BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023753
MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK
LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEKLL
KKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNN
NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS
DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW

High Scoring Gene Products

Symbol, full name Information P value
AT1G80130 protein from Arabidopsis thaliana 7.2e-36
AT5G20190 protein from Arabidopsis thaliana 3.4e-34
AT4G32340 protein from Arabidopsis thaliana 1.6e-24
AT4G17940 protein from Arabidopsis thaliana 2.1e-20
TPR4
tetratricopeptide repeat 4
protein from Arabidopsis thaliana 4.2e-14
AT1G07280 protein from Arabidopsis thaliana 1.1e-10
AT2G29670 protein from Arabidopsis thaliana 1.2e-09
AT3G47080 protein from Arabidopsis thaliana 1.1e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023753
        (277 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2016229 - symbol:AT1G80130 species:3702 "Arabi...   304  7.2e-36   2
TAIR|locus:2149314 - symbol:AT5G20190 "AT5G20190" species...   331  3.4e-34   2
TAIR|locus:2127781 - symbol:AT4G32340 "AT4G32340" species...   280  1.6e-24   1
TAIR|locus:2141030 - symbol:AT4G17940 "AT4G17940" species...   241  2.1e-20   1
TAIR|locus:2197768 - symbol:TPR4 "tetratricopeptide repea...   184  4.2e-14   1
TAIR|locus:2025067 - symbol:AT1G07280 "AT1G07280" species...   159  1.1e-10   1
TAIR|locus:2060669 - symbol:AT2G29670 species:3702 "Arabi...   149  1.2e-09   1
TAIR|locus:2075616 - symbol:AT3G47080 species:3702 "Arabi...   121  1.1e-05   2


>TAIR|locus:2016229 [details] [associations]
            symbol:AT1G80130 species:3702 "Arabidopsis thaliana"
            [GO:0016020 "membrane" evidence=IDA] [GO:0006979 "response to
            oxidative stress" evidence=IMP] InterPro:IPR011990 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0016020
            Gene3D:1.25.40.10 EMBL:AC009322 EMBL:AY034991 EMBL:AY063018
            EMBL:AY087456 IPI:IPI00544333 PIR:H96832 RefSeq:NP_565230.1
            UniGene:At.23459 ProteinModelPortal:Q9SSC6 SMR:Q9SSC6 PRIDE:Q9SSC6
            EnsemblPlants:AT1G80130.1 GeneID:844353 KEGG:ath:AT1G80130
            TAIR:At1g80130 eggNOG:NOG245836 HOGENOM:HOG000029161
            InParanoid:Q9SSC6 OMA:CERAILG PhylomeDB:Q9SSC6
            ProtClustDB:CLSN2917505 ArrayExpress:Q9SSC6 Genevestigator:Q9SSC6
            Uniprot:Q9SSC6
        Length = 305

 Score = 304 (112.1 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 56/85 (65%), Positives = 68/85 (80%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             TD YY +MI++NPGN+LL GNYA+FLKEV+GD  KAEE C RAIL N +DGN+LSLYADL
Sbjct:   165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query:   252 IWQAHKDASRAESYFDQAVKSAPDD 276
             I   H+D  RA SY+ QAVK +P+D
Sbjct:   225 ILHNHQDRQRAHSYYKQAVKMSPED 249

 Score = 99 (39.9 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 31/91 (34%), Positives = 43/91 (47%)

Query:     1 MLLRSSSTPILHSWLPQYSKDXXXXXXXXXXTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
             MLLRS+S PIL+SWLPQ+              EPE Q+ +R+ S+SL            +
Sbjct:     1 MLLRSTSAPILNSWLPQHCS-------RESSPEPESQLWRRSTSLSLFSSKSIDGHTGEQ 53

Query:    61 LLTTIYQRKEIRDSQMNKKGNIRALKPPPAS 91
             L   +   KEI    +  K N  + K P +S
Sbjct:    54 LHQALSDNKEI--IILKSKSNEHSYKTPTSS 82

 Score = 67 (28.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 16/66 (24%), Positives = 29/66 (43%)

Query:   193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
             + Y E+ I  N  +  +L  YA  +     D  +A     +A+  +P D  + + YA  +
Sbjct:   201 EEYCERAILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFL 260

Query:   253 WQAHKD 258
             W   +D
Sbjct:   261 WDVDED 266


>TAIR|locus:2149314 [details] [associations]
            symbol:AT5G20190 "AT5G20190" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR011990 InterPro:IPR013026
            PROSITE:PS50293 EMBL:CP002688 Gene3D:1.25.40.10 IPI:IPI00528919
            RefSeq:NP_197519.1 UniGene:At.31218 ProteinModelPortal:F4K464
            SMR:F4K464 PRIDE:F4K464 EnsemblPlants:AT5G20190.1 GeneID:832142
            KEGG:ath:AT5G20190 OMA:HEEELEH PhylomeDB:F4K464 Uniprot:F4K464
        Length = 290

 Score = 331 (121.6 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 57/85 (67%), Positives = 74/85 (87%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             TD +Y KMIEANPGN + L NYA+FLKEVR D+ KAEE CGRAIL +P+DGN+L++YA+L
Sbjct:   156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215

Query:   252 IWQAHKDASRAESYFDQAVKSAPDD 276
             +W+ HKD+SRAE+YF+QAV +AP+D
Sbjct:   216 VWKIHKDSSRAENYFNQAVAAAPED 240

 Score = 56 (24.8 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query:     1 MLLRSSSTPILHSWLPQYSKDXXXXXXXXXXTEPELQVLQRTRSVSLS 48
             MLLRS+STP+L+S L   S            T   +  +QR RS++LS
Sbjct:     1 MLLRSASTPLLNS-LVHVSSPRDSPIE----TVESVHQIQRHRSITLS 43


>TAIR|locus:2127781 [details] [associations]
            symbol:AT4G32340 "AT4G32340" species:3702 "Arabidopsis
            thaliana" [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            InterPro:IPR011990 EMBL:CP002687 GenomeReviews:CT486007_GR
            Gene3D:1.25.40.10 EMBL:AL161581 EMBL:AL034567 EMBL:AL021811
            EMBL:AY087384 EMBL:AY150386 IPI:IPI00532347 PIR:T05344
            RefSeq:NP_194960.1 UniGene:At.2033 ProteinModelPortal:O49358
            SMR:O49358 STRING:O49358 PRIDE:O49358 EnsemblPlants:AT4G32340.1
            GeneID:829368 KEGG:ath:AT4G32340 TAIR:At4g32340 eggNOG:NOG269023
            HOGENOM:HOG000114717 InParanoid:O49358 OMA:YHEETAS PhylomeDB:O49358
            ProtClustDB:CLSN2916166 Genevestigator:O49358 Uniprot:O49358
        Length = 238

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 53/85 (62%), Positives = 66/85 (77%)

Query:   193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADL 251
             D YYE+MI+  PG+ LLL NYARFLKEV+GD  KAEE C RA+L+    DG +LS+Y DL
Sbjct:   111 DGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDL 170

Query:   252 IWQAHKDASRAESYFDQAVKSAPDD 276
             IW+ H D  RA+SY+DQAV+S+PDD
Sbjct:   171 IWKNHGDGVRAQSYYDQAVQSSPDD 195


>TAIR|locus:2141030 [details] [associations]
            symbol:AT4G17940 "AT4G17940" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR011990 InterPro:IPR013026
            PROSITE:PS50293 EMBL:CP002687 Gene3D:1.25.40.10 EMBL:AK226990
            IPI:IPI00547432 RefSeq:NP_567545.1 UniGene:At.43075
            ProteinModelPortal:Q0WUZ1 SMR:Q0WUZ1 PRIDE:Q0WUZ1
            EnsemblPlants:AT4G17940.1 GeneID:827519 KEGG:ath:AT4G17940
            TAIR:At4g17940 HOGENOM:HOG000092984 InParanoid:Q0WUZ1 OMA:NDCMVLG
            PhylomeDB:Q0WUZ1 ProtClustDB:CLSN2689490 Genevestigator:Q0WUZ1
            Uniprot:Q0WUZ1
        Length = 274

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 45/82 (54%), Positives = 57/82 (69%)

Query:   195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
             YY +M+ +NP N+LLL NY +FL EV  D   AEE  GRAIL NP DG  LS+Y  LIW+
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   255 AHKDASRAESYFDQAVKSAPDD 276
               +D  RA+ YFDQAV ++P+D
Sbjct:   213 TKRDEKRAQGYFDQAVNASPND 234

 Score = 108 (43.1 bits), Expect = 0.00038, P = 0.00038
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query:   193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
             + YY + I  NPG+   L  Y R + E + D  +A+    +A+ A+P+D  +L  YA  +
Sbjct:   186 EEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFM 245

Query:   253 WQAHKD 258
             W+A  D
Sbjct:   246 WEAEDD 251


>TAIR|locus:2197768 [details] [associations]
            symbol:TPR4 "tetratricopeptide repeat 4" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            Pfam:PF13181 PROSITE:PS50293 EMBL:CP002684 Gene3D:1.25.40.10
            EMBL:AY065305 EMBL:AY096435 IPI:IPI00522781 RefSeq:NP_563709.1
            UniGene:At.28463 ProteinModelPortal:Q8VZ31 SMR:Q8VZ31 PRIDE:Q8VZ31
            EnsemblPlants:AT1G04530.1 GeneID:839500 KEGG:ath:AT1G04530
            TAIR:At1g04530 InParanoid:Q8VZ31 OMA:INNDHEK PhylomeDB:Q8VZ31
            ProtClustDB:CLSN2916961 ArrayExpress:Q8VZ31 Genevestigator:Q8VZ31
            Uniprot:Q8VZ31
        Length = 310

 Score = 184 (69.8 bits), Expect = 4.2e-14, P = 4.2e-14
 Identities = 37/82 (45%), Positives = 56/82 (68%)

Query:   195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
             YY+ M+E  P + LLL NYA+FL E +GD + AEE   +  +  PSDG  L+ Y  L+ +
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   255 AHKDASRAESYFDQAVKSAPDD 276
              H+D ++A SYF++AV+++PDD
Sbjct:   183 LHQDEAKAMSYFERAVQASPDD 204

 Score = 118 (46.6 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 22/66 (33%), Positives = 35/66 (53%)

Query:   193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
             + YY K     P + + L NY R + ++  D AKA     RA+ A+P D  +L+ YA  +
Sbjct:   156 EEYYHKCTVVEPSDGVALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFL 215

Query:   253 WQAHKD 258
             W+ + D
Sbjct:   216 WEINAD 221


>TAIR|locus:2025067 [details] [associations]
            symbol:AT1G07280 "AT1G07280" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0000023
            "maltose metabolic process" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] InterPro:IPR011990
            InterPro:IPR013026 PROSITE:PS50293 EMBL:CP002684 Gene3D:1.25.40.10
            UniGene:At.28743 HOGENOM:HOG000241467 ProtClustDB:CLSN2688551
            EMBL:AY065061 EMBL:AY133574 IPI:IPI00540005 RefSeq:NP_001030984.1
            RefSeq:NP_001117242.1 RefSeq:NP_172208.2 UniGene:At.20235
            ProteinModelPortal:Q8VZC8 SMR:Q8VZC8 EnsemblPlants:AT1G07280.1
            EnsemblPlants:AT1G07280.2 EnsemblPlants:AT1G07280.3 GeneID:837239
            KEGG:ath:AT1G07280 TAIR:At1g07280 InParanoid:Q8VZC8 OMA:EETYLEA
            PhylomeDB:Q8VZC8 Genevestigator:Q8VZC8 Uniprot:Q8VZC8
        Length = 552

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 32/83 (38%), Positives = 48/83 (57%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   PGN LLL NYA+FL  +  D+ +AE+   RA  A P+D   L+ YA  
Sbjct:   435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query:   252 IWQAHKDASRAESYFDQAVKSAP 274
             +W+A  D  RAE  + +A+ + P
Sbjct:   495 LWRARNDIWRAEETYLEAISADP 517


>TAIR|locus:2060669 [details] [associations]
            symbol:AT2G29670 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR011990
            InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
            PROSITE:PS50293 EMBL:CP002685 GenomeReviews:CT485783_GR
            Gene3D:1.25.40.10 EMBL:AC005496 EMBL:AF375460 EMBL:AY074336
            EMBL:AY096656 EMBL:BT000642 IPI:IPI00536136 PIR:B84699
            RefSeq:NP_565685.1 UniGene:At.28743 ProteinModelPortal:O82388
            SMR:O82388 EnsemblPlants:AT2G29670.1 GeneID:817517
            KEGG:ath:AT2G29670 TAIR:At2g29670 HOGENOM:HOG000241467
            InParanoid:O82388 OMA:DDESHED PhylomeDB:O82388
            ProtClustDB:CLSN2688551 Genevestigator:O82388 Uniprot:O82388
        Length = 536

 Score = 149 (57.5 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 32/83 (38%), Positives = 43/83 (51%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   P N LLL NYA+FL  V  D  +AEE   RA+   P D    S YA  
Sbjct:   420 TELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATF 479

Query:   252 IWQAHKDASRAESYFDQAVKSAP 274
             +W+A  D   AE  F +A+ + P
Sbjct:   480 LWRARDDLWAAEETFLEAIDADP 502


>TAIR|locus:2075616 [details] [associations]
            symbol:AT3G47080 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011990
            InterPro:IPR013026 PROSITE:PS50293 EMBL:CP002686
            GenomeReviews:BA000014_GR Gene3D:1.25.40.10 EMBL:AL133292
            HOGENOM:HOG000241467 EMBL:AY039956 EMBL:AY079400 IPI:IPI00548619
            PIR:T45644 RefSeq:NP_190292.1 UniGene:At.22244
            ProteinModelPortal:Q9SD65 SMR:Q9SD65 IntAct:Q9SD65
            EnsemblPlants:AT3G47080.1 GeneID:823861 KEGG:ath:AT3G47080
            TAIR:At3g47080 eggNOG:NOG260732 InParanoid:Q9SD65 OMA:HERAENC
            PhylomeDB:Q9SD65 ProtClustDB:CLSN2915688 ArrayExpress:Q9SD65
            Genevestigator:Q9SD65 Uniprot:Q9SD65
        Length = 515

 Score = 121 (47.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 29/83 (34%), Positives = 41/83 (49%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   P N LLL NYA+FL  V  D  +AE    +AI +   D    S YA  
Sbjct:   400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query:   252 IWQAHKDASRAESYFDQAVKSAP 274
             +W+   D   AE  F +A+ + P
Sbjct:   460 LWKVRNDLWAAEENFLEAISADP 482

 Score = 36 (17.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query:    33 EPELQVLQRTRSVSLSDDHHHHQSRKHKLL 62
             E E +  Q++ +V   +D ++H+    KLL
Sbjct:   131 EEEEENKQKSEAVDNDNDSNNHRFGSLKLL 160


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       185   0.00080  110 3  11 22  0.46    32
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  167 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.80u 0.08s 15.88t   Elapsed:  00:00:01
  Total cpu time:  15.80u 0.08s 15.88t   Elapsed:  00:00:01
  Start:  Tue May 21 00:12:06 2013   End:  Tue May 21 00:12:07 2013

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