079 2.7E-07 56.8 3.6 24 92-115 46-69 (390)
298 1zu4_A FTSY; GTPase, signal re 95.5 0.0088 3E-07 54.8 3.8 35 92-126 104-143 (320)
299 1u0j_A DNA replication protein 95.5 0.011 3.6E-07 53.2 4.1 36 84-119 93-130 (267)
300 1oxx_K GLCV, glucose, ABC tran 95.4 0.005 1.7E-07 57.3 2.1 25 92-116 30-54 (353)
301 2r2a_A Uncharacterized protein 95.4 0.01 3.6E-07 50.6 3.9 25 92-116 4-28 (199)
302 3jvv_A Twitching mobility prot 95.4 0.0095 3.2E-07 55.4 3.7 27 91-117 121-147 (356)
303 3dm5_A SRP54, signal recogniti 95.4 0.016 5.6E-07 55.6 5.4 35 93-127 100-139 (443)
304 3kl4_A SRP54, signal recogniti 95.3 0.0084 2.9E-07 57.4 3.1 35 92-126 96-135 (433)
305 1oix_A RAS-related protein RAB 95.3 0.01 3.6E-07 49.0 3.4 23 94-116 30-52 (191)
306 2gj8_A MNME, tRNA modification 95.3 0.01 3.5E-07 48.2 3.2 24 92-115 3-26 (172)
307 2www_A Methylmalonic aciduria 95.3 0.019 6.4E-07 53.0 5.3 25 93-117 74-98 (349)
308 3sop_A Neuronal-specific septi 95.3 0.011 3.8E-07 52.7 3.6 24 94-117 3-26 (270)
309 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.0068 2.3E-07 55.7 2.3 26 92-117 170-195 (330)
310 2qm8_A GTPase/ATPase; G protei 95.2 0.011 3.9E-07 54.3 3.8 26 92-117 54-79 (337)
311 1w5s_A Origin recognition comp 95.2 0.014 4.9E-07 53.5 4.5 26 92-117 49-76 (412)
312 3k1j_A LON protease, ATP-depen 95.2 0.0086 3E-07 59.2 3.2 28 92-119 59-86 (604)
313 2dyk_A GTP-binding protein; GT 95.2 0.011 3.9E-07 46.4 3.3 22 94-115 2-23 (161)
314 1t9h_A YLOQ, probable GTPase E 95.2 0.0055 1.9E-07 56.0 1.6 28 88-115 168-195 (307)
315 2v3c_C SRP54, signal recogniti 95.2 0.0071 2.4E-07 57.8 2.4 34 93-126 99-137 (432)
316 2f9l_A RAB11B, member RAS onco 95.2 0.012 4.2E-07 48.7 3.4 23 94-116 6-28 (199)
317 1pui_A ENGB, probable GTP-bind 95.2 0.0063 2.2E-07 50.6 1.6 26 89-114 22-47 (210)
318 2ce2_X GTPase HRAS; signaling 95.1 0.012 4.1E-07 46.1 3.1 23 94-116 4-26 (166)
319 3pxi_A Negative regulator of g 95.1 0.012 4.1E-07 59.6 3.9 23 95-117 523-545 (758)
320 3p32_A Probable GTPase RV1496/ 95.1 0.021 7.1E-07 52.6 5.3 34 92-125 78-116 (355)
321 2zts_A Putative uncharacterize 95.1 0.013 4.3E-07 49.9 3.5 27 89-115 26-52 (251)
322 1ls1_A Signal recognition part 95.1 0.013 4.6E-07 52.8 3.7 26 92-117 97-122 (295)
323 1xx6_A Thymidine kinase; NESG, 95.1 0.015 5.2E-07 49.3 3.8 27 91-117 6-32 (191)
324 1p9r_A General secretion pathw 95.1 0.014 4.7E-07 55.5 3.9 28 91-118 165-192 (418)
325 2wji_A Ferrous iron transport 95.0 0.012 4.2E-07 47.2 3.0 22 94-115 4-25 (165)
326 1kao_A RAP2A; GTP-binding prot 95.0 0.014 4.6E-07 45.9 3.2 23 93-115 3-25 (167)
327 1z2a_A RAS-related protein RAB 95.0 0.015 5.1E-07 45.9 3.4 22 94-115 6-27 (168)
328 3hr8_A Protein RECA; alpha and 95.0 0.015 5.2E-07 54.2 3.7 38 89-126 57-99 (356)
329 2wjg_A FEOB, ferrous iron tran 95.0 0.013 4.5E-07 47.5 3.0 24 92-115 6-29 (188)
330 1u8z_A RAS-related protein RAL 94.9 0.015 5.1E-07 45.7 3.2 24 92-115 3-26 (168)
331 1yqt_A RNAse L inhibitor; ATP- 94.9 0.014 4.8E-07 57.1 3.6 25 92-116 46-70 (538)
332 1a5t_A Delta prime, HOLB; zinc 94.9 0.019 6.5E-07 52.3 4.3 28 93-120 24-51 (334)
333 3b5x_A Lipid A export ATP-bind 94.9 0.014 4.7E-07 57.5 3.5 26 92-117 368-393 (582)
334 3tvt_A Disks large 1 tumor sup 94.8 0.068 2.3E-06 48.4 7.7 67 186-269 210-279 (292)
335 1knx_A Probable HPR(Ser) kinas 94.8 0.014 4.8E-07 53.5 3.1 37 91-128 145-181 (312)
336 3lda_A DNA repair protein RAD5 94.8 0.016 5.4E-07 54.8 3.6 27 89-115 174-200 (400)
337 3b60_A Lipid A export ATP-bind 94.8 0.013 4.4E-07 57.7 3.0 26 92-117 368-393 (582)
338 2zr9_A Protein RECA, recombina 94.8 0.02 6.8E-07 53.0 4.0 37 89-125 57-98 (349)
339 2ged_A SR-beta, signal recogni 94.8 0.022 7.4E-07 46.5 3.8 24 92-115 47-70 (193)
340 2zej_A Dardarin, leucine-rich 94.7 0.015 5.1E-07 47.5 2.7 22 94-115 3-24 (184)
341 2lkc_A Translation initiation 94.7 0.022 7.5E-07 45.5 3.6 24 92-115 7-30 (178)
342 1c1y_A RAS-related protein RAP 94.7 0.019 6.5E-07 45.2 3.2 23 93-115 3-25 (167)
343 1qvr_A CLPB protein; coiled co 94.6 0.026 8.8E-07 58.0 4.9 29 94-122 589-620 (854)
344 1nrj_B SR-beta, signal recogni 94.6 0.023 7.9E-07 47.4 3.8 26 92-117 11-36 (218)
345 2oap_1 GSPE-2, type II secreti 94.6 0.015 5E-07 56.8 2.8 26 92-117 259-284 (511)
346 1ek0_A Protein (GTP-binding pr 94.6 0.022 7.6E-07 44.8 3.4 22 94-115 4-25 (170)
347 3q72_A GTP-binding protein RAD 94.6 0.02 6.7E-07 45.3 3.0 21 94-114 3-23 (166)
348 1tf7_A KAIC; homohexamer, hexa 94.6 0.019 6.6E-07 55.7 3.6 23 91-113 37-59 (525)
349 3bh0_A DNAB-like replicative h 94.6 0.026 8.9E-07 51.1 4.2 30 88-117 63-92 (315)
350 3q85_A GTP-binding protein REM 94.6 0.022 7.4E-07 45.2 3.2 21 94-114 3-23 (169)
351 1z0j_A RAB-22, RAS-related pro 94.5 0.023 7.9E-07 44.8 3.4 24 93-116 6-29 (170)
352 1ky3_A GTP-binding protein YPT 94.5 0.023 7.9E-07 45.4 3.4 23 93-115 8-30 (182)
353 2erx_A GTP-binding protein DI- 94.5 0.022 7.6E-07 44.9 3.2 22 94-115 4-25 (172)
354 2nzj_A GTP-binding protein REM 94.5 0.022 7.5E-07 45.3 3.2 22 94-115 5-26 (175)
355 1z08_A RAS-related protein RAB 94.5 0.024 8.1E-07 44.9 3.4 22 94-115 7-28 (170)
356 2p67_A LAO/AO transport system 94.5 0.023 7.8E-07 52.1 3.7 26 92-117 55-80 (341)
357 2obl_A ESCN; ATPase, hydrolase 94.5 0.025 8.6E-07 52.3 4.0 33 86-118 64-96 (347)
358 1g16_A RAS-related protein SEC 94.5 0.024 8.2E-07 44.7 3.4 22 94-115 4-25 (170)
359 3f9v_A Minichromosome maintena 94.5 0.011 3.9E-07 58.5 1.7 29 95-123 329-357 (595)
360 2dpy_A FLII, flagellum-specifi 94.5 0.023 7.9E-07 54.3 3.7 34 85-118 149-182 (438)
361 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.025 8.6E-07 45.1 3.4 22 94-115 8-29 (177)
362 1upt_A ARL1, ADP-ribosylation 94.4 0.027 9.1E-07 44.6 3.5 23 93-115 7-29 (171)
363 1yrb_A ATP(GTP)binding protein 94.4 0.028 9.7E-07 48.4 3.9 34 92-125 13-50 (262)
364 1yqt_A RNAse L inhibitor; ATP- 94.4 0.022 7.6E-07 55.7 3.6 25 92-116 311-335 (538)
365 3con_A GTPase NRAS; structural 94.4 0.025 8.6E-07 46.0 3.4 26 91-116 19-44 (190)
366 3ozx_A RNAse L inhibitor; ATP 94.4 0.019 6.5E-07 56.3 3.1 25 92-116 293-317 (538)
367 2yl4_A ATP-binding cassette SU 94.4 0.014 4.7E-07 57.6 2.1 26 92-117 369-394 (595)
368 2fn4_A P23, RAS-related protei 94.4 0.026 8.9E-07 45.0 3.4 25 92-116 8-32 (181)
369 3upu_A ATP-dependent DNA helic 94.4 0.039 1.3E-06 52.5 5.2 23 95-117 47-69 (459)
370 3ozx_A RNAse L inhibitor; ATP 94.4 0.018 6.1E-07 56.5 2.8 25 92-116 24-48 (538)
371 1j8m_F SRP54, signal recogniti 94.4 0.019 6.6E-07 51.9 2.8 34 93-126 98-136 (297)
372 1r2q_A RAS-related protein RAB 94.3 0.027 9.4E-07 44.3 3.4 22 94-115 7-28 (170)
373 1svi_A GTP-binding protein YSX 94.3 0.03 1E-06 45.6 3.7 24 92-115 22-45 (195)
374 1nij_A Hypothetical protein YJ 94.3 0.019 6.5E-07 52.1 2.7 23 94-116 5-27 (318)
375 2z43_A DNA repair and recombin 94.3 0.025 8.7E-07 51.3 3.6 29 89-117 103-131 (324)
376 3j16_B RLI1P; ribosome recycli 94.3 0.023 8E-07 56.5 3.6 25 92-116 102-126 (608)
377 3bc1_A RAS-related protein RAB 94.3 0.027 9.3E-07 45.4 3.4 22 94-115 12-33 (195)
378 3tw8_B RAS-related protein RAB 94.3 0.024 8.3E-07 45.2 3.1 21 94-114 10-30 (181)
379 1r8s_A ADP-ribosylation factor 94.3 0.031 1E-06 44.0 3.6 22 95-116 2-23 (164)
380 2qag_B Septin-6, protein NEDD5 94.3 0.021 7.2E-07 54.5 3.0 24 92-115 39-64 (427)
381 1z0f_A RAB14, member RAS oncog 94.3 0.029 9.7E-07 44.7 3.4 23 94-116 16-38 (179)
382 3qf4_B Uncharacterized ABC tra 94.3 0.016 5.5E-07 57.3 2.2 25 92-116 380-404 (598)
383 4dsu_A GTPase KRAS, isoform 2B 94.2 0.029 9.9E-07 45.2 3.4 22 94-115 5-26 (189)
384 1u94_A RECA protein, recombina 94.2 0.031 1E-06 52.0 3.9 36 89-124 59-99 (356)
385 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.023 7.7E-07 45.7 2.7 24 92-115 4-27 (186)
386 3clv_A RAB5 protein, putative; 94.2 0.03 1E-06 45.3 3.4 24 93-116 7-30 (208)
387 3ice_A Transcription terminati 94.2 0.04 1.4E-06 52.4 4.6 40 78-117 158-198 (422)
388 2a9k_A RAS-related protein RAL 94.2 0.031 1E-06 44.8 3.4 24 92-115 17-40 (187)
389 1m7b_A RND3/RHOE small GTP-bin 94.2 0.03 1E-06 45.5 3.4 23 93-115 7-29 (184)
390 3bk7_A ABC transporter ATP-bin 94.2 0.022 7.7E-07 56.6 3.1 25 92-116 116-140 (607)
391 1v5w_A DMC1, meiotic recombina 94.2 0.028 9.7E-07 51.6 3.5 27 90-116 119-145 (343)
392 2hxs_A RAB-26, RAS-related pro 94.2 0.029 1E-06 44.8 3.2 23 93-115 6-28 (178)
393 3bk7_A ABC transporter ATP-bin 94.2 0.027 9.1E-07 56.1 3.6 25 92-116 381-405 (607)
394 2y8e_A RAB-protein 6, GH09086P 94.1 0.031 1.1E-06 44.4 3.4 23 93-115 14-36 (179)
395 2ffh_A Protein (FFH); SRP54, s 94.1 0.03 1E-06 53.4 3.7 35 92-126 97-136 (425)
396 4a82_A Cystic fibrosis transme 94.1 0.014 4.9E-07 57.4 1.5 26 92-117 366-391 (578)
397 2cxx_A Probable GTP-binding pr 94.1 0.03 1E-06 45.2 3.2 22 94-115 2-23 (190)
398 1tf7_A KAIC; homohexamer, hexa 94.1 0.032 1.1E-06 54.1 3.9 29 89-117 277-305 (525)
399 2bme_A RAB4A, RAS-related prot 94.1 0.032 1.1E-06 45.0 3.4 22 94-115 11-32 (186)
400 2r6a_A DNAB helicase, replicat 94.1 0.036 1.2E-06 52.8 4.2 29 89-117 199-227 (454)
401 3t1o_A Gliding protein MGLA; G 94.1 0.028 9.5E-07 45.5 3.0 23 94-116 15-37 (198)
402 3pqc_A Probable GTP-binding pr 94.1 0.034 1.2E-06 45.0 3.5 25 92-116 22-46 (195)
403 3e1s_A Exodeoxyribonuclease V, 94.1 0.047 1.6E-06 53.9 5.1 27 91-117 202-228 (574)
404 3k53_A Ferrous iron transport 94.1 0.031 1.1E-06 49.1 3.5 24 92-115 2-25 (271)
405 3kkq_A RAS-related protein M-R 94.0 0.034 1.2E-06 44.8 3.4 25 91-115 16-40 (183)
406 2a5y_B CED-4; apoptosis; HET: 94.0 0.043 1.5E-06 53.4 4.7 24 92-115 151-174 (549)
407 1m2o_B GTP-binding protein SAR 94.0 0.035 1.2E-06 45.7 3.5 24 92-115 22-45 (190)
408 2i1q_A DNA repair and recombin 94.0 0.03 1E-06 50.5 3.3 28 89-116 94-121 (322)
409 2g6b_A RAS-related protein RAB 94.0 0.035 1.2E-06 44.4 3.4 22 94-115 11-32 (180)
410 2oil_A CATX-8, RAS-related pro 94.0 0.034 1.2E-06 45.3 3.4 22 94-115 26-47 (193)
411 1xp8_A RECA protein, recombina 94.0 0.04 1.4E-06 51.4 4.2 38 89-126 70-112 (366)
412 1tq4_A IIGP1, interferon-induc 94.0 0.024 8.1E-07 53.9 2.7 24 92-115 68-91 (413)
413 3qf4_A ABC transporter, ATP-bi 94.0 0.019 6.4E-07 56.7 2.0 26 92-117 368-393 (587)
414 2efe_B Small GTP-binding prote 94.0 0.036 1.2E-06 44.4 3.4 23 93-115 12-34 (181)
415 2j37_W Signal recognition part 94.0 0.031 1.1E-06 54.4 3.5 34 93-126 101-139 (504)
416 3lxx_A GTPase IMAP family memb 93.9 0.033 1.1E-06 47.8 3.2 24 92-115 28-51 (239)
417 1moz_A ARL1, ADP-ribosylation 93.9 0.026 8.9E-07 45.4 2.5 23 92-114 17-39 (183)
418 4ag6_A VIRB4 ATPase, type IV s 93.9 0.039 1.3E-06 51.1 3.9 28 90-117 32-59 (392)
419 2bov_A RAla, RAS-related prote 93.9 0.035 1.2E-06 45.5 3.2 25 91-115 12-36 (206)
420 1sky_E F1-ATPase, F1-ATP synth 93.8 0.046 1.6E-06 52.8 4.4 34 84-117 142-175 (473)
421 2xxa_A Signal recognition part 93.8 0.037 1.3E-06 52.8 3.7 34 93-126 100-139 (433)
422 3tkl_A RAS-related protein RAB 93.8 0.04 1.4E-06 44.8 3.4 22 94-115 17-38 (196)
423 3dz8_A RAS-related protein RAB 93.8 0.042 1.4E-06 44.9 3.6 25 93-117 23-47 (191)
424 3t5g_A GTP-binding protein RHE 93.8 0.038 1.3E-06 44.4 3.2 23 93-115 6-28 (181)
425 3j16_B RLI1P; ribosome recycli 93.7 0.036 1.2E-06 55.2 3.6 25 92-116 377-401 (608)
426 3oes_A GTPase rhebl1; small GT 93.7 0.035 1.2E-06 45.8 3.0 24 92-115 23-46 (201)
427 3bwd_D RAC-like GTP-binding pr 93.7 0.048 1.7E-06 43.6 3.8 24 92-115 7-30 (182)
428 1vg8_A RAS-related protein RAB 93.7 0.041 1.4E-06 45.2 3.4 24 93-116 8-31 (207)
429 1fzq_A ADP-ribosylation factor 93.7 0.039 1.3E-06 44.9 3.2 24 92-115 15-38 (181)
430 3ihw_A Centg3; RAS, centaurin, 93.7 0.039 1.3E-06 45.2 3.2 25 91-115 18-42 (184)
431 1ksh_A ARF-like protein 2; sma 93.7 0.041 1.4E-06 44.5 3.2 24 92-115 17-40 (186)
432 2gf0_A GTP-binding protein DI- 93.7 0.046 1.6E-06 44.5 3.6 23 93-115 8-30 (199)
433 2atv_A RERG, RAS-like estrogen 93.7 0.046 1.6E-06 44.9 3.6 24 92-115 27-50 (196)
434 2gf9_A RAS-related protein RAB 93.6 0.043 1.5E-06 44.6 3.4 22 94-115 23-44 (189)
435 2fg5_A RAB-22B, RAS-related pr 93.6 0.043 1.5E-06 45.0 3.4 23 93-115 23-45 (192)
436 2j9r_A Thymidine kinase; TK1, 93.6 0.048 1.6E-06 47.3 3.8 27 91-117 26-52 (214)
437 1x3s_A RAS-related protein RAB 93.6 0.045 1.5E-06 44.4 3.4 24 92-115 14-37 (195)
438 1f6b_A SAR1; gtpases, N-termin 93.6 0.04 1.4E-06 45.7 3.1 24 91-114 23-46 (198)
439 2iwr_A Centaurin gamma 1; ANK 93.6 0.034 1.2E-06 44.5 2.6 24 92-115 6-29 (178)
440 1z06_A RAS-related protein RAB 93.6 0.046 1.6E-06 44.5 3.4 23 93-115 20-42 (189)
441 3szr_A Interferon-induced GTP- 93.5 0.03 1E-06 55.6 2.6 31 85-115 37-67 (608)
442 1zbd_A Rabphilin-3A; G protein 93.5 0.044 1.5E-06 45.1 3.2 22 94-115 9-30 (203)
443 3c5c_A RAS-like protein 12; GD 93.5 0.048 1.6E-06 44.6 3.4 24 92-115 20-43 (187)
444 2p5s_A RAS and EF-hand domain 93.5 0.048 1.6E-06 44.9 3.4 24 92-115 27-50 (199)
445 1zd9_A ADP-ribosylation factor 93.5 0.048 1.7E-06 44.5 3.4 23 93-115 22-44 (188)
446 1kjw_A Postsynaptic density pr 93.5 0.35 1.2E-05 43.6 9.4 24 91-117 103-126 (295)
447 2a5j_A RAS-related protein RAB 93.4 0.049 1.7E-06 44.5 3.4 22 94-115 22-43 (191)
448 3reg_A RHO-like small GTPase; 93.4 0.05 1.7E-06 44.5 3.4 24 92-115 22-45 (194)
449 1zj6_A ADP-ribosylation factor 93.4 0.049 1.7E-06 44.3 3.3 24 92-115 15-38 (187)
450 2fh5_B SR-beta, signal recogni 93.4 0.051 1.7E-06 45.1 3.5 25 92-116 6-30 (214)
451 2q6t_A DNAB replication FORK h 93.4 0.054 1.8E-06 51.4 4.1 28 89-116 196-223 (444)
452 4bas_A ADP-ribosylation factor 93.4 0.039 1.3E-06 45.0 2.7 24 91-114 15-38 (199)
453 2h17_A ADP-ribosylation factor 93.4 0.045 1.5E-06 44.3 3.0 24 92-115 20-43 (181)
454 1gwn_A RHO-related GTP-binding 93.4 0.049 1.7E-06 45.6 3.4 23 93-115 28-50 (205)
455 2bcg_Y Protein YP2, GTP-bindin 93.4 0.05 1.7E-06 44.9 3.4 22 94-115 9-30 (206)
456 2b6h_A ADP-ribosylation factor 93.3 0.047 1.6E-06 44.9 3.2 23 92-114 28-50 (192)
457 1f2t_A RAD50 ABC-ATPase; DNA d 93.3 0.055 1.9E-06 43.6 3.5 26 92-117 22-47 (149)
458 2ew1_A RAS-related protein RAB 93.3 0.052 1.8E-06 45.4 3.4 22 94-115 27-48 (201)
459 3euj_A Chromosome partition pr 93.2 0.045 1.5E-06 53.1 3.2 24 94-117 30-53 (483)
460 1w36_D RECD, exodeoxyribonucle 93.2 0.055 1.9E-06 53.6 3.9 28 90-117 161-188 (608)
461 2xtp_A GTPase IMAP family memb 93.2 0.053 1.8E-06 47.0 3.4 25 91-115 20-44 (260)
462 4a1f_A DNAB helicase, replicat 93.2 0.066 2.2E-06 49.5 4.2 29 89-117 42-70 (338)
463 3cph_A RAS-related protein SEC 93.2 0.057 1.9E-06 44.5 3.4 23 93-115 20-42 (213)
464 2fv8_A H6, RHO-related GTP-bin 93.2 0.056 1.9E-06 44.9 3.4 23 93-115 25-47 (207)
465 3cbq_A GTP-binding protein REM 93.2 0.041 1.4E-06 45.6 2.5 21 94-114 24-44 (195)
466 2iw3_A Elongation factor 3A; a 93.2 0.049 1.7E-06 57.1 3.6 24 92-115 460-483 (986)
467 2o52_A RAS-related protein RAB 93.1 0.054 1.8E-06 44.8 3.2 23 93-115 25-47 (200)
468 1z6t_A APAF-1, apoptotic prote 93.1 0.048 1.7E-06 52.9 3.4 24 92-115 146-169 (591)
469 2il1_A RAB12; G-protein, GDP, 93.1 0.052 1.8E-06 44.5 3.1 22 94-115 27-48 (192)
470 4gzl_A RAS-related C3 botulinu 93.1 0.058 2E-06 44.8 3.4 25 91-115 28-52 (204)
471 2q3h_A RAS homolog gene family 93.1 0.057 1.9E-06 44.3 3.2 24 92-115 19-42 (201)
472 2qnr_A Septin-2, protein NEDD5 93.1 0.048 1.7E-06 49.1 3.0 22 94-115 19-40 (301)
473 2gco_A H9, RHO-related GTP-bin 93.0 0.06 2.1E-06 44.5 3.4 22 94-115 26-47 (201)
474 2r8r_A Sensor protein; KDPD, P 93.0 0.065 2.2E-06 47.0 3.6 32 95-126 8-44 (228)
475 2atx_A Small GTP binding prote 93.0 0.063 2.1E-06 43.8 3.4 23 94-116 19-41 (194)
476 2fu5_C RAS-related protein RAB 93.0 0.035 1.2E-06 44.7 1.7 22 94-115 9-30 (183)
477 2qu8_A Putative nucleolar GTP- 92.9 0.057 2E-06 45.7 3.2 24 92-115 28-51 (228)
478 1zcb_A G alpha I/13; GTP-bindi 92.9 0.055 1.9E-06 50.3 3.2 23 92-114 32-54 (362)
479 2f7s_A C25KG, RAS-related prot 92.9 0.061 2.1E-06 44.8 3.2 22 94-115 26-47 (217)
480 2hup_A RAS-related protein RAB 92.9 0.066 2.2E-06 44.4 3.4 22 94-115 30-51 (201)
481 2aka_B Dynamin-1; fusion prote 92.9 0.12 4E-06 45.4 5.2 26 90-115 23-48 (299)
482 3lxw_A GTPase IMAP family memb 92.8 0.061 2.1E-06 46.8 3.2 24 92-115 20-43 (247)
483 2h57_A ADP-ribosylation factor 92.8 0.05 1.7E-06 44.3 2.5 24 92-115 20-43 (190)
484 2j1l_A RHO-related GTP-binding 92.8 0.064 2.2E-06 44.9 3.2 24 92-115 33-56 (214)
485 3bgw_A DNAB-like replicative h 92.8 0.077 2.6E-06 50.6 4.1 29 89-117 193-221 (444)
486 2cjw_A GTP-binding protein GEM 92.7 0.068 2.3E-06 44.1 3.2 23 94-116 7-29 (192)
487 2j0v_A RAC-like GTP-binding pr 92.7 0.072 2.4E-06 44.2 3.4 23 93-115 9-31 (212)
488 1jwy_B Dynamin A GTPase domain 92.7 0.12 4.2E-06 45.8 5.1 37 79-115 5-46 (315)
489 2x77_A ADP-ribosylation factor 92.6 0.054 1.8E-06 44.0 2.5 22 93-114 22-43 (189)
490 3iby_A Ferrous iron transport 92.6 0.069 2.4E-06 46.9 3.3 22 94-115 2-23 (256)
491 3q3j_B RHO-related GTP-binding 92.5 0.079 2.7E-06 44.5 3.4 25 91-115 25-49 (214)
492 4f4c_A Multidrug resistance pr 92.5 0.062 2.1E-06 58.0 3.4 26 92-117 443-468 (1321)
493 3ux8_A Excinuclease ABC, A sub 92.5 0.041 1.4E-06 54.9 1.9 22 92-113 347-368 (670)
494 1ni3_A YCHF GTPase, YCHF GTP-b 92.5 0.08 2.7E-06 49.9 3.7 24 92-115 19-42 (392)
495 3cnl_A YLQF, putative uncharac 92.5 0.1 3.5E-06 46.2 4.2 29 87-115 91-121 (262)
496 4dhe_A Probable GTP-binding pr 92.4 0.049 1.7E-06 45.5 2.0 24 92-115 28-51 (223)
497 3llu_A RAS-related GTP-binding 92.4 0.081 2.8E-06 43.5 3.3 24 92-115 19-42 (196)
498 3cpj_B GTP-binding protein YPT 92.2 0.088 3E-06 44.3 3.4 22 94-115 14-35 (223)
499 2iw3_A Elongation factor 3A; a 92.2 0.044 1.5E-06 57.4 1.7 24 92-115 698-721 (986)
500 1ega_A Protein (GTP-binding pr 92.1 0.064 2.2E-06 48.2 2.5 25 91-115 6-30 (301)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.97 E-value=3.9e-30 Score=231.48 Aligned_cols=192 Identities=33% Similarity=0.542 Sum_probs=168.7
Q ss_pred ccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHHhhchhHhHHHHH
Q 023749 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQQAET 154 (278)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~~~ge~~fr~~e~ 154 (278)
....+++...+|.+.++|..|+|+|++||||||+++.||+.+|++++|+|.+++... | +++.++|...|+..|++.|.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~~i~~i~~~~ge~~fr~~e~ 109 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-TSVAEIFEHFGESVFREKET 109 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-SCHHHHHHHHCHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-ccHHHHHHHhCcHHHHHHHH
Confidence 346788888888898999999999999999999999999999999999999999988 6 89999999999999999999
Q ss_pred HHHHHHHcC-CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hc---CCCCCCC----------hHHHHHHH
Q 023749 155 EVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DH---SGFPESE----------VLPQLFAL 219 (278)
Q Consensus 155 ~vl~~l~~~-~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~---r~rp~~~----------~~~~l~~~ 219 (278)
.++.++... .+.||++|+|++.++.++..++.+++|||++|++++.+| .+ +.||... ..+.+..+
T Consensus 110 ~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l 189 (250)
T 3nwj_A 110 EALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTI 189 (250)
T ss_dssp HHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHH
Confidence 999888765 689999999999999999888888999999999999999 43 3455211 24678899
Q ss_pred HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+++|.+.|..||++|++++++.+.+++||+++++++++++|++++...+
T Consensus 190 ~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 190 WDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp HHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999989999999999999999999999999998765
No 2
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.3e-26 Score=199.25 Aligned_cols=164 Identities=21% Similarity=0.294 Sum_probs=144.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
+++.|+|+|++||||||+|+.|++.+|++++|.|+++++..| .++.++|...|+..|+..+..++..+....++||++|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g 102 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG 102 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence 578999999999999999999999999999999999999888 8889999999999999999999999887788999999
Q ss_pred CceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-c-CCCCC---CCh---HHHHHHHHHHhhhccccCcEEEecCcccc
Q 023749 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-D-H-SGFPE---SEV---LPQLFALYKEMRDGYATADVTVSLQKVAS 241 (278)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-~-r~rp~---~~~---~~~l~~~~~er~~~Y~~AD~vId~~~va~ 241 (278)
+|.+....+++.++ .+.+|||++|++++.+| . . +.||. .+. .+.+..+|++|.+.|..||++||
T Consensus 103 gg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Id------ 176 (199)
T 3vaa_A 103 GGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFN------ 176 (199)
T ss_dssp TTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEE------
T ss_pred CcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEE------
Confidence 99988888887776 78999999999999999 4 3 34552 222 46688899999999988999998
Q ss_pred cccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 242 QLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 242 ~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
|+++++++++++|.+.+.+.+
T Consensus 177 ------t~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 177 ------ADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp ------CCCCSSHHHHHHHHHHHHHHT
T ss_pred ------CCCCCHHHHHHHHHHHHHHHh
Confidence 578899999999999998765
No 3
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.95 E-value=1.6e-26 Score=195.13 Aligned_cols=166 Identities=20% Similarity=0.314 Sum_probs=141.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~ 172 (278)
++.|+|+|++||||||+|+.||+++|++++|+|.++++..| .++.+++...|+..|+..+..++..+....++|+++|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 67899999999999999999999999999999999999888 78889999999999999999999998877788999999
Q ss_pred ceeechhHHHhhh-CCcEEEEEcCHHHHHhhh--c--CCCCCC-C--hHHHHHHHHHHhhhcccc-CcEEEecCcccccc
Q 023749 173 GAVQSSANLALLR-HGISLWIDVPPGMVARMD--H--SGFPES-E--VLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL 243 (278)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R~--~--r~rp~~-~--~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~ 243 (278)
+++.++.+++.++ .+++|||++|++++.+|- . +.||.. + ..+.+..++.+|.+.|+. +|++||
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Id-------- 155 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYP-------- 155 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE--------
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEE--------
Confidence 9999888888776 679999999999999992 2 235532 2 346788899999999984 999998
Q ss_pred cccCCCCCCHHHHHHHHHHHhhhcCCCC
Q 023749 244 GYDDLDAVTTEDMTLEVKWLYNASISDP 271 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i~~~~~~~ 271 (278)
|++.++++++++|.+++.+.+++.
T Consensus 156 ----t~~~~~~e~~~~I~~~l~~~~~~~ 179 (185)
T 3trf_A 156 ----TDDLNPRQLATQILVDIKQTYSDL 179 (185)
T ss_dssp ----CTTCCHHHHHHHHHHHSCC-----
T ss_pred ----CCCCCHHHHHHHHHHHHHHHhhhh
Confidence 577899999999999999887653
No 4
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.93 E-value=8.4e-25 Score=184.67 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=136.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~ 172 (278)
+++|+|+|+|||||||+|+.|++++|++++|+|.++++..| ..+.++|...|+..|+..+..++..+....++|+.+|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence 56799999999999999999999999999999999998888 77778888788889998888888877766678888888
Q ss_pred ceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCC---CChHHHHHHHHHHhhhccc-cCcEEEecCccccccccc
Q 023749 173 GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPE---SEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYD 246 (278)
Q Consensus 173 g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~---~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~ 246 (278)
++++++.+++.++.+.+|||++|++++.+| ..| +++. .+..+.+..++.+|.+.|. .+|++||
T Consensus 81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Id----------- 149 (184)
T 2iyv_A 81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVD----------- 149 (184)
T ss_dssp TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEE-----------
T ss_pred cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEE-----------
Confidence 888887777766667999999999999999 444 3442 2345678888888888886 5899998
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCC
Q 023749 247 DLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 247 Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
|++.++++++++|.+++....+
T Consensus 150 -t~~~s~ee~~~~I~~~l~~~~~ 171 (184)
T 2iyv_A 150 -TNRRNPGAVVRHILSRLQVPSP 171 (184)
T ss_dssp -CSSSCHHHHHHHHHTTSCCCCT
T ss_pred -CCCCCHHHHHHHHHHHHhhcCc
Confidence 5668999999999998865443
No 5
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.92 E-value=2.2e-24 Score=181.12 Aligned_cols=157 Identities=19% Similarity=0.325 Sum_probs=131.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
++|+|+|+|||||||+|+.||+++|++++|+|.++++..| .++.+++...|+..|++.+..++..+....++||++|++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 4799999999999999999999999999999999988888 788888888888899988888888887667789988888
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC---CCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccC
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDD 247 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r---~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~D 247 (278)
++.+ .+ ++ .+++|||++|++++.+| ..| .||.....+.+..+|.+|.+.|. .++++||
T Consensus 84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~~~~Id------------ 147 (175)
T 1via_A 84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILN------------ 147 (175)
T ss_dssp GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEE------------
T ss_pred Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcCCEEEE------------
Confidence 7776 44 54 67999999999999999 333 56643326778889999999887 4899998
Q ss_pred CCCCCHHHHHHHHHHHhhhc
Q 023749 248 LDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 248 ts~~tpeeva~~I~~~i~~~ 267 (278)
|++.++++++++|.+.+..-
T Consensus 148 t~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 148 IENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp CTTCCHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 67789999999999998643
No 6
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.91 E-value=5.1e-24 Score=177.57 Aligned_cols=152 Identities=20% Similarity=0.327 Sum_probs=124.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE-EEEeCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCAGN 172 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~-VI~~g~ 172 (278)
.+|+|+|++||||||+|+.||++||++++|+|.++++..| ..+.+++..+|+..|++.+.+++..+...+++ |+++|+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~ 86 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG 86 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5899999999999999999999999999999999998888 78888998889999998888888888766777 888877
Q ss_pred ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC---CCCCC-ChHHHHHHHHHHhhhcccc-CcEEEecCcccccccc
Q 023749 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPES-EVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGY 245 (278)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r---~rp~~-~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~~ 245 (278)
+++.. .+ |+ .+.+|||++|++++.+| ..| +|+.. + .+.+...+.+|.+.|.. +|++||+
T Consensus 87 g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~-~~~~~~~~~~r~~~~~~~a~~~Id~--------- 152 (168)
T 1zuh_A 87 GIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNN-LTQAKELFEKRQALYEKNASFIIDA--------- 152 (168)
T ss_dssp GGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCT-THHHHHHHHHHHHHHHHTCSEEEEG---------
T ss_pred CEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccC-HHHHHHHHHHHHHHHHHHCCEEEEC---------
Confidence 77665 33 55 67999999999999999 443 34421 2 46788888888888874 9999984
Q ss_pred cCCCCCCHHHHHHHHHHHh
Q 023749 246 DDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 246 ~Dts~~tpeeva~~I~~~i 264 (278)
++ ++++++++|.+++
T Consensus 153 ---~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 153 ---RG-GLNNSLKQVLQFI 167 (168)
T ss_dssp ---GG-CHHHHHHHHHHC-
T ss_pred ---CC-CHHHHHHHHHHHh
Confidence 56 9999999998765
No 7
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.91 E-value=1.3e-23 Score=175.22 Aligned_cols=162 Identities=23% Similarity=0.360 Sum_probs=128.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
+++.|+|+|++||||||+++.|++.+|++++|.|.++++..+ ..+..+|...|+..|+..+..++..+....+.++.+|
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~ 81 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATG 81 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECC
Confidence 467899999999999999999999999999999999888777 7778888878888898887778888776677888887
Q ss_pred CceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCC---CCh-HHHHHHHHHHhhhccc-cCcEEEecCcccccc
Q 023749 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPE---SEV-LPQLFALYKEMRDGYA-TADVTVSLQKVASQL 243 (278)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~---~~~-~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~ 243 (278)
++.+..+.+++.++ .+++|||++|++++.+| ..| .+|. .+. .+.+..++.+|.+.|. .+|++||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id-------- 153 (173)
T 1kag_A 82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIR-------- 153 (173)
T ss_dssp TTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC---------
T ss_pred CeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEE--------
Confidence 66666666776666 68999999999999999 433 3442 233 6788889999999887 5899988
Q ss_pred cccCCCCCCHHHHHHHHHHHhhh
Q 023749 244 GYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|++.++++++++|.+++..
T Consensus 154 ----~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 154 ----TDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp --------CHHHHHHHHHHHHC-
T ss_pred ----CCCCCHHHHHHHHHHHHHh
Confidence 5678999999999998864
No 8
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.91 E-value=2.4e-23 Score=173.27 Aligned_cols=160 Identities=22% Similarity=0.315 Sum_probs=131.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~ 172 (278)
.+.|+|+|++||||||+|+.|++.+|++++|+|.++++..| ..+.+++...|+..|+..+..++..+. ..++||++|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~ 79 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG 79 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence 36799999999999999999999999999999999988877 777788877788888888888887776 5678888887
Q ss_pred ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h--cC--CCCCCC---hHHHHHHHHHHhhhccccCcEEEecCcccccc
Q 023749 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D--HS--GFPESE---VLPQLFALYKEMRDGYATADVTVSLQKVASQL 243 (278)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~--~r--~rp~~~---~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~ 243 (278)
+.+..+.+++.++ .+++|||++|++++.+| . .| .++... ..+.+..+|.++.+.|..+|++||
T Consensus 80 ~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id-------- 151 (173)
T 1e6c_A 80 GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVV-------- 151 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEE--------
T ss_pred cEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEE--------
Confidence 7777777777665 68999999999999999 6 66 344322 234577788888777766899998
Q ss_pred cccCCCCCCHHHHHHHHHHHhhh
Q 023749 244 GYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 244 ~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+++.++++++++|.+++..
T Consensus 152 ----~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 152 ----DATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp ----ETTSCHHHHHHHHHHHTTC
T ss_pred ----CCCCCHHHHHHHHHHHhcc
Confidence 4668999999999988753
No 9
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.90 E-value=4.9e-23 Score=170.86 Aligned_cols=159 Identities=25% Similarity=0.419 Sum_probs=129.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g 173 (278)
|.|+|+|++||||||+|+.|++.+|++++|+|.+.++..| ..+.+++...|+..|+..+..++..+...+.+||++|++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 5799999999999999999999999999999999988888 778888888888888888888888877567788887766
Q ss_pred eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCC-ChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCC
Q 023749 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPES-EVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLD 249 (278)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~-~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts 249 (278)
....+.+++.++ .+++|||++|++++.+| ..| .|+.. +..+.+...|.++.+.|..+|++| + +
T Consensus 80 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~------------~ 146 (168)
T 2pt5_A 80 LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-K------------G 146 (168)
T ss_dssp HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-E------------C
T ss_pred EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-C------------C
Confidence 566666666666 68999999999999999 433 35431 234567777887777675689988 4 4
Q ss_pred CCCHHHHHHHHHHHhhh
Q 023749 250 AVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 250 ~~tpeeva~~I~~~i~~ 266 (278)
..++++++++|.+++.+
T Consensus 147 ~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 147 EKPPEEVVKEILLSLEG 163 (168)
T ss_dssp SSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 58999999999999875
No 10
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.83 E-value=3.4e-20 Score=160.98 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=109.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhH--hH-----------------
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ----------------- 150 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~--fr----------------- 150 (278)
+.+.|.|.|++||||||+|+.||++||++|+| +++++.... +.+ .+.|...++.. |+
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYS-KEVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCC-HHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 45789999999999999999999999999999 777665432 134 24555555543 22
Q ss_pred -HHHHHHHHHHH--cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHHHHHHHhhh
Q 023749 151 -QAETEVLKQLS--SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLFALYKEMRD 225 (278)
Q Consensus 151 -~~e~~vl~~l~--~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~~~~~er~~ 225 (278)
..+.+++.+++ ..+++|+...++.++.+.+ ++++.|||++|++++.+| ...+++.++..+.+.++..+|.+
T Consensus 83 ~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~ 158 (201)
T 3fdi_A 83 AIRQFNFIRKKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKV 158 (201)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46778888898 7778888643332221211 146899999999999999 33456655566778777788877
Q ss_pred cccc-----------CcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 226 GYAT-----------ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 226 ~Y~~-----------AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
+|+. +|++|| |+.++++++++.|++++...
T Consensus 159 ~y~~~~~~~~~~~~~~dl~Id------------t~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 159 YHNFYCESKWGDSRTYDICIK------------IGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHCSSCTTBGGGCSEEEE------------ESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCCCcccCCEEEE------------CCCCCHHHHHHHHHHHHHHh
Confidence 7653 689998 78999999999999998764
No 11
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.81 E-value=7.1e-20 Score=161.92 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=112.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH--hCCCChHHHHHhhchh-----------------------
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK----------------------- 147 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~--~g~~~i~ei~~~~ge~----------------------- 147 (278)
.++|.|.|++||||||+|+.||++||++++|.|.+.+.. .| .+. +.+...++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence 468999999999999999999999999999965543321 22 221 222222211
Q ss_pred --------HhHHHHHHHHHHHHcCCCEEEE-eCCceeec--hhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHH
Q 023749 148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLP 214 (278)
Q Consensus 148 --------~fr~~e~~vl~~l~~~~~~VI~-~g~g~v~~--~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~ 214 (278)
.....+.+++.+++..+++||. +|+++++. +.+ +++++|||++|++++.+| +..+++.++..+
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~ 167 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVDCIDEERAKR 167 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHhcCCCHHHHHH
Confidence 1123455677888877788887 66565552 211 236899999999999999 444666556677
Q ss_pred HHHHHHHHhhhccc-----------cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 215 QLFALYKEMRDGYA-----------TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 215 ~l~~~~~er~~~Y~-----------~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
.+.+.+++|.++|+ .+|++|| |+.++++++++.|.+++...
T Consensus 168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~Id------------T~~l~~eevv~~I~~~i~~~ 219 (223)
T 3hdt_A 168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPIN------------TTKLTLEETAELIKAYIRLK 219 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEE------------CTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEE------------CCCCCHHHHHHHHHHHHHHh
Confidence 88888899998886 6899998 78999999999999999753
No 12
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.77 E-value=2.6e-17 Score=137.42 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=105.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH-----H-HhCCCChHHHHHhhchhHhHHHHHHHHHHHH-cC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SM 163 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~-~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-~~ 163 (278)
.+|..|+|+|++||||||+++.|++.+|++++|.|.+.+ + ..| ..+.+ ..+...++.++.. +..+. ..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~-~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDA-AFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHH-HHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCCc---cccccHHHHHHHH-HHHHHhcC
Confidence 457899999999999999999999999999999998742 2 234 33222 2234455555543 33333 33
Q ss_pred CCEEEEeCCceeechhHHHhhh-C--C-cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhc-cc-cCcEEEec
Q 023749 164 GRLVVCAGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG-YA-TADVTVSL 236 (278)
Q Consensus 164 ~~~VI~~g~g~v~~~~~~~~L~-~--~-~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~-Y~-~AD~vId~ 236 (278)
..+|++++. ..+.+++.++ . + .+|||++|++++.+| ..|+....+ ...+..++.++.+. |. .+|++||
T Consensus 81 ~~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id- 155 (175)
T 1knq_A 81 KVSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK-TQMLVTQFETLQEPGADETDVLVVD- 155 (175)
T ss_dssp SEEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCC-HHHHHHHHHHCCCCCTTCTTEEEEE-
T ss_pred CcEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCc-hHHHHHHHHhhhCcccCCCCeEEEe-
Confidence 446666542 3455666665 2 3 699999999999999 555422212 34566666665555 55 5899998
Q ss_pred CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
++ .++++++++|.+++..
T Consensus 156 -----------~~-~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 156 -----------ID-QPLEGVVASTIEVIKK 173 (175)
T ss_dssp -----------CS-SCHHHHHHHHHHHHHC
T ss_pred -----------CC-CCHHHHHHHHHHHHhc
Confidence 34 7999999999998853
No 13
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.76 E-value=1.5e-17 Score=136.73 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=99.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CC----hHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ES----AAKAFRESDEKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~----i~ei~~~~ge~~fr~~e~~vl~~l~~~~ 164 (278)
+.|+|+|+|||||||+|+.| +.+|+++++.|+++++.... .. ...++...++..+.......+.. ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 68999999999999999999 99999999999988775420 01 11222223444454433332211 334
Q ss_pred CEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHHHHH-----hhhccccCcE
Q 023749 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYKE-----MRDGYATADV 232 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~~~e-----r~~~Y~~AD~ 232 (278)
..||.+| . ....+++.++ ..++|||++|++++.+| ..|+++.. ...+.+.+.+.. ....+..||+
T Consensus 79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~ 155 (179)
T 3lw7_A 79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADY 155 (179)
T ss_dssp SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSE
T ss_pred CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCE
Confidence 4566655 2 4455555443 33799999999999999 66766421 223344333311 1122336999
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+|++ ++ ++++++++|.+++...+
T Consensus 156 vId~------------~~-~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 156 IITN------------DS-NYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp EEEC------------CS-CHHHHHHHHHHHHHHHC
T ss_pred EEEC------------CC-CHHHHHHHHHHHHHHHh
Confidence 9984 34 99999999999987654
No 14
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.74 E-value=9.1e-17 Score=137.78 Aligned_cols=156 Identities=11% Similarity=0.043 Sum_probs=109.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~------~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
+|..|+|+|++||||||+++.|++.+|+.+++.|.+... ..| ..+.+ ......+...+..+...+.....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~g~~ 103 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRG-IPLTD---EDRWPWLRSLAEWMDARADAGVS 103 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcC-CCCCC---cccccHHHHHHHHHHHHHhcCCC
Confidence 588999999999999999999999999999999987421 223 22211 11223445555554444444456
Q ss_pred EEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcc
Q 023749 166 LVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKV 239 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~v 239 (278)
.|++++ ...+..++.++ ...+|||++|++++.+| ..|+.... ..+.+..+++++.+.|. .++++||
T Consensus 104 viid~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~~~~~~~~~~~~~~Id---- 175 (200)
T 4eun_A 104 TIITCS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM-PASLLQSQLATLEALEPDESGIVLD---- 175 (200)
T ss_dssp EEEEEC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS-CGGGHHHHHHHCCCCCTTSCEEEEE----
T ss_pred EEEEch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC-CHHHHHHHHHHhCCCCCCCCeEEEE----
Confidence 677654 23455555554 24789999999999999 55533222 24567888899888887 4899998
Q ss_pred cccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 240 ASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 240 a~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
++ .++++++++|.+++....
T Consensus 176 --------~~-~~~~e~~~~I~~~l~~~~ 195 (200)
T 4eun_A 176 --------LR-QPPEQLIERALTWLDIAP 195 (200)
T ss_dssp --------TT-SCHHHHHHHHHHHHCCCG
T ss_pred --------CC-CCHHHHHHHHHHHHHhcc
Confidence 33 499999999999997543
No 15
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.73 E-value=1.6e-17 Score=138.68 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=96.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHHHHhCC-------CChHHHHHhhchhHhHHHHHHH---HHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG-------ESAAKAFRESDEKGYQQAETEV---LKQ 159 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~~~~g~-------~~i~ei~~~~ge~~fr~~e~~v---l~~ 159 (278)
+++.|+|+|+|||||||+|+.|++.++.++++ .|.+++...+. .++.+.+...++..|+..+..+ +..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 57899999999999999999999999988765 78777654331 0111111122344566555433 344
Q ss_pred HHcCCCEEEEeCCceee-----chhHHHhhh-CC-cEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhccccC
Q 023749 160 LSSMGRLVVCAGNGAVQ-----SSANLALLR-HG-ISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYATA 230 (278)
Q Consensus 160 l~~~~~~VI~~g~g~v~-----~~~~~~~L~-~~-~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~~A 230 (278)
+...+..||.++ .+. .+.+++.++ .+ .+|||++|++++.+| ..|+ ++.. ....+++. ...|..+
T Consensus 82 ~~~~g~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~~----~~~~~~~~-~~~~~~~ 154 (178)
T 1qhx_A 82 MARAGARIIIDD--VFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAG----MAAKQAYV-VHEGVEY 154 (178)
T ss_dssp HHHTTCEEEEEE--CCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTT----HHHHHTTG-GGTTCCC
T ss_pred HHhcCCeEEEEe--ccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcccc----hhhhhchh-hccCCCC
Confidence 444444444332 221 123344454 34 579999999999999 5443 3322 11222222 1223458
Q ss_pred cEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
|++|| |++.+|++++++|.+.+.
T Consensus 155 d~~id------------t~~~~~~~~~~~I~~~l~ 177 (178)
T 1qhx_A 155 DVEVD------------TTHKESIECAWAIAAHVV 177 (178)
T ss_dssp SEEEE------------TTSSCHHHHHHHHHTTCC
T ss_pred cEEEE------------CCCCCHHHHHHHHHHHhc
Confidence 99998 788999999999987653
No 16
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.72 E-value=2.1e-18 Score=146.39 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=94.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH-hCCceecCchHHHHHhCCCChHHHHHhhchhHhH--HHHHHHHH---HHH-cC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ--QAETEVLK---QLS-SM 163 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~-Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr--~~e~~vl~---~l~-~~ 163 (278)
.++++|+|+|+|||||||+|+.|++. +|++++|+|+++++........+.+ +..|. ..+..++. .+. ..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~l~~~~~~~ 83 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTEL----DTHIIEEKDEDRLLDFMEPIMVSR 83 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC----------CCCCCHHHHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHh----hhcccCCCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999999999 7999999999988742101111111 11121 11222222 222 22
Q ss_pred CCEEEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh-hcCCCCCCChHHH-----HHHHHHHhhhccccCcEEE
Q 023749 164 GRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESEVLPQ-----LFALYKEMRDGYATADVTV 234 (278)
Q Consensus 164 ~~~VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~-----l~~~~~er~~~Y~~AD~vI 234 (278)
+..|+. ..+...++ .+.+|||++|++++.+| ..|++........ +..++.+|.+.|. +|++|
T Consensus 84 g~~vi~--------~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~~~vi 154 (184)
T 1y63_A 84 GNHVVD--------YHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-DDIVL 154 (184)
T ss_dssp SEEEEE--------CSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEE
T ss_pred CCEEEe--------CchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-cCcEE
Confidence 222222 11222232 56899999999999999 5554331111112 3444678888886 68888
Q ss_pred ecCcccccccccCCCCCCHHHH---HHHHHHHhhhcCC
Q 023749 235 SLQKVASQLGYDDLDAVTTEDM---TLEVKWLYNASIS 269 (278)
Q Consensus 235 d~~~va~~~~~~Dts~~tpeev---a~~I~~~i~~~~~ 269 (278)
+ |++.+++++ +++|.+.+.....
T Consensus 155 ~------------~n~~~~~~~~~~v~~i~~~l~~~~~ 180 (184)
T 1y63_A 155 V------------RENDTLEQMAATVEEIRERVEVLKV 180 (184)
T ss_dssp E------------EECSSHHHHHHHHHHHHHHHHHHC-
T ss_pred E------------CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 7 346799999 7777777765543
No 17
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.72 E-value=1.8e-16 Score=130.83 Aligned_cols=146 Identities=14% Similarity=0.278 Sum_probs=100.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC-
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN- 172 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~- 172 (278)
+.|+|+|+|||||||+|+.|++.+|++++|.|.+...... +..+|. . ...+.. +..|+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~---~~~~~~--------~-----~~~l~~-~~~vi~dr~~ 64 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG---NEKLFE--------H-----FNKLAD-EDNVIIDRFV 64 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC---HHHHHH--------H-----HHHHTT-CCSEEEESCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH---HHHHHH--------H-----HHHHHh-CCCeEEeeee
Confidence 4799999999999999999999999999999988765331 222221 1 112222 223333210
Q ss_pred ------------ceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCC--hHHHHHHHHHHhhhccccCcE
Q 023749 173 ------------GAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPESE--VLPQLFALYKEMRDGYATADV 232 (278)
Q Consensus 173 ------------g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~--~~~~l~~~~~er~~~Y~~AD~ 232 (278)
.......++..+. .+++|||++|++++.+| ..|+++..+ ..+.+.+.|+++.+.|..+++
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (173)
T 3kb2_A 65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTY 144 (173)
T ss_dssp HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEE
Confidence 0111223333332 56899999999999999 555555433 345677788888888877888
Q ss_pred EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
+|| ++++++++++++|.+.++...
T Consensus 145 ~id------------~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 145 SWD------------TGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp EEE------------TTTSCHHHHHHHHHHHHHHGG
T ss_pred EEE------------CCCCCHHHHHHHHHHHHhCCC
Confidence 998 567899999999999998754
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.71 E-value=5.5e-17 Score=136.15 Aligned_cols=159 Identities=14% Similarity=0.201 Sum_probs=99.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCC----ChHHHHHhhchhHhHHHHHHHHHHHHc--CC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSS--MG 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~----~i~ei~~~~ge~~fr~~e~~vl~~l~~--~~ 164 (278)
+++.|+|+|++||||||+|+.|++.+|++++|.|+++++.. ++. .+.+++.. |...+.+....++..... .+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~ 83 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQG 83 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCC
Confidence 35689999999999999999999999999999999877653 212 23344432 333334444444444332 23
Q ss_pred CEEEEeCCceeechhHHHhh----h----CCcEEEEEcCHHHHHhh-hcC----CCCCCC---hHHHHHHHHHHhhhc--
Q 023749 165 RLVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMRDG-- 226 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L----~----~~~vV~L~a~~e~l~~R-~~r----~rp~~~---~~~~l~~~~~er~~~-- 226 (278)
..+|..| .+....++..+ . .+++|||++|++++.+| ..| +++... ....+..+++++.+.
T Consensus 84 ~~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~ 161 (194)
T 1qf9_A 84 KNFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID 161 (194)
T ss_dssp CCEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred CCEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence 3444443 22233333222 2 35799999999999999 333 233222 223344455555443
Q ss_pred -cccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 227 -YATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 227 -Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+.+| ++||+ + .++++++++|.+++.+
T Consensus 162 ~~~~~~~~~~id~------------~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 162 HYNKFDKVKIIPA------------N-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHTTCEEEEEC------------S-SCHHHHHHHHHHHHHH
T ss_pred HHHhCCCEEEEEC------------C-CCHHHHHHHHHHHHHH
Confidence 34577 67773 3 8999999999999875
No 19
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.71 E-value=8.6e-17 Score=137.55 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=99.1
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhchhHhHHHHHHHHHHHHc--
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS-- 162 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-~g~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~-- 162 (278)
...++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++ ..+.+++. .|+..|++....++.+...
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~ 95 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNNP 95 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhcc
Confidence 357889999999999999999999999999999999988763 221 12333333 2433455444444444332
Q ss_pred --CCCEEEEeCCceeechh---HH-Hhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHH----HHHHHHHhhh-
Q 023749 163 --MGRLVVCAGNGAVQSSA---NL-ALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQ----LFALYKEMRD- 225 (278)
Q Consensus 163 --~~~~VI~~g~g~v~~~~---~~-~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~----l~~~~~er~~- 225 (278)
...+|+ .|. ..... .+ ..+. .+++|||++|++++.+| ..|+++... .+. +...+..+.+
T Consensus 96 ~~~~~vIl-dg~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~-~e~~~~r~~~~~~~~~~~ 171 (201)
T 2cdn_A 96 DAANGFIL-DGY--PRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDT-DDVILNRMKVYRDETAPL 171 (201)
T ss_dssp GGTTCEEE-ESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCS-HHHHHHHHHHHHHHTTTH
T ss_pred cCCCeEEE-ECC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhhHHH
Confidence 223333 321 11111 11 1232 46899999999999999 666665322 222 3333344333
Q ss_pred --ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 226 --GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 226 --~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
.|..++++||+ +.++++++++|.+.+.
T Consensus 172 ~~~~~~~~~~Id~-------------~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 172 LEYYRDQLKTVDA-------------VGTMDEVFARALRALG 200 (201)
T ss_dssp HHHTTTTEEEEEC-------------CSCHHHHHHHHHHHTT
T ss_pred HHHhcCcEEEEeC-------------CCCHHHHHHHHHHHHc
Confidence 23346778873 4799999999998874
No 20
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.70 E-value=5.3e-17 Score=137.15 Aligned_cols=161 Identities=13% Similarity=0.170 Sum_probs=99.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhchhHhHHHHHHHHHH----HHc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQ----LSS 162 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~----~~i~ei~~~~ge~~fr~~e~~vl~~----l~~ 162 (278)
+++.|+|+|+|||||||+|+.|++.+|++++|.|++++... ++ ..+.+++. .|+..+.+.....+.+ ...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999887632 10 23344443 2443333332222222 222
Q ss_pred CCCEEEEeCCceeechhHHHh----hh-CCcEEEEEcCHHHHHhh-hcC----CCCCCC---hHHHHHHHHHHhhhc---
Q 023749 163 MGRLVVCAGNGAVQSSANLAL----LR-HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMRDG--- 226 (278)
Q Consensus 163 ~~~~VI~~g~g~v~~~~~~~~----L~-~~~vV~L~a~~e~l~~R-~~r----~rp~~~---~~~~l~~~~~er~~~--- 226 (278)
.+..||..|. .......+. +. .+++|||++|++++.+| ..| ++.... ....+..++.++.+.
T Consensus 87 ~~~~vi~d~~--~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 164 (196)
T 2c95_A 87 TSKGFLIDGY--PREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF 164 (196)
T ss_dssp TCSCEEEESC--CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCcEEEeCC--CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444431 222222222 23 67899999999999999 333 222211 223455556665553
Q ss_pred cccCcE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 227 YATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 227 Y~~AD~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
|..++. +|| + +.++++++++|.+++.+.+
T Consensus 165 ~~~~~~~~~Id------------~-~~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 165 YEKRGIVRKVN------------A-EGSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHHHTCEEEEE------------C-CSCHHHHHHHHHHHHHHHC
T ss_pred HHhcCcEEEEE------------C-CCCHHHHHHHHHHHHHHhc
Confidence 444553 466 2 4899999999999987654
No 21
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.70 E-value=1.2e-16 Score=134.33 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=99.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-~g~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
+|+.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++ ..+.+++.. |+..++.....++...... +
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-~- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-R- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS-E-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC-C-
Confidence 5789999999999999999999999999999999888764 221 233444543 4444555555555555433 2
Q ss_pred EEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCCCh---HHHHHHHHHHhhh---c
Q 023749 167 VVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS----GFPESEV---LPQLFALYKEMRD---G 226 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~---~~~l~~~~~er~~---~ 226 (278)
+|..| ......+.. .+. .+.+|||++|++++.+| ..| +++.... ...+...+.++.+ .
T Consensus 80 ~i~dg--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~ 157 (186)
T 3cm0_A 80 VIFDG--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY 157 (186)
T ss_dssp EEEES--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 222222221 222 35799999999999999 433 4543221 1233444444333 3
Q ss_pred cccC--cEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 227 YATA--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 227 Y~~A--D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
|+.+ +++||+ +.++++++++|.+.+.
T Consensus 158 ~~~~~~~~~id~-------------~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 158 YEARGVLKRVDG-------------LGTPDEVYARIRAALG 185 (186)
T ss_dssp HHHTTCEEEEEC-------------CSCHHHHHHHHHHHHT
T ss_pred HHhcCcEEEEEC-------------CCCHHHHHHHHHHHhc
Confidence 4434 467772 4799999999998763
No 22
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.70 E-value=1.9e-17 Score=139.08 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=97.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHH--HHHH---HHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA--ETEV---LKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~--e~~v---l~~l~~~~~~ 166 (278)
+++.|+|+|+|||||||+++.|++.+|++++++|+++++... +...++..++.. +..+ +......+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-------YDGYDEEYDCPILDEDRVVDELDNQMREGGV 82 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-------EEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-------hhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence 467899999999999999999999999999999998876521 111222222110 1111 2222222444
Q ss_pred EEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh-hcCCCCCCC-----hHHHHHHHHHHhhhccccCcEEEecC
Q 023749 167 VVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESE-----VLPQLFALYKEMRDGYATADVTVSLQ 237 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~-----~~~~l~~~~~er~~~Y~~AD~vId~~ 237 (278)
|+... +...++ .+.+|||++|++++.+| ..|++.... ..+.+..++.+|.+.|. +|++|+
T Consensus 83 vv~~~--------~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~i~-- 151 (180)
T 3iij_A 83 IVDYH--------GCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIVHQ-- 151 (180)
T ss_dssp EEECS--------CCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEE--
T ss_pred EEEec--------hhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEE--
Confidence 54321 111222 57899999999999999 655543111 12345677888888887 688888
Q ss_pred cccccccccCCCCCCHHHH---HHHHHHHhhhcC
Q 023749 238 KVASQLGYDDLDAVTTEDM---TLEVKWLYNASI 268 (278)
Q Consensus 238 ~va~~~~~~Dts~~tpeev---a~~I~~~i~~~~ 268 (278)
|++.+++++ +++|++++.+..
T Consensus 152 ----------~~~~~~~ev~~~v~~i~~~l~~~~ 175 (180)
T 3iij_A 152 ----------LPSNKPEELENNVDQILKWIEQWI 175 (180)
T ss_dssp ----------EECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567999999 677777766543
No 23
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=134.86 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=98.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--C---CCChHHHHHhhchhHhHHHHHHHHH----HHHc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLK----QLSS 162 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g---~~~i~ei~~~~ge~~fr~~e~~vl~----~l~~ 162 (278)
+++.|+|+|+|||||||+|+.|++.+|++++|+|+++++.. + +..+.+++. .|+..+.+.....+. ....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLG 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccc
Confidence 46799999999999999999999999999999999876644 1 022334443 233333322222222 2222
Q ss_pred CCCEEEEeCCceeechhHHHhh-----hCCcEEEEEcCHHHHHhh-hcCCCCCC-------ChHHHHHHHHHHhhh---c
Q 023749 163 MGRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGFPES-------EVLPQLFALYKEMRD---G 226 (278)
Q Consensus 163 ~~~~VI~~g~g~v~~~~~~~~L-----~~~~vV~L~a~~e~l~~R-~~r~rp~~-------~~~~~l~~~~~er~~---~ 226 (278)
.+..||..| .+....++..+ ..+++|||++|++++.+| ..|+.+.. .....+..++.++.+ .
T Consensus 90 ~~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 167 (199)
T 2bwj_A 90 DTRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAY 167 (199)
T ss_dssp SCSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334455443 33333333222 257899999999999999 55543211 111223334555543 4
Q ss_pred ccc-Cc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 227 YAT-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 227 Y~~-AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
|.. ++ ++|| ++.++++++++|.+++...
T Consensus 168 ~~~~~~~~~id-------------~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 168 YETKTQLHKIN-------------AEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHSEEEEEE-------------TTSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEE-------------CCCCHHHHHHHHHHHHHHh
Confidence 543 34 5676 3579999999999998754
No 24
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.68 E-value=1.7e-16 Score=132.84 Aligned_cols=153 Identities=12% Similarity=0.162 Sum_probs=90.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-cCchHHHHHhCCCChHHHHHhhchhHhH------HHHHHHHHHHHc-C
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGGESAAKAFRESDEKGYQ------QAETEVLKQLSS-M 163 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-D~D~li~~~~g~~~i~ei~~~~ge~~fr------~~e~~vl~~l~~-~ 163 (278)
+++.|+|+|+|||||||+|+.|++.+|++++ |.+.+ | ..+.+++. .|...|+ +....++..+.. .
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----g-~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----G-QALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREA 76 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----H-HHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----H-HHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999998 53221 1 12222222 2222222 212233444333 2
Q ss_pred CCEEEEeCCceeec----hhHHHhhh-CCc---EEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhccccCcEE
Q 023749 164 GRLVVCAGNGAVQS----SANLALLR-HGI---SLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYATADVT 233 (278)
Q Consensus 164 ~~~VI~~g~g~v~~----~~~~~~L~-~~~---vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~~AD~v 233 (278)
+..||..+ .... ...++.++ .+. .|||++|++++.+| ..|+ ++.. .+.+..+++++.+. ..++ +
T Consensus 77 g~~vi~d~--~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~--~~~~~~~~~~~~~~-~~~~-~ 150 (183)
T 2vli_A 77 AGPLIVPV--SISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVN--VGTVEDRLNELRGE-QFQT-H 150 (183)
T ss_dssp SSCEEEEE--CCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CC--HHHHHHHHHHHTSG-GGCS-E
T ss_pred CCcEEEee--eccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchh--HHHHHHHHHhhccc-ccce-E
Confidence 44455332 1111 22333444 444 39999999999999 5443 4422 35676777776654 4355 7
Q ss_pred EecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
|| +++.++++++++|.+++...+.
T Consensus 151 Id------------~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 151 ID------------TAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp EE------------CTTCCHHHHHHHHHHHHTCCCC
T ss_pred ee------------CCCCCHHHHHHHHHHHHHHhcC
Confidence 77 5678999999999999988774
No 25
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.68 E-value=3e-16 Score=140.49 Aligned_cols=156 Identities=10% Similarity=0.048 Sum_probs=104.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH---hCCcee--cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~---Lg~~~i--D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
.++.|+|+|+|||||||+|+.|++. +|++++ +.|.+.+...+ |...++..++..+...+...... ..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~ 74 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YW 74 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CE
Confidence 3678999999999999999999998 799988 88887654332 23345566666655556655544 45
Q ss_pred EEEeCCceeechhHHHhh----h----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh---hhcc--ccCcE
Q 023749 167 VVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM---RDGY--ATADV 232 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L----~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er---~~~Y--~~AD~ 232 (278)
||..+ .......+..+ + .+.+|||++|++++.+| ..|+++.. .+.+..++..+ .+.| ..+++
T Consensus 75 vIiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~--~~~l~~~~~~~e~~~~~~~~~~~~~ 150 (260)
T 3a4m_A 75 VIVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP--NEVIKKMYEKFDEPGKKYKWDEPFL 150 (260)
T ss_dssp EEECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSC--HHHHHHHHHHCCCTTSSCGGGCCSE
T ss_pred EEEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCC--HHHHHHHHHHhcCccccCCCCCCEE
Confidence 55443 22233333322 1 25799999999999999 66665422 34455544433 3334 35788
Q ss_pred EEecCcccccccccCCCC-CCHHHHHHHHHHHhhhcCCCC
Q 023749 233 TVSLQKVASQLGYDDLDA-VTTEDMTLEVKWLYNASISDP 271 (278)
Q Consensus 233 vId~~~va~~~~~~Dts~-~tpeeva~~I~~~i~~~~~~~ 271 (278)
+||. ++ .++++++++|.+.+.....++
T Consensus 151 ~Id~------------~~~~~~~ei~~~I~~~l~~~~~~~ 178 (260)
T 3a4m_A 151 IIDT------------TKDIDFNEIAKKLIEKSKEIPKFY 178 (260)
T ss_dssp EEET------------TSCCCHHHHHHHHHHHHTSCCCC-
T ss_pred EEeC------------CCCCCHHHHHHHHHhcccCCCCcc
Confidence 9984 44 689999999999998765543
No 26
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.67 E-value=1.9e-17 Score=143.07 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=97.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hC-CCChHHH-------HH----------hhchh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AG-GESAAKA-------FR----------ESDEK 147 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g-~~~i~ei-------~~----------~~ge~ 147 (278)
+++.|+|+|++||||||+|+.|++.+|++++|+|.+++.. .| ...+.++ |. ..|+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 4678999999999999999999999999999999998652 12 1233333 21 12332
Q ss_pred HhHHHH------------------HHHH---HHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-
Q 023749 148 GYQQAE------------------TEVL---KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-D- 203 (278)
Q Consensus 148 ~fr~~e------------------~~vl---~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~- 203 (278)
.++.++ ..+. ..+...+.+|+. |... ....++ .+++|||++|++++.+| .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~-g~~~-----~~~~~~~~~~vi~l~a~~e~~~~R~~~ 155 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMD-GRDI-----GTVVLPDADLKVYMIASVEERAERRYK 155 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEE-ESSC-----CCCCCTTCSEEEEEECCHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEE-cCCc-----cceecCCCCEEEEEECCHHHHHHHHHH
Confidence 222110 0010 112233334443 2110 011234 57899999999999998 2
Q ss_pred ---cCCCCCCChHHHHHHHHHHhh---------hccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 204 ---HSGFPESEVLPQLFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 204 ---~r~rp~~~~~~~l~~~~~er~---------~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.|++. ...+.+.+.+.+|. +.|..+| ++|| |+++++++++++|.+++..
T Consensus 156 ~~~~r~~~--~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id------------~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 156 DNQLRGIE--SNFEDLKRDIEARDQYDMNREISPLRKADDAVTLD------------TTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp HHHHTTCC--CCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEE------------CTTCCHHHHHHHHHHHHHT
T ss_pred HHHhcCcc--cCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEE------------CCCCCHHHHHHHHHHHHhc
Confidence 34442 12455666666554 6666666 8998 5678999999999998864
No 27
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.67 E-value=5.1e-16 Score=132.78 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=98.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhchhHhHHHHHHHHHHH-HcCCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQL-SSMGR 165 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~------~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l-~~~~~ 165 (278)
++.|+|+|++||||||+|+.|++.+|++++|.|.+... ..| ....+ ......++. +... .....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~-----l~~~~~~~~~ 88 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEG-IPLTD---DDRWPWLAA-----IGERLASREP 88 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHT-CCCCH---HHHHHHHHH-----HHHHHTSSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcC-CCCCc---hhhHHHHHH-----HHHHHhcCCC
Confidence 56899999999999999999999999999999987522 112 11111 011122222 2222 23344
Q ss_pred EEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCc
Q 023749 166 LVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQK 238 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~ 238 (278)
+|++++. .....++.+. ...+|||++|++++.+| ..|+....+ .+.+..+++.+.+.|. .++++||+
T Consensus 89 vivd~~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Id~-- 162 (202)
T 3t61_A 89 VVVSCSA---LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP-SSLLQTQLETLEDPRGEVRTVAVDV-- 162 (202)
T ss_dssp CEEECCC---CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC-HHHHHHHHHHCCCCTTSTTEEEEES--
T ss_pred EEEECCC---CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC-HHHHHHHHHhcCCCCCCCCeEEEeC--
Confidence 5555332 2344444443 24899999999999999 444321112 4667777887777665 57889983
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+ .++++++++|.+++.+
T Consensus 163 ----------~-~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 163 ----------A-QPLAEIVREALAGLAR 179 (202)
T ss_dssp ----------S-SCHHHHHHHHHHHHHH
T ss_pred ----------C-CCHHHHHHHHHHHHHH
Confidence 4 8999999999999864
No 28
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.67 E-value=3.5e-16 Score=135.94 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=73.4
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhchhHhHHHHHHHHHHHHcC
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~ 163 (278)
..+++.|+|+|+|||||||+|+.||+.+|++++++|+++++. .| ..+.+++.. |+..+++....++......
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~ 79 (217)
T 3be4_A 2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDL 79 (217)
T ss_dssp GGGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999998865 23 445555543 5445566555555443221
Q ss_pred ---CCEEEEeCCceeec---hhHHH-hhh-----CCcEEEEEcCHHHHHhh
Q 023749 164 ---GRLVVCAGNGAVQS---SANLA-LLR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 164 ---~~~VI~~g~g~v~~---~~~~~-~L~-----~~~vV~L~a~~e~l~~R 202 (278)
+..+|..| +... ...+. .+. .+++|||++|++++.+|
T Consensus 80 ~~~~~~~i~dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (217)
T 3be4_A 80 GVCVNGFVLDG--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIER 128 (217)
T ss_dssp TTTTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred cccCCCEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 22333333 2111 11222 221 35899999999999999
No 29
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.67 E-value=9.8e-16 Score=128.67 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=96.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CC----ChHHHHHhhchhHhHHHHHHHHH----HH-
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GE----SAAKAFRESDEKGYQQAETEVLK----QL- 160 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~----~i~ei~~~~ge~~fr~~e~~vl~----~l- 160 (278)
+++.|+|+|+|||||||+|+.|++.+|+++++.|+++++... +. .+.+++. .|+..+.+....++. ..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence 578899999999999999999999999999999999876531 11 1223332 343333332222221 11
Q ss_pred H--cCCCEEEEeCCceeechhHHH----hhh----CCcEEEEEcCHHHHHhh-hcC----CCCCCCh---HHHHHHHHHH
Q 023749 161 S--SMGRLVVCAGNGAVQSSANLA----LLR----HGISLWIDVPPGMVARM-DHS----GFPESEV---LPQLFALYKE 222 (278)
Q Consensus 161 ~--~~~~~VI~~g~g~v~~~~~~~----~L~----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~---~~~l~~~~~e 222 (278)
. ..+..||..| .+....+++ .+. .+++|||++|++++.+| ..| +|+.... ...+...+..
T Consensus 81 ~~~~~~~~vi~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~ 158 (196)
T 1tev_A 81 AANAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 158 (196)
T ss_dssp HHCTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1 1234455433 333333322 111 35799999999999999 332 4553321 1233334444
Q ss_pred hhh---ccc-cCcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 223 MRD---GYA-TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 223 r~~---~Y~-~AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+.+ .|. .+++ +|| ++ .++++++++|.+.+.+
T Consensus 159 ~~~~~~~y~~~~~~~~id------------~~-~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 159 TKPIIDLYEEMGKVKKID------------AS-KSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHTTCEEEEE------------TT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEE------------CC-CCHHHHHHHHHHHHHh
Confidence 443 455 4665 777 34 8999999999998865
No 30
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.66 E-value=7.8e-16 Score=133.66 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=99.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhchh----HhHH-HHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEK----GYQQ-AETEVLKQL 160 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i~ei~~~~ge~----~fr~-~e~~vl~~l 160 (278)
.++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .| ..+.+++.. |+. .+.. ++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 81 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG-KRAKEFMEK-GQLVPDEIVVNMVKERLRQPD 81 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHHSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh-HHHHHHHHc-CCcCCHHHHHHHHHHHHhhcc
Confidence 4678999999999999999999999999999999988762 22 233444432 221 1222 222222222
Q ss_pred HcCCCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCC------C----------------C----
Q 023749 161 SSMGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG------F----------------P---- 208 (278)
Q Consensus 161 ~~~~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~------r----------------p---- 208 (278)
...+.+|+ .| +.....+...+. .+++|||++|++++.+| ..|. + +
T Consensus 82 ~~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r 158 (222)
T 1zak_A 82 AQENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR 158 (222)
T ss_dssp HHHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC
T ss_pred ccCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC
Confidence 22345666 44 333333333343 37899999999999999 3221 1 0
Q ss_pred CCC----hHHHHHHHHHHhhh---ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 209 ESE----VLPQLFALYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 209 ~~~----~~~~l~~~~~er~~---~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
..+ +...+...+.++.+ .|....++|| + +.++++++++|.+.+...+
T Consensus 159 ~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id------------~-~~~~~ev~~~I~~~l~~~l 212 (222)
T 1zak_A 159 FDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQ------------G-DATVDAVFAKIDELLGSIL 212 (222)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEE------------C-SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEE------------C-CCCHHHHHHHHHHHHHhhc
Confidence 011 22233355565555 4444456666 3 6899999999999987654
No 31
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.66 E-value=5.2e-17 Score=138.86 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=97.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhHhH---HHHHH-------------
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ---QAETE------------- 155 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~fr---~~e~~------------- 155 (278)
++|+|+|++||||||+++.|++ +|++++++|++.++.+. ...+.+++...|+..|+ ..+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999999876542 12233444444433221 00000
Q ss_pred --------------HHHHHHc-CC-CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH
Q 023749 156 --------------VLKQLSS-MG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA 218 (278)
Q Consensus 156 --------------vl~~l~~-~~-~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~ 218 (278)
+...+.. .+ ..||..+. .+.+.++..+ .+.+|||++|++++.+| ..|++. .+.+.+
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~--~l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~~~----~~~~~~ 153 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEAS--LLVEKGTYKN-YDKLIVVYAPYEVCKERAIKRGMS----EEDFER 153 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECS--CSTTTTCGGG-SSEEEEECCCHHHHHHHHHHTCCC----HHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEcc--ccccCCchhh-CCEEEEEECCHHHHHHHHHHcCCC----HHHHHH
Confidence 0011111 11 34444432 2222222111 67899999999999999 555432 233444
Q ss_pred HHHHhhh---ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCCCccc
Q 023749 219 LYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSR 274 (278)
Q Consensus 219 ~~~er~~---~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~~~~~ 274 (278)
.+..+.+ .+..||++||+ + .++++++++|.+++.+...||.-|
T Consensus 154 ~~~~~~~~~~~~~~ad~vId~------------~-~~~~~~~~~i~~~l~~~~~~~~~~ 199 (204)
T 2if2_A 154 RWKKQMPIEEKVKYADYVIDN------------S-GSIEETYKQVKKVYEELTRDPLEH 199 (204)
T ss_dssp HHTTSCCHHHHGGGCSEECCC------------S-SCHHHHHHHHHHHHHTTCC-----
T ss_pred HHHhCCChhHHHhcCCEEEEC------------C-CCHHHHHHHHHHHHHHHhcChhhh
Confidence 4433332 22358988873 3 699999999999999999999765
No 32
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.64 E-value=2.2e-15 Score=126.60 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=94.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHHhhchh------HhHHHHH-----HHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESDEK------GYQQAET-----EVLKQ 159 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~~~g~~~i~ei~~~~ge~------~fr~~e~-----~vl~~ 159 (278)
+.|+|+|++||||||+|+.|++.+ |++++++|.......| ..+.+++.. |+. .|...+. .++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~ 78 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVG-EVLREILLT-EELDERTELLLFEASRSKLIEEKIIP 78 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHH-HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchH-HHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 9999998742211111 112233321 210 1111111 11222
Q ss_pred HHcCCCEEEEe----------CCceeechhHHH----hh----hCCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHH
Q 023749 160 LSSMGRLVVCA----------GNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFAL 219 (278)
Q Consensus 160 l~~~~~~VI~~----------g~g~v~~~~~~~----~L----~~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~ 219 (278)
....+..|+.. |.+.......+. .+ ..+++|||++|++++.+| .+|++.. .+..+.+...
T Consensus 79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~ 158 (195)
T 2pbr_A 79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVRKG 158 (195)
T ss_dssp HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHHHHHH
Confidence 23345566665 322222222211 12 257899999999999999 5555432 1122333344
Q ss_pred HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
|.++...| .+.++||+ +.++++++++|.+.+.+.++
T Consensus 159 ~~~~~~~~-~~~~~Id~-------------~~~~~~~~~~i~~~l~~~l~ 194 (195)
T 2pbr_A 159 FLELAKEE-ENVVVIDA-------------SGEEEEVFKEILRALSGVLR 194 (195)
T ss_dssp HHHHHHHS-TTEEEEET-------------TSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhC-CCEEEEEC-------------CCCHHHHHHHHHHHHHHHhC
Confidence 55443333 24478873 57999999999999987765
No 33
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.64 E-value=4.7e-15 Score=124.28 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHh---CCC--ChHHHHHhhchhHhHHHHHHH---HH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA---GGE--SAAKAFRESDEKGYQQAETEV---LK 158 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~---g~~--~i~ei~~~~ge~~fr~~e~~v---l~ 158 (278)
+++.|+|+|+|||||||+|+.|++.+| +++++.|+++++.. | . +..+++. .....++..+..+ +.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~ 79 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN-LVSDRDQMRK-MDPETQKRIQKMAGRKIA 79 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTT-SCSSGGGGSS-CCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccC-CCCCHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999 99999988766542 2 1 2222211 1112223333222 33
Q ss_pred HHHcCCCEEEEeCCceeechhHH------Hhh---hCCcEEEEEcCHHHHHh-h-hc--CCCCCCChH-----HHHHHHH
Q 023749 159 QLSSMGRLVVCAGNGAVQSSANL------ALL---RHGISLWIDVPPGMVAR-M-DH--SGFPESEVL-----PQLFALY 220 (278)
Q Consensus 159 ~l~~~~~~VI~~g~g~v~~~~~~------~~L---~~~~vV~L~a~~e~l~~-R-~~--r~rp~~~~~-----~~l~~~~ 220 (278)
.+...+. ||.+|.+.......+ ..+ ..+++|||++|++++.+ | .. |+++..... ..+...+
T Consensus 80 ~~~~~~~-viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~ 158 (192)
T 1kht_A 80 EMAKESP-VAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCA 158 (192)
T ss_dssp HHHTTSC-EEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHH
T ss_pred hhccCCe-EEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHH
Confidence 3333444 444565543322211 222 25789999999999996 7 54 776643321 1233334
Q ss_pred HHhhhccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 221 KEMRDGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 221 ~er~~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
.++...|..+. .+|++ ...++++++++|.+.+
T Consensus 159 ~~~~~~~~~~~~~~i~~------------~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 159 AMSYGVLTGATVKIVQN------------RNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHCCEEEEEEC------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeC------------CCCCHHHHHHHHHHHh
Confidence 44444443333 34442 3356999999998876
No 34
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.64 E-value=2.7e-15 Score=126.32 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHH-------HHHHHHHcCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET-------EVLKQLSSMG 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~-------~vl~~l~~~~ 164 (278)
+++.|+|+|+|||||||+|+.|++.+|+++++.|.+.+...+ . +...+..+++..+. ..+......+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 77 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD-G-----LGWSDREWSRRVGATAIMMLYHTAATILQSG 77 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH-H-----HCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHH-h-----cCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999998766543 0 01111122222211 1122222233
Q ss_pred CEEEEeCCceeechh---HHHhhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCC----ChHH--HHHHHHHHhhh
Q 023749 165 RLVVCAGNGAVQSSA---NLALLR-----HGISLWIDVPPGMVARM-DHS----GFPES----EVLP--QLFALYKEMRD 225 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~---~~~~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~----~~~~--~l~~~~~er~~ 225 (278)
..||..+.. .... .+..+. ..++|||++|++++.+| ..| .||.. +... .+...++.+.+
T Consensus 78 ~~vi~d~~~--~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 155 (193)
T 2rhm_A 78 QSLIMESNF--RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPP 155 (193)
T ss_dssp CCEEEEECC--CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCC
T ss_pred CeEEEecCC--CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCC
Confidence 334433322 1111 121133 13789999999999999 333 24411 2222 24445555555
Q ss_pred ccc-cCcEEEecCcccccccccCCCCC---CHHHHHHHHHHHhh
Q 023749 226 GYA-TADVTVSLQKVASQLGYDDLDAV---TTEDMTLEVKWLYN 265 (278)
Q Consensus 226 ~Y~-~AD~vId~~~va~~~~~~Dts~~---tpeeva~~I~~~i~ 265 (278)
+|. .++++||+ ++. ..+++++.|.+.+.
T Consensus 156 ~~~~~~~~~Idt------------~~~~~~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 156 LPLGGPLLTVDT------------TFPEQIDMNAIVQWVRQHLQ 187 (193)
T ss_dssp CCCCSCEEEEEC------------SSGGGCCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeC------------CCCcccCHHHHHHHHHHHHH
Confidence 665 57888884 443 55677777666654
No 35
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.63 E-value=1.4e-15 Score=132.69 Aligned_cols=110 Identities=10% Similarity=0.065 Sum_probs=71.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhchhHhHHHHHHHH-HHHHc--C
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVL-KQLSS--M 163 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~----~~i~ei~~~~ge~~fr~~e~~vl-~~l~~--~ 163 (278)
+++.|+|+|++||||||+|+.|++.+|++++++|++++... ++ ..+.+++.. |+..+++.....+ ..+.. .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999887643 11 223344432 4434444433333 34432 3
Q ss_pred CCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749 164 GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 164 ~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R 202 (278)
..+|++...+.+.....+..+. .+++|||++|++++.+|
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R 124 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQR 124 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 4455543332221122233223 67999999999999999
No 36
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.63 E-value=2.7e-15 Score=130.03 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=69.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhchhHhHHHHHHHHHHHHc----
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS---- 162 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-~g~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~---- 162 (278)
.++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++ ..+.+++. .|+..+++....++.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999999999999998764 221 22334443 2433444444444444332
Q ss_pred -CCCEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh
Q 023749 163 -MGRLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 163 -~~~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R 202 (278)
...+|+ .| +.....+.. .+. .+++|||++|++++.+|
T Consensus 82 ~~~~~i~-dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (220)
T 1aky_A 82 CKNGFIL-DG--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128 (220)
T ss_dssp GGSCEEE-ES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred cCCCeEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 233344 33 221111111 221 35899999999999999
No 37
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.62 E-value=1.3e-15 Score=135.86 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=36.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~ 130 (278)
++..|.|+|++||||||+++.|+++||+.++|+|.+++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 478999999999999999999999999999999998844
No 38
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.61 E-value=5.9e-15 Score=127.29 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=94.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHh---------------HHHHH-HH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY---------------QQAET-EV 156 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~f---------------r~~e~-~v 156 (278)
-++|.|+|++||||||+|+.|++.+|++++|+|.+.++.++ ..+.+++..+|+..| .+.+. ..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~ 90 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK 90 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence 35799999999999999999999999999999999888775 345556666665433 11110 11
Q ss_pred HH-------------HHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 023749 157 LK-------------QLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEM 223 (278)
Q Consensus 157 l~-------------~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er 223 (278)
++ .+......|+..+ ..+.+.++.. ..+.+|||++|++++.+|- ...++..++
T Consensus 91 l~~i~hP~i~~~~~~~~~~~~~~vv~d~--pll~e~~~~~-~~d~vi~v~a~~e~r~~Rl--------i~~q~~~~~--- 156 (192)
T 2grj_A 91 LELLVHPLMKKRVQEIINKTSGLIVIEA--ALLKRMGLDQ-LCDHVITVVASRETILKRN--------READRRLKF--- 156 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEC--TTTTTTTGGG-GCSEEEEEECCHHHHHHHC--------SSHHHHHTT---
T ss_pred HHhhhCHHHHHHHHHHHHHcCCEEEEEE--eceeecChHH-hCCEEEEEECCHHHHHHHH--------HHhcCCchh---
Confidence 11 1212233344332 1222222211 1678999999999999983 011221111
Q ss_pred hhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 224 RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 224 ~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
.+.++.||++|+| +.+++++.++|.+++...
T Consensus 157 ~~~~~~AD~vI~n-------------~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 157 QEDIVPQGIVVAN-------------NSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp CTTCCCCSEEEEC-------------SSCHHHHHHHHHHHHHHH
T ss_pred hhHHhcCCEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence 2223479999995 369999999998887643
No 39
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.60 E-value=1.1e-14 Score=127.76 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChHHHHHhhchhHhHHHHHHHHHHHHcCC-
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG- 164 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~- 164 (278)
.++.|+|+|++||||||+|+.||+++|++++++|+++++.. | ..+.+++. .|+..+.+....++.......
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g-~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELG-KKLKATMD-AGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHH-HHHHHHHH-TTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhH-HHHHHHHH-CCCcCCHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999887632 2 22334443 233344555445554433221
Q ss_pred --CEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC
Q 023749 165 --RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 165 --~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r 205 (278)
..+|..| +.......+ .+. .+++|||++|++++.+| ..|
T Consensus 93 ~~~g~ildg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R 143 (233)
T 1ak2_A 93 CKNGFLLDG--FPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR 143 (233)
T ss_dssp GTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTC
T ss_pred ccCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 1233333 111111111 221 57899999999999999 443
No 40
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.60 E-value=8.4e-15 Score=125.38 Aligned_cols=151 Identities=16% Similarity=0.114 Sum_probs=91.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhHhHH--------------------
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQQ-------------------- 151 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~fr~-------------------- 151 (278)
..|.|+|++||||||+++.|++ +|++++|+|.+.++... ...+.+++...|+..|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 4799999999999999999998 99999999998766432 122344444444433221
Q ss_pred --HHH--------HHHHHHHc-CCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHH
Q 023749 152 --AET--------EVLKQLSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (278)
Q Consensus 152 --~e~--------~vl~~l~~-~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~ 217 (278)
.+. .+...+.. .+..||..+. .+.+.. ..+ .+.+|||++|++++.+| ..| +++ .+.+.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~--~l~e~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~----~e~~~ 153 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP--LLIENK--LTALCDRILVVDVSPQTQLARSAQRDNNN----FEQIQ 153 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT--TTTTTT--CGGGCSEEEEEECCHHHHHHHHC-----C----HHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEec--hhhhcC--cHhhCCEEEEEECCHHHHHHHHHHcCCCC----HHHHH
Confidence 000 00011111 1223443221 111221 223 67899999999999999 444 332 23444
Q ss_pred HHHH---HhhhccccCcEEEecCcccccccccCCCCCCHH----HHHHHHHHHhhh
Q 023749 218 ALYK---EMRDGYATADVTVSLQKVASQLGYDDLDAVTTE----DMTLEVKWLYNA 266 (278)
Q Consensus 218 ~~~~---er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpe----eva~~I~~~i~~ 266 (278)
+.+. .+.+.|+.||++|++ ++ +++ +++++|.+++..
T Consensus 154 ~r~~~q~~~~~~~~~ad~vIdn------------~~-~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 154 RIMNSQVSQQERLKWADDVINN------------DA-ELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp HHHHHSCCHHHHHHHCSEEEEC------------CS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHhCCEEEEC------------CC-CccccHHHHHHHHHHHHHH
Confidence 4444 244556679999984 45 999 999999888764
No 41
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.59 E-value=1.5e-14 Score=123.43 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=94.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--CCCChH----HHHHhhchhHhHHHHHHHHH----H-H
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAA----KAFRESDEKGYQQAETEVLK----Q-L 160 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g~~~i~----ei~~~~ge~~fr~~e~~vl~----~-l 160 (278)
.++.|+|+|++||||||+|+.|++.+|++++|+|+++++.. ++..+. +++. .|+..+.+.....+. . +
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence 45689999999999999999999999999999999887652 223322 2332 233333333222222 2 2
Q ss_pred HcCCCEEEEeCCceeec-hhHHH-hhh-CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHH----HHHHhhhc--
Q 023749 161 SSMGRLVVCAGNGAVQS-SANLA-LLR-HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFA----LYKEMRDG-- 226 (278)
Q Consensus 161 ~~~~~~VI~~g~g~v~~-~~~~~-~L~-~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~----~~~er~~~-- 226 (278)
......++..|...-.. ...++ .+. .+++|||++|++++.+| ..| ++... ..+.+.+ .++.+.+.
T Consensus 93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~-~~e~~~~r~~~~~~~~~~~~~ 171 (203)
T 1ukz_A 93 KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDD-NIESIKKRFNTFKETSMPVIE 171 (203)
T ss_dssp HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTC-SHHHHHHHHHHHHHTTHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCC-CHHHHHHHHHHHHHhhHHHHH
Confidence 22223344333211011 11111 122 57899999999999999 333 34322 2333322 23333333
Q ss_pred -cccCcEE--EecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 227 -YATADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 227 -Y~~AD~v--Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
|+.++.+ || + +.++++++++|.+.+.+.
T Consensus 172 ~~~~~~~vi~id------------~-~~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 172 YFETKSKVVRVR------------C-DRSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp HHHTTTCEEEEE------------C-SSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcEEEEE------------C-CCCHHHHHHHHHHHHhcc
Confidence 3456654 45 2 489999999999998754
No 42
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.59 E-value=8.3e-16 Score=135.19 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=95.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCCh------HHHHH----------------
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESA------AKAFR---------------- 142 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i------~ei~~---------------- 142 (278)
..+.+|.|+|++||||||+++.|++.||++++|+|.+.+.. .| .+. .+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQ-LGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccC-CCcccHHHHHHHHHhccccccccCCccceE
Confidence 46789999999999999999999999999999999988653 23 221 11110
Q ss_pred -hhchhHhHHHH---------------------HHHHHHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHH
Q 023749 143 -ESDEKGYQQAE---------------------TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMV 199 (278)
Q Consensus 143 -~~ge~~fr~~e---------------------~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l 199 (278)
..|+..++.++ ......++..+.+|+ .|... ....++ .+++|||++|++++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~-~g~~~-----~~~~l~~~d~vi~L~a~~e~~ 166 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM-DGRDI-----GTVVLPQAELKIFLVASVDER 166 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEE-ECSSC-----SSSSGGGCSEEEEEECCHHHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEE-ECCcc-----hhhhccCCCEEEEEECCHHHH
Confidence 11221111000 001112233333444 23211 001233 67899999999999
Q ss_pred Hhh-h----cCCCCCCChHHHHHHHHHHhh---------hccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 200 ARM-D----HSGFPESEVLPQLFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 200 ~~R-~----~r~rp~~~~~~~l~~~~~er~---------~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
.+| . .|++.. ..+.+.+.+.+|+ ++|..+| ++|| ++++++++++++|.+++
T Consensus 167 ~~R~~~~~~~R~~~~--~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId------------~~~~s~eev~~~I~~~l 232 (236)
T 1q3t_A 167 AERRYKENIAKGIET--DLETLKKEIAARDYKDSHRETSPLKQAEDAVYLD------------TTGLNIQEVVEKIKAEA 232 (236)
T ss_dssp HHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEE------------CSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--CHHHHHHHHHHHhhhhhhcccccccccCCEEEEc------------CCCCCHHHHHHHHHHHH
Confidence 988 2 344321 2344555555542 4555555 8888 56789999999999998
Q ss_pred hhc
Q 023749 265 NAS 267 (278)
Q Consensus 265 ~~~ 267 (278)
...
T Consensus 233 ~~~ 235 (236)
T 1q3t_A 233 EKR 235 (236)
T ss_dssp HHH
T ss_pred Hhh
Confidence 754
No 43
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.59 E-value=2.9e-14 Score=121.26 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=94.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCC------hHHHHHh----------------hc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGES------AAKAFRE----------------SD 145 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~------i~ei~~~----------------~g 145 (278)
+.|.|+|++||||||+|+.|++.+|++++|.|.+.+... | .+ +.++... .|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAG-VDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG 81 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHTTCEEECCTTCCEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcC-CCCCCHHHHHHHHHhCceeeeecCCCceEEECC
Confidence 489999999999999999999999999999999886542 3 21 1111111 12
Q ss_pred hhHhHHHHH------------------HHHH---HHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-
Q 023749 146 EKGYQQAET------------------EVLK---QLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM- 202 (278)
Q Consensus 146 e~~fr~~e~------------------~vl~---~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R- 202 (278)
+..|+..+. .+.. ++. +.+|+. |.. .. ...++ .+++|||++|++++.+|
T Consensus 82 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~-g~~--~~---~~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 82 EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAE-GRD--MG---TAVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp EECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEE-ESS--CC---CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEE-ccc--ee---EEEecCCcEEEEEECCHHHHHHHH
Confidence 222221111 1111 111 334432 221 11 01123 57899999999999999
Q ss_pred hcCCCCCCChHHHHHHHHHHhhhcc----c-cCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 203 DHSGFPESEVLPQLFALYKEMRDGY----A-TAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 203 ~~r~rp~~~~~~~l~~~~~er~~~Y----~-~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
..|.. .+ .+.+.+.+.+|.+.| . .+| ++|| ++++++++++++|.+++.
T Consensus 154 ~~r~~--~~-~~~~~~~~~~R~~~~~~~~~~~ad~~~Id------------~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERP--QA-YEEVLRDLLRRDERDKAQSAPAPDALVLD------------TGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSS--SC-HHHHHHHHHHHHHTC--CCCCCTTCEEEE------------TTTSCHHHHHHHHHHHHH
T ss_pred Hhhcc--cC-HHHHHHHHHHHHHHHhhcccCCCCEEEEE------------CCCCCHHHHHHHHHHHHh
Confidence 44432 22 356777777777766 4 477 8888 567899999999998875
No 44
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.59 E-value=4.8e-15 Score=129.94 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=101.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--CCCChHHHHHhhchhHhH----------------HH-HH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQ----------------QA-ET 154 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g~~~i~ei~~~~ge~~fr----------------~~-e~ 154 (278)
-.|.|+|.+||||||+++.|++ +|++++|+|.+.++.+ |+..+.+++..+|+..|. +- ..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 3689999999999999999988 9999999999988866 234566777777765542 00 00
Q ss_pred HHHH-------------HHHc-CCCEEEEeCCceeech-hHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHH
Q 023749 155 EVLK-------------QLSS-MGRLVVCAGNGAVQSS-ANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF 217 (278)
Q Consensus 155 ~vl~-------------~l~~-~~~~VI~~g~g~v~~~-~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~ 217 (278)
+.|+ .+.. ....|+... .++.+ .++.. ..+.+||+++|++++.+| ..| +...++..+.+.
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~--pLL~E~~~~~~-~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~ 165 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVV--PLLVESRNWKA-RCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIA 165 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC--TTCTTCHHHHH-HCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE--ecccccCCccc-cCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1111 1111 122333221 13344 44432 168999999999999999 433 554433444444
Q ss_pred HHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 218 ~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
.++.. ...++.||++|+| ++.+++++..+|.+++...
T Consensus 166 ~Q~~~-eek~~~AD~VIdN------------~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 166 RQATR-EARLAAADDVIVN------------DAATPDALAVQVDALHQRY 202 (210)
T ss_dssp HSCCH-HHHHHTCSEEEEC------------SSCCHHHHHHHHHHHHHHH
T ss_pred HcCCh-HHHHHhCCEEEEC------------CCCCHHHHHHHHHHHHHHH
Confidence 44322 2233479999995 2159999999998887653
No 45
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.57 E-value=1.8e-15 Score=128.30 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=93.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHHhhchhHhH--------------------
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQ-------------------- 150 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~~~ge~~fr-------------------- 150 (278)
+++.|+|+|++||||||+|+.|++. |++++|+|.+.++.. | .. .+++..+ +..|+
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~-~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAREN-KE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHH-TH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCC-hH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHH
Confidence 4678999999999999999999997 999999999887655 4 22 2232222 11110
Q ss_pred -HHHH--------HHHHHHHcC-CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHH
Q 023749 151 -QAET--------EVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFA 218 (278)
Q Consensus 151 -~~e~--------~vl~~l~~~-~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~ 218 (278)
.++. ..+...... +.+||..+. .+.+.++.. ..+.+|||++|++++.+| ..|+ ... +.+..
T Consensus 83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~~~-~~d~~i~l~~~~e~~~~R~~~R~~~~~----~~~~~ 155 (203)
T 1uf9_A 83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGWEG-RLHGTLLVAAPLEERVRRVMARSGLSR----EEVLA 155 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTCGG-GSSEEEEECCCHHHHHHHHHTTTCCTT----HHHHH
T ss_pred HHHHHHhChHHHHHHHHHhhhcCCCEEEEEec--ceeccCchh-hCCEEEEEECCHHHHHHHHHHcCCCCH----HHHHH
Confidence 0110 111111122 455655432 222222211 157899999999999999 5442 222 22333
Q ss_pred HHHHhhhcc---ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCCC
Q 023749 219 LYKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDP 271 (278)
Q Consensus 219 ~~~er~~~Y---~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~~ 271 (278)
.+.++.+.+ ..+|++||+ ++ ++++++++|.+++....+.|
T Consensus 156 ~i~~~~~~~~~~~~ad~vId~------------~~-~~~~~~~~i~~~~~~~~~~~ 198 (203)
T 1uf9_A 156 RERAQMPEEEKRKRATWVLEN------------TG-SLEDLERALKAVLAELTGGA 198 (203)
T ss_dssp HHTTSCCHHHHHHHCSEEECC------------SS-HHHHHHHHHHHHHHSCCC--
T ss_pred HHHHCCChhHHHHhCCEEEEC------------CC-CHHHHHHHHHHHHHHHHhhh
Confidence 333333222 358998883 44 99999999999998766544
No 46
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.57 E-value=2e-14 Score=121.68 Aligned_cols=157 Identities=14% Similarity=0.091 Sum_probs=88.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCc----hHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD----SLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D----~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~ 169 (278)
+.|+|+|++||||||+++.|++.+|+++++.. .+++..+. .... ....-...|...+.+.+......+. +|.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-vi~ 76 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYK--DLKK-TVFKMQIYMLTARSKQLKQAKNLEN-IIF 76 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTT--CHHH-HHHHHHHHHHHHHHHHHC------C-EEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHh--Cccc-cchhHHHHHHHHHHHHHHHhhccCC-EEE
Confidence 47999999999999999999999999887531 11222111 0000 0000000111111111212222233 443
Q ss_pred eCC--------------ceeechh----------HHHhh-------h-CCcEEEEEcCHHHHHhh-hcCCCCCC-----C
Q 023749 170 AGN--------------GAVQSSA----------NLALL-------R-HGISLWIDVPPGMVARM-DHSGFPES-----E 211 (278)
Q Consensus 170 ~g~--------------g~v~~~~----------~~~~L-------~-~~~vV~L~a~~e~l~~R-~~r~rp~~-----~ 211 (278)
... |.+.... ....+ . .+++|||++|++++.+| ..|+++.. +
T Consensus 77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~ 156 (205)
T 2jaq_A 77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEE 156 (205)
T ss_dssp ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHH
T ss_pred EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHH
Confidence 321 1111111 00111 2 56899999999999999 55666532 2
Q ss_pred hHHHHHHHHHHhhhcc--ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 212 VLPQLFALYKEMRDGY--ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 212 ~~~~l~~~~~er~~~Y--~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
..+.+..+|.++.+.| ..++++||+ ++ ++++++++|.+.+.+.
T Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~Id~------------~~-~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 157 YWETLNKNYEEFYKQNVYDFPFFVVDA------------EL-DVKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEEET------------TS-CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccccCcEEEEEC------------CC-CHHHHHHHHHHHHHHh
Confidence 3355667777776767 358899984 34 9999999999998653
No 47
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.57 E-value=7.8e-15 Score=145.17 Aligned_cols=160 Identities=13% Similarity=0.184 Sum_probs=90.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC------CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg------~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
+|..|+|+|++||||||+++.|+..++ +.++|.|.+.+...+ .+. +-...++..++.+ ..+...+...++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~--~l~-f~~~~r~~~~r~i-~~v~q~l~~~~~ 443 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS--ELG-FSKAHRDVNVRRI-GFVASEITKNRG 443 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS--SCC-CSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc--ccC-CCHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 688999999999999999999999984 557999888654322 111 1011223334433 334455555567
Q ss_pred EEEEeCCc--eeechhHHHhhh-CC--cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749 166 LVVCAGNG--AVQSSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (278)
Q Consensus 166 ~VI~~g~g--~v~~~~~~~~L~-~~--~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~ 238 (278)
.++.++.+ ......+++.++ .+ ++|||++|.+++.+|.+++.........+..++..|.++|. .+|++||
T Consensus 444 ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Id--- 520 (552)
T 3cr8_A 444 IAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAID--- 520 (552)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEEC---
T ss_pred EEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEE---
Confidence 77766532 122234455565 56 79999999999999944443222223457778888888774 5899987
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
|++.++++++++|++.+.+.
T Consensus 521 ---------t~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 521 ---------TTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp ---------CSSCCHHHHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHHHHhc
Confidence 67899999999999999653
No 48
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.56 E-value=1.9e-14 Score=124.37 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=93.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--CCCChHHHHHhhchhHhH-------------------
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQ------------------- 150 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g~~~i~ei~~~~ge~~fr------------------- 150 (278)
.++.|+|+|++||||||+++.|++ +|++++|+|.+.++.. +...+.+++...|+..+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 357899999999999999999998 9999999999887653 212334444444432221
Q ss_pred ---HHHHH---HH-----HHHHc-CCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHH
Q 023749 151 ---QAETE---VL-----KQLSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQ 215 (278)
Q Consensus 151 ---~~e~~---vl-----~~l~~-~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~ 215 (278)
..+.. .+ ..+.. ....++..+ .. +.+.++ .. .+.+|||++|++++.+| ..| +.. .+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~-l~~~~~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~----~~~ 153 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PL-LVENSL--YKKANRVLVVDVSPETQLKRTMQRDDVT----REH 153 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TT-TTTTTG--GGGCSEEEEEECCHHHHHHHHHHHHTCC----HHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-ee-eeccCc--cccCCEEEEEECCHHHHHHHHHHcCCCC----HHH
Confidence 00100 00 01111 123344322 11 112222 23 67999999999999999 444 222 234
Q ss_pred HHHHHHHhhhcc---ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 216 LFALYKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 216 l~~~~~er~~~Y---~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
+.+.+..+.+.| ..||++||+ ++ ++++++++|.+++...
T Consensus 154 ~~~~~~~~~~~~~~~~~ad~vId~------------~~-~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 154 VEQILAAQATREARLAVADDVIDN------------NG-APDAIASDVARLHAHY 195 (218)
T ss_dssp HHHHHHHSCCHHHHHHHCSEEEEC------------SS-CTTSHHHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHhCCEEEEC------------CC-CHHHHHHHHHHHHHHH
Confidence 555555444333 358999984 44 8888888888877643
No 49
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.55 E-value=1.1e-13 Score=115.90 Aligned_cols=157 Identities=7% Similarity=0.016 Sum_probs=91.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCCh---HHHHHhhc----hhHhHHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESA---AKAFRESD----EKGYQQAETEVLKQLS 161 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i---~ei~~~~g----e~~fr~~e~~vl~~l~ 161 (278)
+.|+|+|+|||||||+|+.|+++++ +.+++.|+++.+..+...+ .+-|.... ...+...... +....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l 80 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEA 80 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH-HHHHh
Confidence 4799999999999999999999998 8889888877654310110 11111110 0111111111 22332
Q ss_pred --cCCCEEEEeCCceeech---------hHHHhhhCCcEEEEEcCHHHHHhh--hc--CCC-CCCCh-----HHHHHHHH
Q 023749 162 --SMGRLVVCAGNGAVQSS---------ANLALLRHGISLWIDVPPGMVARM--DH--SGF-PESEV-----LPQLFALY 220 (278)
Q Consensus 162 --~~~~~VI~~g~g~v~~~---------~~~~~L~~~~vV~L~a~~e~l~~R--~~--r~r-p~~~~-----~~~l~~~~ 220 (278)
..+..||..+.+.+... .....+..+.+|||++|++++.+| .. |++ +..+. ...+...|
T Consensus 81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~ 160 (194)
T 1nks_A 81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA 160 (194)
T ss_dssp HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHH
T ss_pred hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHH
Confidence 34556676654332221 111222367899999999998855 45 766 42221 12244556
Q ss_pred HHhhhccccCc-EEE-ecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 221 KEMRDGYATAD-VTV-SLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 221 ~er~~~Y~~AD-~vI-d~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
.++...|..++ ++| | .+.++++++++|.+++
T Consensus 161 ~~~~~~~~~~~~~~I~d-------------~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 161 ATASAVLAGSTVKVIVN-------------VEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHTCEEEEEEC-------------CSSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeC-------------CCCCHHHHHHHHHHHh
Confidence 66555453333 566 4 3479999999999876
No 50
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.53 E-value=2.7e-14 Score=118.50 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=80.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH-HhCCceecCchHHHHHhCCCChH--HHHHhhchhHhHHHHHHHHHHHH---cCCCE
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL 166 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe-~Lg~~~iD~D~li~~~~g~~~i~--ei~~~~ge~~fr~~e~~vl~~l~---~~~~~ 166 (278)
++.|+|+|+|||||||+|+.|++ .+|+.++++|.+.+...+ .+.. ..+...++..+.+....++.... ..+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence 56899999999999999999999 689999999988776655 2111 01222234445444444555555 44445
Q ss_pred EEEeCCceeechhHHHhh----h-CC---cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecC
Q 023749 167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQ 237 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L----~-~~---~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~ 237 (278)
||..+. ......++.+ + .+ .+|||++|++++.+| ..|+... ...+.+.++++..........++||
T Consensus 81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-~~~~~i~~~~~~~~~~~~~~~~~id-- 155 (181)
T 1ly1_A 81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA-VPIDVLRSMYKSMREYLGLPVYNGT-- 155 (181)
T ss_dssp EEECSC--CCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGC-CCHHHHHHHHHHHHHHHTCCCC-----
T ss_pred EEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCC-CCHHHHHHHHHHhhccCCCCccccC--
Confidence 554432 2222222222 2 22 689999999999999 5554211 1234555554443332222235555
Q ss_pred cccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 238 KVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
++ . |+++...|...+..+
T Consensus 156 ----------~~-~-~~~v~~~i~~~l~~~ 173 (181)
T 1ly1_A 156 ----------PG-K-PKAVIFDVDGTLAKM 173 (181)
T ss_dssp ------------------------------
T ss_pred ----------CC-C-Cceeeehhhhhhhcc
Confidence 22 2 477777777666553
No 51
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.53 E-value=1.6e-13 Score=118.06 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=65.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-----ChHHHHHhhchhHhHHHHHHHHHHHHc----CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVLKQLSS----MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-----~i~ei~~~~ge~~fr~~e~~vl~~l~~----~~ 164 (278)
++|+|+|+|||||||+|+.|++++|++++++|+++++..... .+.+.+.. |..........++..... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence 479999999999999999999999999999999887743211 12222222 211122222223322221 23
Q ss_pred CEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC
Q 023749 165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r 205 (278)
.+|+ .| ......... .+. .+.+|||++|++++.+| ..|
T Consensus 80 ~~il-dg--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 80 GFLL-DG--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp CEEE-ES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred cEEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 3444 33 222222211 121 45899999999999999 444
No 52
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.52 E-value=7.2e-14 Score=121.97 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=67.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCC----ChHHHHHhhchhHhHHHHHHHHHHHHcC--CCE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSSM--GRL 166 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~----~i~ei~~~~ge~~fr~~e~~vl~~l~~~--~~~ 166 (278)
+.|+|+|+|||||||+|+.|++.+|++++++|+++++.. ++. .+.+++. .|+..+.+....++...... +..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence 479999999999999999999999999999999988763 211 1223332 23323333333333332222 333
Q ss_pred EEEeCCceeechhHHHhh---------hCCcEEEEEcCHHHHHhh-hcC
Q 023749 167 VVCAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L---------~~~~vV~L~a~~e~l~~R-~~r 205 (278)
||..|. .........+ ..+++|||++|++++.+| ..|
T Consensus 80 vIlDg~--~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 126 (223)
T 2xb4_A 80 WLLDGF--PRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126 (223)
T ss_dssp EEEESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTB
T ss_pred EEEeCC--cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 444432 2211111111 146899999999999999 443
No 53
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.52 E-value=2.5e-13 Score=117.31 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=65.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhchhHhHHHHHHHHHHHHcC---C
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM---G 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~---~ 164 (278)
+.|+|+|+|||||||+|+.|++.+|++++++|+++++. .| ..+.+++.. |.....+....++...... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELG-KQAKDIMDA-GKLVTDELVIALVKERIAQEDCR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTT-GGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccccC
Confidence 47999999999999999999999999999999988773 22 344555543 2211122222222222211 1
Q ss_pred CEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh
Q 023749 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R 202 (278)
..+|..| +.....+...|. .+++|||++|++++.+|
T Consensus 79 ~~~i~dg--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R 119 (214)
T 1e4v_A 79 NGFLLDG--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119 (214)
T ss_dssp GCEEEES--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred CCEEEeC--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 2234343 222222223332 46899999999999999
No 54
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.52 E-value=2.4e-13 Score=117.07 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=64.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-C----hHHHHHhhchhHhHHHHHHHHH-HHHc---CC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-S----AAKAFRESDEKGYQQAETEVLK-QLSS---MG 164 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-~----i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~ 164 (278)
++|+|+|+|||||||+|+.|++++|++++++|+++++..... . +.+++.. |..........++. .+.. ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDK-GELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccccC
Confidence 479999999999999999999999999999999887743211 1 2222221 21111222222222 2221 23
Q ss_pred CEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC
Q 023749 165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r 205 (278)
.+|+. | ......... .+. .+.+|||++|++++.+| ..|
T Consensus 80 ~~ild-g--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 80 GFLLD-G--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp CEEEE-S--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred CEEEe-C--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 34443 3 222211111 121 45899999999999999 444
No 55
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.51 E-value=1e-13 Score=116.85 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=85.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHHhhc-----hhH-hHHHHHHHHHHH---H
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESD-----EKG-YQQAETEVLKQL---S 161 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~~~g~~~i~ei~~~~g-----e~~-fr~~e~~vl~~l---~ 161 (278)
+.|+|+|++||||||+++.|++.+ |++++.++.-.....| ..+.+++.... +.. |.......+.++ .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l 79 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETG-EKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHH-HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999 9999876431100001 11122221100 000 111111112222 1
Q ss_pred cCCCEEEEeC----------CceeechhHHHhh--------hCCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHHHH
Q 023749 162 SMGRLVVCAG----------NGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYK 221 (278)
Q Consensus 162 ~~~~~VI~~g----------~g~v~~~~~~~~L--------~~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~~~ 221 (278)
..+..|+... .+.......+..+ ..+++|||++|++++.+| ..|++... +..+.+...|.
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~ 159 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYL 159 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHHHHHHHHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 2244555542 1111121111111 257899999999999999 65555332 22333444455
Q ss_pred HhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 222 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 222 er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
+....+....++||+ +.+++++.++|.+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 160 VLAREHPERIVVLDG-------------KRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHTTCC--
T ss_pred HHHHhCCCCEEEEeC-------------CCCHHHHHHHHHHHHHHHhc
Confidence 544333333467873 57999999999999987653
No 56
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.51 E-value=1.2e-13 Score=121.52 Aligned_cols=158 Identities=12% Similarity=0.082 Sum_probs=92.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHH----HHHHc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVL----KQLSS 162 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl----~~l~~ 162 (278)
++++|+|+|+|||||+|+|+.|++++|++++++++++++.....+ +.+++. .|.....++-..++ .+...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence 577889999999999999999999999999999999877543122 122222 23221112211222 22222
Q ss_pred CCCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHH---HHH-h---hh
Q 023749 163 MGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFAL---YKE-M---RD 225 (278)
Q Consensus 163 ~~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~---~~e-r---~~ 225 (278)
....+|.. |++....+...|. .+.+|+|++|.+++.+| ..| +|+.+ ..+.+.+. |.+ - ..
T Consensus 107 ~~~g~ilD--GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD-~~e~i~~Rl~~Y~~~t~pl~~ 183 (217)
T 3umf_A 107 KNCHFLID--GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDD-NEETIVKRFRTFNELTKPVIE 183 (217)
T ss_dssp TCSEEEEE--TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHH-HHHHHHHHHHHHHHHTHHHHH
T ss_pred cccCcccc--cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 3443333333332 56899999999999999 444 23321 22333332 221 1 12
Q ss_pred ccccCcE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 226 GYATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 226 ~Y~~AD~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+|+.... .|| ...++++|.++|.+.+.+
T Consensus 184 ~Y~~~~~l~~Id-------------g~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 184 HYKQQNKVITID-------------ASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHTTTCEEEEE-------------TTSCHHHHHHHHHHHHHT
T ss_pred HHHhcCCEEEEE-------------CCCCHHHHHHHHHHHHHH
Confidence 3543332 455 457999999999999875
No 57
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.51 E-value=1.3e-14 Score=128.88 Aligned_cols=160 Identities=15% Similarity=0.085 Sum_probs=92.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc----------eecCchHHHHHhCCCChHHHHHhhchhHhHH-------HHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVFEAAGGESAAKAFRESDEKGYQQ-------AET 154 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~----------~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~-------~e~ 154 (278)
.+.+|.|+|++||||||+|+.|++.+|++ ++++|++++.... ..+. ....|...|.. .-.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~-~~~~--~~~~g~~~f~~~~~~d~~~l~ 97 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS-EQKA--KALKGQFNFDHPDAFDNELIL 97 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH-HHHH--HHHTTCSCTTSGGGBCHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh-hhhh--hhccCCCCCCCcchhhHHHHH
Confidence 45689999999999999999999999998 7999998742111 0010 11111111110 111
Q ss_pred HHHHHHHc------------------------CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC----
Q 023749 155 EVLKQLSS------------------------MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS---- 205 (278)
Q Consensus 155 ~vl~~l~~------------------------~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r---- 205 (278)
+.|..+.. ....||..|.. +.....+.. ..+++|||++|++++.+| ..|
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~-~~~~~~~~~-~~d~vi~l~~~~e~~~~R~~~R~~~~ 175 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL-AFYSQEVRD-LFQMKLFVDTDADTRLSRRVLRDISE 175 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT-TTSSHHHHH-HCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec-cccCHHHHH-hcCeeEEEeCCHHHHHHHHHHHHHhh
Confidence 34455431 12345554421 111222111 157999999999999999 333
Q ss_pred -CCCCCChHHHHHHHHHHhh---------hccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 206 -GFPESEVLPQLFALYKEMR---------DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 206 -~rp~~~~~~~l~~~~~er~---------~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
++.. +.+.+.+..+. +.+..||++|+. .+|+ +.++++++++|.+++.+..+
T Consensus 176 rg~~~----e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~--------~id~-~~s~e~v~~~I~~~l~~~~~ 236 (252)
T 1uj2_A 176 RGRDL----EQILSQYITFVKPAFEEFCLPTKKYADVIIPR--------GADN-LVAINLIVQHIQDILNGGPS 236 (252)
T ss_dssp SCCCH----HHHHHHHHHTHHHHHHHHTGGGGGGCSEEEET--------GGGC-HHHHHHHHHHHHHHHHC---
T ss_pred hCCCH----HHHHHHHHHhccHHHHHHhhhhhhcCcEEEec--------CCCC-hhHHHHHHHHHHHHHccchh
Confidence 3322 23323222211 334469999942 2345 68999999999999987764
No 58
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.51 E-value=2.7e-13 Score=118.17 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=65.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI 168 (278)
|+|+|+|+|||||+|+|+.||+++|++++++++++++.... .. +.++. ..|...-.++-..++.+.....+++|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~-~~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYM-ERGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHH-hcCCcCCHHHHHHHHHHhhccCCceE
Confidence 68999999999999999999999999999999988764320 11 11111 12322222332333333333333333
Q ss_pred EeCCceeechhHHHhh----h-----CCcEEEEEcCHHHHHhh
Q 023749 169 CAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 169 ~~g~g~v~~~~~~~~L----~-----~~~vV~L~a~~e~l~~R 202 (278)
.. |++....+.+.| . .+.+|+|++|.+++.+|
T Consensus 80 lD--GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~R 120 (206)
T 3sr0_A 80 FD--GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIER 120 (206)
T ss_dssp EE--SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred ec--CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHH
Confidence 33 333332222222 2 35799999999999999
No 59
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.50 E-value=2.8e-13 Score=120.43 Aligned_cols=158 Identities=22% Similarity=0.257 Sum_probs=90.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChH------HHHHhh---------------
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAA------KAFRES--------------- 144 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~------ei~~~~--------------- 144 (278)
+++.|+|.|++||||||+++.|++.+|++++|.|.+++... | .++. +.....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l 86 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAG-ADLTDPAAIEKAAADAEIGVGSDPDVDAAFL 86 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHTCCEEECCCTTSCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcC-CCchhhHHHHHHHHhCCEEEeecCCCcEEEE
Confidence 46789999999999999999999999999999999876532 2 2211 111100
Q ss_pred -ch---hH---------------hHHHHH---HHHHHHHcC-CCEEEEeCC--ceeechhHHHhhhCCcEEEEEcCHHHH
Q 023749 145 -DE---KG---------------YQQAET---EVLKQLSSM-GRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMV 199 (278)
Q Consensus 145 -ge---~~---------------fr~~e~---~vl~~l~~~-~~~VI~~g~--g~v~~~~~~~~L~~~~vV~L~a~~e~l 199 (278)
|+ .. +..... .....++.. +.+|+. |- +.+..+. .++.|||++|++++
T Consensus 87 ~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~-GRd~gt~V~pd------a~lkifl~A~~e~R 159 (233)
T 3r20_A 87 AGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVE-GRDIGTVVLPD------ADVKIFLTASAEER 159 (233)
T ss_dssp TTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEE-ESSCCCCCCTT------CSEEEEEECCHHHH
T ss_pred CCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEe-cccceeEEcCC------CCEEEEEECCHHHH
Confidence 00 00 011111 112334444 555553 32 2222111 46899999999999
Q ss_pred Hhh--h---cCCCC--CCChHHHHHHHHHHhhhcc----ccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 200 ARM--D---HSGFP--ESEVLPQLFALYKEMRDGY----ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 200 ~~R--~---~r~rp--~~~~~~~l~~~~~er~~~Y----~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.+| + .++.. .++..+.+.+.-..+...| ..++ ++|| |++++++++++.|.+++..
T Consensus 160 a~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ID------------Ts~l~iee~v~~I~~~i~~ 227 (233)
T 3r20_A 160 ARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVD------------TSDMDQAQVIAHLLDLVTA 227 (233)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEE------------CTTSCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEE------------CCCCCHHHHHHHHHHHHHH
Confidence 998 2 12222 2223333433322222222 1243 7776 8999999999999999987
Q ss_pred cCC
Q 023749 267 SIS 269 (278)
Q Consensus 267 ~~~ 269 (278)
.+.
T Consensus 228 ~~~ 230 (233)
T 3r20_A 228 QAG 230 (233)
T ss_dssp ---
T ss_pred hhc
Confidence 654
No 60
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.50 E-value=7.3e-14 Score=119.41 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=88.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH----HhCCCChHHHHHhhc---h---h-HhHHHHH---HHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE----AAGGESAAKAFRESD---E---K-GYQQAET---EVL 157 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~----~~g~~~i~ei~~~~g---e---~-~fr~~e~---~vl 157 (278)
+|+.|+|+|++||||||+++.|++.++..+++.+.+.+. ..| ..+.++|...+ . . .|..... ..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIG-KLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHH-HHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999987666554332210 001 11222222110 0 0 0110000 122
Q ss_pred HHHHcCCCEEEEeCCc---e-------eechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcC-CCCCC-ChHHHHHHH
Q 023749 158 KQLSSMGRLVVCAGNG---A-------VQSSANLALLR-----HGISLWIDVPPGMVARM-DHS-GFPES-EVLPQLFAL 219 (278)
Q Consensus 158 ~~l~~~~~~VI~~g~g---~-------v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r-~rp~~-~~~~~l~~~ 219 (278)
......+..||..... . ......+..+. .+++|||++|++++.+| .++ .+... +..+.+...
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~~ 166 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRC 166 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHHH
Confidence 3333345566655210 0 01122222222 47899999999999999 433 22221 122344455
Q ss_pred HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
|.++...+....++||+ +.++++++++|.+.+...+.
T Consensus 167 ~~~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l~ 203 (215)
T 1nn5_A 167 FHQLMKDTTLNWKMVDA-------------SKSIEAVHEDIRVLSEDAIA 203 (215)
T ss_dssp HHHHTTCTTSCEEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 55544433223367773 57999999999998876553
No 61
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.50 E-value=8e-15 Score=126.81 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=35.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~ 130 (278)
++.|+|+|++||||||+++.|++.+|++++|+|+++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 56899999999999999999999999999999998875
No 62
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.50 E-value=1.2e-13 Score=119.10 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=94.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC------CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg------~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~ 164 (278)
-+|+.|+|+|++||||||+++.|++.++ +.++|.|.+.+...+ .. .++...++..|+.+.. ++..+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~--~~-~~~~~~r~~~~~~~~~-~~~~~l~~g 98 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK--DL-GFSEADRNENIRRIAE-VAKLFADSN 98 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT--TC-CSSHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc--cc-CCCHHHHHHHHHHHHH-HHHHHHHCC
Confidence 4688999999999999999999999886 778887776533221 00 1122334455555443 233444455
Q ss_pred CEEEEeCCceeechhHHHhhh--------------CCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHH----HHHHhhhc
Q 023749 165 RLVVCAGNGAVQSSANLALLR--------------HGISLWIDVPPGMVARMDHSGFPESEVLPQLFA----LYKEMRDG 226 (278)
Q Consensus 165 ~~VI~~g~g~v~~~~~~~~L~--------------~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~----~~~er~~~ 226 (278)
..||++.. . ....+++.++ .+++|||++|++++.+|..| + .....+. .+..+...
T Consensus 99 ~~VI~d~~-~-~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r--~---~~~~~r~~~~~~~~~~~~~ 171 (211)
T 1m7g_A 99 SIAITSFI-S-PYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPK--G---LYKKAREGVIKEFTGISAP 171 (211)
T ss_dssp CEEEEECC-C-CCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTT--C---HHHHHHHTSSSSCBTTTBC
T ss_pred CEEEEecC-C-ccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhH--H---HHHHHHhcchhhhhhhhhh
Confidence 66776532 1 1122332221 15799999999999998311 1 1111111 11123334
Q ss_pred cc---cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 227 YA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 227 Y~---~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|. .++++|| ++++++++++++|.+.+..
T Consensus 172 y~~~~~~~~~ID------------t~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 172 YEAPANPEVHVK------------NYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp CCCCSSCSEEEE------------CSSSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEE------------CCCCCHHHHHHHHHHHHHH
Confidence 44 3677877 6777999999999999975
No 63
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.49 E-value=2e-13 Score=123.73 Aligned_cols=153 Identities=15% Similarity=0.075 Sum_probs=90.0
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhch----------------hHhHH---
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDE----------------KGYQQ--- 151 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~ge----------------~~fr~--- 151 (278)
++.|+|+|++||||||+|+.|+ .+|++++|+|.+.++.+.. ....++....|. ..|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~ 153 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ 153 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence 5679999999999999999999 6999999999987654320 111111111111 11111
Q ss_pred ---HH-----------HHHHHHHHc-CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHH
Q 023749 152 ---AE-----------TEVLKQLSS-MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLP 214 (278)
Q Consensus 152 ---~e-----------~~vl~~l~~-~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~ 214 (278)
.+ ...+..+.. ....||..|. .+.+.++.. ..+.+|||++|++++.+| ..| +++. +
T Consensus 154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~--~l~~~~~~~-~~d~vI~l~a~~ev~~~Rl~~R~g~s~----e 226 (281)
T 2f6r_A 154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAA--MLLEAGWQS-MVHEVWTVVIPETEAVRRIVERDGLSE----A 226 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECT--TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHHCCCH----H
T ss_pred HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEec--hhhccchHH-hCCEEEEEcCCHHHHHHHHHHcCCCCH----H
Confidence 00 011122222 2346666654 222222211 157899999999999999 433 4432 2
Q ss_pred HHHHHHHHhh---hccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 215 QLFALYKEMR---DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 215 ~l~~~~~er~---~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.+.+.+.... ..+..||++|++ + .+++++.++|.+++..
T Consensus 227 ~~~~ri~~q~~~~~~~~~AD~vIdn------------~-~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 227 AAQSRLQSQMSGQQLVEQSNVVLST------------L-WESHVTQSQVEKAWNL 268 (281)
T ss_dssp HHHHHHHTSCCHHHHHHTCSEEEEC------------S-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHhhHhhCCEEEEC------------C-CCHHHHHHHHHHHHHH
Confidence 2322222221 112368999984 3 4999999999888764
No 64
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.48 E-value=1.4e-14 Score=122.29 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=88.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
+|+.|+|+|++||||||+++.|++.++ +.++|.|.+.+...+..... .......+..+. .+...+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~r~~~~~~~~-~~~~~~~~~g~~ 87 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT---REERLRHLKRIA-WIARLLARNGVI 87 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCC---HHHHHHHHHHHH-HHHHHHHTTTCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCC---hhhHHHHHHHHH-HHHHHHHhCCCE
Confidence 678999999999999999999999885 35678777644332211100 011111222111 112223344555
Q ss_pred EEEeCCceee---chhHHHhhh----CCcEEEEEcCHHHHHhh-hcCC--CCCCChHHHHHHHHHHhhhccc---cCcEE
Q 023749 167 VVCAGNGAVQ---SSANLALLR----HGISLWIDVPPGMVARM-DHSG--FPESEVLPQLFALYKEMRDGYA---TADVT 233 (278)
Q Consensus 167 VI~~g~g~v~---~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~--rp~~~~~~~l~~~~~er~~~Y~---~AD~v 233 (278)
|+..+. ... .+..++.++ .+++|||++|++++.+| .++. +...+ .+..++..+.. |. .++++
T Consensus 88 vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~---~~~~~~~~~~~-y~~~~~~~~~ 162 (186)
T 2yvu_A 88 VICSFV-SPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKG---ELENFTGITDP-YEPPENPQLV 162 (186)
T ss_dssp EEEECC-CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTT---CCSSCHHHHSC-CCCCSSCSEE
T ss_pred EEEeCc-cccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhc---chhhhhhhhhc-ccCCCCCcEE
Confidence 565432 211 111222233 35799999999999999 3210 00000 01111223333 54 47888
Q ss_pred EecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
|| +++.++++++++|.+.+.+.+
T Consensus 163 Id------------~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 163 LD------------TESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp EE------------TTTSCHHHHHHHHHHHHHHHC
T ss_pred EE------------CCCCCHHHHHHHHHHHHHHhc
Confidence 88 567899999999999987654
No 65
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.48 E-value=1.8e-13 Score=116.19 Aligned_cols=159 Identities=11% Similarity=0.098 Sum_probs=91.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHH-HHHhCCCChHHHHHhhchhHhHHH-H-----------HHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLV-FEAAGGESAAKAFRESDEKGYQQA-E-----------TEVL 157 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li-~~~~g~~~i~ei~~~~ge~~fr~~-e-----------~~vl 157 (278)
+|+.|+|+|++||||||+++.|++.+ |+++++.+... ....| ..+.++|...+ .|... + ...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g-~~i~~~~~~~~--~~~~~~~~~l~~~~r~~~~~~i 79 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTG-KMIDDYLTRKK--TYNDHIVNLLFCANRWEFASFI 79 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHH-HHHHHHHTSSC--CCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHH-HHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999998 68888765432 11112 22333332211 01000 0 0122
Q ss_pred HHHHcCCCEEEEeCCce---------eechhHHHhh-----hCCcEEEEEcCHHHHHhhhcCC--CCC-CChHHHHHHHH
Q 023749 158 KQLSSMGRLVVCAGNGA---------VQSSANLALL-----RHGISLWIDVPPGMVARMDHSG--FPE-SEVLPQLFALY 220 (278)
Q Consensus 158 ~~l~~~~~~VI~~g~g~---------v~~~~~~~~L-----~~~~vV~L~a~~e~l~~R~~r~--rp~-~~~~~~l~~~~ 220 (278)
......+..||..+... .........+ ..+++|||++|++++.+ .|+ +.. .+..+.+...|
T Consensus 80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~--~R~~d~~e~~~~~~rl~~~y 157 (204)
T 2v54_A 80 QEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR--NVGEEIYEDVTFQQKVLQEY 157 (204)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT--CCSSSTTCCSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh--hcCcccccHHHHHHHHHHHH
Confidence 22233455666543110 0111122211 25789999999999887 232 111 13344566666
Q ss_pred HHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 221 KEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 221 ~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
.+....|....++|| + +.++++++++|.+.+.+.+
T Consensus 158 ~~~~~~~~~~~~~Id------------~-~~~~~~v~~~i~~~l~~~l 192 (204)
T 2v54_A 158 KKMIEEGDIHWQIIS------------S-EFEEDVKKELIKNIVIEAI 192 (204)
T ss_dssp HHHHTTCSSCEEEEC------------T-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEE------------C-CCCHHHHHHHHHHHHHHHH
Confidence 665544433336776 2 5799999999999987655
No 66
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.47 E-value=1e-13 Score=138.90 Aligned_cols=156 Identities=18% Similarity=0.255 Sum_probs=99.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHH-hhchhHhHHHHHHHHHHHHcCCCE
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~~~g~~~i~ei~~-~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
.+++.|+|+|+|||||||+|+.|++.| |++++++|....+. + ......|. ..+++.|+.+. +++..+...+..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-~-L~~~~~fs~~dree~~r~i~-eva~~~l~~G~i 126 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIA-EVAKLFADAGLV 126 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-T-TTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-c-cCccccCChhhhHHHHHHHH-HHHHHHHhCCCE
Confidence 478899999999999999999999999 99987775332221 1 11111232 34666777653 344444455555
Q ss_pred EEEeCCceee---chhHHHhhh-C---CcEEEEEcCHHHHHhhhcCC-----CCCCChHHHHHHHHHHhhhccc---cCc
Q 023749 167 VVCAGNGAVQ---SSANLALLR-H---GISLWIDVPPGMVARMDHSG-----FPESEVLPQLFALYKEMRDGYA---TAD 231 (278)
Q Consensus 167 VI~~g~g~v~---~~~~~~~L~-~---~~vV~L~a~~e~l~~R~~r~-----rp~~~~~~~l~~~~~er~~~Y~---~AD 231 (278)
|+... .... .+..++.++ . .++|||++|++++.+|..++ |.. . + ..+..+...|. .+|
T Consensus 127 VI~d~-~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~-~----~-~~~~~~~~~Ye~p~~~d 199 (630)
T 1x6v_B 127 CITSF-ISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG-E----I-KGFTGIDSEYEKPEAPE 199 (630)
T ss_dssp EEEEC-CCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----------CBTTTBCCCCCSSCS
T ss_pred EEEeC-chhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh-h----H-HHHHHhhhhhcccCCCc
Confidence 66432 2222 122333343 2 35999999999999992221 111 0 1 12345566675 578
Q ss_pred EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
++|| |++.|+++++++|++++...-
T Consensus 200 lvID------------ts~~s~eevv~~Il~~L~~~~ 224 (630)
T 1x6v_B 200 LVLK------------TDSCDVNDCVQQVVELLQERD 224 (630)
T ss_dssp EEEE------------TTSSCHHHHHHHHHHHHHHTT
T ss_pred EEEE------------CCCCCHHHHHHHHHHHHHhcC
Confidence 8888 678899999999999997653
No 67
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.47 E-value=5.8e-13 Score=117.99 Aligned_cols=118 Identities=12% Similarity=0.078 Sum_probs=69.0
Q ss_pred HHHHhhhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHHHHH
Q 023749 82 KKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETE 155 (278)
Q Consensus 82 ~~~~~~~~~~-~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~e~~ 155 (278)
+-+.+..... .+++|+|+|+|||||||+|+.|++++|++++++|+++++.... .. +.+++.. |.....+.-..
T Consensus 17 ~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~ 95 (243)
T 3tlx_A 17 ELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLS 95 (243)
T ss_dssp HHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHH
Confidence 3334444323 6789999999999999999999999999999999998875421 11 1222221 21111111112
Q ss_pred HHHHHHcC---CCEEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh
Q 023749 156 VLKQLSSM---GRLVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 156 vl~~l~~~---~~~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R 202 (278)
++...... ...+|..| .+........ +. .+.+|||++|++++.+|
T Consensus 96 ~~~~~l~~~~~~~~~ildg--~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~R 152 (243)
T 3tlx_A 96 LVDEKLKTPQCKKGFILDG--YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNR 152 (243)
T ss_dssp HHHHHTTSGGGSSEEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred HHHHHHhcccccCCEEecC--CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHH
Confidence 22222211 22334333 2222222111 21 46899999999999999
No 68
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.47 E-value=9.3e-14 Score=116.46 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=86.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHH-HhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~-~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
-+|+.|+|+|++||||||+++.|++.+ |+++++.|..... ... .... +....++..|+..+.. ...+...+ .
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~ 78 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN-KNLG-FSPEDREENVRRIAEV-AKLFADAG-L 78 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT-TTCC-SSHHHHHHHHHHHHHH-HHHHHHTT-C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh-hccc-cccccHHHHHHHHHHH-HHHHHHCC-C
Confidence 368899999999999999999999998 9998855432221 111 0000 1112344556554431 11122333 3
Q ss_pred EEEeCCceee---chhHHHhhh-CC---cEEEEEcCHHHHHhh-hcCC-----CCCCChHHHHHHHHHHhhhcc---ccC
Q 023749 167 VVCAGNGAVQ---SSANLALLR-HG---ISLWIDVPPGMVARM-DHSG-----FPESEVLPQLFALYKEMRDGY---ATA 230 (278)
Q Consensus 167 VI~~g~g~v~---~~~~~~~L~-~~---~vV~L~a~~e~l~~R-~~r~-----rp~~~~~~~l~~~~~er~~~Y---~~A 230 (278)
++.++.-... ...+++.++ .+ ++|||++|++++.+| .++. ++.-... ......| +.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a 151 (179)
T 2pez_A 79 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-------TGIDSEYEKPEAP 151 (179)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-------BTTTBCCCCCSSC
T ss_pred EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-------ccCCccccCCCCC
Confidence 3333211111 112222332 33 789999999999999 3220 1100000 0011222 248
Q ss_pred cEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|++|+ +++.++++++++|.+.+.+
T Consensus 152 d~vid------------~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 152 ELVLK------------TDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp SEEEE------------TTTSCHHHHHHHHHHHHHH
T ss_pred cEEEE------------CCCCCHHHHHHHHHHHHHH
Confidence 88888 4678999999999999864
No 69
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.44 E-value=6.5e-12 Score=106.66 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+|+.|+|+|+|||||||+|+.|++.++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 57899999999999999999999999874
No 70
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.43 E-value=3.6e-13 Score=115.22 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=89.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
-+|..|+|+|++||||||+++.|++.+ |.. ++|.|.+.......... ..+.....++... .+...+...+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~ 98 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSF---KAEDRAENIRRVG-EVAKLFADAGI 98 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCS---SHHHHHHHHHHHH-HHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCc---ChHHHHHHHHHHH-HHHHHHHhCCc
Confidence 368899999999999999999999999 666 89988775422110100 0111112222221 23333334455
Q ss_pred EEEEeCCceeechhHHHhhh----C--CcEEEEEcCHHHHHhhh-c------C-CCCCCChHHHHHHHHHHhhhccc---
Q 023749 166 LVVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMD-H------S-GFPESEVLPQLFALYKEMRDGYA--- 228 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~L~----~--~~vV~L~a~~e~l~~R~-~------r-~rp~~~~~~~l~~~~~er~~~Y~--- 228 (278)
.++.+... ..+..++.++ . .++|||++|++++.+|. + | +... . ...+ ...|.
T Consensus 99 ~vi~~~~~--~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~-~-~~~~-------~~~~~~~~ 167 (200)
T 3uie_A 99 ICIASLIS--PYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIK-G-FTGI-------DDPYEPPL 167 (200)
T ss_dssp EEEEECCC--CCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSC-S-CBTT-------TBCCCCCS
T ss_pred eEEEecCC--chHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCC-C-CCCC-------CCcCcCCC
Confidence 56654322 1233444332 1 25699999999999982 1 1 1110 0 0011 12243
Q ss_pred cCcEEEecCcccccccccCCCC-CCHHHHHHHHHHHhhhc
Q 023749 229 TADVTVSLQKVASQLGYDDLDA-VTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 229 ~AD~vId~~~va~~~~~~Dts~-~tpeeva~~I~~~i~~~ 267 (278)
.++++|| |++ +|+++++++|++++...
T Consensus 168 ~~~~~id------------t~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 168 NCEISLG------------REGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp SCSEEEC------------CSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEe------------cCCCCCHHHHHHHHHHHHHHc
Confidence 4778887 677 79999999999999754
No 71
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.43 E-value=6.7e-14 Score=139.08 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=94.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC----C--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR----Y--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg----~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~ 165 (278)
+++.|+|+|++||||||+|+.|+++|+ + .++|.|.+.....+..... .....+.++.+ ..++..+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~---~~er~~~i~ri-~~v~~~~~~~g~ 470 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFT---REDRHTNIQRI-AFVATELTRAGA 470 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCS---HHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCC---hhHHHHHHHHH-HHHHHHHHhCCC
Confidence 467899999999999999999999987 3 4667676655433211110 11112222222 124455555566
Q ss_pred EEEEeCCceee--chhHHHhhh-CC--cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749 166 LVVCAGNGAVQ--SSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (278)
Q Consensus 166 ~VI~~g~g~v~--~~~~~~~L~-~~--~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~ 238 (278)
.||++.-.... ....++.++ .+ ++|||++|++++.+|..++.........+..++..+.++|. .+|++||
T Consensus 471 ~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~ID--- 547 (573)
T 1m8p_A 471 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVD--- 547 (573)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEEC---
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEE---
Confidence 67765211100 012233344 35 79999999999999932221000000012223345556554 5788887
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
|+++|+++++++|++++.+
T Consensus 548 ---------ts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 548 ---------FSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp ---------TTTSCHHHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHHHHh
Confidence 7889999999999999975
No 72
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.43 E-value=1.3e-12 Score=111.59 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=88.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH------------HHhC---CCC---hHHHHHhhchhHhHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF------------EAAG---GES---AAKAFRESDEKGYQQA 152 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~------------~~~g---~~~---i~ei~~~~ge~~fr~~ 152 (278)
.+|+.|+|+|++||||||+|+.|++.++.++++.|.+.+ +.+. ..+ ...+|...+...++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN-- 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH--
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence 368899999999999999999999999888777643221 1111 000 11122211111111
Q ss_pred HHHHHHHHHcCCCEEEEeCCc---eeec-------hhHHHh----h-hCCcEEEEEcCHHHHHhh-hcC-CCCCC-ChHH
Q 023749 153 ETEVLKQLSSMGRLVVCAGNG---AVQS-------SANLAL----L-RHGISLWIDVPPGMVARM-DHS-GFPES-EVLP 214 (278)
Q Consensus 153 e~~vl~~l~~~~~~VI~~g~g---~v~~-------~~~~~~----L-~~~~vV~L~a~~e~l~~R-~~r-~rp~~-~~~~ 214 (278)
.+......+..||..+.. .+.. ...... + ..+++|||++|++++.+| .++ .+... +...
T Consensus 86 ---~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~ 162 (212)
T 2wwf_A 86 ---EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQK 162 (212)
T ss_dssp ---HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHH
T ss_pred ---HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHH
Confidence 122222234456654321 1110 111111 1 257899999999999999 433 33221 1122
Q ss_pred HHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 215 ~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
.+..+|.++.. ..++++||+ +.++++++++|.+.+.+.
T Consensus 163 ~~~~~~~~~~~--~~~~~~Id~-------------~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 163 KIYETYKHFAH--EDYWINIDA-------------TRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHGGGGTT--CTTEEEEEC-------------SSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhc--cCCEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 23333433322 246788883 379999999999999766
No 73
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.40 E-value=1.2e-12 Score=116.26 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=68.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhchhHhHHHHHHHHHH-HHc---C
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQ-LSS---M 163 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~----~~i~ei~~~~ge~~fr~~e~~vl~~-l~~---~ 163 (278)
-+++.|+|+|||||||+|+.|++++|++++++++++++... + ..+.+++. .|.....++...++.+ +.. .
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccC
Confidence 46789999999999999999999999999999998877421 1 22333333 2443344444344433 322 2
Q ss_pred CCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh
Q 023749 164 GRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (278)
Q Consensus 164 ~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R 202 (278)
..+|++ |++....+.+.|. .+.+|||++|.+++.+|
T Consensus 87 ~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~R 127 (230)
T 3gmt_A 87 NGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIER 127 (230)
T ss_dssp TCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHH
T ss_pred CCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHH
Confidence 334443 3333333333343 46899999999999999
No 74
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.37 E-value=3.1e-12 Score=109.67 Aligned_cols=155 Identities=10% Similarity=0.056 Sum_probs=85.7
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhCC-----------------------ceecCchHHHHHhCCCChHHHHHhhch
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRY-----------------------YYFDSDSLVFEAAGGESAAKAFRESDE 146 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-----------------------~~iD~D~li~~~~g~~~i~ei~~~~ge 146 (278)
..+|+.|+|+|+|||||||+++.|++.++- .+++.|.+.+....+..+ +.....+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL-EFDKYANN 87 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE-EEEEETTE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE-EeHHhCCC
Confidence 357899999999999999999999998842 223333332221110100 00000011
Q ss_pred hHhHHHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhh---C--C-cEEEEE-cCHHHHHhh-hcCCCCCCChHHHHHH
Q 023749 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---H--G-ISLWID-VPPGMVARM-DHSGFPESEVLPQLFA 218 (278)
Q Consensus 147 ~~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~---~--~-~vV~L~-a~~e~l~~R-~~r~rp~~~~~~~l~~ 218 (278)
..... ...+..+...+..||..+ +......++ . . ++|||+ +|++++.+| ..|++.. .+.+.+
T Consensus 88 ~~~~~--~~~i~~~l~~g~~vi~d~-----~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~---~~~i~~ 157 (204)
T 2qor_A 88 FYGTL--KSEYDLAVGEGKICLFEM-----NINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEK---PEEINK 157 (204)
T ss_dssp EEEEE--HHHHHHHHHTTCEEEEEC-----CHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSC---HHHHHH
T ss_pred eecCC--HHHHHHHHHcCCeEEEEE-----CHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCC---HHHHHH
Confidence 00111 112333333344444332 112222222 2 3 789999 999999999 6666532 233332
Q ss_pred -HHHHhhhc---c-ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 219 -LYKEMRDG---Y-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 219 -~~~er~~~---Y-~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
+...+.+. | ..+|.+|++ + ++++++++|.+++.+.++
T Consensus 158 rl~~~~~~~~~~~~~~~d~vi~n-------------~-~~e~~~~~i~~~i~~~~~ 199 (204)
T 2qor_A 158 RMQELTREMDEADKVGFNYFIVN-------------D-DLARTYAELREYLLGSYP 199 (204)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEC-------------S-SHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhhhccCcEEEEC-------------c-CHHHHHHHHHHHHHHHhh
Confidence 22222232 3 368998873 2 899999999999987764
No 75
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.36 E-value=6.4e-12 Score=110.67 Aligned_cols=162 Identities=10% Similarity=0.089 Sum_probs=87.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCch--------HHHHHhCCCChHHHHHhhchhH-hHHHHHHH---
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS--------LVFEAAGGESAAKAFRESDEKG-YQQAETEV--- 156 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~--------li~~~~g~~~i~ei~~~~ge~~-fr~~e~~v--- 156 (278)
-+|+.|+|.|++||||||+++.|++.++ +.++.+.. .+.+.+.... .+....+.. |.......
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~---~~~~~~~~ll~~a~r~~~~~~ 100 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN---DMDIRTEAMLFAASRREHLVL 100 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999996 45543311 1222111000 000000000 11100011
Q ss_pred -HHHHHcCCCEEEEe----------CCceeechhHHHh---h-----hCCcEEEEEcCHHHHHhh-hcCCCC----CCC-
Q 023749 157 -LKQLSSMGRLVVCA----------GNGAVQSSANLAL---L-----RHGISLWIDVPPGMVARM-DHSGFP----ESE- 211 (278)
Q Consensus 157 -l~~l~~~~~~VI~~----------g~g~v~~~~~~~~---L-----~~~~vV~L~a~~e~l~~R-~~r~rp----~~~- 211 (278)
+......+..||+. |.+--+....+.. + ..+++|||++|++++.+| ..|++. ..+
T Consensus 101 ~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~ 180 (229)
T 4eaq_A 101 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 180 (229)
T ss_dssp CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence 11222345567766 4322222222111 1 257899999999999999 555432 111
Q ss_pred --hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 212 --VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 212 --~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
..+.+...|.+....|...-.+|| .+.++|++.++|.+.+.+.+
T Consensus 181 ~~~~~rv~~~y~~l~~~~~~~~~vID-------------a~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 181 LKFHEKVIEGYQEIIHNESQRFKSVN-------------ADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp HHHHHHHHHHHHHHTTTCTTTEEEEE-------------TTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe-------------CCCCHHHHHHHHHHHHHHHh
Confidence 122333445444433332335677 35799999999999998654
No 76
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=7.4e-12 Score=105.54 Aligned_cols=151 Identities=12% Similarity=-0.006 Sum_probs=84.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC-ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~-~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
|..|+|+|++||||||+++.|++.++. .+++.|.+.+....+..............+..++.. .......+..++..+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence 568999999999999999999998865 788888765432211111111000111223333222 222222333333333
Q ss_pred CceeechhH----HHhhh------CCcEEEEEcCHHHHHhh-hcCCCC-CCChHHHHHHHHHHhhhccccCcEEEecCcc
Q 023749 172 NGAVQSSAN----LALLR------HGISLWIDVPPGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKV 239 (278)
Q Consensus 172 ~g~v~~~~~----~~~L~------~~~vV~L~a~~e~l~~R-~~r~rp-~~~~~~~l~~~~~er~~~Y~~AD~vId~~~v 239 (278)
+..+.. .+.++ ...++||++|++++.+| ..|... .-+. ..+.. ++++...+..++.+|+
T Consensus 81 ---~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~~~~~~~~~~~~~ii~---- 151 (189)
T 2bdt_A 81 ---IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-VEEFESKGIDERYFYN---- 151 (189)
T ss_dssp ---CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-HHHHHHTTCCTTSEEE----
T ss_pred ---ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-HHHHhhcCCCccEEEe----
Confidence 122221 12221 12468999999999999 555432 1111 22334 5666666555667777
Q ss_pred cccccccCCCCC---CHHHHHHHHH
Q 023749 240 ASQLGYDDLDAV---TTEDMTLEVK 261 (278)
Q Consensus 240 a~~~~~~Dts~~---tpeeva~~I~ 261 (278)
|+.. ++++++++|.
T Consensus 152 --------tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 152 --------TSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp --------CSSSCGGGHHHHHHHHH
T ss_pred --------CCCCChhhHHHHHHHHh
Confidence 5666 8999999998
No 77
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.32 E-value=7.5e-12 Score=107.13 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=92.0
Q ss_pred hhccC-CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCCh-H------HHHHhhchhHhHHHHHHHHH
Q 023749 88 STELK-GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESA-A------KAFRESDEKGYQQAETEVLK 158 (278)
Q Consensus 88 ~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~i-~------ei~~~~ge~~fr~~e~~vl~ 158 (278)
.+.+. +..|+|+|++||||||+++.|++.+ ++.+++.|.++..... ... . ++........+.+.-...+.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~ 93 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-IETDKNGFLQYDVLEALNMEKMMSAISCWME 93 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-SCBCTTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-hhccccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence 34443 6689999999999999999999988 8999999987642211 000 0 00000000111111011122
Q ss_pred HHH-----------cCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHH----HHHH
Q 023749 159 QLS-----------SMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLF----ALYK 221 (278)
Q Consensus 159 ~l~-----------~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~----~~~~ 221 (278)
... .....||..|. .... ...... .+.+|||++|++++.+| ..|++..++..+.+. ..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~vi~eg~--~~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~ 170 (207)
T 2qt1_A 94 SARHSVVSTDQESAEEIPILIIEGF--LLFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYL 170 (207)
T ss_dssp HHTTSSCCC-----CCCCEEEEECT--TCTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHH
T ss_pred CCCCCCcCCCeeecCCCCEEEEeeh--HHcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHH
Confidence 110 11345555552 2211 111122 57899999999999999 566654333222232 2333
Q ss_pred Hhhhccc-cCcEE--EecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 222 EMRDGYA-TADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 222 er~~~Y~-~AD~v--Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
++...|. .+|.+ ||+ +.+++++.++|.+.+.+.
T Consensus 171 ~~~~~~~~~~~~v~~Id~-------------~~~~eev~~~I~~~l~~~ 206 (207)
T 2qt1_A 171 KYRQEMQDITWEVVYLDG-------------TKSEEDLFLQVYEDLIQE 206 (207)
T ss_dssp HHHHHGGGCSSCCEEEET-------------TSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCeEEEecC-------------CCCHHHHHHHHHHHHHhh
Confidence 3333344 46655 663 479999999999998754
No 78
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.32 E-value=2.2e-12 Score=127.50 Aligned_cols=157 Identities=17% Similarity=0.216 Sum_probs=92.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC-----ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-----~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~ 166 (278)
.++.|+|+|++||||||+|+.|++.|+. .++|.|.+.+...+..... .......++.+. .+...+...+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~---~~er~~~l~~i~-~~~~~~l~~G~~ 446 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFS---KEDRITNILRVG-FVASEIVKHNGV 446 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSS---HHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccccccc---HHHHHHHHHHHH-HHHHHHHhCCCE
Confidence 3678999999999999999999999874 7889887765544311111 011111122211 123333344445
Q ss_pred EEEeCCceeechhHHH----hhh-CC-cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749 167 VVCAGNGAVQSSANLA----LLR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK 238 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~----~L~-~~-~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~ 238 (278)
||..+. ...+..++ .++ .+ ++|||++|++++.+|..|+....+....+..++..+.+++. .+|++||
T Consensus 447 VI~d~~--~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivID--- 521 (546)
T 2gks_A 447 VICALV--SPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVD--- 521 (546)
T ss_dssp EEEECC--CCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEE---
T ss_pred EEEEcC--CCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEE---
Confidence 554421 12222222 232 35 79999999999999932321001111234334444445443 5899998
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 239 VASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 239 va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
+++.|+++++++|.+++.+
T Consensus 522 ---------ts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 522 ---------TTKLTPEESALKILEFLKK 540 (546)
T ss_dssp ---------TTTSCHHHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999864
No 79
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.26 E-value=2e-12 Score=120.72 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=85.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--------------HHHHhCCC-----ChHHH-HHhhchhHhHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ 151 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--------------i~~~~g~~-----~i~ei-~~~~ge~~fr~ 151 (278)
+++.|+|+||+||||||+|..||++++..+||+|.+ .++..| . ++.+. ...++...|++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence 456899999999999999999999999999999997 344433 2 33444 45667788999
Q ss_pred HHHHHHHHHHcCCCEEEEeCCceeechhHHH---------------------hhh-CCcEEEEEcCHHHHHhh-hcC
Q 023749 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA---------------------LLR-HGISLWIDVPPGMVARM-DHS 205 (278)
Q Consensus 152 ~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~---------------------~L~-~~~vV~L~a~~e~l~~R-~~r 205 (278)
.+..++.++...+..+|.+||+.++....+. .++ ..++|||+++.+++.+| +.|
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 194 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence 8888898888778888889886433222211 122 34789999999999999 554
No 80
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.25 E-value=2.1e-11 Score=102.47 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=92.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCc--eecCchHHHHHhCCCChHHHHHhhchhH---hHHHHHHHHHHHHcCCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESDEKG---YQQAETEVLKQLSSMGR 165 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~D~li~~~~g~~~i~ei~~~~ge~~---fr~~e~~vl~~l~~~~~ 165 (278)
-+|..|+|+|++||||||+++.|+..++.. +++.|++...... .....++.+.+... +..+.. ........+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~ 84 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQIAAD-VAGRYAKEGY 84 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHHHHH-HHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHHHHHH-HHHHHhccCC
Confidence 358899999999999999999999876555 7888887543221 11111111111110 111100 0111122222
Q ss_pred EEEEeCCceeechhHHHhh---h-CCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcc
Q 023749 166 LVVCAGNGAVQSSANLALL---R-HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKV 239 (278)
Q Consensus 166 ~VI~~g~g~v~~~~~~~~L---~-~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~v 239 (278)
.++..+ +....+++.+ . ....+++.++.+++..| ..|+.+. .+ .+.+..+++.+.+.|..++++|+
T Consensus 85 ~~~~~~---~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld-~~~~~~~~~~~~~l~~~~~~~i~---- 156 (191)
T 1zp6_A 85 FVILDG---VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSD-PLVVADLHSQFADLGAFEHHVLP---- 156 (191)
T ss_dssp EEEECS---CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC-HHHHHHHHHHTTCCGGGGGGEEE----
T ss_pred eEEEec---cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCC-HHHHHHHHHHHhccCcccccEEE----
Confidence 333221 1111122222 2 22579999999999999 4444332 12 34566677777776655667777
Q ss_pred cccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 240 ASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 240 a~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
|++.++++++++|.+.+...
T Consensus 157 --------t~~~~~~~~~~~i~~~l~~~ 176 (191)
T 1zp6_A 157 --------VSGKDTDQALQSAINALQSG 176 (191)
T ss_dssp --------CTTCCTTTTTTTTHHHHHHT
T ss_pred --------CCCCCHHHHHHHHHHHHHhh
Confidence 56789999999999988643
No 81
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.22 E-value=5.8e-10 Score=97.40 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=87.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCc--------hHHHHHhC-C----CCh-HH--HHHhhchhHhHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSD--------SLVFEAAG-G----ESA-AK--AFRESDEKGYQQ 151 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D--------~li~~~~g-~----~~i-~e--i~~~~ge~~fr~ 151 (278)
.+|+.|+|.|++||||||+++.|++.|+ +.++.+. ..+++.+. + .+. .+ +|.. ..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a---~R~~~ 80 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFA---ARAQH 80 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHH---HHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHH---HHHHH
Confidence 5789999999999999999999999884 4443221 11222111 0 000 00 0000 01111
Q ss_pred HHHHHHHHHHcCCCEEEEeCC----------ceeechhHH---Hh-----hhCCcEEEEEcCHHHHHhh-hcCC---CCC
Q 023749 152 AETEVLKQLSSMGRLVVCAGN----------GAVQSSANL---AL-----LRHGISLWIDVPPGMVARM-DHSG---FPE 209 (278)
Q Consensus 152 ~e~~vl~~l~~~~~~VI~~g~----------g~v~~~~~~---~~-----L~~~~vV~L~a~~e~l~~R-~~r~---rp~ 209 (278)
.+. ++......+..||+... +--.+.... .. .+++++|||++|++++.+| ..|+ +.+
T Consensus 81 ~~~-~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E 159 (213)
T 4edh_A 81 LAG-VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFE 159 (213)
T ss_dssp HHH-THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTT
T ss_pred HHH-HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccc
Confidence 111 12222334667776531 000111111 11 1268999999999999999 5553 222
Q ss_pred CC---hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 210 SE---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 210 ~~---~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
.+ ..+.+...|.+....|...-++|| .+.++|++.++|.+.+.+.+
T Consensus 160 ~~~~~~~~rv~~~y~~l~~~~~~~~~vID-------------a~~s~eeV~~~I~~~l~~~l 208 (213)
T 4edh_A 160 QEDRRFFEAVRQTYLQRAAQAPERYQVLD-------------AGLPLAEVQAGLDRLLPNLL 208 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCTTTEEEEE-------------TTSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCcEEEEe-------------CCCCHHHHHHHHHHHHHHHH
Confidence 21 223344445544333333346777 35799999999999887654
No 82
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.21 E-value=1e-10 Score=103.02 Aligned_cols=107 Identities=10% Similarity=0.092 Sum_probs=62.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCCh----HHHHHhhchhHhHHHHHHHH-HHHHc--C
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESA----AKAFRESDEKGYQQAETEVL-KQLSS--M 163 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i----~ei~~~~ge~~fr~~e~~vl-~~l~~--~ 163 (278)
++..|+|+|++||||||+++.|++++|+..++.++++.... .+..+ ..++. .+...+.....+.+ ..+.. .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~v~~~l~~~l~~~~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIE-KSLLVPDHVITRLMMSELENRRG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTCTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCC
Confidence 46799999999999999999999999999999888765422 10111 11221 12111121111222 22321 2
Q ss_pred CCEEEEeCCceeechhHHHhh---h-CCcEEEEEcCHHHHHhh
Q 023749 164 GRLVVCAGNGAVQSSANLALL---R-HGISLWIDVPPGMVARM 202 (278)
Q Consensus 164 ~~~VI~~g~g~v~~~~~~~~L---~-~~~vV~L~a~~e~l~~R 202 (278)
..+++ .|.. ........+ . .+++|||++|++++.+|
T Consensus 105 ~~~il-~g~~--~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r 144 (246)
T 2bbw_A 105 QHWLL-DGFP--RTLGQAEALDKICEVDLVISLNIPFETLKDR 144 (246)
T ss_dssp SCEEE-ESCC--CSHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred CeEEE-ECCC--CCHHHHHHHHhhcCCCEEEEEECCHHHHHHH
Confidence 23333 2311 111111222 2 57899999999999888
No 83
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.19 E-value=2.4e-10 Score=99.24 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=81.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh--CCceecC----c----hHHHHHh-CCCChH---H--HHHhhchhHhHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDS----D----SLVFEAA-GGESAA---K--AFRESDEKGYQQAETE 155 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~----D----~li~~~~-g~~~i~---e--i~~~~ge~~fr~~e~~ 155 (278)
+|+-|+|.|+.||||||+++.|++.| |++++-+ + ..+.+.+ ++..+. + +|...+ +...+..
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R---~~~~~~~ 77 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASR---REHLVLK 77 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHH---HHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHH---HHHHHHH
Confidence 46789999999999999999999998 4554421 1 1122211 101100 0 011100 1111111
Q ss_pred HHHHHHcCCCEEEEeCCc---ee-------echhH---HHh-----hhCCcEEEEEcCHHHHHhh-hcCCCCCC----Ch
Q 023749 156 VLKQLSSMGRLVVCAGNG---AV-------QSSAN---LAL-----LRHGISLWIDVPPGMVARM-DHSGFPES----EV 212 (278)
Q Consensus 156 vl~~l~~~~~~VI~~g~g---~v-------~~~~~---~~~-----L~~~~vV~L~a~~e~l~~R-~~r~rp~~----~~ 212 (278)
+... ...+..||+...- .. .+... +.. ++++++|||++|+++..+| .+|++..+ +.
T Consensus 78 i~p~-l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~ 156 (205)
T 4hlc_A 78 VIPA-LKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 156 (205)
T ss_dssp HHHH-HHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHH
T ss_pred HHHH-HHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccC
Confidence 2222 2346677765310 00 01111 111 1268999999999999999 66654321 11
Q ss_pred HHHHHH---HHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 213 LPQLFA---LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 213 ~~~l~~---~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
.+.+++ .|.+....+..-=.+|| .+.++|++.++|.+.+.+.+.
T Consensus 157 ~~f~~~v~~~Y~~l~~~~~~~~~~ID-------------a~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 157 LKFHEKVIEGYQEIIHNESQRFKSVN-------------ADQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEE-------------TTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEE-------------CCCCHHHHHHHHHHHHHHHHh
Confidence 222222 33332211111124666 457999999999999887654
No 84
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.19 E-value=9.6e-11 Score=104.29 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD 123 (278)
.++.|+|.|++||||||+++.|++.| ++.++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 57899999999999999999999998 676664
No 85
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.18 E-value=6.5e-10 Score=98.75 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=84.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC----hHHHHHhh------c--hh--HhHHHHHH-
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES----AAKAFRES------D--EK--GYQQAETE- 155 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~----i~ei~~~~------g--e~--~fr~~e~~- 155 (278)
.+|+.|+|.|++||||||+++.|++.|+...++.-.+.++..| .. +.+++... . .+ .|.....+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~-t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG-TLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS-SHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC-CHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999884332220000000001 11 11111100 0 00 01111111
Q ss_pred ---HHHHHHcCCCEEEEeCC----------ceeechhHH---H--h---hhCCcEEEEEcCHHHHHhh-hcCC---CCCC
Q 023749 156 ---VLKQLSSMGRLVVCAGN----------GAVQSSANL---A--L---LRHGISLWIDVPPGMVARM-DHSG---FPES 210 (278)
Q Consensus 156 ---vl~~l~~~~~~VI~~g~----------g~v~~~~~~---~--~---L~~~~vV~L~a~~e~l~~R-~~r~---rp~~ 210 (278)
++......+..||+... +--++.... . . ++++++|||++|++++.+| .+|+ +.+.
T Consensus 104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~ 183 (236)
T 3lv8_A 104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEK 183 (236)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTT
T ss_pred HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence 12222234667776521 000111111 1 1 1268999999999999999 5554 2222
Q ss_pred C---hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 211 E---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 211 ~---~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
+ ..+.+.+.|.+....+.. .++|| .+.++|++.++|.+.+.+.+.
T Consensus 184 ~~~~~~~rv~~~y~~la~~~~~-~~vID-------------a~~sieeV~~~I~~~l~~~l~ 231 (236)
T 3lv8_A 184 MDISFFERARERYLELANSDDS-VVMID-------------AAQSIEQVTADIRRALQDWLS 231 (236)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTT-EEEEE-------------TTSCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHCCC-EEEEe-------------CCCCHHHHHHHHHHHHHHHHH
Confidence 2 223344444443332222 46777 357999999999999987663
No 86
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.18 E-value=9.2e-11 Score=105.75 Aligned_cols=111 Identities=11% Similarity=0.112 Sum_probs=66.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCChH--HHHHhhchhHhHHHHHHHHHHHH---cCCCE
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL 166 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~i~--ei~~~~ge~~fr~~e~~vl~~l~---~~~~~ 166 (278)
++.|+|+|+|||||||+|+.|++++ |++++++|.+.+...+ .... .-+...++..+.+.-...+.... ..+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence 4689999999999999999999985 9999999977665543 2110 01111122223222223334444 33444
Q ss_pred EEEeCCceeechhHHHhh----h-CC---cEEEEEcCHHHHHhh-hcCC
Q 023749 167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSG 206 (278)
Q Consensus 167 VI~~g~g~v~~~~~~~~L----~-~~---~vV~L~a~~e~l~~R-~~r~ 206 (278)
||..+. ......++.+ + .+ .+|||++|++++.+| ..|+
T Consensus 81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp EEECSC--CCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred EEEeCC--CCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 554332 2222222212 2 22 689999999999999 5554
No 87
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.17 E-value=1.6e-10 Score=102.14 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=81.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh-------CCceecCchHHHHHhCC---CChHHHHHhhc-----------hhHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEAAGG---ESAAKAFRESD-----------EKGY 149 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L-------g~~~iD~D~li~~~~g~---~~i~ei~~~~g-----------e~~f 149 (278)
.+|+.|+|.|++||||||+++.|++.| |+.++-+ ++..+. ..+.+++.... ...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~ 98 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----REPGGTRLGETLREILLNQPMDLETEALLMFAGRR 98 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999998 4443311 000000 01122221100 0111
Q ss_pred HHHHHHHHHHHHcCCCEEEEeCC----------ceeechhHHH-----h---hhCCcEEEEEcCHHHHHhh-hcCC---C
Q 023749 150 QQAETEVLKQLSSMGRLVVCAGN----------GAVQSSANLA-----L---LRHGISLWIDVPPGMVARM-DHSG---F 207 (278)
Q Consensus 150 r~~e~~vl~~l~~~~~~VI~~g~----------g~v~~~~~~~-----~---L~~~~vV~L~a~~e~l~~R-~~r~---r 207 (278)
...+. .+......+..||+... +--.+.+... . ++++++|||++|++++.+| .+|+ +
T Consensus 99 ~~~~~-~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr 177 (227)
T 3v9p_A 99 EHLAL-VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDK 177 (227)
T ss_dssp HHHHH-THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC--
T ss_pred HHHHH-HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccc
Confidence 11111 12222334667776531 0001111111 1 1268999999999999999 5553 2
Q ss_pred CCCChHH---HHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749 208 PESEVLP---QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA 266 (278)
Q Consensus 208 p~~~~~~---~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~ 266 (278)
.+.+..+ .+.+.|.+....|...-++|| .+.++|++.++|.+.+..
T Consensus 178 ~E~~~~ef~~rv~~~Y~~la~~~~~~~~vID-------------a~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 178 FESESDAFFARTRAEYLRRAQEAPHRFVIVD-------------SSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHCTTTEEEEE-------------TTSCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCCEEEEe-------------CCCCHHHHHHHHHHHHHh
Confidence 2221123 333344443332322345777 358999999999998864
No 88
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.16 E-value=8.9e-11 Score=115.28 Aligned_cols=111 Identities=21% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-----cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHH------
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-----DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL------ 160 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-----D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l------ 160 (278)
.+.+|+++|+|||||||+|+.|++.|++.++ +.|+++++..+.....++|...+++.|+..+..+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~ 113 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSY 113 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999977664 55898888877333456777777777765444322211
Q ss_pred H--cCCCEEE-Ee-CCceeechhHHHhhh-CCc---EEEEEcC-HHHHHhh
Q 023749 161 S--SMGRLVV-CA-GNGAVQSSANLALLR-HGI---SLWIDVP-PGMVARM 202 (278)
Q Consensus 161 ~--~~~~~VI-~~-g~g~v~~~~~~~~L~-~~~---vV~L~a~-~e~l~~R 202 (278)
. ..+..|| ++ +.+.......++.++ .+. .|++.|+ ++.+.+|
T Consensus 114 L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~r 164 (520)
T 2axn_A 114 LAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASN 164 (520)
T ss_dssp HHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred HHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHH
Confidence 1 2344455 32 222222222333343 342 4555566 6666676
No 89
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.12 E-value=2.4e-09 Score=92.15 Aligned_cols=160 Identities=16% Similarity=0.081 Sum_probs=81.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCceecC----c-hH---HHHHh--CCCCh-HHHHHhhchhHhHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS----D-SL---VFEAA--GGESA-AKAFRESDEKGYQQAETEVLKQ 159 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~----D-~l---i~~~~--g~~~i-~ei~~~~ge~~fr~~e~~vl~~ 159 (278)
+.|+|.|+.||||||+++.|++.| |++++-+ + .+ +.+.. +..+. .+.+-- - ....+.... +..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~-~-a~r~~~~~~-I~~ 77 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLF-L-ASRNLLVTE-IKQ 77 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHH-H-HHHHHHHHH-HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHH-H-HHHHHHHHH-HHH
Confidence 468999999999999999999987 6665432 1 11 11110 00110 000000 0 000111112 222
Q ss_pred HHcCCCEEEEeCC----------ceeechhHHHh--------hhCCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHH
Q 023749 160 LSSMGRLVVCAGN----------GAVQSSANLAL--------LRHGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFAL 219 (278)
Q Consensus 160 l~~~~~~VI~~g~----------g~v~~~~~~~~--------L~~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~ 219 (278)
....+.+||+... +.-........ +.++++|||++|+++..+| ..++|-.. +..+.+++.
T Consensus 78 ~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~ 157 (197)
T 3hjn_A 78 YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREG 157 (197)
T ss_dssp HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHH
T ss_pred HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHHHHH
Confidence 2345667776531 00011111111 1268999999999999999 54444322 222334444
Q ss_pred HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
|.+....+..-=.+|| .+.++|++.++|.+.+.+.++
T Consensus 158 y~~la~~~~~~~~~ID-------------a~~~~eeV~~~I~~~i~~rl~ 194 (197)
T 3hjn_A 158 YLVLAREHPERIVVLD-------------GKRSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHHCTTTEEEEE-------------TTSCHHHHHHHHHHHHSCC--
T ss_pred HHHHHHhCCCCEEEEc-------------CCCCHHHHHHHHHHHHHHHhC
Confidence 4443222211124566 458999999999999987653
No 90
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.11 E-value=2.9e-10 Score=100.93 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=67.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCchHH---------HHHhCCCChHHHHHhhchhHhHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLV---------FEAAGGESAAKAFRESDEKGYQQAETEVLKQL 160 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~li---------~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l 160 (278)
.++.|+|+|+|||||||+|+.|++.++ +.++|.|.+. ....| ..+.+++.. .+......++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTKL 105 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHHH
Confidence 477899999999999999999999997 6788998873 22334 444443332 1222333445555
Q ss_pred HcC-CCEEEEeCCcee-echhHHHhhh-CCc---EEEEEcCHHHHHhh
Q 023749 161 SSM-GRLVVCAGNGAV-QSSANLALLR-HGI---SLWIDVPPGMVARM 202 (278)
Q Consensus 161 ~~~-~~~VI~~g~g~v-~~~~~~~~L~-~~~---vV~L~a~~e~l~~R 202 (278)
... .++|++.+.+.. ........++ .+. ++|+++|++++.+|
T Consensus 106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R 153 (253)
T 2p5t_B 106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLS 153 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHH
Confidence 544 466776443322 2233344454 453 56889999999988
No 91
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.09 E-value=1.3e-10 Score=102.48 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC----ceec-C----chHHHHHhCCCChHHHHHhh------chh-HhHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY----YYFD-S----DSLVFEAAGGESAAKAFRES------DEK-GYQQAETE 155 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~----~~iD-~----D~li~~~~g~~~i~ei~~~~------ge~-~fr~~e~~ 155 (278)
+|+.|+|.|++||||||+++.|++.|+. .++. + +.-+-+ .+.+++... -+. .|..-..+
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~-----~ir~~l~~~~~~~~~~e~llf~a~R~~ 94 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE-----SVRNLLFKAQGLDSLSELLFFIAMRRE 94 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH-----HHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH-----HHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999998765 3322 1 111100 011111110 000 12111111
Q ss_pred H----HHHHHcCCCEEEEeCC----------ceeechhHHH-----h--hhCCcEEEEEcCHHHHHhhhcCCCCCC---C
Q 023749 156 V----LKQLSSMGRLVVCAGN----------GAVQSSANLA-----L--LRHGISLWIDVPPGMVARMDHSGFPES---E 211 (278)
Q Consensus 156 v----l~~l~~~~~~VI~~g~----------g~v~~~~~~~-----~--L~~~~vV~L~a~~e~l~~R~~r~rp~~---~ 211 (278)
. +......+..||+... +--.+.+... . .+++++|||++|+++..+|.+++|.+. +
T Consensus 95 ~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rdr~E~~~~e 174 (223)
T 3ld9_A 95 HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYEFADME 174 (223)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC----------------CHH
T ss_pred HHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccCccccchHH
Confidence 1 2222334667776531 0001111111 1 137899999999999999942333322 2
Q ss_pred hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749 212 VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS 267 (278)
Q Consensus 212 ~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~ 267 (278)
..+.+++.|.+....|....++||. +.++|++ ++|.+.+.+.
T Consensus 175 ~~~rv~~~y~~la~~~~~~~~vIDa-------------~~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 175 FYYRVRDGFYDIAKKNPHRCHVITD-------------KSETYDI-DDINFVHLEV 216 (223)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEES-------------SCSSSCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcC-------------CCCHHHH-HHHHHHHHHH
Confidence 3344555666655444335678884 4677777 7777776643
No 92
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.05 E-value=1e-09 Score=95.84 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CC-ceecC----chHHHHHhCCCChHHHHHhh--------ch--h--HhHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY-YYFDS----DSLVFEAAGGESAAKAFRES--------DE--K--GYQQ 151 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~-~~iD~----D~li~~~~g~~~i~ei~~~~--------ge--~--~fr~ 151 (278)
+|+.|+|.|++||||||+++.|++.| |+ .++-+ +.-+ | ..+.+++... .. + .|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~----g-~~ir~~l~~~~~~~~~~~~~~~e~lL~~A 76 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL----A-EKLRSLLLDIKSVGDEVITDKAEVLMFYA 76 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH----H-HHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH----H-HHHHHHHhcccccccccCChHHHHHHHHH
Confidence 58999999999999999999999988 44 22111 1111 0 0111222100 00 0 1111
Q ss_pred HHHH----HHHHHHcCCCEEEEeCC----------ceeechhHH---H--h---hhCCcEEEEEcCHHHHHhh-hcCCC-
Q 023749 152 AETE----VLKQLSSMGRLVVCAGN----------GAVQSSANL---A--L---LRHGISLWIDVPPGMVARM-DHSGF- 207 (278)
Q Consensus 152 ~e~~----vl~~l~~~~~~VI~~g~----------g~v~~~~~~---~--~---L~~~~vV~L~a~~e~l~~R-~~r~r- 207 (278)
...+ ++......+.+||+... +--.+.... + . ++++++|||++|+++..+| .+|+.
T Consensus 77 ~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~ 156 (213)
T 4tmk_A 77 ARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL 156 (213)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 1111 12222345667777531 100111111 1 1 1268999999999999999 44432
Q ss_pred --CCCChHHH---HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749 208 --PESEVLPQ---LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI 268 (278)
Q Consensus 208 --p~~~~~~~---l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~ 268 (278)
.+.+..+. +...|.+....+ ..-.+|| .+.++|++.++|.+.+.+.+
T Consensus 157 dr~E~~~~~f~~rv~~~y~~la~~~-~~~~vID-------------a~~s~eeV~~~I~~~l~~~l 208 (213)
T 4tmk_A 157 DRIEQESFDFFNRTRARYLELAAQD-KSIHTID-------------ATQPLEAVMDAIRTTVTHWV 208 (213)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHTC-TTEEEEE-------------TTSCHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHC-CcEEEEC-------------CCCCHHHHHHHHHHHHHHHH
Confidence 22222333 333444332211 1235666 46899999999999998765
No 93
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.04 E-value=6e-09 Score=88.10 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=45.9
Q ss_pred CcEEEEEc-CHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHH
Q 023749 187 GISLWIDV-PPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWL 263 (278)
Q Consensus 187 ~~vV~L~a-~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~ 263 (278)
..+||+.. |++++.+| ..|++.. +.....+...+.+ ...+..+|++|+| + +++++.+++.++
T Consensus 119 ~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~-~~~~~~~d~vi~n-------------~-~~~~~~~~l~~~ 183 (205)
T 3tr0_A 119 ALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREE-MAHYKEFDYLVVN-------------D-NFDQAVQNLIHI 183 (205)
T ss_dssp CEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHH-HTTGGGCSEEEEC-------------S-SHHHHHHHHHHH
T ss_pred cEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HhcccCCCEEEEC-------------C-CHHHHHHHHHHH
Confidence 35677776 58999999 6665543 3445566665444 2344579999984 2 899999999999
Q ss_pred hhhc
Q 023749 264 YNAS 267 (278)
Q Consensus 264 i~~~ 267 (278)
+.++
T Consensus 184 i~~~ 187 (205)
T 3tr0_A 184 ISAE 187 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9754
No 94
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.02 E-value=1.3e-09 Score=104.02 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=75.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g 171 (278)
.+..|+|+|+|||||||+|+.|++.+|+.+++.|.+ + . |+.+...+...+.....+|+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~--~------------~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G--S------------WQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C--S------------HHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H--H------------HHHHHHHHHHHHhcCCcEEEeCC
Confidence 567999999999999999999999999999999886 1 1 12222233334444555666543
Q ss_pred Cceeec-hhHHHhhh-CC---cEEEEEcCHHHHHhh-hcCCC---CC-CChHHHHHHHHHHhhhccc--cCcEEEec
Q 023749 172 NGAVQS-SANLALLR-HG---ISLWIDVPPGMVARM-DHSGF---PE-SEVLPQLFALYKEMRDGYA--TADVTVSL 236 (278)
Q Consensus 172 ~g~v~~-~~~~~~L~-~~---~vV~L~a~~e~l~~R-~~r~r---p~-~~~~~~l~~~~~er~~~Y~--~AD~vId~ 236 (278)
...... ...++.++ .+ .+|||++|.+++.+| ..|.+ .. ....+.+..++..+++.-. .-|.++..
T Consensus 318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v 394 (416)
T 3zvl_A 318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEI 394 (416)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEEEEE
Confidence 221111 11122232 22 689999999999999 33321 11 1123445555555444322 35666653
No 95
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.01 E-value=2.1e-09 Score=93.90 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=36.6
Q ss_pred CCcEEEEEcCHHHHHhh-hcCCCCCC-----ChHHHHHHHHHHhhhcc--c-cCc-EEEecCcccccccccCCCCCCHHH
Q 023749 186 HGISLWIDVPPGMVARM-DHSGFPES-----EVLPQLFALYKEMRDGY--A-TAD-VTVSLQKVASQLGYDDLDAVTTED 255 (278)
Q Consensus 186 ~~~vV~L~a~~e~l~~R-~~r~rp~~-----~~~~~l~~~~~er~~~Y--~-~AD-~vId~~~va~~~~~~Dts~~tpee 255 (278)
.+++|||++|++++.+| ..|+|+.+ +..+.++..|.++...| . .++ ++||. +.++|+
T Consensus 147 pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-------------~~~~ee 213 (230)
T 2vp4_A 147 ADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-------------DLNLEN 213 (230)
T ss_dssp CSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-------------CC----
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-------------CCCHHH
Confidence 67899999999999999 65666522 23456777787765444 2 344 67873 579999
Q ss_pred HHHHHHHHhhhcC
Q 023749 256 MTLEVKWLYNASI 268 (278)
Q Consensus 256 va~~I~~~i~~~~ 268 (278)
+.++|.+.+...+
T Consensus 214 v~~~I~~~l~~~~ 226 (230)
T 2vp4_A 214 IGTEYQRSESSIF 226 (230)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887544
No 96
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.99 E-value=2.1e-10 Score=102.16 Aligned_cols=108 Identities=9% Similarity=0.003 Sum_probs=64.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH--H-hCC-CC--------------hHHHHH-hhchhHhHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE--A-AGG-ES--------------AAKAFR-ESDEKGYQQAET 154 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~--~-~g~-~~--------------i~ei~~-~~ge~~fr~~e~ 154 (278)
+.|+|+|++||||||+|+.||+.+|+++++.|.+... . .+. .. ..+... ..+...|++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4789999999999999999999999999999987421 1 000 00 000111 234455666555
Q ss_pred HHHHHHHcCCCEEEEeCCceeechhHHHh--hhCC---cEEEEEcCH-HHHHhh
Q 023749 155 EVLKQLSSMGRLVVCAGNGAVQSSANLAL--LRHG---ISLWIDVPP-GMVARM 202 (278)
Q Consensus 155 ~vl~~l~~~~~~VI~~g~g~v~~~~~~~~--L~~~---~vV~L~a~~-e~l~~R 202 (278)
..+ ++...+..+|.+|+........... +..+ .+|||++|. +++.+|
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~R 134 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTR 134 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHH
Confidence 555 5544444455444322111111111 0012 689999997 999998
No 97
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.99 E-value=2.5e-09 Score=93.77 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCce--ec---CchHHHHHhCCCChHHHHHhhc-------hh-HhHHHHHH---
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY--FD---SDSLVFEAAGGESAAKAFRESD-------EK-GYQQAETE--- 155 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD---~D~li~~~~g~~~i~ei~~~~g-------e~-~fr~~e~~--- 155 (278)
+|+.|+|.|++||||||+++.|++.|+... +. .+.-+ | ..+.+++.... +. .|.....+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~----g-~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRI----G-GLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHH----H-HHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChH----H-HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999998632 11 01111 0 01112221100 00 11111111
Q ss_pred HHHHHHcCCCEEEEeCCc---ee------ech---hHHHhh-----hCCcEEEE-EcCHHHHHhh-hcC-CCCCC-ChHH
Q 023749 156 VLKQLSSMGRLVVCAGNG---AV------QSS---ANLALL-----RHGISLWI-DVPPGMVARM-DHS-GFPES-EVLP 214 (278)
Q Consensus 156 vl~~l~~~~~~VI~~g~g---~v------~~~---~~~~~L-----~~~~vV~L-~a~~e~l~~R-~~r-~rp~~-~~~~ 214 (278)
.+......+.+||+...- .+ .+. .....+ +++++||| ++|+++..+| .++ .|.+. +..+
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~ 158 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQE 158 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHH
Confidence 122222346677765310 00 000 111111 26899999 9999999999 433 23221 1223
Q ss_pred HHHHHHHHhhhc---cc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749 215 QLFALYKEMRDG---YA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS 269 (278)
Q Consensus 215 ~l~~~~~er~~~---Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~ 269 (278)
.+++.|.+.... |. ..-.+|| +.+.++|+|.++|.+.+.+.++
T Consensus 159 rvr~~Y~~la~~~~~~~~~~~~vID------------~a~~s~eeV~~~I~~~i~~~l~ 205 (216)
T 3tmk_A 159 KVKQTFMKLLDKEIRKGDESITIVD------------VTNKGIQEVEALIWQIVEPVLS 205 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEE------------CTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHh
Confidence 334444444332 11 1224555 5679999999999999987764
No 98
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.98 E-value=7.5e-09 Score=93.97 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=64.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHHhCCCChHHHHHhhc-------hhHhHHHHHHHHHHHH-
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESD-------EKGYQQAETEVLKQLS- 161 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~~g~~~i~ei~~~~g-------e~~fr~~e~~vl~~l~- 161 (278)
.++.|+|+|+|||||||+++.|++.+ ++.+++.|.+.....+ ..++....+ ..++..+....+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~ 108 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD 108 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 47789999999999999999999999 8899999887543221 111111111 1233443334444444
Q ss_pred cCCCEEEEeCCceee-chhHHHhhh-CC---cEEEEEcCHHHH----Hhh
Q 023749 162 SMGRLVVCAGNGAVQ-SSANLALLR-HG---ISLWIDVPPGMV----ARM 202 (278)
Q Consensus 162 ~~~~~VI~~g~g~v~-~~~~~~~L~-~~---~vV~L~a~~e~l----~~R 202 (278)
...++|++....... ....++.++ .+ .++++.+|++++ .+|
T Consensus 109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~R 158 (287)
T 1gvn_B 109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER 158 (287)
T ss_dssp HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHH
Confidence 345555543221111 112223343 33 368999999999 777
No 99
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.92 E-value=2.5e-08 Score=87.33 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCce
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYY 121 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~ 121 (278)
+|+.|+|.|++||||||+++.|++.+ ++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 47889999999999999999999999 5544
No 100
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.91 E-value=1.1e-09 Score=105.86 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch-----HHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHH-----
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS-----LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS----- 161 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~-----li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~----- 161 (278)
++.+|+|+|+|||||||+|+.|++.+++.++++|. +.++..|.....++|...|++.++..+..++..+.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999887777665 55666652133467777787666655544332221
Q ss_pred ---cCCCEEEEeCCceeechhHHH----hhh-CC-cEEEEE---cCHHHHHhh
Q 023749 162 ---SMGRLVVCAGNGAVQSSANLA----LLR-HG-ISLWID---VPPGMVARM 202 (278)
Q Consensus 162 ---~~~~~VI~~g~g~v~~~~~~~----~L~-~~-~vV~L~---a~~e~l~~R 202 (278)
..+..+|..... .....++ .++ .+ .++||+ .+++.+.+|
T Consensus 118 l~~~~G~~vV~D~tn--~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r 168 (469)
T 1bif_A 118 LSEEGGHVAVFDATN--TTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN 168 (469)
T ss_dssp HHTTCCSEEEEESCC--CSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred HHhCCCCEEEEeCCC--CCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHH
Confidence 122223322211 1122222 233 34 578888 567888777
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.91 E-value=1.2e-08 Score=87.02 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCchHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF 129 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~li~ 129 (278)
+|..|.|+|++||||||+++.|+..++ +.+++.|..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 577899999999999999999999988 88998887653
No 102
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.89 E-value=7.3e-09 Score=101.55 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC-------ceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-------~~iD~D~ 126 (278)
.+.+|+|+|++||||||+|+.||++|+. .++|.|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5689999999999999999999999997 6889887
No 103
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=3.6e-09 Score=91.07 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=38.9
Q ss_pred CcEEEEEcC-HHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHH
Q 023749 187 GISLWIDVP-PGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWL 263 (278)
Q Consensus 187 ~~vV~L~a~-~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~ 263 (278)
..+||+..| .+++.+| ..|+... ++....+.....+. ..+..+|++|.| -+.++++++|.++
T Consensus 121 ~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~-~~~~~~d~vivN--------------~~~~~~~~~l~~~ 185 (208)
T 3tau_A 121 GIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI-EMMASYDYAVVN--------------DVVANAVQKIKGI 185 (208)
T ss_dssp SEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH-HHGGGSSEEEEC--------------SSHHHHHHHHHHH
T ss_pred eEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhhccCCEEEEC--------------cCHHHHHHHHHHH
Confidence 467888866 8888888 6665432 22334444443332 223468998874 2599999999998
Q ss_pred hhhc
Q 023749 264 YNAS 267 (278)
Q Consensus 264 i~~~ 267 (278)
+.+.
T Consensus 186 i~~~ 189 (208)
T 3tau_A 186 VETE 189 (208)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 104
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.82 E-value=1.6e-08 Score=85.42 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..|+|+|++||||||+++.|++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999999999865
No 105
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.78 E-value=1.8e-08 Score=88.64 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=26.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+|..|.|+|++||||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 57789999999999999999999988876
No 106
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.77 E-value=6.7e-09 Score=94.55 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~ 129 (278)
++..|.|+|++||||||+++.|++.+| ++++|+|++..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 356899999999999999999999888 78999999763
No 107
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.75 E-value=1.2e-08 Score=95.30 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--HHHH------------hCCC-----ChHHHHHhhchhHhHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGGE-----SAAKAFRESDEKGYQQAET 154 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--i~~~------------~g~~-----~i~ei~~~~ge~~fr~~e~ 154 (278)
+.|+|+|++||||||+|+.||+.++..+++.|.+ .... .+ . ++.+.....+...|.....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~-v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEG-IPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTT-CCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHH-HHHHHHHHhCCccccCHHHHHHHHH
Confidence 5899999999999999999999999999999987 2211 11 1 0111112234455766666
Q ss_pred HHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEE-cCHH
Q 023749 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID-VPPG 197 (278)
Q Consensus 155 ~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~-a~~e 197 (278)
..+..+...+..+|.+||..+.. +.+..++.+|.+ ++++
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~----~~l~~~l~~~~~~~d~~ 126 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYI----QSLLYNYAFEDESISED 126 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHH----HHHHBCSCCC---CCHH
T ss_pred HHHHHHHhCCCcEEEECChhhhH----HHHHhcccccCCCCChH
Confidence 66667665666777777654332 223344557888 8888
No 108
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.74 E-value=4.6e-09 Score=97.42 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=60.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC--------------------hHHHHHhhchhHhHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQA 152 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~--------------------i~ei~~~~ge~~fr~~ 152 (278)
++.|+|+|++||||||+|+.||+++|+.+++.|.+.... | ++ +.+.+..++...|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~ 82 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD 82 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHH
Confidence 458999999999999999999999999999999864211 1 11 1223344566778888
Q ss_pred HHHHHHHHHcCCCEEEEeCCce
Q 023749 153 ETEVLKQLSSMGRLVVCAGNGA 174 (278)
Q Consensus 153 e~~vl~~l~~~~~~VI~~g~g~ 174 (278)
+..++.++...+..+|.+||+.
T Consensus 83 a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 83 ALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHHcCCeEEEECCch
Confidence 8888888887777788887653
No 109
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.68 E-value=2.8e-08 Score=85.17 Aligned_cols=36 Identities=28% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~l 127 (278)
+|..|.|+|++||||||+++.|+..+. ..++..|..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 578999999999999999999999874 445665553
No 110
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.63 E-value=2.8e-08 Score=83.75 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=27.6
Q ss_pred CCcEEEEEcCH-HHHHhh-hcCCCCCC-ChHHHHHHHHHHhhhcc-ccCcEEEecCcccccccccCCCCCCHHHHHHHHH
Q 023749 186 HGISLWIDVPP-GMVARM-DHSGFPES-EVLPQLFALYKEMRDGY-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVK 261 (278)
Q Consensus 186 ~~~vV~L~a~~-e~l~~R-~~r~rp~~-~~~~~l~~~~~er~~~Y-~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~ 261 (278)
...+||+.+|. +++.+| ..|++..+ .....+.....+....+ ..+|.+|.| + +.+++..++.
T Consensus 114 ~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~n-------------d-~~~~a~~~l~ 179 (186)
T 3a00_A 114 NARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVN-------------D-DLDKAYKELK 179 (186)
T ss_dssp CCEEEEEECSCC---------------------------------CCCCSEEEEC-------------S-SHHHHHHHHH
T ss_pred CeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCcEEEEC-------------c-CHHHHHHHHH
Confidence 35689999966 889999 66665432 22233444333322222 357888874 2 7899999999
Q ss_pred HHhhh
Q 023749 262 WLYNA 266 (278)
Q Consensus 262 ~~i~~ 266 (278)
+++.+
T Consensus 180 ~~i~~ 184 (186)
T 3a00_A 180 DFIFA 184 (186)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 88864
No 111
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.61 E-value=4.2e-08 Score=82.31 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=25.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
++|+.|+|+|++||||||+++.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 678999999999999999999999865
No 112
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.58 E-value=6.5e-09 Score=97.61 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCce--------------------ecCchHHHHHhCCCChHHHHHhhchhHhHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--------------------iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e 153 (278)
..|+|+|++||||||+++.||+.++++| +|+|..+++..| +++.++|...|+ .|+..|
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E 102 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE 102 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence 3599999999999999999999999999 999999988887 889999999998 999887
Q ss_pred HHH
Q 023749 154 TEV 156 (278)
Q Consensus 154 ~~v 156 (278)
...
T Consensus 103 ~~~ 105 (359)
T 2ga8_A 103 DVN 105 (359)
T ss_dssp CTT
T ss_pred hhh
Confidence 643
No 113
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.58 E-value=5.2e-08 Score=83.18 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~li 128 (278)
.+..|.|+|++||||||+++.|+..+ |.. +++.|.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 46789999999999999999999876 544 34556543
No 114
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.54 E-value=9.1e-09 Score=87.53 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+.|+|+|++||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999853
No 115
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.53 E-value=1e-07 Score=84.92 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=31.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~ 129 (278)
+.|.|+|++||||||+++.|++.+|++++.....+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~ 37 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIK 37 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHH
Confidence 479999999999999999999989999988766543
No 116
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.42 E-value=3.9e-06 Score=72.80 Aligned_cols=151 Identities=7% Similarity=0.021 Sum_probs=79.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHHHH-Hh---CCCChHHHHH-hhchhHhHH--------HHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFE-AA---GGESAAKAFR-ESDEKGYQQ--------AETE 155 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li~~-~~---g~~~i~ei~~-~~ge~~fr~--------~e~~ 155 (278)
..++|+|+|++||||+|+|+.|.+.+| ++.+...+.+++ .. | ....+.+. ..-.+.+|. +...
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~g-l~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHG-LNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTT-CCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcC-CCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 345788999999999999999988885 677888776664 21 2 22222210 000011111 1000
Q ss_pred ---HHHHHH-c--CCCEEEEeCCceeechhHHHhhh-C--C--cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh
Q 023749 156 ---VLKQLS-S--MGRLVVCAGNGAVQSSANLALLR-H--G--ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM 223 (278)
Q Consensus 156 ---vl~~l~-~--~~~~VI~~g~g~v~~~~~~~~L~-~--~--~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er 223 (278)
+...++ . ....+|.+| +-.....++++ . . .+|.+.++++++.+| -.+....++. ..+ + .-
T Consensus 89 d~~~~~~~~~~~~~~~~vII~d---vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~--esE--~-gL 160 (202)
T 3ch4_B 89 DPGFFCRKIVEGISQPIWLVSD---TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDA--ESE--C-GL 160 (202)
T ss_dssp CTTTTHHHHSBTCCCSEEEECC---CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTS--HHH--H-TT
T ss_pred CchHHHHHHHHhcCCCcEEEeC---CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcccccccc--ccc--c-CC
Confidence 001111 1 122344333 22344455554 1 2 469999999999999 2222211111 111 1 11
Q ss_pred hhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749 224 RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN 265 (278)
Q Consensus 224 ~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~ 265 (278)
... ..+|++|.| +.|.+++..++.+++.
T Consensus 161 ~~~-~~~D~vI~N-------------dgt~eel~~~v~~ll~ 188 (202)
T 3ch4_B 161 DNF-GDFDWVIEN-------------HGVEQRLEEQLENLIE 188 (202)
T ss_dssp TTC-CCCSEEEEE-------------CSCHHHHHHHHHHHHH
T ss_pred CCC-CcCCEEEEe-------------CCCHHHHHHHHHHHHH
Confidence 222 469999986 3488877777655543
No 117
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.42 E-value=6.3e-07 Score=77.72 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=36.7
Q ss_pred cEEEEEc-CHHHHHhh-hcCCCC-CCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749 188 ISLWIDV-PPGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY 264 (278)
Q Consensus 188 ~vV~L~a-~~e~l~~R-~~r~rp-~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i 264 (278)
..||+.. +.+++.+| ..|+.. .++....+..++.+.. .+..+|++|+| + +++++.+++.+++
T Consensus 142 ~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~-~~~~~d~vI~n------------~--~~e~~~~~l~~~i 206 (231)
T 3lnc_A 142 VSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEIS-HCEAYDYVIVN------------E--DIEETADRISNIL 206 (231)
T ss_dssp EEEEEECSCHHHHHHC--------------CHHHHHHHHT-TGGGSSEEEEC------------S--SHHHHHHHHHHHH
T ss_pred EEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-hhcCCeEEEEC------------c--CHHHHHHHHHHHH
Confidence 4676655 78888888 555432 2333445555554432 23469999984 2 6999999999888
Q ss_pred hh
Q 023749 265 NA 266 (278)
Q Consensus 265 ~~ 266 (278)
..
T Consensus 207 ~~ 208 (231)
T 3lnc_A 207 RA 208 (231)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.41 E-value=6.2e-07 Score=81.83 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=30.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~l 127 (278)
-.|..|.|+|++||||||+++.|+..++ +.++++|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3577999999999999999999999876 556666654
No 119
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.32 E-value=1.1e-06 Score=75.22 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+.|+|+||+||||||+.+.|.+.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998875
No 120
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.27 E-value=1.8e-06 Score=79.82 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchH
Q 023749 78 FAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (278)
Q Consensus 78 ~~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~l 127 (278)
..++.....|.+.- .+..|.|+|++||||||+++.|+..++ ..+++.|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34455555555543 233899999999999999999998875 334666664
No 121
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.13 E-value=8.5e-07 Score=87.26 Aligned_cols=77 Identities=23% Similarity=0.163 Sum_probs=58.5
Q ss_pred cccCCCcceecccccCCcccccccccc-----------CCcc----HHHHHHHHhhh------hccCCcEEEEEccCCCc
Q 023749 47 IISRKPRITTRSIADDTTSNTVTKVAA-----------EDPS----FAVKKKAADIS------TELKGTSVFLVGMNNAI 105 (278)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~~GSG 105 (278)
...++++.+.++|.+|.+.+||+.... +|++ ..++++..+.. ..+.|..++|+|+||+|
T Consensus 41 ~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtG 120 (543)
T 3m6a_A 41 PSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVG 120 (543)
T ss_dssp SSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSS
T ss_pred CCCCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCC
Confidence 346779999999999999999976552 1221 34555543332 45578999999999999
Q ss_pred HHHHHHHHHHHhCCceec
Q 023749 106 KTHLGKFLADALRYYYFD 123 (278)
Q Consensus 106 KSTlAk~LAe~Lg~~~iD 123 (278)
|||+++.++..++.+++.
T Consensus 121 KTtlar~ia~~l~~~~~~ 138 (543)
T 3m6a_A 121 KTSLAKSIAKSLGRKFVR 138 (543)
T ss_dssp HHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHhcCCCeEE
Confidence 999999999999877653
No 122
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.10 E-value=4.4e-06 Score=77.19 Aligned_cols=81 Identities=22% Similarity=0.214 Sum_probs=52.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--HHH------------HhCC----CChHHHHHhhchhHhHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFE------------AAGG----ESAAKAFRESDEKGYQQAE 153 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--i~~------------~~g~----~~i~ei~~~~ge~~fr~~e 153 (278)
+++.|+|+||+||||||++..||+.++..+++.|.. ... ..|- .++.+.-..+....|.+.-
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 467899999999999999999999999999999875 211 1110 0001111122233455555
Q ss_pred HHHHHHHHcCCCEEEEeCC
Q 023749 154 TEVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 154 ~~vl~~l~~~~~~VI~~g~ 172 (278)
...+.++...+...|.+||
T Consensus 82 ~~~i~~i~~~gk~pIlVGG 100 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGG 100 (322)
T ss_dssp HHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHhCCCcEEEEcC
Confidence 5667777766666666775
No 123
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.10 E-value=2.5e-06 Score=78.42 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=24.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.|..|.|+|++||||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 357899999999999999999999876
No 124
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.00 E-value=8.6e-06 Score=70.25 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.8
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.|-.+.++|+.|+|+|++||||||+.+.|.+.+.
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445667899999999999999999999998764
No 125
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.94 E-value=2.9e-05 Score=72.17 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=26.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
.+++.|+|.|+.||||||+++.|++.|+.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45789999999999999999999999865
No 126
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.92 E-value=1.1e-05 Score=74.38 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=33.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
-.++.|+|+||+||||||++..||+.++..+++.|..
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 3467899999999999999999999999999998874
No 127
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.86 E-value=2.2e-05 Score=66.72 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|+.++|+|++||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999998765
No 128
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.83 E-value=1.8e-05 Score=75.33 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=52.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--HHHH------------hCC----CChHHHHHhhchhHhHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGG----ESAAKAFRESDEKGYQQAET 154 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--i~~~------------~g~----~~i~ei~~~~ge~~fr~~e~ 154 (278)
.+.|+|+||+||||||++..||+.++..+++.|.. ...+ .|- .+..+.-..+....|.+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 45789999999999999999999999999998873 2111 110 00111111223345666656
Q ss_pred HHHHHHHcCCCEEEEeCC
Q 023749 155 EVLKQLSSMGRLVVCAGN 172 (278)
Q Consensus 155 ~vl~~l~~~~~~VI~~g~ 172 (278)
..+.++...+...|.+||
T Consensus 82 ~~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp HHHHHHHTTTCEEEEECS
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 677777776666666765
No 129
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.83 E-value=0.00037 Score=60.53 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
-.|..++|+|++||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999999998764
No 130
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.78 E-value=1.9e-05 Score=69.10 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
++.|+|+|+||+||||+++.++..++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999999877643
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.66 E-value=6.8e-05 Score=68.26 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.+..|+|.|+||+|||++|+.+|+.++.+++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 356899999999999999999999999988754
No 132
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.63 E-value=0.00021 Score=66.57 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=27.4
Q ss_pred ccCCcEEEEEccCCCcHHHHH-HHHHHHhCCc
Q 023749 90 ELKGTSVFLVGMNNAIKTHLG-KFLADALRYY 120 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlA-k~LAe~Lg~~ 120 (278)
..+++.|+|.|+.||||||++ +.|++.++..
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 467889999999999999999 9999988643
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=8.2e-05 Score=61.54 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=33.7
Q ss_pred cHHHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 77 SFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 77 ~~~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.....+.+.++...+ .|..++|+|++|+||||+++.++..+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356667777777554 47899999999999999999999876
No 134
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.59 E-value=4e-05 Score=69.21 Aligned_cols=33 Identities=6% Similarity=-0.114 Sum_probs=28.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
+..++|.|+||+|||++|+.+|+.+|.+++..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 457888899999999999999999999887543
No 135
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.59 E-value=0.00014 Score=60.25 Aligned_cols=35 Identities=20% Similarity=0.058 Sum_probs=28.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li 128 (278)
+|..+.|+|++||||||+++.+. .|...++.|.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~ 42 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR 42 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence 58899999999999999999864 356666666554
No 136
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.59 E-value=0.00012 Score=66.18 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=34.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc--hHHHHHhC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG 133 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D--~li~~~~g 133 (278)
-.+..|+|+|+||+|||++|+.+|..++.+++..+ ++.....|
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 91 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence 35778999999999999999999999998876543 44444444
No 137
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=7.5e-05 Score=71.58 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=30.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++-|+|.||||+|||++|+.+|..+|++|+..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 467799999999999999999999999998764
No 138
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=7.8e-05 Score=71.63 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++-|+|.||||+|||++|+.+|..+|++|+..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 468899999999999999999999999998754
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00011 Score=70.63 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++-|+|.||||+|||.+|+++|..+|++|+..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 478899999999999999999999999998754
No 140
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.54 E-value=0.00014 Score=64.76 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.+..|+|.|+||+||||+++.++..++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 46799999999999999999999999988754
No 141
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.52 E-value=0.00015 Score=64.03 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=29.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
-.+..|+|.|+||+|||++++.+|+.++.+++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 357789999999999999999999999988764
No 142
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.51 E-value=5.2e-05 Score=72.98 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=32.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~ 126 (278)
+.+..|+|+|+||+||||+|+.||+.++++++..|.
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 567889999999999999999999999999987653
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00013 Score=69.53 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++-|+|.||||+|||.+|+++|..+|++|+..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 467899999999999999999999999998764
No 144
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.50 E-value=0.00095 Score=62.89 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=23.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+++.|+|.|+.||||||+++.|++.|+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4677899999999999999999999875
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.46 E-value=0.00017 Score=58.46 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.++..+....-.+..++|+|++|+|||++++.+++.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3334444433456789999999999999999999987
No 146
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.46 E-value=6.9e-05 Score=69.21 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
.+..|+|.|+||+|||++|+.||+.++.+++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 5678999999999999999999999999988654
No 147
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=8.3e-05 Score=64.60 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=28.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.+..|+|.|+||+|||++++.+++.++.+++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999999988764
No 148
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00013 Score=70.05 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++-|+|.||||+|||.+|+.+|..++++|+..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 468899999999999999999999999998754
No 149
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.44 E-value=0.00014 Score=59.04 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=28.0
Q ss_pred HHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 83 ~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..+....-.+..|+|+|++|+|||++++.+++.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444443457789999999999999999999987
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00012 Score=70.90 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=30.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.++-|+|.||||+|||++|+.+|..+|++|+..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 578899999999999999999999999998754
No 151
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.38 E-value=0.00018 Score=68.86 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=30.9
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhC--CceecC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS 124 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~ 124 (278)
+...+..|+|.|+||+|||++|+.+|+.+| ++++..
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 444668899999999999999999999999 777654
No 152
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.33 E-value=7.4e-05 Score=65.54 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=28.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
+..|+|+|+||+|||++|+.+++.++.+++..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 45689999999999999999999999887654
No 153
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.30 E-value=0.00013 Score=67.56 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
.+..|+|+|+||+|||++|+.||+.++.+++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 4668999999999999999999999998887644
No 154
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.28 E-value=0.00015 Score=64.23 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=29.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
-.+..++|.|+||+|||++++.+++.++.+++.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 357789999999999999999999999987653
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.27 E-value=0.00042 Score=63.31 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCcee
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF 122 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~i 122 (278)
.++.|+|.|+||+|||++|+.+|..+ +.+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 34789999999999999999999999 77664
No 156
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.25 E-value=0.00035 Score=59.15 Aligned_cols=41 Identities=12% Similarity=0.017 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..+.+....+...-.+..++|+|++|+||||+++.+++.++
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444455555444688999999999999999999998875
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.25 E-value=0.00019 Score=64.02 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+..|+|+|+||+|||++|+.+++.++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 455799999999999999999999883
No 158
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.24 E-value=0.00018 Score=63.50 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.+..++|+|++|+|||++|+.+++.++.+++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 456899999999999999999999999987653
No 159
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.22 E-value=0.00014 Score=62.97 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=31.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l 127 (278)
..|+.|+|+|++|+||||+|..|+++.+ .+++.|..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 4678899999999999999999998765 88887764
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.21 E-value=0.00039 Score=64.38 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
+..|+|.|+||+|||++|+.+|..++.+++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 46799999999999999999999999988754
No 161
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.20 E-value=0.00038 Score=57.71 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
...+++..++...-....++|+|++|+|||++++.+++.+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555555554455569999999999999999999986
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.19 E-value=0.00043 Score=64.04 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=29.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.+..|+|+|++|+|||++|+.+|+.++.+++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 46789999999999999999999999988764
No 163
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.18 E-value=0.00074 Score=62.97 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.+..|+|.|++|+|||++|+.+|..++.+++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 36799999999999999999999999988764
No 164
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.17 E-value=0.00032 Score=56.30 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCcee
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i 122 (278)
.+..|+|.|++|+|||++|+.+++.. +.+++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v 56 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV 56 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence 56789999999999999999999865 45554
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.00027 Score=57.61 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..++|+|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999877
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.16 E-value=0.00029 Score=68.30 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
++.|+|+|+||+|||++++.++..++.+|+..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 56799999999999999999999999998754
No 167
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.13 E-value=0.00062 Score=57.02 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhcc----CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 79 AVKKKAADISTEL----KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 79 ~~~~~~~~~~~~~----~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+.+.+..+.... .+..|+|.|++|+|||++++.++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3555666666544 22789999999999999999999877
No 168
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.12 E-value=0.00029 Score=63.07 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
++-++|+|+||+||||+++.||..++..++.
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 4459999999999999999999999876654
No 169
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.10 E-value=0.00029 Score=59.19 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=24.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYY 121 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~ 121 (278)
+++.|+|++||||||+.+.|+..+++.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 4789999999999999999999887543
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.08 E-value=0.00035 Score=60.87 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=27.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
++.++|+|++|+||||+++.++..++..++..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 34599999999999999999999988776554
No 171
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.08 E-value=0.00079 Score=69.22 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
.++-|+|.||||+|||++|+.+|..+|.+++..+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 4678999999999999999999999999987643
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.08 E-value=0.00073 Score=61.14 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=29.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
....|+|.|++|+|||++|+.+++.++.+++..+
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 4467999999999999999999999998876543
No 173
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.08 E-value=0.00067 Score=61.27 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=35.2
Q ss_pred HHHHHHhhhhcc--CCcEEEEEccCCCcHHHHHHHHHHHh---CCce--ecCchHH
Q 023749 80 VKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV 128 (278)
Q Consensus 80 ~~~~~~~~~~~~--~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~--iD~D~li 128 (278)
....+..+.... .+..++|.|++|+||||+++.++..+ +.++ ++...+.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 344455555433 45789999999999999999999988 6665 4444443
No 174
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.04 E-value=0.00066 Score=65.28 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceecCc
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD 125 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L----------g~~~iD~D 125 (278)
....++..+++.......++|+|+||+|||++++.|++.+ +.+++..|
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3344445666655667789999999999999999999997 66666554
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.0007 Score=65.77 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
...++|+|++|+||||+|+.+++.+|++++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 47899999999999999999999999988653
No 176
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.01 E-value=0.00043 Score=63.40 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=26.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~ 121 (278)
...++|+|++|+||||+++.++..++.++
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 36799999999999999999999998764
No 177
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.01 E-value=0.00034 Score=63.40 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=30.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC-------Ccee-cCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYF-DSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~i-D~D~li 128 (278)
.+..|.|+|++||||||+++.|++.++ ...+ ..|.++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 567899999999999999999999875 2344 777754
No 178
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.00 E-value=0.00044 Score=58.69 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+|..+.|+|++||||||+.+.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999998763
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.98 E-value=0.00028 Score=56.59 Aligned_cols=42 Identities=10% Similarity=0.259 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.+++.+..++. .+..|+|.|++|+|||++|+.++...+ +++.
T Consensus 15 ~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~ 56 (143)
T 3co5_A 15 EMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-PWVS 56 (143)
T ss_dssp HHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred HHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence 44444444443 456799999999999999999998776 5543
No 180
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.97 E-value=0.00043 Score=59.59 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..++|+|++||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999999865
No 181
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.97 E-value=0.0011 Score=63.14 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-CCcee--cCchHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF--DSDSLVFE 130 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~i--D~D~li~~ 130 (278)
.+..|+|.|+||+|||++|+.+|..+ +.+++ +..++...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 45789999999999999999999999 77764 44444433
No 182
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.91 E-value=0.0006 Score=60.41 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
+.|+|+|++|+||||+++.++..++..++..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 4599999999999999999999988776654
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.88 E-value=0.0011 Score=60.56 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=28.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh-----------CCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-----------g~~~iD~D 125 (278)
.+..++|.|++|+||||+++.+++.+ +++++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 46689999999999999999999987 77766543
No 184
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.86 E-value=0.001 Score=67.40 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceecCch
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS 126 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L----------g~~~iD~D~ 126 (278)
....++..+++..-....++|+|+||+|||++++.||+.+ +..++..|-
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 4445556666655677789999999999999999999997 777776654
No 185
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.81 E-value=0.00059 Score=61.74 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
+..++|.|+||+|||++++.+++.++.+++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 679999999999999999999999998764
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.80 E-value=0.00085 Score=61.24 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=27.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+...+..++|.|+||+|||++|+.+++.++.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3345679999999999999999999999984
No 187
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.79 E-value=0.0012 Score=57.48 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=32.0
Q ss_pred HHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 81 KKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 81 ~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
......+...+. ...|+|.||||+||||+|..|++.++-..+.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 344455555443 3479999999999999999999998755443
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.78 E-value=0.00099 Score=62.68 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=28.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.|..|+|+|++||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 57899999999999999999999988877665
No 189
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.77 E-value=0.00067 Score=60.73 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=27.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i 122 (278)
.+..++|+|++|+|||++|+.+++.++.+++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999998864
No 190
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.73 E-value=0.00086 Score=57.47 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.8
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHH
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
--+|..+.|+|++||||||+++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3479999999999999999999988
No 191
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.73 E-value=0.0011 Score=64.55 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=27.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
++-|+|+|+||+||||+++.++..++.+++..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45699999999999999999999998777643
No 192
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.73 E-value=0.00098 Score=54.99 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=24.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.|..+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999999999876
No 193
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.69 E-value=0.0026 Score=56.36 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..+++....+...-....++|.|++|+|||++++.+++.+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4455555555433333459999999999999999999986
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.69 E-value=0.0022 Score=58.44 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhC
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+++|.|++|+||||+++.+++.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999999999863
No 195
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.67 E-value=0.0009 Score=60.80 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..++|+|++|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999988
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.67 E-value=0.003 Score=52.61 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+..++|.|++|+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999999999999999999998864
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.64 E-value=0.00098 Score=56.36 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.|..+.|+|++||||||+++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998743
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.63 E-value=0.0015 Score=59.13 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh------CCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL------RYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L------g~~~iD~ 124 (278)
.+..++|+|++|+||||+++.+++.+ ++.++..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 46789999999999999999999988 7666543
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.62 E-value=0.0022 Score=58.44 Aligned_cols=28 Identities=18% Similarity=0.053 Sum_probs=24.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh----CCcee
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL----RYYYF 122 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L----g~~~i 122 (278)
.++|+|++|+||||+++.+++.+ ++.++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~ 77 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFV 77 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEE
Confidence 89999999999999999999988 55554
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.62 E-value=0.0024 Score=60.91 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHh-----CCce--ecCchH
Q 023749 79 AVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADAL-----RYYY--FDSDSL 127 (278)
Q Consensus 79 ~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~--iD~D~l 127 (278)
..+..+..++..-. +..++|.|++|+||||+++.++..+ +.++ ++...+
T Consensus 115 ~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 115 FAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp HHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 34555666664433 6789999999999999999999987 5554 454444
No 201
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.61 E-value=0.0014 Score=55.70 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=31.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li 128 (278)
..|.-|+|+|++|+||||+|..|.+ .|+.++.-|.+.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~ 50 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID-RGHQLVCDDVID 50 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEE
Confidence 4688999999999999999999987 599988766654
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.60 E-value=0.0012 Score=64.02 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=30.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
-.+..|+|.|+||+|||++|+.++..++.+|+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3567899999999999999999999999888754
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.59 E-value=0.0015 Score=55.09 Aligned_cols=28 Identities=18% Similarity=0.037 Sum_probs=24.2
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
--.|..++|+|++||||||+++.++..+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999998543
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.57 E-value=0.0013 Score=63.10 Aligned_cols=32 Identities=22% Similarity=0.076 Sum_probs=28.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
..++|.|+||+||||+|+.+++.++.+++..+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 67999999999999999999999998876543
No 205
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.56 E-value=0.0023 Score=58.12 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC----Cce--ecCchHHHHH
Q 023749 79 AVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR----YYY--FDSDSLVFEA 131 (278)
Q Consensus 79 ~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~Lg----~~~--iD~D~li~~~ 131 (278)
.+...+.++.... .+..++|.|++|+|||++++.++..+. .++ +....++.+.
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 4555666777654 368999999999999999999998654 433 4544444433
No 206
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.56 E-value=0.0013 Score=55.70 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
|.+|.|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5689999999999999999999876
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.53 E-value=0.0021 Score=56.26 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+..|+|+|++|+|||++|+.+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 467899999999999999999998764
No 208
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0018 Score=59.63 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=25.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.+.+|+|.|+||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999999998
No 209
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.52 E-value=0.0013 Score=58.46 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..++|+|++|+|||++|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 210
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.52 E-value=0.0029 Score=65.08 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
.++.|+|.||||+|||.+|+.+|..++.+|+..+
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 3567999999999999999999999999998653
No 211
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.51 E-value=0.0012 Score=57.73 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 689999999999999999999974
No 212
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.51 E-value=0.0017 Score=59.49 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=24.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.++.|+|++||||||+.+.|+.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999999866
No 213
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.46 E-value=0.0014 Score=56.92 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|..+.|+|++||||||+.+.|+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999999974
No 214
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.0024 Score=57.64 Aligned_cols=38 Identities=13% Similarity=-0.040 Sum_probs=27.3
Q ss_pred HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
++........-....++|.|++|+||||+++.+++.++
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33333343322234599999999999999999999864
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.43 E-value=0.0013 Score=67.61 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
.+..|+|+|+|||||||+++.|+..++.+++..+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 5778999999999999999999999998876543
No 216
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0034 Score=55.72 Aligned_cols=41 Identities=17% Similarity=0.036 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..+++....+...-....++|.|++|+||||+++.+++.++
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34444444444333444699999999999999999999863
No 217
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.0019 Score=54.29 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=28.8
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCch
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS 126 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~ 126 (278)
--.|..++|+|++||||||+++.++...+ ..+++.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34688999999999999999999987444 33566543
No 218
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.39 E-value=0.0016 Score=57.03 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999999999965
No 219
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.004 Score=56.38 Aligned_cols=40 Identities=15% Similarity=0.072 Sum_probs=28.5
Q ss_pred HHHHHHHHhhh-hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 78 FAVKKKAADIS-TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..+.+....+. ..-....++|+|++|+||||+++.++..+
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444444 32233449999999999999999999965
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.34 E-value=0.0022 Score=57.02 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=24.6
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.-+|..++|+|++||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3468899999999999999999998754
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.0027 Score=53.32 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|+.++++|++|+||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999996666554
No 222
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.32 E-value=0.0018 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999999975
No 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.32 E-value=0.0022 Score=56.52 Aligned_cols=24 Identities=50% Similarity=0.584 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999999999975
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.31 E-value=0.0025 Score=58.11 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..|.|+|++||||||+.+.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 225
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.29 E-value=0.0019 Score=56.90 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999753
No 226
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.29 E-value=0.0024 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.101 Sum_probs=24.2
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
--.|..+.|+|++||||||+++.++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999999984
No 227
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.28 E-value=0.002 Score=57.37 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999999753
No 228
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.28 E-value=0.0029 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.070 Sum_probs=22.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+.|.|+|++||||||+...|+..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999999876
No 229
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.28 E-value=0.002 Score=56.46 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999753
No 230
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.28 E-value=0.002 Score=57.97 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999999753
No 231
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.28 E-value=0.002 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999754
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.27 E-value=0.0019 Score=66.39 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
.+..++|.|+||+||||+|+.||..++.+++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 567899999999999999999999999887653
No 233
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.27 E-value=0.002 Score=56.99 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999753
No 234
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.25 E-value=0.0026 Score=57.86 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|.+|.|+|++||||||+.+.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999999865
No 235
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.25 E-value=0.002 Score=56.57 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999999753
No 236
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.22 E-value=0.0022 Score=57.26 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 6889999999999999999999753
No 237
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.22 E-value=0.0018 Score=54.91 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHhCCc--eecC
Q 023749 96 VFLVGMNNAIKTHLGKFLADALRYY--YFDS 124 (278)
Q Consensus 96 I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~ 124 (278)
|+|+|.+||||||+|..|+.. |.+ |+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999977 754 4444
No 238
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.22 E-value=0.0027 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999753
No 239
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.21 E-value=0.0022 Score=56.92 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999999753
No 240
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.21 E-value=0.002 Score=55.72 Aligned_cols=25 Identities=36% Similarity=0.274 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999999753
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.21 E-value=0.0022 Score=57.32 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999999753
No 242
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.005 Score=54.56 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 80 ~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+++....+...-....++|.|++|+||||+++.+++.+
T Consensus 29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 33344444433333459999999999999999999986
No 243
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.19 E-value=0.0021 Score=55.32 Aligned_cols=25 Identities=32% Similarity=0.154 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999999863
No 244
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.17 E-value=0.0033 Score=56.01 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=24.9
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+--.|..++|+|++|+||||+++.++..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33468999999999999999999998754
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.15 E-value=0.0063 Score=61.45 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.4
Q ss_pred HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
...++..+++..-.+..++|+|+||+|||++++.|++.+
T Consensus 193 ~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 193 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp HHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 334445556555578899999999999999999999987
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.15 E-value=0.0042 Score=63.95 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
....+..+++..-....++|+|+||+|||++++.|++.+
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444455555544456679999999999999999999988
No 247
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.14 E-value=0.0026 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999999753
No 248
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.14 E-value=0.0032 Score=57.48 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..|+|+|++||||||+++.||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 46789999999999999999999766
No 249
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.14 E-value=0.0026 Score=56.29 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999999753
No 250
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.13 E-value=0.0026 Score=56.60 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999999999753
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.13 E-value=0.0032 Score=58.04 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..|.|+|++||||||+.+.|+..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 252
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.002 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+.|.|+|++||||||+.+.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998865
No 253
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.12 E-value=0.0031 Score=58.32 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=24.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+..+.|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 7789999999999999999999876543
No 254
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.11 E-value=0.0027 Score=57.11 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999997543
No 255
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.0041 Score=52.99 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=28.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCch
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~ 126 (278)
+--.|..++|+|++|+||||++..++... +..+++.+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 33478899999999999999988886543 233555543
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.07 E-value=0.0039 Score=56.47 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh----CC--ceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g~--~~iD~D~ 126 (278)
+|.+|+|+|++|+||||++..||..+ |. .+++.|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57899999999999999999998654 43 3566665
No 257
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.06 E-value=0.0029 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999753
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.05 E-value=0.0043 Score=56.14 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.5
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHH
Q 023749 88 STELKGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 88 ~~~~~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
...+.|..+.|+|++|+||||+.+.|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999999998
No 259
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.005 Score=51.83 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=26.5
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
....+.-....|+|+|.+|+||||+...|+..+.
T Consensus 22 ~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 22 REALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3333333567899999999999999999998763
No 260
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.02 E-value=0.0048 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.080 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+.|+|+|++||||||+.+.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998764
No 261
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.98 E-value=0.011 Score=53.62 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+..++|.|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999999875
No 262
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=95.98 E-value=0.0015 Score=60.47 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=22.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..++.|+|.|+.||||||+++.|++.|+
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999999875
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.95 E-value=0.0042 Score=58.01 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.+|.|+|++||||||+.+.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 47799999999999999999999865
No 264
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.95 E-value=0.0049 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.188 Sum_probs=24.0
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
-..|..+.|+|++||||||+++.++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 447999999999999999999999863
No 265
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.91 E-value=0.0078 Score=54.01 Aligned_cols=47 Identities=15% Similarity=-0.004 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749 78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (278)
Q Consensus 78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~ 124 (278)
..+++....+...-. +..+++.|++|+|||++++.+++.++.+++..
T Consensus 32 ~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 32 AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 444455555543222 34566778899999999999999999887653
No 266
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.91 E-value=0.0048 Score=55.11 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=28.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D 125 (278)
+..++|.|++|+||||+++.+++.+++.+++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 489999999999999999999999887677653
No 267
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.87 E-value=0.0026 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=23.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+..|+|.|++|+|||++|+.+++.++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34599999999999999999999886
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.87 E-value=0.0047 Score=54.26 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..+.|+|++||||||+.+.|+.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78899999999999999999753
No 269
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.85 E-value=0.0069 Score=54.73 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+++.+..+++ .+..|+|+|++|+|||++|+.++...
T Consensus 13 ~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 13 HLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34444444443 46789999999999999999999865
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.84 E-value=0.0048 Score=62.38 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=26.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.++|+|++|+|||++|+.|++.++.+++.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 69999999999999999999999977653
No 271
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.84 E-value=0.0048 Score=57.68 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 5889999999999999999999863
No 272
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.83 E-value=0.0032 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999999753
No 273
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.79 E-value=0.0044 Score=56.05 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999999753
No 274
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.78 E-value=0.0044 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=22.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
|..+.|+|++||||||+.+.|+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999999753
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.77 E-value=0.0055 Score=59.76 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.+|.|+|++||||||+.+.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 47799999999999999999999765
No 276
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.76 E-value=0.0048 Score=57.29 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..|+|+|++||||||+.+.|+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 68899999999999999999998754
No 277
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.75 E-value=0.0055 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999999853
No 278
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.75 E-value=0.0055 Score=57.20 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 5889999999999999999999853
No 279
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.74 E-value=0.008 Score=49.22 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
+...+|+|+.||||||+.++|.-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 44889999999999999999987665
No 280
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.73 E-value=0.0056 Score=57.68 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 5889999999999999999999863
No 281
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.73 E-value=0.005 Score=55.58 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.8
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..+.+..+.|+|++||||||+.+.|+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 456789999999999999999999963
No 282
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.72 E-value=0.0063 Score=56.83 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.9
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..+.|..++|+|++|+||||+.+.|+.
T Consensus 211 ~~~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 211 EALTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred HhcCCCEEEEECCCCccHHHHHHHHhc
Confidence 445789999999999999999999964
No 283
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.72 E-value=0.0058 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 5889999999999999999999853
No 284
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.70 E-value=0.0062 Score=56.86 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=24.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-+|..|+|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999998755
No 285
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.67 E-value=0.0061 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 5889999999999999999999853
No 286
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.67 E-value=0.0062 Score=57.10 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+|..+.|+|++||||||+.+.|+-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 589999999999999999999975
No 287
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.65 E-value=0.0064 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 6889999999999999999999853
No 288
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.63 E-value=0.005 Score=57.27 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 5889999999999999999999853
No 289
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.0056 Score=58.93 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|.++.|+|++||||||+.|.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 79999999999999999999998743
No 290
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.61 E-value=0.012 Score=49.54 Aligned_cols=29 Identities=24% Similarity=0.101 Sum_probs=24.5
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+.-....|+|+|.+|+||||+...|+..+
T Consensus 34 ~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 34 NKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33356789999999999999999999875
No 291
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.59 E-value=0.0042 Score=60.49 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.8
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
+.+..|+|.|+||+|||++|+.|+..++.
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999998753
No 292
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.58 E-value=0.0079 Score=55.25 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li 128 (278)
.|+-|+|+|.+|+||||++..|.++ |+.++.-|.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~ 178 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE 178 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence 5889999999999999999999874 99988766543
No 293
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.53 E-value=0.017 Score=51.56 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHhCCc--eecC
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADALRYY--YFDS 124 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~ 124 (278)
..++|.|++|+||||+++.+++.++.. +++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 699999999999999999999987643 4443
No 294
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.52 E-value=0.0084 Score=55.43 Aligned_cols=29 Identities=21% Similarity=0.028 Sum_probs=25.4
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+--.|..+.|+|++||||||+++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33478899999999999999999999865
No 295
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.51 E-value=0.009 Score=52.09 Aligned_cols=27 Identities=26% Similarity=-0.064 Sum_probs=23.4
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.|..++++|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 358899999999999999998888766
No 296
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.50 E-value=0.0057 Score=56.60 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=28.8
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHhCC--ceecC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRY--YYFDS 124 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~--~~iD~ 124 (278)
+-..+..++|.|+||+||||+|..++...|. .|++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4446778899999999999999999976553 46666
No 297
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.47 E-value=0.0079 Score=56.76 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|..+.|+|++||||||+.+.|+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 589999999999999999999975
No 298
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.46 E-value=0.0088 Score=54.79 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~ 126 (278)
.+.+|.|+|++|+||||++..||..+ |. -++|.|.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36789999999999999999999766 32 2456664
No 299
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.45 E-value=0.011 Score=53.21 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=27.0
Q ss_pred HHhhhhcc-C-CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 84 AADISTEL-K-GTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 84 ~~~~~~~~-~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
...|+..- . ...|+|.||||+|||.+|+.||..++.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44454432 2 347999999999999999999987643
No 300
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.43 E-value=0.005 Score=57.28 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999999853
No 301
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.43 E-value=0.01 Score=50.65 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.++.++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999886544
No 302
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.38 E-value=0.0095 Score=55.44 Aligned_cols=27 Identities=19% Similarity=0.125 Sum_probs=23.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..+..|+|+|++||||||+.+.++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345599999999999999999998765
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.38 E-value=0.016 Score=55.56 Aligned_cols=35 Identities=29% Similarity=0.260 Sum_probs=28.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l 127 (278)
+.+|+++|++|+||||++..||..+ |.. ++++|..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6789999999999999999999766 443 4677754
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.30 E-value=0.0084 Score=57.39 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=27.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~ 126 (278)
.+.+|+++|++||||||++..||..+ |.. +++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 36789999999999999999999766 433 456664
No 305
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.29 E-value=0.01 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+|+|++||||||+.+.|+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999763
No 306
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.27 E-value=0.01 Score=48.23 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.+..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999975
No 307
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.26 E-value=0.019 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..|.|+|+|||||||+-..|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998754
No 308
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.26 E-value=0.011 Score=52.73 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.3
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..+.|+|++||||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998755
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.25 E-value=0.0068 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..++|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999998654
No 310
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.25 E-value=0.011 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..+.|+|++||||||+.+.|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999998654
No 311
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.25 E-value=0.014 Score=53.50 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCcEEEE--EccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFL--VGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L--~G~~GSGKSTlAk~LAe~L 117 (278)
.+..++| +|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999999876
No 312
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.24 E-value=0.0086 Score=59.21 Aligned_cols=28 Identities=29% Similarity=0.403 Sum_probs=25.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~ 119 (278)
.+..++|+|++|+||||+++.++..+..
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4679999999999999999999997753
No 313
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.24 E-value=0.011 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=20.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+.|+++|.+|+||||+...|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 314
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.24 E-value=0.0055 Score=56.00 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=24.2
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 88 STELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 88 ~~~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...++|..+.|+|++|+||||+.+.|+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 3455799999999999999999999953
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.23 E-value=0.0071 Score=57.75 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCch
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~ 126 (278)
+.+|+|+|++|+||||++..||..+. ..+++.|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 35899999999999999999998762 44677764
No 316
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.16 E-value=0.012 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.5
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+|+|++|+||||+.+.|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
No 317
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.16 E-value=0.0063 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=22.5
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
+.-.+..|+|+|.+||||||+.+.|+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 33467889999999999999999885
No 318
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.15 E-value=0.012 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+++|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999753
No 319
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.15 E-value=0.012 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=22.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.++|+|++|+|||++|+.|++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 320
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.15 E-value=0.021 Score=52.63 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=26.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D 125 (278)
...+|+|+|.+|+||||+...|+..+ |.. +++.|
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34589999999999999999999876 433 45555
No 321
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.13 E-value=0.013 Score=49.92 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.2
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
|-..|..++|.|.||+|||++|..++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 456789999999999999999987653
No 322
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.11 E-value=0.013 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=23.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
++..|.++|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 323
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.09 E-value=0.015 Score=49.33 Aligned_cols=27 Identities=15% Similarity=-0.148 Sum_probs=23.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-+|+.++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999888876
No 324
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.07 E-value=0.014 Score=55.55 Aligned_cols=28 Identities=11% Similarity=-0.052 Sum_probs=24.9
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
-.+..|+|+|+.||||||+.+.|...+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4677899999999999999999988774
No 325
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.03 E-value=0.012 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999964
No 326
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.02 E-value=0.014 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999998875
No 327
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.02 E-value=0.015 Score=45.88 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=20.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 328
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.96 E-value=0.015 Score=54.18 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.6
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
+-..|..+.|.|+|||||||++..++..+ | ..|++...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 55578999999999999999999998764 3 23566543
No 329
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.96 E-value=0.013 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999999975
No 330
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.93 E-value=0.015 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+...|+++|.+|+||||+...|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999975
No 331
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.93 E-value=0.014 Score=57.14 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|++||||||+.+.|+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999753
No 332
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.92 E-value=0.019 Score=52.29 Aligned_cols=28 Identities=11% Similarity=-0.008 Sum_probs=24.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~ 120 (278)
+..++|.|++|+|||++|+.+|+.+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 3468999999999999999999998754
No 333
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.90 E-value=0.014 Score=57.48 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999997643
No 334
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=94.85 E-value=0.068 Score=48.39 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=38.7
Q ss_pred CCcEEEEEcC-HHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHH
Q 023749 186 HGISLWIDVP-PGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKW 262 (278)
Q Consensus 186 ~~~vV~L~a~-~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~ 262 (278)
..++|||..| .+++.+| .+++ .++ .+.+.....+.+..|. ..|.+|.| -+.++++++|.+
T Consensus 210 ~pi~IFI~PpS~e~L~~r~~~r~--~e~-~~~~~~r~~k~e~e~~~~fD~vIvN--------------ddle~a~~~l~~ 272 (292)
T 3tvt_A 210 YPVAVFIKPKSVDSVMEMNRRMT--EEQ-AKKTYERAIKMEQEFGEYFTGVVQG--------------DTIEEIYSKVKS 272 (292)
T ss_dssp CCEEEEECCSCHHHHHHTCTTSC--TTH-HHHHHHHHHHHHHHHTTTCSEEECC--------------SSHHHHHHHHHH
T ss_pred cceEEEEECCCHHHHHHHHhCCC--chh-HHHHHHHHHHHHHhhhhhCCEEEEC--------------cCHHHHHHHHHH
Confidence 4578999874 5667776 3332 222 2222222211122233 46888864 368999999999
Q ss_pred HhhhcCC
Q 023749 263 LYNASIS 269 (278)
Q Consensus 263 ~i~~~~~ 269 (278)
+|.+.-.
T Consensus 273 iI~~e~~ 279 (292)
T 3tvt_A 273 MIWSQSG 279 (292)
T ss_dssp HHHHHTC
T ss_pred HHHHhhC
Confidence 9975543
No 335
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.84 E-value=0.014 Score=53.52 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=31.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li 128 (278)
..|.-|+|+|.+|+||||+|-.|.+ .|+.++.-|.+.
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~ 181 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE 181 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence 4688899999999999999999976 699888755543
No 336
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.83 E-value=0.016 Score=54.80 Aligned_cols=27 Identities=26% Similarity=0.107 Sum_probs=23.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+--.|..+.|+|++||||||++..|+-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 333688999999999999999997764
No 337
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.82 E-value=0.013 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999997643
No 338
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.77 E-value=0.02 Score=53.01 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=28.9
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCc
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD 125 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D 125 (278)
+-..|..+.|.|+|||||||++..++... | ..|++.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44578999999999999999999998643 2 4466654
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.76 E-value=0.022 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999975
No 340
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.71 E-value=0.015 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 341
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.70 E-value=0.022 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+...|+|+|.+|+||||+...|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 466899999999999999999864
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.67 E-value=0.019 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+++|.+|+||||+.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 343
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.65 E-value=0.026 Score=58.04 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=25.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh---CCcee
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i 122 (278)
..++|+|++|+|||++|+.|++.+ +.+++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i 620 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 620 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence 379999999999999999999988 55543
No 344
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.65 E-value=0.023 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
....|+|+|++|+||||+...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 345
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.61 E-value=0.015 Score=56.75 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.|..|+|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57789999999999999999998655
No 346
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.61 E-value=0.022 Score=44.85 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998865
No 347
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.58 E-value=0.02 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.0
Q ss_pred cEEEEEccCCCcHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LA 114 (278)
..|+|+|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 479999999999999999884
No 348
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.58 E-value=0.019 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFL 113 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~L 113 (278)
-+|..+.|+|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 37899999999999999999993
No 349
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.56 E-value=0.026 Score=51.14 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=26.1
Q ss_pred hhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 88 STELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 88 ~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-+-..|..++|.|.||+||||++..++...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356679999999999999999999998654
No 350
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.55 E-value=0.022 Score=45.16 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.0
Q ss_pred cEEEEEccCCCcHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LA 114 (278)
..|+|+|.+|+||||+...|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999985
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.55 E-value=0.023 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.9
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 352
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.54 E-value=0.023 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999998865
No 353
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.022 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+++|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999864
No 354
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.52 E-value=0.022 Score=45.30 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999998863
No 355
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.52 E-value=0.024 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 356
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.52 E-value=0.023 Score=52.10 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=23.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+..|.|+|++|+||||+...|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999998754
No 357
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.50 E-value=0.025 Score=52.33 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=28.3
Q ss_pred hhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
.+.+--+|.++.|+|++|+||||+.+.|+..+.
T Consensus 64 ~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 64 GLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445555899999999999999999999998764
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.50 E-value=0.024 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999874
No 359
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.48 E-value=0.011 Score=58.49 Aligned_cols=29 Identities=10% Similarity=0.324 Sum_probs=25.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749 95 SVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD 123 (278)
.|+|+|+||+|||++|+.+++.++...+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 79999999999999999999988755443
No 360
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.46 E-value=0.023 Score=54.27 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=28.8
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg 118 (278)
..+.+--+|..+.|+|++||||||+.+.|+....
T Consensus 149 d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 149 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3455656899999999999999999999998663
No 361
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.44 E-value=0.025 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999964
No 362
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.44 E-value=0.027 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999964
No 363
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.42 E-value=0.028 Score=48.44 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh--CCc--eecCc
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYY--YFDSD 125 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~--~iD~D 125 (278)
+...++++|.+|+||||++..|+..+ |.. .+|.|
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45678889999999999999999766 433 46666
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.42 E-value=0.022 Score=55.73 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|.++.|+|+.||||||+.+.|+..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999864
No 365
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.42 E-value=0.025 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.2
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+....|+++|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34468999999999999999999753
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.40 E-value=0.019 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999999763
No 367
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.39 E-value=0.014 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999997543
No 368
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.38 E-value=0.026 Score=45.02 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
....|+|+|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999999764
No 369
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.38 E-value=0.039 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.++|.|++||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999877
No 370
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.38 E-value=0.018 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5889999999999999999999753
No 371
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.37 E-value=0.019 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=27.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
+..|+++|++|+||||++..||..+ | ..++|.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6789999999999999999999766 3 33567663
No 372
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.35 E-value=0.027 Score=44.28 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.34 E-value=0.03 Score=45.60 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999864
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.34 E-value=0.019 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..++|+|+.||||||+.+.|...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47889999999999999999853
No 375
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.34 E-value=0.025 Score=51.34 Aligned_cols=29 Identities=21% Similarity=0.013 Sum_probs=25.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+-..|..+.|.|+||+||||++..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34468899999999999999999998764
No 376
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.023 Score=56.51 Aligned_cols=25 Identities=36% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 6999999999999999999999863
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.33 E-value=0.027 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=20.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.32 E-value=0.024 Score=45.20 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=19.2
Q ss_pred cEEEEEccCCCcHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LA 114 (278)
..|+|+|.+|+||||+...|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 479999999999999999885
No 379
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.29 E-value=0.031 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 023749 95 SVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|+++|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 380
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.29 E-value=0.021 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCcE--EEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTS--VFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~--I~L~G~~GSGKSTlAk~LAe 115 (278)
.|.. +.|+|++||||||+.+.|+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 5777 99999999999999999965
No 381
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.28 E-value=0.029 Score=44.69 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=20.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+|+|.+|+||||+...|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999753
No 382
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.25 E-value=0.016 Score=57.25 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+|..+.|+|++||||||+.+.|+.-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999999753
No 383
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.24 E-value=0.029 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999975
No 384
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.23 E-value=0.031 Score=51.97 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=29.2
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecC
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDS 124 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~ 124 (278)
+-..|..+.|.|+||+||||+|..++... | ..|+|+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45578999999999999999999988653 3 446776
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.21 E-value=0.023 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999875
No 386
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.20 E-value=0.03 Score=45.32 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.2
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
...|+|+|.+|+||||+...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999764
No 387
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.18 E-value=0.04 Score=52.36 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=32.7
Q ss_pred HHHHHHHHhhh-hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 78 FAVKKKAADIS-TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 78 ~~~~~~~~~~~-~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
...=-|+.++. +--+|..+.|+|++|+||||+++.|+...
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44555667666 66689999999999999999999998754
No 388
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.18 E-value=0.031 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 446899999999999999999975
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.18 E-value=0.03 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+.+.|..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999976
No 390
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.18 E-value=0.022 Score=56.60 Aligned_cols=25 Identities=40% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+-.
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 6889999999999999999999753
No 391
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.17 E-value=0.028 Score=51.58 Aligned_cols=27 Identities=19% Similarity=-0.063 Sum_probs=23.8
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
--.|..+.|+|++||||||++..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 336789999999999999999999876
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.16 E-value=0.029 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999864
No 393
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.16 E-value=0.027 Score=56.06 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|+.||||||+.+.|+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999999863
No 394
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.15 E-value=0.031 Score=44.45 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999974
No 395
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.13 E-value=0.03 Score=53.42 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
.+.+|+++|++|+||||++..||..+ | ..+++.|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 47789999999999999999999876 3 23456664
No 396
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.12 E-value=0.014 Score=57.38 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999996533
No 397
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.11 E-value=0.03 Score=45.23 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999864
No 398
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.10 E-value=0.032 Score=54.15 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=25.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+--+|..+.|.|++||||||+++.++..+
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34478999999999999999999998654
No 399
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.10 E-value=0.032 Score=44.97 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+.+.|..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.10 E-value=0.036 Score=52.78 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=25.0
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+--.|..++|.|.||+||||++..++...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 55578999999999999999999988643
No 401
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.09 E-value=0.028 Score=45.54 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+|+|.+|+||||+.+.|...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999888654
No 402
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.07 E-value=0.034 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
....|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3458999999999999999998653
No 403
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.06 E-value=0.047 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+....++|+|+||+||||+.+.+...+
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 404
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.05 E-value=0.031 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.184 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999964
No 405
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.04 E-value=0.034 Score=44.80 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.....|+|+|.+|+||||+...|..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999975
No 406
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.03 E-value=0.043 Score=53.38 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...+|.|+|+.|.||||+|+.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999995
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.01 E-value=0.035 Score=45.69 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+...|+++|.+|+||||+.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999975
No 408
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.00 E-value=0.03 Score=50.47 Aligned_cols=28 Identities=11% Similarity=-0.085 Sum_probs=24.3
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+-..|..+.|.|+||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446889999999999999999999865
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.035 Score=44.38 Aligned_cols=22 Identities=36% Similarity=0.247 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999965
No 410
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.99 E-value=0.034 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=20.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 411
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.98 E-value=0.04 Score=51.42 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=29.4
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~ 126 (278)
+...|..|.|.|+||+||||+|..++... | ..|++++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45578999999999999999999888653 3 44666543
No 412
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.98 E-value=0.024 Score=53.90 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.+..+.|+|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455899999999999999999975
No 413
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.98 E-value=0.019 Score=56.72 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|+.-+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999997543
No 414
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.98 E-value=0.036 Score=44.39 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999865
No 415
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.96 E-value=0.031 Score=54.44 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~ 126 (278)
+.+|+|+|.+|+||||++..|+..+ |.. +++.|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 4589999999999999999999765 543 466654
No 416
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.90 E-value=0.033 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 456899999999999999999864
No 417
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.90 E-value=0.026 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
....|+|+|.+|+||||+...|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999999998874
No 418
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.86 E-value=0.039 Score=51.13 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=24.5
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
...+.+++++|++||||||+.+.+...+
T Consensus 32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 32 DRTNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp TBCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998654
No 419
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.85 E-value=0.035 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.....|+|+|.+|+||||+...|..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999875
No 420
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.84 E-value=0.046 Score=52.84 Aligned_cols=34 Identities=24% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 84 ~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+..+.+.++|.++.|.|++|+||||+++.|+...
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 4556688899999999999999999999887654
No 421
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.83 E-value=0.037 Score=52.79 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=27.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh----CCc--eecCch
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL----RYY--YFDSDS 126 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L----g~~--~iD~D~ 126 (278)
+.+|+++|..|+||||++..||..+ |.. ++|+|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 5689999999999999999999765 444 467774
No 422
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.79 E-value=0.04 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4799999999999999999975
No 423
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.042 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
...|+|+|.+|+||||+...|...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3579999999999999999998653
No 424
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.77 E-value=0.038 Score=44.42 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.3
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.036 Score=55.20 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
.|..+.|+|++||||||+.+.|+..
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred cceEEEEECCCCCcHHHHHHHHhcC
Confidence 3578999999999999999999763
No 426
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.75 E-value=0.035 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 456899999999999999999975
No 427
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.74 E-value=0.048 Score=43.61 Aligned_cols=24 Identities=21% Similarity=-0.016 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 428
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.73 E-value=0.041 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
...|+|+|.+|+||||+...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999653
No 429
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.68 E-value=0.039 Score=44.95 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999864
No 430
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.67 E-value=0.039 Score=45.20 Aligned_cols=25 Identities=20% Similarity=-0.036 Sum_probs=21.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.+...|+|+|.+|+||||+...+..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999988765
No 431
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.66 E-value=0.041 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+++|.+|+||||+...|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999864
No 432
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.046 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45899999999999999999975
No 433
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.65 E-value=0.046 Score=44.86 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999976
No 434
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.65 E-value=0.043 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 435
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.64 E-value=0.043 Score=44.96 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999975
No 436
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.64 E-value=0.048 Score=47.34 Aligned_cols=27 Identities=11% Similarity=-0.166 Sum_probs=23.6
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.|+..+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 357889999999999999998888766
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.045 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 438
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.61 E-value=0.04 Score=45.72 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
.+...|+|+|.+|+||||+.+.|.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 445689999999999999999885
No 439
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.58 E-value=0.034 Score=44.54 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999976
No 440
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.57 E-value=0.046 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=20.6
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999865
No 441
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.53 E-value=0.03 Score=55.61 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=25.1
Q ss_pred HhhhhccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..+...+.-..|+|+|++||||||+.+.|+.
T Consensus 37 ~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 37 LGVEQDLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp HSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred CCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence 3344456666799999999999999999975
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.50 E-value=0.044 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999864
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.49 E-value=0.048 Score=44.65 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHh
Confidence 345899999999999999998875
No 444
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.47 E-value=0.048 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999975
No 445
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.47 E-value=0.048 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.5
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 446
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=93.45 E-value=0.35 Score=43.56 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
-.++.|+|+|| ||+|+.+.|-+.+
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHC
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhC
Confidence 35788999998 7999999998865
No 447
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.45 E-value=0.049 Score=44.49 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 448
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.42 E-value=0.05 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 446899999999999999999975
No 449
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.049 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 466899999999999999999974
No 450
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.41 E-value=0.051 Score=45.14 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
....|+|+|.+|+||||+...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999763
No 451
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.41 E-value=0.054 Score=51.36 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=24.6
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
+-..|..++|+|.||+||||++..++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 5557889999999999999999998864
No 452
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.40 E-value=0.039 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.7
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
.....|+|+|.+|+||||+...|.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 456689999999999999999885
No 453
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.40 E-value=0.045 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+...|+|+|.+|+||||+...|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999964
No 454
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.40 E-value=0.049 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+.+.|..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999976
No 455
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.37 E-value=0.05 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.34 E-value=0.047 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
+...|+|+|.+|+||||+...|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999884
No 457
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.33 E-value=0.055 Score=43.62 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+...+|+|+.||||||+..++.=.|
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999887555
No 458
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.052 Score=45.42 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+.+.|..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 459
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.24 E-value=0.045 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.088 Sum_probs=21.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHHHh
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
..+.|+|++||||||+.+.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 688999999999999999998755
No 460
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.20 E-value=0.055 Score=53.62 Aligned_cols=28 Identities=25% Similarity=0.082 Sum_probs=23.4
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
.+.+..+++.|++|+||||+...+...+
T Consensus 161 ~l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 161 ALTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999888776554
No 461
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.20 E-value=0.053 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.3
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.....|+|+|.+|+||||+...|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999964
No 462
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.19 E-value=0.066 Score=49.48 Aligned_cols=29 Identities=21% Similarity=-0.009 Sum_probs=25.6
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+...|..|+|.|.||+||||++..+|...
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66678999999999999999999998753
No 463
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.19 E-value=0.057 Score=44.55 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999999874
No 464
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.17 E-value=0.056 Score=44.89 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 465
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.16 E-value=0.041 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.2
Q ss_pred cEEEEEccCCCcHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LA 114 (278)
..|+|+|.+|+||||+.+.|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999884
No 466
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.16 E-value=0.049 Score=57.13 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|.++.|+|++||||||+.+.|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 688999999999999999999984
No 467
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.14 E-value=0.054 Score=44.83 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.1
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+.+.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999863
No 468
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.14 E-value=0.048 Score=52.86 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|.|+|++|+||||+++.++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 356899999999999999999863
No 469
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.11 E-value=0.052 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999853
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.11 E-value=0.058 Score=44.82 Aligned_cols=25 Identities=20% Similarity=0.021 Sum_probs=21.0
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.....|+|+|.+|+||||+...+..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3467899999999999999998875
No 471
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.07 E-value=0.057 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.6
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998864
No 472
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.07 E-value=0.048 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|++|+||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4579999999999999999853
No 473
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.04 E-value=0.06 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.2
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999976
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.02 E-value=0.065 Score=46.98 Aligned_cols=32 Identities=22% Similarity=-0.085 Sum_probs=25.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749 95 SVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (278)
Q Consensus 95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~ 126 (278)
+|++.|.+|+||||++-.+|..+ |+. +++.|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 58889999999999988888665 655 457763
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.063 Score=43.78 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=20.7
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+|+|.+|+||||+...|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999764
No 476
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.97 E-value=0.035 Score=44.74 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=10.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998864
No 477
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.95 E-value=0.057 Score=45.71 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999854
No 478
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.91 E-value=0.055 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred CCcEEEEEccCCCcHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LA 114 (278)
+...|+|.|.+||||||++|.+.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999999984
No 479
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.90 E-value=0.061 Score=44.77 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=19.8
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999864
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.88 E-value=0.066 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 4799999999999999999964
No 481
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.86 E-value=0.12 Score=45.38 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.3
Q ss_pred ccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
......|+|+|.+|+||||+...|..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHC
Confidence 34566899999999999999999964
No 482
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.84 E-value=0.061 Score=46.80 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...+|+|+|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999998853
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.82 E-value=0.05 Score=44.29 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998854
No 484
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.78 E-value=0.064 Score=44.93 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=20.9
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999864
No 485
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.76 E-value=0.077 Score=50.59 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=25.4
Q ss_pred hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
|...|..|+|.|.||+||||++..+|...
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 55678999999999999999999888754
No 486
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.71 E-value=0.068 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred cEEEEEccCCCcHHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLADA 116 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe~ 116 (278)
..|+|+|.+|+||||+...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999753
No 487
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.70 E-value=0.072 Score=44.15 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCcHHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
...|+|+|.+|+||||+...|..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 488
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.67 E-value=0.12 Score=45.78 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHhhhh-----ccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 79 AVKKKAADIST-----ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 79 ~~~~~~~~~~~-----~~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.+.++.+++.. .+....|+|+|.+|+||||+...|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHC
Confidence 34455555543 24556899999999999999999953
No 489
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.62 E-value=0.054 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.7
Q ss_pred CcEEEEEccCCCcHHHHHHHHH
Q 023749 93 GTSVFLVGMNNAIKTHLGKFLA 114 (278)
Q Consensus 93 ~~~I~L~G~~GSGKSTlAk~LA 114 (278)
...|+++|.+|+||||+...|.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999883
No 490
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.61 E-value=0.069 Score=46.90 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.9
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+.|+|+|.+|+||||+...|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999999964
No 491
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.52 E-value=0.079 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.1
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.....|+|+|.+|+||||+...|..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 4457899999999999999999975
No 492
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.51 E-value=0.062 Score=57.98 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe~L 117 (278)
+|..+.|+|++||||||+.+.|...+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 69999999999999999999996543
No 493
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.48 E-value=0.041 Score=54.94 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.8
Q ss_pred CCcEEEEEccCCCcHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFL 113 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~L 113 (278)
.|..+.|+|++||||||+.+.+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEEeeCCCCHHHHHHHH
Confidence 5889999999999999999754
No 494
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.47 E-value=0.08 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
++..|.|+|++|+||||+-+.|..
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 477999999999999999999986
No 495
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.47 E-value=0.1 Score=46.15 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=23.5
Q ss_pred hhhccCC--cEEEEEccCCCcHHHHHHHHHH
Q 023749 87 ISTELKG--TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 87 ~~~~~~~--~~I~L~G~~GSGKSTlAk~LAe 115 (278)
+...+.. ..|+++|.||+||||+...|..
T Consensus 91 L~~~l~~~~~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 91 LKKLSFDRLARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp HHHHCCCTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHhhhheEEeCCCCCCHHHHHHHHhc
Confidence 3444555 5899999999999999999974
No 496
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.40 E-value=0.049 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.2
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+...|..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 456899999999999999998864
No 497
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.39 E-value=0.081 Score=43.48 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
....|+|+|.+|+||||+.+.+..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999887754
No 498
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.088 Score=44.28 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=20.1
Q ss_pred cEEEEEccCCCcHHHHHHHHHH
Q 023749 94 TSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 94 ~~I~L~G~~GSGKSTlAk~LAe 115 (278)
..|+|+|.+|+||||+...|..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 499
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.16 E-value=0.044 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCcHHHHHHHHHH
Q 023749 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 92 ~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.|.++.|+|++||||||+.+.|+.
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999999975
No 500
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.11 E-value=0.064 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.065 Sum_probs=21.5
Q ss_pred cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (278)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTlAk~LAe 115 (278)
.+...|.|+|.+|+||||+...|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 4455799999999999999999964
Done!