BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023751
         (278 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B8GKG7|DAPA_METPE 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanosphaerula
           palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)
           GN=dapA PE=3 SV=1
          Length = 291

 Score = 40.0 bits (92), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 148 NIKPSKQLVFYRGYSSAHFRGGDWDSGGSCNGETEPIFSGPFLDSYPLKMK 198
           N++P + +  YR Y+      GDWD   S + E  P+F   F+DS P+ +K
Sbjct: 210 NVEPERMVGMYRAYTE-----GDWDDAISLHYELAPLFRALFIDSNPIPVK 255


>sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana
           GN=CPN60B4 PE=1 SV=1
          Length = 611

 Score = 38.1 bits (87), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 30  YEIYGHKITKGRGYYVFTFLDYNCTVEFVRSHFLVKEGVRINGQGDSNPTLSVDQIDKTA 89
            E  G K+ +  G           T   + +H L+ EG+++   G +NP     Q+ +  
Sbjct: 105 LENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAG-TNPI----QVARGI 159

Query: 90  NKWKRADILVFNT------GHWWVHGKTARGKNYFKEGDYLYPKFDAVEAYRRALKTWGK 143
            K  +A +L   +       H   H       N ++ G+ +   F  V          GK
Sbjct: 160 EKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGK 219

Query: 144 WIDDNIKPSKQLVFYRGYSSAHF 166
           ++ +N++  + + F RGY S +F
Sbjct: 220 YLVNNLEIVEGMQFNRGYLSPYF 242


>sp|Q9LRC8|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS
           PE=1 SV=1
          Length = 527

 Score = 31.6 bits (70), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 75  DSNPTLSVDQIDKTANKWKRADILVFNTGHWWV------HGKTARGKNYFKEGDYLYPKF 128
           ++N  L       + ++W   +  +  TG   V       GKT   K   K+G YL    
Sbjct: 119 NTNLILDFSHACLSLDRWDEINQFILETGSEAVFGLNALRGKTVEIKGIIKDGQYLGETT 178

Query: 129 DAVEAYRRALKTWGKWIDDNIKPSKQLVFYRGYSSAHFRGGDWDSGGSCNGETEPIFSGP 188
            AV          G+W   N K   +    +GY   H RG  W  G    G T  +F G 
Sbjct: 179 TAV----------GEWDYSNSKFLIEYSLKKGYK--HIRG--WTLGNELGGHT--LFIGV 222

Query: 189 FLDSYPLKMKIVEEVIQEM 207
             + Y    K + E+++E+
Sbjct: 223 SPEDYANDAKKLHELVKEI 241


>sp|Q3AET5|GCSPA_CARHZ Probable glycine dehydrogenase [decarboxylating] subunit 1
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=gcvPA PE=3 SV=1
          Length = 444

 Score = 31.2 bits (69), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 182 EPIFSGPFLDSYPLKMKIVEEVIQEMRNPVIL 213
           EP+FSGPF   + +K+K  EE+ Q++    IL
Sbjct: 373 EPLFSGPFFKEFVVKVKNEEEITQKLLKHHIL 404


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.139    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,001,089
Number of Sequences: 539616
Number of extensions: 4831997
Number of successful extensions: 8983
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8980
Number of HSP's gapped (non-prelim): 7
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)