BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023753
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
 pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
          Length = 131

 Score = 33.5 bits (75), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240
           +Y K IE NP NA+   N A    ++ G++A A + C RAI  +P+
Sbjct: 34  FYGKAIELNPANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPA 78


>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
           Non-Cognate Hsc70 Peptide Ligand
          Length = 129

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235
           Y+K  E +P N   + N A    E +GD+ K  ELC +AI
Sbjct: 27  YDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAI 65


>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
           With The Hsp90 Peptide Meevd
          Length = 131

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235
           Y+K  E +P N   + N A    E +GD+ K  ELC +AI
Sbjct: 27  YDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAI 65


>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
           In Complex With Meevf Peptide
 pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
           In Complex With Meevf Peptide
          Length = 128

 Score = 28.9 bits (63), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235
           Y+K  E +P N   + N A    E +GD+ K  ELC +AI
Sbjct: 27  YDKAKELDPTNMTYIVNQAAVYFE-KGDYNKCRELCEKAI 65


>pdb|1KLX|A Chain A, Helicobacter Pylori Cysteine Rich Protein B (Hcpb)
          Length = 138

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 195 YYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
           Y  K  E N GN    LG++    K V+ D  KA +   +A   N  DG ++  Y     
Sbjct: 47  YLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAG 106

Query: 254 QA-HKDASRAESYFDQAVKSAPDD 276
           +   K+  +A   F++A +   +D
Sbjct: 107 KGVVKNEKQAVKTFEKACRLGSED 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,743,481
Number of Sequences: 62578
Number of extensions: 208630
Number of successful extensions: 1598
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1591
Number of HSP's gapped (non-prelim): 13
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)