Query 023753
Match_columns 277
No_of_seqs 344 out of 1942
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.6 4.2E-14 9.1E-19 118.5 12.6 95 180-276 31-125 (144)
2 TIGR02552 LcrH_SycD type III s 99.5 1.3E-12 2.8E-17 105.2 12.4 96 179-276 23-118 (135)
3 KOG0553 TPR repeat-containing 99.4 5E-13 1.1E-17 124.8 9.8 90 185-276 93-182 (304)
4 PRK10370 formate-dependent nit 99.4 2.9E-12 6.3E-17 113.1 13.4 96 180-276 80-177 (198)
5 PLN03088 SGT1, suppressor of 99.4 2.8E-12 6.1E-17 122.5 13.6 94 181-276 10-103 (356)
6 PRK11189 lipoprotein NlpI; Pro 99.4 4.1E-12 8.8E-17 117.9 13.7 94 181-276 72-165 (296)
7 PRK15363 pathogenicity island 99.3 1.3E-11 2.8E-16 106.4 12.0 98 174-273 34-133 (157)
8 PF13414 TPR_11: TPR repeat; P 99.3 8E-12 1.7E-16 90.5 8.5 68 205-274 1-69 (69)
9 cd00189 TPR Tetratricopeptide 99.3 2.9E-11 6.4E-16 85.6 11.0 93 181-275 8-100 (100)
10 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.5E-10 3.2E-15 89.9 12.9 94 181-276 10-109 (119)
11 PRK12370 invasion protein regu 99.3 3.8E-11 8.3E-16 120.3 12.0 87 188-276 319-405 (553)
12 PRK10370 formate-dependent nit 99.3 6E-11 1.3E-15 104.7 11.7 90 186-276 52-143 (198)
13 COG3063 PilF Tfp pilus assembl 99.3 3.8E-11 8.3E-16 109.1 10.5 88 183-272 45-132 (250)
14 COG3063 PilF Tfp pilus assembl 99.2 6.6E-11 1.4E-15 107.6 10.0 93 181-276 77-172 (250)
15 TIGR00990 3a0801s09 mitochondr 99.2 1.6E-10 3.5E-15 116.5 13.6 94 181-276 339-432 (615)
16 KOG4626 O-linked N-acetylgluco 99.2 6E-11 1.3E-15 119.8 9.4 95 180-276 395-489 (966)
17 TIGR00990 3a0801s09 mitochondr 99.2 2.5E-10 5.4E-15 115.2 13.7 95 180-276 372-466 (615)
18 PRK09782 bacteriophage N4 rece 99.2 2.2E-10 4.8E-15 122.4 13.6 94 181-276 617-710 (987)
19 PRK15359 type III secretion sy 99.2 1.1E-10 2.3E-15 97.8 8.6 82 190-276 10-91 (144)
20 TIGR02521 type_IV_pilW type IV 99.1 8.1E-10 1.7E-14 92.7 13.0 91 181-273 39-129 (234)
21 PF12895 Apc3: Anaphase-promot 99.1 9.6E-11 2.1E-15 88.7 6.7 81 186-269 2-84 (84)
22 KOG4626 O-linked N-acetylgluco 99.1 1.4E-10 3.1E-15 117.1 9.8 94 180-275 327-420 (966)
23 PF13432 TPR_16: Tetratricopep 99.1 1.9E-10 4.1E-15 82.6 7.3 63 212-276 2-64 (65)
24 TIGR02552 LcrH_SycD type III s 99.1 3.7E-10 8E-15 90.9 9.7 82 194-277 4-85 (135)
25 PRK02603 photosystem I assembl 99.1 9.2E-10 2E-14 93.9 12.5 94 181-276 43-153 (172)
26 PRK12370 invasion protein regu 99.1 6.6E-10 1.4E-14 111.5 13.4 95 180-276 345-440 (553)
27 KOG1126 DNA-binding cell divis 99.1 3.6E-11 7.7E-16 121.4 4.3 87 187-275 435-521 (638)
28 KOG1126 DNA-binding cell divis 99.1 1E-10 2.2E-15 118.2 6.6 90 186-277 468-557 (638)
29 PF13429 TPR_15: Tetratricopep 99.1 1.8E-10 3.8E-15 104.7 7.6 99 177-277 150-248 (280)
30 TIGR02521 type_IV_pilW type IV 99.1 1.9E-09 4.1E-14 90.4 13.0 94 181-276 73-168 (234)
31 CHL00033 ycf3 photosystem I as 99.1 2.1E-09 4.6E-14 91.0 12.9 94 181-276 43-153 (168)
32 KOG1125 TPR repeat-containing 99.1 2.2E-10 4.9E-15 114.4 7.3 93 181-275 438-530 (579)
33 PRK15174 Vi polysaccharide exp 99.0 2.8E-09 6.1E-14 109.3 13.9 96 179-276 252-351 (656)
34 PRK15179 Vi polysaccharide bio 99.0 2.3E-09 5E-14 111.0 13.2 94 181-276 94-187 (694)
35 PRK09782 bacteriophage N4 rece 99.0 2.4E-09 5.3E-14 114.6 13.3 88 186-276 589-676 (987)
36 PRK15174 Vi polysaccharide exp 99.0 4E-09 8.6E-14 108.2 13.6 98 177-276 288-385 (656)
37 PF13432 TPR_16: Tetratricopep 99.0 1.5E-09 3.2E-14 77.9 6.6 61 181-242 5-65 (65)
38 COG5010 TadD Flp pilus assembl 99.0 5.2E-09 1.1E-13 96.4 11.7 96 179-276 106-201 (257)
39 TIGR02917 PEP_TPR_lipo putativ 99.0 6.2E-09 1.3E-13 103.9 13.2 93 181-276 778-870 (899)
40 COG4235 Cytochrome c biogenesi 99.0 7.6E-09 1.6E-13 96.8 12.9 98 178-276 161-260 (287)
41 PRK10803 tol-pal system protei 99.0 1E-08 2.2E-13 94.8 13.3 91 184-276 154-250 (263)
42 PF13414 TPR_11: TPR repeat; P 99.0 1.9E-09 4.1E-14 77.9 6.6 60 179-239 9-69 (69)
43 TIGR03302 OM_YfiO outer membra 98.9 7.7E-09 1.7E-13 91.0 11.3 99 176-276 34-148 (235)
44 PRK11189 lipoprotein NlpI; Pro 98.9 1.3E-08 2.8E-13 94.5 13.3 95 179-276 104-199 (296)
45 KOG0547 Translocase of outer m 98.9 2.6E-09 5.7E-14 105.6 8.9 98 176-275 395-494 (606)
46 PRK10049 pgaA outer membrane p 98.9 1E-08 2.3E-13 106.6 13.7 96 179-276 365-460 (765)
47 KOG1155 Anaphase-promoting com 98.9 4E-09 8.7E-14 103.8 9.8 91 184-276 341-431 (559)
48 PF14559 TPR_19: Tetratricopep 98.9 3.2E-09 7E-14 76.4 6.3 66 185-251 3-68 (68)
49 PRK15179 Vi polysaccharide bio 98.9 1.2E-08 2.6E-13 105.8 12.9 99 174-274 121-219 (694)
50 PRK10049 pgaA outer membrane p 98.9 1.6E-08 3.5E-13 105.2 13.9 96 178-276 54-149 (765)
51 KOG0548 Molecular co-chaperone 98.9 6.2E-09 1.4E-13 103.5 10.2 92 183-276 368-459 (539)
52 PLN02789 farnesyltranstransfer 98.9 2.2E-08 4.8E-13 95.0 12.8 97 178-276 42-141 (320)
53 PF13371 TPR_9: Tetratricopept 98.9 1.3E-08 2.7E-13 74.2 8.6 70 180-250 2-71 (73)
54 TIGR02917 PEP_TPR_lipo putativ 98.9 2.4E-08 5.2E-13 99.6 13.3 96 179-276 131-226 (899)
55 PRK11447 cellulose synthase su 98.9 2.3E-08 4.9E-13 108.3 14.1 55 221-276 474-528 (1157)
56 PRK11788 tetratricopeptide rep 98.9 3.2E-08 7E-13 92.5 12.9 93 182-276 189-282 (389)
57 PRK11447 cellulose synthase su 98.9 2.2E-08 4.8E-13 108.4 13.1 99 176-276 606-704 (1157)
58 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.1E-08 2.4E-13 100.8 9.6 69 202-272 70-141 (453)
59 PLN02789 farnesyltranstransfer 98.8 4.2E-08 9.2E-13 93.1 12.4 94 181-276 79-175 (320)
60 KOG0543 FKBP-type peptidyl-pro 98.8 3.2E-08 7E-13 95.9 11.0 95 180-276 215-324 (397)
61 TIGR03302 OM_YfiO outer membra 98.8 5.3E-08 1.1E-12 85.7 11.6 95 180-276 77-199 (235)
62 KOG0547 Translocase of outer m 98.8 1.7E-08 3.7E-13 100.0 8.9 97 176-273 465-567 (606)
63 PRK11906 transcriptional regul 98.8 2.3E-08 5.1E-13 98.6 9.8 87 187-275 318-404 (458)
64 PRK11788 tetratricopeptide rep 98.8 6.8E-08 1.5E-12 90.3 12.4 96 178-276 219-315 (389)
65 PRK15331 chaperone protein Sic 98.8 3.8E-08 8.3E-13 85.5 9.7 98 173-272 35-134 (165)
66 KOG2076 RNA polymerase III tra 98.8 5.5E-08 1.2E-12 101.3 12.4 95 181-277 147-241 (895)
67 PRK10153 DNA-binding transcrip 98.8 5.5E-08 1.2E-12 97.8 11.7 102 173-276 338-486 (517)
68 cd05804 StaR_like StaR_like; a 98.8 6.8E-08 1.5E-12 89.4 11.4 92 181-274 122-217 (355)
69 PF13371 TPR_9: Tetratricopept 98.8 3.6E-08 7.8E-13 71.8 7.5 61 214-276 2-62 (73)
70 KOG1155 Anaphase-promoting com 98.7 5.7E-08 1.2E-12 95.8 10.8 100 173-274 347-463 (559)
71 PF06552 TOM20_plant: Plant sp 98.7 5.4E-08 1.2E-12 85.8 9.3 87 189-276 7-113 (186)
72 PRK15363 pathogenicity island 98.7 5.8E-08 1.3E-12 83.8 9.4 77 199-277 26-103 (157)
73 PF13429 TPR_15: Tetratricopep 98.7 9.8E-08 2.1E-12 86.7 9.9 98 177-276 114-213 (280)
74 PF14559 TPR_19: Tetratricopep 98.7 4.2E-08 9.1E-13 70.5 5.5 56 220-276 3-58 (68)
75 KOG0548 Molecular co-chaperone 98.6 1.1E-07 2.3E-12 94.8 9.3 94 181-276 10-103 (539)
76 PRK11906 transcriptional regul 98.6 1.8E-07 3.8E-12 92.5 10.7 103 173-276 252-371 (458)
77 KOG1173 Anaphase-promoting com 98.6 2.3E-07 5E-12 93.1 11.2 90 185-276 392-522 (611)
78 PF09976 TPR_21: Tetratricopep 98.6 3.4E-07 7.3E-12 76.1 10.3 89 179-270 54-145 (145)
79 COG5010 TadD Flp pilus assembl 98.6 3.6E-07 7.7E-12 84.3 11.0 97 178-276 71-167 (257)
80 KOG4162 Predicted calmodulin-b 98.6 2.9E-07 6.3E-12 94.9 11.1 95 181-277 692-788 (799)
81 cd00189 TPR Tetratricopeptide 98.6 3.3E-07 7.1E-12 64.5 8.3 66 209-276 2-67 (100)
82 KOG4648 Uncharacterized conser 98.6 1.4E-07 3E-12 90.8 7.0 93 182-276 106-198 (536)
83 COG4783 Putative Zn-dependent 98.6 7.5E-07 1.6E-11 88.1 12.3 89 186-276 319-407 (484)
84 PF12688 TPR_5: Tetratrico pep 98.5 2.2E-06 4.8E-11 70.8 13.1 89 181-271 9-103 (120)
85 PF13424 TPR_12: Tetratricopep 98.5 1.1E-07 2.4E-12 70.3 4.8 67 205-273 3-76 (78)
86 KOG1125 TPR repeat-containing 98.5 3E-07 6.5E-12 92.3 8.9 86 189-276 410-497 (579)
87 PRK14574 hmsH outer membrane p 98.5 8.1E-07 1.7E-11 93.9 12.1 98 177-276 37-135 (822)
88 KOG3060 Uncharacterized conser 98.5 8.8E-07 1.9E-11 82.0 10.8 89 186-276 133-224 (289)
89 CHL00033 ycf3 photosystem I as 98.5 8.4E-07 1.8E-11 75.1 9.5 88 187-276 13-105 (168)
90 TIGR00540 hemY_coli hemY prote 98.5 1E-06 2.2E-11 85.2 11.3 80 188-270 314-397 (409)
91 KOG3060 Uncharacterized conser 98.5 1.1E-06 2.4E-11 81.4 10.9 99 176-276 89-187 (289)
92 cd05804 StaR_like StaR_like; a 98.5 1E-06 2.2E-11 81.6 10.3 86 188-275 95-180 (355)
93 PLN03088 SGT1, suppressor of 98.5 1.1E-06 2.4E-11 84.1 10.9 74 180-254 43-116 (356)
94 KOG0553 TPR repeat-containing 98.4 6.1E-07 1.3E-11 84.3 8.2 78 181-260 123-200 (304)
95 COG4235 Cytochrome c biogenesi 98.4 1.3E-06 2.8E-11 82.0 10.3 89 188-277 137-227 (287)
96 TIGR00540 hemY_coli hemY prote 98.4 1.6E-06 3.5E-11 83.8 11.2 102 174-276 264-370 (409)
97 PRK02603 photosystem I assembl 98.4 1.1E-06 2.3E-11 74.9 8.5 79 196-276 22-105 (172)
98 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.3E-06 5.1E-11 66.1 9.7 68 207-276 2-72 (119)
99 PRK10747 putative protoheme IX 98.4 2.1E-06 4.5E-11 82.9 11.4 84 187-273 308-391 (398)
100 KOG0624 dsRNA-activated protei 98.4 8.1E-07 1.7E-11 85.6 8.2 96 179-276 44-139 (504)
101 COG4783 Putative Zn-dependent 98.4 3.5E-06 7.5E-11 83.5 12.2 89 181-271 348-436 (484)
102 KOG4234 TPR repeat-containing 98.4 3.1E-06 6.7E-11 76.6 10.4 92 183-276 105-201 (271)
103 COG1729 Uncharacterized protei 98.4 5.7E-06 1.2E-10 76.8 12.1 97 178-276 144-248 (262)
104 KOG1840 Kinesin light chain [C 98.3 2E-06 4.3E-11 86.5 9.7 100 172-273 198-313 (508)
105 PRK10747 putative protoheme IX 98.3 4E-06 8.6E-11 81.0 11.3 96 176-276 266-361 (398)
106 KOG0550 Molecular chaperone (D 98.3 1.4E-06 2.9E-11 85.3 7.9 92 182-275 258-353 (486)
107 PRK14574 hmsH outer membrane p 98.3 7.1E-06 1.5E-10 86.8 14.0 104 171-276 411-517 (822)
108 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 5.4E-06 1.2E-10 81.1 12.1 92 181-277 177-268 (395)
109 KOG2003 TPR repeat-containing 98.3 1E-06 2.2E-11 87.3 6.9 94 182-277 499-592 (840)
110 KOG1128 Uncharacterized conser 98.3 1.6E-06 3.6E-11 89.1 8.5 95 181-277 493-587 (777)
111 KOG4642 Chaperone-dependent E3 98.3 1.6E-06 3.5E-11 79.8 7.5 85 186-272 23-107 (284)
112 KOG2076 RNA polymerase III tra 98.3 9.9E-06 2.1E-10 84.9 12.5 95 179-275 179-273 (895)
113 KOG2002 TPR-containing nuclear 98.2 4.5E-06 9.8E-11 88.0 9.9 94 181-276 315-413 (1018)
114 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.1E-05 2.5E-10 78.8 12.0 87 181-269 208-294 (395)
115 PRK10866 outer membrane biogen 98.2 2.2E-05 4.7E-10 71.7 12.7 100 175-276 32-157 (243)
116 PF09976 TPR_21: Tetratricopep 98.2 3.2E-05 6.9E-10 64.2 12.3 89 178-268 14-110 (145)
117 KOG1840 Kinesin light chain [C 98.2 6.5E-06 1.4E-10 82.9 9.3 94 178-273 246-355 (508)
118 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 6.3E-06 1.4E-10 81.5 8.9 60 178-238 80-142 (453)
119 KOG0543 FKBP-type peptidyl-pro 98.2 1.1E-05 2.4E-10 78.5 10.3 87 187-274 271-357 (397)
120 PF13512 TPR_18: Tetratricopep 98.2 2.5E-05 5.4E-10 66.6 10.9 99 176-276 11-132 (142)
121 PF13428 TPR_14: Tetratricopep 98.2 4.9E-06 1.1E-10 56.2 5.3 43 207-250 1-43 (44)
122 PF13431 TPR_17: Tetratricopep 98.2 2E-06 4.4E-11 55.7 3.3 32 196-228 2-33 (34)
123 PF13431 TPR_17: Tetratricopep 98.2 2.1E-06 4.6E-11 55.6 3.3 34 230-264 1-34 (34)
124 KOG1174 Anaphase-promoting com 98.1 1.2E-05 2.6E-10 79.0 9.8 84 190-276 421-504 (564)
125 PRK14720 transcript cleavage f 98.1 1.4E-05 3E-10 85.1 10.5 79 191-272 100-178 (906)
126 PRK14720 transcript cleavage f 98.1 1.3E-05 2.9E-10 85.2 10.3 82 179-277 122-203 (906)
127 KOG4555 TPR repeat-containing 98.1 3.4E-05 7.3E-10 65.9 10.6 88 183-272 53-144 (175)
128 COG2956 Predicted N-acetylgluc 98.1 2.2E-05 4.7E-10 75.1 10.1 100 175-276 143-247 (389)
129 KOG1129 TPR repeat-containing 98.1 5.2E-06 1.1E-10 79.7 5.9 91 181-273 298-388 (478)
130 KOG2002 TPR-containing nuclear 98.1 1.5E-05 3.3E-10 84.2 9.8 88 187-276 250-340 (1018)
131 KOG1173 Anaphase-promoting com 98.1 2.2E-05 4.8E-10 79.2 10.5 90 185-276 324-413 (611)
132 KOG1127 TPR repeat-containing 98.1 1.5E-05 3.3E-10 84.5 9.1 91 186-276 15-107 (1238)
133 PF13525 YfiO: Outer membrane 98.0 7.7E-05 1.7E-09 65.7 11.8 92 184-276 16-123 (203)
134 PRK10803 tol-pal system protei 98.0 5.7E-05 1.2E-09 70.0 10.8 70 206-276 141-213 (263)
135 COG2956 Predicted N-acetylgluc 98.0 4.7E-05 1E-09 72.9 10.3 90 184-275 191-281 (389)
136 PF07719 TPR_2: Tetratricopept 98.0 1.9E-05 4.1E-10 49.3 5.2 33 243-276 2-34 (34)
137 PRK15331 chaperone protein Sic 98.0 3.3E-05 7.2E-10 67.3 8.4 75 201-277 31-105 (165)
138 PF13424 TPR_12: Tetratricopep 98.0 1.5E-05 3.2E-10 58.9 5.0 59 178-237 10-75 (78)
139 KOG1174 Anaphase-promoting com 97.9 4.6E-05 9.9E-10 75.0 9.4 98 177-276 236-367 (564)
140 PF05843 Suf: Suppressor of fo 97.9 3.4E-05 7.3E-10 71.6 8.1 94 180-274 8-101 (280)
141 COG4785 NlpI Lipoprotein NlpI, 97.9 2.1E-05 4.6E-10 72.0 6.4 94 182-277 74-167 (297)
142 PF12688 TPR_5: Tetratrico pep 97.9 7.6E-05 1.7E-09 61.6 9.0 68 207-276 1-71 (120)
143 KOG0376 Serine-threonine phosp 97.9 7.8E-06 1.7E-10 81.0 3.7 89 186-276 17-105 (476)
144 KOG1156 N-terminal acetyltrans 97.9 3.4E-05 7.5E-10 78.8 8.2 88 186-275 54-141 (700)
145 PF00515 TPR_1: Tetratricopept 97.9 2.5E-05 5.4E-10 49.2 4.5 32 243-275 2-33 (34)
146 PF04733 Coatomer_E: Coatomer 97.9 6.2E-05 1.3E-09 70.6 9.0 93 181-275 139-233 (290)
147 PF07719 TPR_2: Tetratricopept 97.9 4.2E-05 9.2E-10 47.7 5.2 34 207-241 1-34 (34)
148 KOG4162 Predicted calmodulin-b 97.8 9.2E-05 2E-09 76.9 10.2 86 189-276 460-546 (799)
149 KOG1156 N-terminal acetyltrans 97.8 6.3E-05 1.4E-09 76.9 8.8 93 179-273 81-173 (700)
150 PF00515 TPR_1: Tetratricopept 97.8 3.5E-05 7.6E-10 48.6 4.5 34 207-241 1-34 (34)
151 PF12569 NARP1: NMDA receptor- 97.8 0.0002 4.2E-09 72.5 11.8 90 180-271 201-290 (517)
152 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00048 1E-08 54.0 11.6 92 182-275 139-234 (291)
153 PRK10866 outer membrane biogen 97.8 0.0002 4.4E-09 65.3 10.4 70 205-276 30-102 (243)
154 KOG1127 TPR repeat-containing 97.8 4.7E-05 1E-09 80.9 6.7 89 188-277 507-630 (1238)
155 KOG0545 Aryl-hydrocarbon recep 97.7 0.00018 3.9E-09 66.9 9.5 89 185-275 190-296 (329)
156 KOG1129 TPR repeat-containing 97.7 7.3E-05 1.6E-09 72.0 6.3 93 181-276 231-323 (478)
157 KOG0550 Molecular chaperone (D 97.7 9.9E-05 2.1E-09 72.5 7.2 94 181-276 177-282 (486)
158 PF12895 Apc3: Anaphase-promot 97.7 3.2E-05 6.9E-10 58.3 3.1 53 221-275 2-56 (84)
159 PF03704 BTAD: Bacterial trans 97.6 0.00084 1.8E-08 55.2 11.4 85 185-271 18-124 (146)
160 PRK10153 DNA-binding transcrip 97.6 0.00018 3.9E-09 72.7 8.8 60 183-244 430-489 (517)
161 PF06552 TOM20_plant: Plant sp 97.6 0.00022 4.7E-09 63.2 7.4 63 187-250 49-122 (186)
162 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0015 3.3E-08 51.1 11.5 91 183-275 177-268 (291)
163 KOG1128 Uncharacterized conser 97.6 0.00017 3.7E-09 74.6 7.3 87 185-273 531-617 (777)
164 PF04733 Coatomer_E: Coatomer 97.6 0.0002 4.2E-09 67.2 7.0 89 186-276 180-269 (290)
165 PF05843 Suf: Suppressor of fo 97.5 0.00085 1.8E-08 62.3 10.7 96 179-276 41-140 (280)
166 PF13428 TPR_14: Tetratricopep 97.5 0.00016 3.4E-09 48.7 4.3 38 178-215 6-43 (44)
167 KOG2003 TPR repeat-containing 97.5 0.00047 1E-08 68.8 9.0 77 181-259 532-608 (840)
168 COG4700 Uncharacterized protei 97.5 0.0012 2.5E-08 59.6 10.3 93 181-275 97-192 (251)
169 KOG1308 Hsp70-interacting prot 97.4 4.8E-05 1E-09 73.1 1.2 107 167-275 99-214 (377)
170 PF12569 NARP1: NMDA receptor- 97.4 0.00066 1.4E-08 68.7 9.3 67 208-276 195-261 (517)
171 PF13525 YfiO: Outer membrane 97.4 0.0014 2.9E-08 57.8 10.2 69 206-276 4-75 (203)
172 PF13181 TPR_8: Tetratricopept 97.4 0.00034 7.4E-09 43.7 4.3 30 244-274 3-32 (34)
173 KOG0495 HAT repeat protein [RN 97.4 0.0011 2.3E-08 68.6 9.8 94 181-276 659-752 (913)
174 PF14938 SNAP: Soluble NSF att 97.4 0.00096 2.1E-08 61.6 8.8 96 178-275 119-228 (282)
175 PF14938 SNAP: Soluble NSF att 97.3 0.00063 1.4E-08 62.8 7.5 83 188-272 89-184 (282)
176 COG3071 HemY Uncharacterized e 97.3 0.0021 4.4E-08 62.8 11.2 83 187-272 308-390 (400)
177 KOG0551 Hsp90 co-chaperone CNS 97.3 0.001 2.3E-08 64.0 8.5 90 182-273 90-183 (390)
178 KOG0624 dsRNA-activated protei 97.3 0.0022 4.8E-08 62.3 10.7 89 186-276 168-256 (504)
179 PF13181 TPR_8: Tetratricopept 97.3 0.00055 1.2E-08 42.8 4.3 33 208-241 2-34 (34)
180 PF13512 TPR_18: Tetratricopep 97.2 0.0034 7.3E-08 53.6 10.1 68 207-276 10-80 (142)
181 KOG3824 Huntingtin interacting 97.2 0.00063 1.4E-08 65.3 5.5 65 185-250 128-192 (472)
182 KOG4507 Uncharacterized conser 97.2 0.00092 2E-08 68.4 6.9 90 185-276 619-709 (886)
183 KOG2396 HAT (Half-A-TPR) repea 97.1 0.0042 9E-08 62.5 10.8 86 190-276 88-173 (568)
184 KOG0495 HAT repeat protein [RN 97.1 0.0029 6.3E-08 65.5 9.9 95 180-276 692-786 (913)
185 COG3071 HemY Uncharacterized e 97.0 0.0066 1.4E-07 59.4 10.6 94 178-276 268-361 (400)
186 KOG4648 Uncharacterized conser 96.9 0.0017 3.7E-08 63.2 6.2 62 210-273 100-161 (536)
187 KOG3824 Huntingtin interacting 96.9 0.0023 5.1E-08 61.4 6.9 56 220-276 128-183 (472)
188 KOG2796 Uncharacterized conser 96.9 0.0034 7.3E-08 59.2 7.5 94 181-276 220-319 (366)
189 PLN03081 pentatricopeptide (PP 96.9 0.0049 1.1E-07 63.5 9.5 63 208-272 495-557 (697)
190 PF04184 ST7: ST7 protein; In 96.9 0.0079 1.7E-07 60.6 10.5 85 187-275 182-291 (539)
191 COG4105 ComL DNA uptake lipopr 96.9 0.012 2.6E-07 54.6 10.9 102 174-276 33-149 (254)
192 KOG4555 TPR repeat-containing 96.8 0.0067 1.4E-07 52.1 8.3 62 211-274 47-108 (175)
193 smart00028 TPR Tetratricopepti 96.8 0.002 4.3E-08 37.0 3.7 31 244-275 3-33 (34)
194 KOG1070 rRNA processing protei 96.8 0.0079 1.7E-07 66.4 10.7 95 179-275 1536-1632(1710)
195 PLN03077 Protein ECB2; Provisi 96.8 0.011 2.5E-07 62.2 11.7 85 183-271 635-719 (857)
196 PF10300 DUF3808: Protein of u 96.8 0.0075 1.6E-07 60.2 9.8 85 187-273 247-335 (468)
197 COG1729 Uncharacterized protei 96.8 0.0077 1.7E-07 56.2 9.1 65 210-276 144-211 (262)
198 PF13174 TPR_6: Tetratricopept 96.8 0.0029 6.3E-08 38.8 4.3 31 244-275 2-32 (33)
199 KOG2053 Mitochondrial inherita 96.8 0.0069 1.5E-07 64.2 9.4 87 187-275 23-109 (932)
200 PF14561 TPR_20: Tetratricopep 96.7 0.016 3.4E-07 45.5 9.1 78 191-270 6-85 (90)
201 COG3118 Thioredoxin domain-con 96.7 0.022 4.9E-07 54.0 11.6 88 185-274 146-267 (304)
202 PRK04841 transcriptional regul 96.7 0.018 3.8E-07 60.4 11.9 90 181-272 460-560 (903)
203 KOG1915 Cell cycle control pro 96.6 0.011 2.4E-07 59.5 9.4 96 178-275 78-173 (677)
204 KOG1310 WD40 repeat protein [G 96.6 0.0057 1.2E-07 62.1 7.1 87 189-276 390-478 (758)
205 PF13176 TPR_7: Tetratricopept 96.5 0.0044 9.5E-08 40.0 4.1 25 210-235 2-26 (36)
206 smart00028 TPR Tetratricopepti 96.5 0.0044 9.4E-08 35.5 3.7 33 208-241 2-34 (34)
207 PF10300 DUF3808: Protein of u 96.5 0.018 3.9E-07 57.5 10.0 91 180-272 274-376 (468)
208 KOG0530 Protein farnesyltransf 96.5 0.03 6.6E-07 52.7 10.8 100 176-276 46-146 (318)
209 PRK10941 hypothetical protein; 96.4 0.02 4.3E-07 53.6 9.4 66 210-277 184-249 (269)
210 PLN03218 maturation of RBCL 1; 96.4 0.034 7.4E-07 60.9 12.6 87 183-272 552-643 (1060)
211 PLN03218 maturation of RBCL 1; 96.4 0.036 7.9E-07 60.7 12.8 89 181-273 515-609 (1060)
212 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.016 3.4E-07 41.5 6.6 42 209-251 3-44 (53)
213 PF03704 BTAD: Bacterial trans 96.4 0.02 4.4E-07 47.0 8.1 52 184-236 73-124 (146)
214 PF13176 TPR_7: Tetratricopept 96.4 0.0069 1.5E-07 39.1 4.2 28 244-272 1-28 (36)
215 KOG2610 Uncharacterized conser 96.3 0.018 4E-07 56.0 8.7 81 186-268 150-234 (491)
216 PF14561 TPR_20: Tetratricopep 96.3 0.013 2.8E-07 45.9 6.4 49 227-276 7-55 (90)
217 KOG4340 Uncharacterized conser 96.3 0.017 3.7E-07 55.5 8.2 84 184-269 21-104 (459)
218 COG4785 NlpI Lipoprotein NlpI, 96.3 0.014 3.1E-07 53.8 7.4 94 178-275 104-199 (297)
219 KOG3081 Vesicle coat complex C 96.3 0.052 1.1E-06 51.1 11.1 84 189-274 189-273 (299)
220 COG4976 Predicted methyltransf 96.3 0.0052 1.1E-07 56.9 4.4 63 180-243 2-64 (287)
221 KOG4234 TPR repeat-containing 96.2 0.017 3.6E-07 52.8 7.4 66 185-251 146-211 (271)
222 PRK04841 transcriptional regul 96.2 0.045 9.7E-07 57.4 11.7 92 180-273 538-642 (903)
223 PLN03081 pentatricopeptide (PP 96.2 0.021 4.6E-07 58.8 9.1 87 181-272 267-354 (697)
224 PF13174 TPR_6: Tetratricopept 96.2 0.011 2.4E-07 36.2 4.3 33 208-241 1-33 (33)
225 COG4976 Predicted methyltransf 96.2 0.0071 1.5E-07 56.0 4.7 60 215-276 3-62 (287)
226 KOG2610 Uncharacterized conser 96.1 0.031 6.6E-07 54.5 9.0 82 187-270 189-274 (491)
227 PF13281 DUF4071: Domain of un 96.1 0.038 8.2E-07 54.1 9.8 92 184-276 152-259 (374)
228 KOG2376 Signal recognition par 96.1 0.039 8.5E-07 56.6 10.1 100 175-276 112-257 (652)
229 COG4700 Uncharacterized protei 96.1 0.061 1.3E-06 48.7 10.1 88 179-269 130-219 (251)
230 KOG4642 Chaperone-dependent E3 96.1 0.0055 1.2E-07 56.9 3.5 61 214-276 17-77 (284)
231 PF09986 DUF2225: Uncharacteri 96.0 0.075 1.6E-06 47.9 10.4 84 187-272 91-194 (214)
232 COG4105 ComL DNA uptake lipopr 95.9 0.053 1.2E-06 50.4 9.4 68 207-276 34-104 (254)
233 KOG1130 Predicted G-alpha GTPa 95.9 0.011 2.4E-07 58.8 5.1 86 186-273 208-305 (639)
234 KOG2376 Signal recognition par 95.9 0.046 1E-06 56.1 9.7 91 181-276 20-143 (652)
235 KOG3785 Uncharacterized conser 95.9 0.024 5.3E-07 55.5 7.3 83 185-269 34-117 (557)
236 KOG1915 Cell cycle control pro 95.9 0.043 9.4E-07 55.4 9.2 93 181-275 445-539 (677)
237 COG2976 Uncharacterized protei 95.9 0.054 1.2E-06 48.8 8.9 88 185-275 101-191 (207)
238 PF08424 NRDE-2: NRDE-2, neces 95.9 0.11 2.4E-06 49.2 11.7 80 191-271 49-130 (321)
239 PF09613 HrpB1_HrpK: Bacterial 95.8 0.17 3.6E-06 44.1 11.5 73 186-260 23-95 (160)
240 PLN03077 Protein ECB2; Provisi 95.8 0.071 1.5E-06 56.3 11.0 80 186-268 567-650 (857)
241 PRK10941 hypothetical protein; 95.8 0.072 1.6E-06 49.8 9.8 72 179-251 187-258 (269)
242 KOG3785 Uncharacterized conser 95.8 0.053 1.1E-06 53.2 9.1 95 178-275 62-183 (557)
243 KOG1586 Protein required for f 95.8 0.06 1.3E-06 50.1 9.0 98 173-272 32-143 (288)
244 KOG1070 rRNA processing protei 95.6 0.082 1.8E-06 58.8 10.7 85 187-273 1578-1664(1710)
245 PF10373 EST1_DNA_bind: Est1 D 95.6 0.042 9.1E-07 49.3 7.3 62 192-254 1-62 (278)
246 PF14853 Fis1_TPR_C: Fis1 C-te 95.6 0.03 6.6E-07 40.0 4.9 33 243-276 2-34 (53)
247 KOG3081 Vesicle coat complex C 95.5 0.074 1.6E-06 50.1 8.7 94 182-276 146-240 (299)
248 PF13374 TPR_10: Tetratricopep 95.5 0.036 7.9E-07 35.3 4.7 29 243-272 3-31 (42)
249 KOG3364 Membrane protein invol 95.4 0.12 2.7E-06 44.2 9.0 84 192-276 17-104 (149)
250 PF13281 DUF4071: Domain of un 95.4 0.088 1.9E-06 51.5 9.2 87 188-277 241-339 (374)
251 PF04781 DUF627: Protein of un 95.4 0.13 2.8E-06 42.3 8.7 89 183-272 6-107 (111)
252 KOG4340 Uncharacterized conser 95.3 0.044 9.4E-07 52.8 6.5 71 200-272 135-207 (459)
253 KOG3617 WD40 and TPR repeat-co 95.3 0.13 2.7E-06 55.1 10.2 93 178-272 863-996 (1416)
254 COG3914 Spy Predicted O-linked 95.3 0.12 2.5E-06 53.2 9.7 91 185-276 79-175 (620)
255 COG0790 FOG: TPR repeat, SEL1 95.2 0.27 5.9E-06 44.7 11.4 83 187-273 127-221 (292)
256 PF13374 TPR_10: Tetratricopep 95.2 0.051 1.1E-06 34.6 4.7 31 207-238 2-32 (42)
257 PF11207 DUF2989: Protein of u 95.1 0.2 4.4E-06 45.2 10.0 87 172-264 108-199 (203)
258 PF04184 ST7: ST7 protein; In 95.1 0.28 6E-06 49.8 11.8 91 185-276 271-379 (539)
259 KOG1585 Protein required for f 95.0 0.3 6.5E-06 45.9 10.9 95 176-273 32-140 (308)
260 KOG1941 Acetylcholine receptor 94.9 0.097 2.1E-06 51.5 7.8 89 182-272 171-275 (518)
261 COG5191 Uncharacterized conser 94.9 0.031 6.6E-07 53.9 4.3 62 187-248 121-182 (435)
262 KOG1130 Predicted G-alpha GTPa 94.9 0.093 2E-06 52.4 7.6 85 186-272 248-344 (639)
263 KOG1586 Protein required for f 94.8 0.15 3.2E-06 47.6 8.4 88 187-275 87-186 (288)
264 PF02259 FAT: FAT domain; Int 94.8 0.42 9E-06 44.0 11.4 98 177-276 150-291 (352)
265 KOG2796 Uncharacterized conser 94.8 0.17 3.8E-06 48.0 8.8 89 186-276 190-285 (366)
266 KOG2396 HAT (Half-A-TPR) repea 94.6 0.4 8.7E-06 48.7 11.3 67 185-251 117-183 (568)
267 KOG2047 mRNA splicing factor [ 94.4 0.26 5.7E-06 51.4 9.7 97 178-275 482-582 (835)
268 PF04910 Tcf25: Transcriptiona 94.2 0.37 8.1E-06 46.7 10.0 94 181-275 111-225 (360)
269 PF02259 FAT: FAT domain; Int 94.2 0.62 1.4E-05 42.9 11.1 99 176-275 187-341 (352)
270 KOG1550 Extracellular protein 94.2 0.17 3.7E-06 51.5 7.9 85 186-272 262-357 (552)
271 PF12862 Apc5: Anaphase-promot 94.1 0.46 1E-05 36.9 8.6 54 187-241 12-74 (94)
272 KOG0376 Serine-threonine phosp 94.0 0.048 1E-06 54.6 3.5 61 214-276 11-71 (476)
273 PF08424 NRDE-2: NRDE-2, neces 93.9 1 2.2E-05 42.7 12.2 52 224-276 47-98 (321)
274 KOG1941 Acetylcholine receptor 93.8 0.14 3E-06 50.5 6.2 87 185-273 134-236 (518)
275 TIGR02561 HrpB1_HrpK type III 93.2 1.1 2.5E-05 38.8 10.1 73 186-260 23-95 (153)
276 KOG4507 Uncharacterized conser 93.2 0.095 2.1E-06 54.2 4.0 90 184-275 224-315 (886)
277 KOG0529 Protein geranylgeranyl 93.0 0.6 1.3E-05 46.3 9.2 89 188-277 90-183 (421)
278 KOG2471 TPR repeat-containing 93.0 0.18 3.9E-06 51.3 5.6 90 181-272 248-364 (696)
279 PF04910 Tcf25: Transcriptiona 93.0 0.99 2.2E-05 43.8 10.6 77 198-276 31-137 (360)
280 COG0790 FOG: TPR repeat, SEL1 92.9 1 2.2E-05 41.0 10.2 80 189-274 171-268 (292)
281 PF07079 DUF1347: Protein of u 92.7 1.4 3.1E-05 44.5 11.4 50 216-268 471-520 (549)
282 KOG0551 Hsp90 co-chaperone CNS 92.7 0.43 9.2E-06 46.4 7.4 67 208-276 82-152 (390)
283 PF07720 TPR_3: Tetratricopept 92.6 0.41 8.8E-06 31.5 5.1 32 244-276 3-36 (36)
284 COG3898 Uncharacterized membra 92.5 1.3 2.7E-05 44.3 10.6 88 181-271 128-216 (531)
285 COG2912 Uncharacterized conser 92.4 0.54 1.2E-05 44.2 7.6 56 220-276 193-248 (269)
286 KOG2300 Uncharacterized conser 92.4 1 2.2E-05 45.9 9.9 90 187-276 23-122 (629)
287 KOG1550 Extracellular protein 92.3 1 2.3E-05 45.8 10.2 82 188-273 308-394 (552)
288 KOG2053 Mitochondrial inherita 92.1 1.1 2.4E-05 48.1 10.3 72 186-260 56-127 (932)
289 KOG1258 mRNA processing protei 92.0 1.6 3.4E-05 45.0 11.0 96 178-275 302-398 (577)
290 KOG2422 Uncharacterized conser 91.8 2.2 4.8E-05 44.2 11.6 97 176-274 343-450 (665)
291 COG3629 DnrI DNA-binding trans 91.7 0.98 2.1E-05 42.7 8.5 80 189-272 137-216 (280)
292 KOG1308 Hsp70-interacting prot 91.6 0.034 7.4E-07 53.9 -1.3 56 220-276 126-181 (377)
293 smart00386 HAT HAT (Half-A-TPR 91.4 0.5 1.1E-05 28.1 4.3 29 188-216 2-30 (33)
294 COG5191 Uncharacterized conser 91.1 0.21 4.5E-06 48.4 3.5 84 192-276 92-175 (435)
295 PF07720 TPR_3: Tetratricopept 91.0 0.78 1.7E-05 30.1 5.1 33 208-241 2-36 (36)
296 PF12862 Apc5: Anaphase-promot 90.7 1.4 3E-05 34.2 7.3 53 220-273 10-71 (94)
297 PF07721 TPR_4: Tetratricopept 90.5 0.34 7.3E-06 29.1 2.8 23 244-267 3-25 (26)
298 KOG3364 Membrane protein invol 90.4 0.95 2.1E-05 38.9 6.5 65 187-252 49-115 (149)
299 smart00386 HAT HAT (Half-A-TPR 90.4 0.85 1.8E-05 27.0 4.7 31 222-252 1-31 (33)
300 PF10602 RPN7: 26S proteasome 90.4 3.3 7.1E-05 36.1 10.1 89 180-270 43-140 (177)
301 PF12968 DUF3856: Domain of Un 90.4 2 4.3E-05 36.5 8.2 85 186-272 22-129 (144)
302 KOG1914 mRNA cleavage and poly 90.4 1.5 3.2E-05 45.2 8.8 72 197-271 10-81 (656)
303 KOG3617 WD40 and TPR repeat-co 90.2 2.1 4.5E-05 46.3 10.0 61 176-237 915-996 (1416)
304 KOG2047 mRNA splicing factor [ 90.2 1.4 3.1E-05 46.2 8.8 92 181-274 433-542 (835)
305 KOG2471 TPR repeat-containing 90.0 1 2.3E-05 46.0 7.4 68 186-254 296-381 (696)
306 COG4649 Uncharacterized protei 89.9 7.5 0.00016 35.1 11.9 84 186-271 71-195 (221)
307 PF08631 SPO22: Meiosis protei 89.8 4.1 8.9E-05 37.6 10.8 89 185-275 5-119 (278)
308 KOG4814 Uncharacterized conser 89.3 2.3 5E-05 44.7 9.3 83 187-271 368-456 (872)
309 PRK13184 pknD serine/threonine 89.1 2 4.3E-05 46.9 9.3 92 183-276 485-585 (932)
310 COG2912 Uncharacterized conser 88.9 1.8 4E-05 40.7 7.7 68 183-251 191-258 (269)
311 PF09613 HrpB1_HrpK: Bacterial 88.8 3.2 6.9E-05 36.2 8.7 56 220-276 22-77 (160)
312 KOG0530 Protein farnesyltransf 88.6 3.6 7.8E-05 39.1 9.4 98 176-275 79-179 (318)
313 PF10345 Cohesin_load: Cohesin 88.4 4.6 9.9E-05 41.5 11.0 82 190-273 38-129 (608)
314 KOG1914 mRNA cleavage and poly 88.3 5.1 0.00011 41.4 10.9 89 181-272 374-464 (656)
315 COG2976 Uncharacterized protei 88.0 5.7 0.00012 36.1 9.9 77 191-269 70-152 (207)
316 COG3914 Spy Predicted O-linked 88.0 2.3 4.9E-05 44.1 8.3 89 187-276 45-135 (620)
317 KOG0545 Aryl-hydrocarbon recep 87.9 3.1 6.8E-05 39.3 8.4 68 178-246 235-302 (329)
318 smart00101 14_3_3 14-3-3 homol 87.3 3.2 7E-05 38.4 8.3 60 178-237 127-200 (244)
319 KOG2300 Uncharacterized conser 87.3 5.2 0.00011 40.9 10.2 96 173-273 366-475 (629)
320 PF00244 14-3-3: 14-3-3 protei 87.1 2.5 5.3E-05 38.7 7.3 60 178-237 125-198 (236)
321 PF07721 TPR_4: Tetratricopept 86.9 0.81 1.8E-05 27.4 2.8 25 208-233 2-26 (26)
322 PF10602 RPN7: 26S proteasome 86.8 4.2 9.2E-05 35.4 8.4 63 208-272 37-102 (177)
323 PF11846 DUF3366: Domain of un 86.5 3.1 6.8E-05 36.0 7.4 50 224-275 127-176 (193)
324 KOG3807 Predicted membrane pro 86.4 7 0.00015 38.6 10.2 91 179-274 191-306 (556)
325 PF10516 SHNi-TPR: SHNi-TPR; 86.1 1.3 2.8E-05 29.5 3.7 29 243-272 2-30 (38)
326 COG3629 DnrI DNA-binding trans 86.1 4.7 0.0001 38.1 8.8 53 184-237 164-216 (280)
327 KOG1258 mRNA processing protei 85.6 6.7 0.00014 40.6 10.1 87 189-276 61-147 (577)
328 PLN03138 Protein TOC75; Provis 85.5 0.63 1.4E-05 49.7 2.9 15 192-206 166-180 (796)
329 PF09986 DUF2225: Uncharacteri 85.4 4.4 9.6E-05 36.5 8.0 65 189-254 141-212 (214)
330 COG3898 Uncharacterized membra 85.3 8.5 0.00018 38.6 10.3 88 186-275 167-295 (531)
331 PF10579 Rapsyn_N: Rapsyn N-te 85.3 4.9 0.00011 31.3 7.0 52 220-272 18-72 (80)
332 KOG0546 HSP90 co-chaperone CPR 84.9 0.59 1.3E-05 45.6 2.2 90 185-276 234-342 (372)
333 PF00244 14-3-3: 14-3-3 protei 83.6 8.5 0.00019 35.1 9.1 48 225-272 143-198 (236)
334 COG3118 Thioredoxin domain-con 83.3 9.8 0.00021 36.4 9.6 73 195-269 224-298 (304)
335 COG3947 Response regulator con 83.2 4.8 0.0001 38.8 7.4 58 211-270 283-340 (361)
336 PLN03138 Protein TOC75; Provis 82.8 1 2.2E-05 48.2 3.0 18 225-242 164-181 (796)
337 KOG0529 Protein geranylgeranyl 81.8 18 0.0004 36.1 11.1 87 190-277 46-145 (421)
338 PF11846 DUF3366: Domain of un 80.7 8.3 0.00018 33.4 7.6 51 189-241 127-177 (193)
339 COG2909 MalT ATP-dependent tra 80.1 18 0.00038 39.3 11.0 93 178-272 420-526 (894)
340 PF10345 Cohesin_load: Cohesin 79.9 20 0.00044 36.8 11.3 90 181-273 68-169 (608)
341 COG4455 ImpE Protein of avirul 79.7 5.2 0.00011 37.2 6.2 58 185-243 13-70 (273)
342 KOG4814 Uncharacterized conser 79.7 5.6 0.00012 42.0 7.0 61 214-276 361-427 (872)
343 PF04781 DUF627: Protein of un 79.5 6.4 0.00014 32.4 6.1 61 214-275 3-76 (111)
344 COG4455 ImpE Protein of avirul 79.4 7.9 0.00017 36.1 7.2 32 177-208 39-70 (273)
345 PHA02537 M terminase endonucle 78.8 3 6.5E-05 38.4 4.4 96 178-275 88-210 (230)
346 KOG1585 Protein required for f 78.1 18 0.0004 34.3 9.3 59 212-272 36-100 (308)
347 KOG0921 Dosage compensation co 77.5 2 4.3E-05 46.8 3.1 6 41-46 1047-1052(1282)
348 COG5107 RNA14 Pre-mRNA 3'-end 77.5 12 0.00025 38.4 8.3 84 186-272 410-495 (660)
349 COG3947 Response regulator con 77.2 6.9 0.00015 37.8 6.3 53 182-235 288-340 (361)
350 PF08631 SPO22: Meiosis protei 76.6 9.1 0.0002 35.3 7.0 52 220-272 5-65 (278)
351 KOG4014 Uncharacterized conser 75.6 21 0.00046 32.6 8.7 82 187-272 126-233 (248)
352 KOG4014 Uncharacterized conser 75.4 17 0.00036 33.2 8.0 81 187-273 87-198 (248)
353 PF07079 DUF1347: Protein of u 75.0 11 0.00023 38.5 7.3 52 181-234 470-521 (549)
354 KOG3783 Uncharacterized conser 73.9 22 0.00047 36.7 9.3 69 203-273 444-521 (546)
355 PF10579 Rapsyn_N: Rapsyn N-te 73.5 16 0.00035 28.4 6.5 52 185-237 18-72 (80)
356 smart00671 SEL1 Sel1-like repe 73.1 5.8 0.00013 24.2 3.4 14 258-271 20-33 (36)
357 PF04053 Coatomer_WDAD: Coatom 72.5 27 0.00058 35.0 9.6 85 183-270 271-374 (443)
358 KOG2581 26S proteasome regulat 72.3 18 0.00038 36.4 8.0 65 210-276 212-280 (493)
359 TIGR02561 HrpB1_HrpK type III 71.8 22 0.00048 30.9 7.6 54 220-274 22-75 (153)
360 COG4941 Predicted RNA polymera 71.7 15 0.00032 36.2 7.2 86 187-275 310-397 (415)
361 TIGR03504 FimV_Cterm FimV C-te 71.7 7.2 0.00016 26.7 3.8 25 246-271 3-27 (44)
362 cd02680 MIT_calpain7_2 MIT: do 71.6 8.2 0.00018 29.5 4.4 18 220-237 18-35 (75)
363 cd02681 MIT_calpain7_1 MIT: do 71.5 8.2 0.00018 29.5 4.4 25 212-237 11-35 (76)
364 PF09670 Cas_Cas02710: CRISPR- 70.5 40 0.00086 32.9 10.1 87 185-272 143-270 (379)
365 KOG1310 WD40 repeat protein [G 70.2 6.9 0.00015 40.5 4.8 56 187-243 425-480 (758)
366 PF11817 Foie-gras_1: Foie gra 69.6 32 0.00069 31.2 8.7 79 189-269 154-244 (247)
367 PF14863 Alkyl_sulf_dimr: Alky 69.6 17 0.00038 30.8 6.5 60 196-258 60-119 (141)
368 PF10516 SHNi-TPR: SHNi-TPR; 69.4 8.8 0.00019 25.5 3.7 30 208-238 2-31 (38)
369 COG5107 RNA14 Pre-mRNA 3'-end 69.1 51 0.0011 33.9 10.5 89 185-275 444-534 (660)
370 PF09205 DUF1955: Domain of un 69.0 43 0.00094 29.0 8.7 80 187-272 70-149 (161)
371 TIGR02996 rpt_mate_G_obs repea 69.0 10 0.00022 26.1 4.0 32 230-262 4-35 (42)
372 KOG0546 HSP90 co-chaperone CPR 68.8 6.7 0.00014 38.5 4.2 64 190-254 292-355 (372)
373 PF08238 Sel1: Sel1 repeat; I 68.6 12 0.00026 23.3 4.2 13 259-271 24-36 (39)
374 smart00299 CLH Clathrin heavy 68.0 47 0.001 26.7 8.6 48 183-232 17-64 (140)
375 KOG4279 Serine/threonine prote 67.9 7.7 0.00017 41.7 4.7 89 187-277 301-400 (1226)
376 PF15015 NYD-SP12_N: Spermatog 67.9 18 0.00039 36.6 7.0 83 186-270 189-289 (569)
377 PF04190 DUF410: Protein of un 67.7 52 0.0011 30.3 9.8 79 193-272 70-170 (260)
378 PRK15490 Vi polysaccharide bio 67.5 22 0.00047 37.1 7.8 76 188-267 23-98 (578)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 66.3 73 0.0016 26.2 10.5 80 188-270 41-126 (126)
380 cd02682 MIT_AAA_Arch MIT: doma 66.2 16 0.00035 27.9 5.1 22 224-245 29-50 (75)
381 PF11207 DUF2989: Protein of u 65.8 27 0.00058 31.7 7.2 52 223-276 121-173 (203)
382 smart00101 14_3_3 14-3-3 homol 65.7 25 0.00053 32.6 7.2 48 224-271 144-199 (244)
383 KOG0890 Protein kinase of the 65.6 41 0.00089 40.3 10.1 81 189-273 1645-1732(2382)
384 PF05053 Menin: Menin; InterP 65.3 20 0.00042 37.4 6.9 66 205-271 275-346 (618)
385 KOG1839 Uncharacterized protei 64.5 15 0.00032 41.4 6.2 94 178-273 978-1087(1236)
386 COG4278 Uncharacterized conser 64.1 5 0.00011 37.3 2.2 8 153-160 253-260 (269)
387 cd02677 MIT_SNX15 MIT: domain 64.0 61 0.0013 24.5 8.1 69 190-271 4-72 (75)
388 PF12854 PPR_1: PPR repeat 63.5 17 0.00036 23.0 4.0 26 242-268 7-32 (34)
389 PF09797 NatB_MDM20: N-acetylt 62.7 43 0.00094 32.0 8.5 45 223-268 198-242 (365)
390 PRK15180 Vi polysaccharide bio 62.0 42 0.00091 34.8 8.4 86 187-273 712-806 (831)
391 KOG0128 RNA-binding protein SA 61.7 68 0.0015 34.9 10.2 90 181-271 121-218 (881)
392 TIGR02710 CRISPR-associated pr 61.0 1.3E+02 0.0027 29.9 11.4 50 182-232 139-195 (380)
393 KOG0890 Protein kinase of the 60.9 80 0.0017 38.0 11.3 93 179-275 1676-1787(2382)
394 KOG3783 Uncharacterized conser 60.3 28 0.00061 35.9 7.0 80 189-272 249-332 (546)
395 PF13041 PPR_2: PPR repeat fam 59.7 24 0.00052 23.5 4.6 27 244-271 5-31 (50)
396 KOG0128 RNA-binding protein SA 58.4 84 0.0018 34.2 10.2 84 187-271 93-178 (881)
397 PF09670 Cas_Cas02710: CRISPR- 58.3 71 0.0015 31.2 9.3 59 212-272 136-198 (379)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 58.1 62 0.0013 26.6 7.6 47 188-235 78-126 (126)
399 TIGR03504 FimV_Cterm FimV C-te 57.6 21 0.00046 24.4 3.9 25 211-236 3-27 (44)
400 PF02184 HAT: HAT (Half-A-TPR) 57.2 19 0.0004 23.4 3.4 26 189-215 3-28 (32)
401 PF13226 DUF4034: Domain of un 56.9 56 0.0012 30.9 7.9 95 183-277 10-133 (277)
402 PF12968 DUF3856: Domain of Un 56.6 42 0.00092 28.6 6.3 51 220-271 21-83 (144)
403 cd02678 MIT_VPS4 MIT: domain c 56.4 31 0.00067 25.7 5.1 19 219-237 17-35 (75)
404 PF10255 Paf67: RNA polymerase 56.2 20 0.00043 35.7 5.0 88 186-275 135-231 (404)
405 cd02677 MIT_SNX15 MIT: domain 56.1 17 0.00038 27.5 3.7 17 220-236 18-34 (75)
406 PF13226 DUF4034: Domain of un 54.8 65 0.0014 30.5 8.0 63 192-254 62-145 (277)
407 PF13041 PPR_2: PPR repeat fam 54.2 62 0.0013 21.5 6.1 31 207-238 3-33 (50)
408 KOG2422 Uncharacterized conser 54.1 81 0.0018 33.1 9.1 88 186-275 251-374 (665)
409 PF12854 PPR_1: PPR repeat 53.4 31 0.00067 21.7 4.0 27 206-233 6-32 (34)
410 cd02680 MIT_calpain7_2 MIT: do 53.4 27 0.00058 26.7 4.3 15 189-203 3-17 (75)
411 TIGR02996 rpt_mate_G_obs repea 53.2 28 0.00062 23.9 3.9 34 194-228 3-36 (42)
412 PF01535 PPR: PPR repeat; Int 53.0 23 0.00049 20.5 3.2 24 247-271 5-28 (31)
413 PRK13184 pknD serine/threonine 52.7 84 0.0018 34.7 9.5 87 188-276 534-624 (932)
414 PF07219 HemY_N: HemY protein 52.3 73 0.0016 25.3 7.0 38 220-258 71-108 (108)
415 TIGR00756 PPR pentatricopeptid 52.0 35 0.00076 19.9 4.0 24 247-271 5-28 (35)
416 PRK15180 Vi polysaccharide bio 51.7 34 0.00074 35.4 5.9 48 185-233 301-348 (831)
417 cd02678 MIT_VPS4 MIT: domain c 51.1 37 0.0008 25.3 4.7 44 189-241 3-46 (75)
418 PF04190 DUF410: Protein of un 50.5 1.1E+02 0.0024 28.1 8.8 82 185-267 22-114 (260)
419 smart00745 MIT Microtubule Int 50.3 31 0.00068 25.4 4.2 44 188-240 4-47 (77)
420 KOG0276 Vesicle coat complex C 50.1 41 0.00089 35.6 6.3 68 194-272 628-695 (794)
421 cd02682 MIT_AAA_Arch MIT: doma 50.0 29 0.00063 26.5 4.0 25 211-236 10-34 (75)
422 KOG0985 Vesicle coat protein c 49.7 1.1E+02 0.0023 34.7 9.5 61 205-272 1102-1162(1666)
423 cd02683 MIT_1 MIT: domain cont 49.3 1.1E+02 0.0025 23.1 7.2 44 190-242 4-47 (77)
424 PF04212 MIT: MIT (microtubule 48.8 45 0.00098 24.1 4.8 26 210-236 8-33 (69)
425 COG1747 Uncharacterized N-term 48.8 1.3E+02 0.0028 31.6 9.4 81 187-272 80-160 (711)
426 PF09205 DUF1955: Domain of un 48.5 89 0.0019 27.2 7.1 55 183-238 96-150 (161)
427 cd02656 MIT MIT: domain contai 48.2 40 0.00086 24.8 4.5 43 189-240 3-45 (75)
428 PF09797 NatB_MDM20: N-acetylt 47.8 62 0.0013 30.9 6.9 44 189-233 199-242 (365)
429 COG2909 MalT ATP-dependent tra 47.5 1E+02 0.0022 33.7 8.9 68 207-276 415-491 (894)
430 PF10952 DUF2753: Protein of u 47.5 1E+02 0.0022 26.4 7.1 23 246-269 54-76 (140)
431 PF04053 Coatomer_WDAD: Coatom 46.4 1.3E+02 0.0028 30.2 9.1 31 204-235 344-374 (443)
432 PF12753 Nro1: Nuclear pore co 46.0 27 0.00059 34.8 4.1 47 223-272 333-391 (404)
433 COG4259 Uncharacterized protei 45.9 53 0.0011 27.1 5.1 53 192-245 56-109 (121)
434 cd02684 MIT_2 MIT: domain cont 45.8 53 0.0012 24.7 4.9 19 219-237 17-35 (75)
435 KOG0739 AAA+-type ATPase [Post 45.3 1.1E+02 0.0023 30.3 7.9 69 189-267 7-76 (439)
436 PF13812 PPR_3: Pentatricopept 45.1 64 0.0014 19.0 4.4 26 245-271 4-29 (34)
437 PRK11619 lytic murein transgly 45.0 1.1E+02 0.0025 32.1 8.8 51 220-271 324-374 (644)
438 PF04212 MIT: MIT (microtubule 44.1 59 0.0013 23.5 4.8 44 189-241 2-45 (69)
439 KOG0276 Vesicle coat complex C 42.7 1.9E+02 0.0041 30.9 9.6 65 203-269 662-747 (794)
440 KOG1497 COP9 signalosome, subu 42.4 2.1E+02 0.0045 28.3 9.3 92 177-271 107-212 (399)
441 smart00745 MIT Microtubule Int 42.0 1.4E+02 0.0029 21.9 7.9 17 220-236 20-36 (77)
442 PRK15326 type III secretion sy 41.8 1.4E+02 0.0031 23.2 6.8 27 222-248 21-47 (80)
443 cd02681 MIT_calpain7_1 MIT: do 39.4 67 0.0015 24.5 4.6 45 190-243 4-48 (76)
444 cd02684 MIT_2 MIT: domain cont 39.3 71 0.0015 24.0 4.7 44 189-241 3-46 (75)
445 KOG3807 Predicted membrane pro 39.2 1E+02 0.0022 30.8 6.8 50 220-272 196-245 (556)
446 KOG2908 26S proteasome regulat 39.2 2.4E+02 0.0051 28.0 9.3 75 185-261 87-175 (380)
447 KOG1839 Uncharacterized protei 39.0 46 0.00099 37.6 4.9 82 189-272 954-1044(1236)
448 cd02679 MIT_spastin MIT: domai 37.8 62 0.0013 24.9 4.2 16 223-238 4-19 (79)
449 KOG2758 Translation initiation 37.7 1.6E+02 0.0036 29.1 7.9 78 191-271 113-195 (432)
450 TIGR02710 CRISPR-associated pr 37.6 1.3E+02 0.0028 29.9 7.3 54 213-268 136-196 (380)
451 cd02683 MIT_1 MIT: domain cont 37.0 73 0.0016 24.1 4.5 25 211-236 10-34 (77)
452 PF14863 Alkyl_sulf_dimr: Alky 36.5 65 0.0014 27.3 4.6 34 185-218 82-115 (141)
453 PF01239 PPTA: Protein prenylt 36.1 1E+02 0.0022 18.7 4.7 23 193-215 3-25 (31)
454 KOG1464 COP9 signalosome, subu 34.0 94 0.002 30.2 5.6 60 176-236 30-93 (440)
455 PF12921 ATP13: Mitochondrial 33.7 2.7E+02 0.0059 22.9 8.6 54 185-239 14-83 (126)
456 PHA00370 III attachment protei 33.4 46 0.001 31.4 3.4 17 223-239 254-270 (297)
457 PF14689 SPOB_a: Sensor_kinase 33.2 99 0.0022 22.3 4.5 15 256-270 36-50 (62)
458 KOG4151 Myosin assembly protei 32.3 78 0.0017 34.0 5.2 90 186-276 66-160 (748)
459 COG5536 BET4 Protein prenyltra 32.1 3.2E+02 0.0069 26.5 8.7 98 179-277 38-144 (328)
460 KOG3540 Beta amyloid precursor 32.1 1.8E+02 0.0039 30.0 7.4 52 191-242 330-382 (615)
461 COG4259 Uncharacterized protei 32.1 1.4E+02 0.003 24.7 5.5 49 226-275 55-104 (121)
462 KOG2034 Vacuolar sorting prote 31.9 53 0.0011 35.9 3.9 50 180-234 365-415 (911)
463 KOG2581 26S proteasome regulat 31.8 97 0.0021 31.4 5.4 64 178-242 214-281 (493)
464 PF12583 TPPII_N: Tripeptidyl 31.5 96 0.0021 26.6 4.7 29 222-250 90-118 (139)
465 cd02656 MIT MIT: domain contai 31.4 1.1E+02 0.0024 22.3 4.7 18 219-236 17-34 (75)
466 PF10952 DUF2753: Protein of u 30.9 1.8E+02 0.0039 24.8 6.2 59 183-242 11-88 (140)
467 PF15015 NYD-SP12_N: Spermatog 30.4 2.3E+02 0.0049 29.1 7.7 71 183-254 238-311 (569)
468 smart00777 Mad3_BUB1_I Mad3/BU 29.9 3.3E+02 0.0071 22.7 7.9 42 226-268 81-124 (125)
469 PF14852 Fis1_TPR_N: Fis1 N-te 29.6 84 0.0018 20.5 3.2 10 245-254 4-13 (35)
470 PF02064 MAS20: MAS20 protein 28.6 1.3E+02 0.0027 25.1 4.9 35 211-246 67-101 (121)
471 PF04097 Nic96: Nup93/Nic96; 28.3 1.5E+02 0.0033 30.8 6.6 84 178-267 263-351 (613)
472 KOG2908 26S proteasome regulat 28.3 2.5E+02 0.0054 27.8 7.4 65 206-271 73-143 (380)
473 COG4371 Predicted membrane pro 28.2 48 0.001 31.4 2.5 7 200-206 169-175 (334)
474 PF05053 Menin: Menin; InterP 28.0 1.6E+02 0.0034 31.0 6.3 46 191-237 297-347 (618)
475 PF11817 Foie-gras_1: Foie gra 28.0 1.2E+02 0.0027 27.4 5.2 47 225-272 155-207 (247)
476 KOG0687 26S proteasome regulat 27.8 3.9E+02 0.0084 26.5 8.7 89 178-271 72-172 (393)
477 PF00637 Clathrin: Region in C 27.6 28 0.00061 28.0 0.8 80 181-268 15-95 (143)
478 PF10961 DUF2763: Protein of u 27.5 67 0.0014 25.4 2.9 25 147-171 62-86 (91)
479 PRK07772 single-stranded DNA-b 26.7 60 0.0013 28.9 2.8 29 147-175 123-151 (186)
480 PF15297 CKAP2_C: Cytoskeleton 26.4 4.9E+02 0.011 25.7 9.1 80 181-262 111-193 (353)
481 COG5091 SGT1 Suppressor of G2 26.2 96 0.0021 29.9 4.2 85 191-276 13-112 (368)
482 KOG0985 Vesicle coat protein c 26.1 1.6E+02 0.0035 33.4 6.3 69 194-269 1062-1130(1666)
483 COG1747 Uncharacterized N-term 26.0 7.1E+02 0.015 26.3 10.5 95 179-276 105-238 (711)
484 PF13646 HEAT_2: HEAT repeats; 25.8 2.5E+02 0.0055 20.1 8.4 76 193-275 1-76 (88)
485 PF14689 SPOB_a: Sensor_kinase 25.7 1.4E+02 0.0031 21.4 4.2 45 191-236 7-51 (62)
486 COG3014 Uncharacterized protei 25.4 3.9E+02 0.0085 26.7 8.3 79 192-272 40-154 (449)
487 PRK15490 Vi polysaccharide bio 25.3 1.9E+02 0.0042 30.3 6.5 62 181-248 50-111 (578)
488 KOG2041 WD40 repeat protein [G 25.3 1.9E+02 0.0041 31.5 6.5 89 166-268 786-877 (1189)
489 cd00280 TRFH Telomeric Repeat 25.2 5.2E+02 0.011 23.5 8.4 76 189-266 85-167 (200)
490 KOG2997 F-box protein FBX9 [Ge 25.0 1E+02 0.0022 30.3 4.1 50 183-248 10-59 (366)
491 TIGR01659 sex-lethal sex-letha 24.6 56 0.0012 31.6 2.4 23 146-168 287-309 (346)
492 PF12753 Nro1: Nuclear pore co 24.4 88 0.0019 31.3 3.7 43 189-234 334-388 (404)
493 cd09034 BRO1_Alix_like Protein 24.3 2.2E+02 0.0048 26.8 6.4 76 193-272 188-280 (345)
494 KOG4563 Cell cycle-regulated h 24.2 1.5E+02 0.0031 29.6 5.1 52 210-263 44-103 (400)
495 KOG3540 Beta amyloid precursor 23.9 3E+02 0.0066 28.5 7.4 64 211-274 315-379 (615)
496 PRK15326 type III secretion sy 23.5 1.9E+02 0.0041 22.5 4.7 49 187-236 21-69 (80)
497 PF02064 MAS20: MAS20 protein 23.5 1.4E+02 0.003 24.8 4.3 29 246-275 67-95 (121)
498 PF10917 DUF2708: Protein of u 23.3 60 0.0013 22.4 1.6 18 153-170 19-36 (43)
499 KOG3616 Selective LIM binding 23.2 1.3E+02 0.0029 33.0 4.9 65 200-266 988-1057(1636)
500 KOG0889 Histone acetyltransfer 23.0 1.8E+02 0.0039 36.7 6.4 91 178-271 2816-2914(3550)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.56 E-value=4.2e-14 Score=118.47 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
...+...|++++|+.+|++++.++|.++.+|+++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCH
Confidence 455667799999999999999999999999999999997 89999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 023753 260 SRAESYFDQAVKSAPDD 276 (277)
Q Consensus 260 deAi~~yekALeldPdD 276 (277)
++|+..|++|++++|++
T Consensus 109 ~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 109 GLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999999987
No 2
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=1.3e-12 Score=105.24 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=90.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
+...+...+++++|+..|+++++++|.++.++.++|.++. ..+++++|+.+|+++++++|+++.+++.+|.+++. .|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCC
Confidence 3355666799999999999999999999999999999997 78999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
+++|+.+|+++++++|++
T Consensus 101 ~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 101 PESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 999999999999999986
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=5e-13 Score=124.80 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=87.2
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
..++|.+|+..|.+||+++|.|+.+|.|.|.+|. +.|.|+.|++.|+.||.+||....+|..||.+|+. +|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence 4589999999999999999999999999999997 89999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhCCCC
Q 023753 265 YFDQAVKSAPDD 276 (277)
Q Consensus 265 ~yekALeldPdD 276 (277)
.|++||+++|+|
T Consensus 171 aykKaLeldP~N 182 (304)
T KOG0553|consen 171 AYKKALELDPDN 182 (304)
T ss_pred HHHhhhccCCCc
Confidence 999999999987
No 4
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.42 E-value=2.9e-12 Score=113.07 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=87.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd--~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
+.++...+++++|+.+|++|++++|+++.++.++|.+++...|+ +++|++.+++|++++|+++.+++++|.++++ .|
T Consensus 80 g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g 158 (198)
T PRK10370 80 GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA 158 (198)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC
Confidence 35677789999999999999999999999999999976436676 5999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
++++|+.+|+++++++|.+
T Consensus 159 ~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 159 DYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999875
No 5
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=2.8e-12 Score=122.48 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=89.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
..+...+++++|+.+|++||+++|+++.+++++|.+|. ..+++++|+.+|++|+.++|+++.+++.+|.+++. +|+|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHH
Confidence 34445689999999999999999999999999999997 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+.+|++|++++|++
T Consensus 88 eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 88 TAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999999986
No 6
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=4.1e-12 Score=117.86 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=89.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++...|++++|+..|++|++++|+++.+|+++|.++. ..+++++|++.|++|++++|++..++.++|.+++. .|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~ 149 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYE 149 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 45667799999999999999999999999999999887 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|++.|+++++++|++
T Consensus 150 eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 150 LAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999999987
No 7
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=1.3e-11 Score=106.35 Aligned_cols=98 Identities=7% Similarity=-0.060 Sum_probs=88.9
Q ss_pred cchhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 174 GFSGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 174 ~~~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
..+..|. -.+...|++++|+..|+-+..+||.++..|++||.++. .+|+|++|+.+|.+|+.++|+||.++.++|.|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3444454 33345699999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC
Q 023753 252 IWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 252 l~~~~Gd~deAi~~yekALeld 273 (277)
++. .|+.+.|++.|+.||...
T Consensus 113 ~L~-lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLA-CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHH-cCCHHHHHHHHHHHHHHh
Confidence 999 999999999999999875
No 8
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=8e-12 Score=90.52 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 023753 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP 274 (277)
Q Consensus 205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-d~deAi~~yekALeldP 274 (277)
+++.+|.++|.++. ..+++++|+.+|++||+++|+++.+++++|.+++. ++ ++++|+.+|++|++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 46889999999997 89999999999999999999999999999999999 98 79999999999999998
No 9
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.32 E-value=2.9e-11 Score=85.55 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=86.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
..+...+++++|+.+|+++++..|.+..++..+|.++. ..+++++|+.+|++++.+.|.+..++..+|.++.. .++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHH
Confidence 44556799999999999999999999999999999987 78999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCC
Q 023753 261 RAESYFDQAVKSAPD 275 (277)
Q Consensus 261 eAi~~yekALeldPd 275 (277)
+|..+++++++.+|+
T Consensus 86 ~a~~~~~~~~~~~~~ 100 (100)
T cd00189 86 EALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHccCCC
Confidence 999999999999884
No 10
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=1.5e-10 Score=89.87 Aligned_cols=94 Identities=12% Similarity=0.106 Sum_probs=85.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQ 254 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~ 254 (277)
..+...+++++|+.+|+++++.+|++ +.+++.+|.++. ..+++++|+.+|++++..+|++ +.++..+|.++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 34556799999999999999999987 578999999997 8999999999999999999885 6789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 023753 255 AHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeldPdD 276 (277)
.+++++|+.+|+++++..|++
T Consensus 89 -~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 89 -LGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred -hCChHHHHHHHHHHHHHCcCC
Confidence 999999999999999999986
No 11
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.8e-11 Score=120.31 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=82.7
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ye 267 (277)
++++|+.++++|++++|+++.++..+|.++. ..+++++|+.+|++|++++|+++.+++.+|.++.. .|++++|+.+|+
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~ 396 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 3678999999999999999999999999886 78999999999999999999999999999999999 999999999999
Q ss_pred HHHHhCCCC
Q 023753 268 QAVKSAPDD 276 (277)
Q Consensus 268 kALeldPdD 276 (277)
+|++++|.+
T Consensus 397 ~Al~l~P~~ 405 (553)
T PRK12370 397 ECLKLDPTR 405 (553)
T ss_pred HHHhcCCCC
Confidence 999999986
No 12
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=6e-11 Score=104.71 Aligned_cols=90 Identities=13% Similarity=0.212 Sum_probs=82.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--ASRAE 263 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd--~deAi 263 (277)
.++.++++..|+++++.+|+|+.+|..+|.++. ..+++++|+.+|++|++++|+++.++..+|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 466789999999999999999999999999886 899999999999999999999999999999986432677 59999
Q ss_pred HHHHHHHHhCCCC
Q 023753 264 SYFDQAVKSAPDD 276 (277)
Q Consensus 264 ~~yekALeldPdD 276 (277)
..|+++++++|++
T Consensus 131 ~~l~~al~~dP~~ 143 (198)
T PRK10370 131 EMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999987
No 13
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=3.8e-11 Score=109.14 Aligned_cols=88 Identities=19% Similarity=0.285 Sum_probs=77.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA 262 (277)
|...|++..|.+.+++||+.||++..+|..+|.+|. ..|+.+.|.+.|++|+.++|++.++++|+|.+++. +|++++|
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA 122 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEA 122 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHH
Confidence 445789999999999999999999999999998775 88999999999999999999999999999999988 8888888
Q ss_pred HHHHHHHHHh
Q 023753 263 ESYFDQAVKS 272 (277)
Q Consensus 263 i~~yekALel 272 (277)
..+|++|++.
T Consensus 123 ~q~F~~Al~~ 132 (250)
T COG3063 123 MQQFERALAD 132 (250)
T ss_pred HHHHHHHHhC
Confidence 8888888763
No 14
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=6.6e-11 Score=107.58 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=86.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHK 257 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~G 257 (277)
.+|...|+.+.|.+.|++|+.++|++..+++|||.+|. .+|++++|..+|++|+. +|. -+..+.|+|.|.++ +|
T Consensus 77 ~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~-~g 153 (250)
T COG3063 77 HYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALK-AG 153 (250)
T ss_pred HHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhh-cC
Confidence 55667899999999999999999999999999999999 78999999999999998 454 56789999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
+++.|.++|+++|+++|++
T Consensus 154 q~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 154 QFDQAEEYLKRALELDPQF 172 (250)
T ss_pred CchhHHHHHHHHHHhCcCC
Confidence 9999999999999999986
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=1.6e-10 Score=116.54 Aligned_cols=94 Identities=22% Similarity=0.173 Sum_probs=82.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++...|++++|+.+|+++++++|+++.++.++|.++. ..+++++|+.+|++|++++|+++.+++.+|.+++. .|+++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~ 416 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFA 416 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence 44556788999999999999999999989999998886 78899999999999999999999999999998888 89999
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+.+|+++++++|++
T Consensus 417 ~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHHHHHHcCccC
Confidence 9999999999998875
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.19 E-value=6e-11 Score=119.77 Aligned_cols=95 Identities=22% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
.-+|..+|++++|+.+|+.||.++|..+.++.|+|..|. .+|+...|+++|.+||.++|..++++.+||.+|-+ .|+.
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k-e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-sGni 472 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK-EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-SGNI 472 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH-HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-cCCc
Confidence 345555677777777777777777777777777777776 56777777777777777777777777777777776 7777
Q ss_pred HHHHHHHHHHHHhCCCC
Q 023753 260 SRAESYFDQAVKSAPDD 276 (277)
Q Consensus 260 deAi~~yekALeldPdD 276 (277)
.+|+..|+.||++.|+.
T Consensus 473 ~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 473 PEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHHHHHccCCCC
Confidence 77777777777777764
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.18 E-value=2.5e-10 Score=115.20 Aligned_cols=95 Identities=13% Similarity=0.157 Sum_probs=83.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
..++...+++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|++|++++|++..++..+|.+++. +|++
T Consensus 372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~ 449 (615)
T TIGR00990 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSI 449 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCH
Confidence 345556788999999999999999999999999999887 78999999999999999999999999999998888 8999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 023753 260 SRAESYFDQAVKSAPDD 276 (277)
Q Consensus 260 deAi~~yekALeldPdD 276 (277)
++|+.+|+++++..|++
T Consensus 450 ~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999988875
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.18 E-value=2.2e-10 Score=122.45 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=80.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++...|++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHH
Confidence 45556788888888888888888888888888888886 68888888888888888888888888888888888 88888
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+.+|++|++++|++
T Consensus 695 eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 695 ATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 8888888888888875
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=1.1e-10 Score=97.81 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
.--+.+|+++++++|++ ++++|.++. ..|++++|+.+|++++.++|.++.++..+|.++.. .|++++|+.+|++|
T Consensus 10 ~~~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A 84 (144)
T PRK15359 10 KIPEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA 84 (144)
T ss_pred CCHHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 34568999999999986 556788887 79999999999999999999999999999999999 99999999999999
Q ss_pred HHhCCCC
Q 023753 270 VKSAPDD 276 (277)
Q Consensus 270 LeldPdD 276 (277)
++++|++
T Consensus 85 l~l~p~~ 91 (144)
T PRK15359 85 LMLDASH 91 (144)
T ss_pred HhcCCCC
Confidence 9999987
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=8.1e-10 Score=92.66 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=83.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
..+...+++++|+..|+++++.+|++..++..+|.++. ..+++++|+++|+++++.+|.++.++.++|.++.. .|+++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~ 116 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYE 116 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHH
Confidence 56667899999999999999999999999999999887 79999999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHhC
Q 023753 261 RAESYFDQAVKSA 273 (277)
Q Consensus 261 eAi~~yekALeld 273 (277)
+|+.+|++++...
T Consensus 117 ~A~~~~~~~~~~~ 129 (234)
T TIGR02521 117 QAMQQFEQAIEDP 129 (234)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998753
No 21
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=9.6e-11 Score=88.69 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
++++++|+.+|+++++.+|. +..+++.+|.+++ ..++|++|+.++++ ++.+|.++..++.+|.+++. ++++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 47899999999999999995 5677888999998 89999999999999 88999999999999999999 99999999
Q ss_pred HHHHHH
Q 023753 264 SYFDQA 269 (277)
Q Consensus 264 ~~yekA 269 (277)
.+|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999986
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.15 E-value=1.4e-10 Score=117.10 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=67.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
..++...|+..+|+.+|.+||.+.|+++.+++|||.++. .++.+++|...|++|++..|..+.++.+||.+|-+ +|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNL 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccH
Confidence 344455577777777777777777777777777777776 46777777777777777777777777777777766 7777
Q ss_pred HHHHHHHHHHHHhCCC
Q 023753 260 SRAESYFDQAVKSAPD 275 (277)
Q Consensus 260 deAi~~yekALeldPd 275 (277)
++|+.+|+.||++.|.
T Consensus 405 ~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 405 DDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHHHHhcCch
Confidence 7777777777777764
No 23
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.13 E-value=1.9e-10 Score=82.59 Aligned_cols=63 Identities=24% Similarity=0.444 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 212 NYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 212 nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+|..++ ..|++++|+.+|+++++.+|+++.+++.+|.+++. +|++++|+.+|+++++++|++
T Consensus 2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 5677776 78899999999999999999999999999999988 899999999999999999886
No 24
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.13 E-value=3.7e-10 Score=90.91 Aligned_cols=82 Identities=17% Similarity=0.093 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 194 ~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+.|+++++++|++..+.+.+|.++. ..+++++|+.+|++++.++|.++.++..+|.++.. .+++++|+.+|+++++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999887 79999999999999999999999999999999999 999999999999999999
Q ss_pred CCCC
Q 023753 274 PDDW 277 (277)
Q Consensus 274 PdD~ 277 (277)
|+++
T Consensus 82 p~~~ 85 (135)
T TIGR02552 82 PDDP 85 (135)
T ss_pred CCCh
Confidence 9864
No 25
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.12 E-value=9.2e-10 Score=93.88 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=84.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
..+...+++++|+.+|+++++++|+. +.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++.. .+
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g 120 (172)
T PRK02603 43 MSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RG 120 (172)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cC
Confidence 44556799999999999999988764 578999999887 89999999999999999999999999999999988 77
Q ss_pred C--------------HHHHHHHHHHHHHhCCCC
Q 023753 258 D--------------ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d--------------~deAi~~yekALeldPdD 276 (277)
+ +++|++++++++.++|++
T Consensus 121 ~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 121 EKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 7 688999999999999985
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=6.6e-10 Score=111.48 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=85.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
..++...+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|.++.+++.++.+++. .+++
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~ 422 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGI 422 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCH
Confidence 345667799999999999999999999999999999987 89999999999999999999999887777777877 8999
Q ss_pred HHHHHHHHHHHHhC-CCC
Q 023753 260 SRAESYFDQAVKSA-PDD 276 (277)
Q Consensus 260 deAi~~yekALeld-PdD 276 (277)
++|+.+++++++.+ |++
T Consensus 423 eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDN 440 (553)
T ss_pred HHHHHHHHHHHHhccccC
Confidence 99999999999876 443
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3.6e-11 Score=121.40 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
++++.|+++|+|||++||+++.+|..+|.=+. ...++++|..+|++||.++|++..||+-+|.+|.+ +++++.|+-+|
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek~e~Ae~~f 512 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEKLEFAEFHF 512 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cchhhHHHHHH
Confidence 34455555555555555555555555444332 34445555555555555555555555555555555 55555555555
Q ss_pred HHHHHhCCC
Q 023753 267 DQAVKSAPD 275 (277)
Q Consensus 267 ekALeldPd 275 (277)
++|+++||.
T Consensus 513 qkA~~INP~ 521 (638)
T KOG1126|consen 513 QKAVEINPS 521 (638)
T ss_pred HhhhcCCcc
Confidence 555555554
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=1e-10 Score=118.20 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=85.8
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
+.++|+|..+|++||..+|.+..||+.+|.+|. ++++++.|+-+|++|+++||.+...+..+|.++.+ .|+.++|+.+
T Consensus 468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~ 545 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQL 545 (638)
T ss_pred hHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHH
Confidence 457889999999999999999999999999997 89999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhCCCCC
Q 023753 266 FDQAVKSAPDDW 277 (277)
Q Consensus 266 yekALeldPdD~ 277 (277)
|++|+.++|.|.
T Consensus 546 ~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 546 YEKAIHLDPKNP 557 (638)
T ss_pred HHHHHhcCCCCc
Confidence 999999999874
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.10 E-value=1.8e-10 Score=104.73 Aligned_cols=99 Identities=23% Similarity=0.249 Sum_probs=85.3
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
..+..++...|+.++|+.+|++|++++|+|+.++..+++++. ..+++++|.+.+++..+..|.++.++..+|.++.. .
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-l 227 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-L 227 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-c
Confidence 345577788899999999999999999999999999999886 78999999999999998889999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCC
Q 023753 257 KDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 257 Gd~deAi~~yekALeldPdD~ 277 (277)
|++++|+.+|+++++.+|+|+
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-H
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999999874
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.10 E-value=1.9e-09 Score=90.40 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=64.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~al~~LA~ll~~~~Gd 258 (277)
.++...+++++|+.+|+++++.+|.+..++.+++.++. ..+++++|+.+|++++... |....++..+|.+++. .++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~ 150 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGD 150 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCC
Confidence 45555677777777777777777777777777777665 6677777777777776643 3445566666766666 677
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
+++|+.+|+++++.+|++
T Consensus 151 ~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777777777777766654
No 31
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.08 E-value=2.1e-09 Score=91.04 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=80.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW---- 253 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~---- 253 (277)
..+...+++++|+.+|++|+.+.|+. +.++.++|.++. ..+++++|+.+|++|+.++|.+...+.++|.++.
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 44556799999999999999997763 468999999887 8999999999999999999999999999999998
Q ss_pred ---HHcCCHH-------HHHHHHHHHHHhCCCC
Q 023753 254 ---QAHKDAS-------RAESYFDQAVKSAPDD 276 (277)
Q Consensus 254 ---~~~Gd~d-------eAi~~yekALeldPdD 276 (277)
. .|+++ +|+.+|++++..+|++
T Consensus 122 ~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 122 QAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHH-cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5 66765 6777777888888864
No 32
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=114.39 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=86.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
-+|...++|++|+.+|+.||+.+|+|...|+.||..|. ...+.++|+..|+||+++.|.+..+.+++|..+++ +|.|+
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~yk 515 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYK 515 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHH
Confidence 44555688999999999999999999999999999997 77899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCC
Q 023753 261 RAESYFDQAVKSAPD 275 (277)
Q Consensus 261 eAi~~yekALeldPd 275 (277)
+|+++|-.||.+.+.
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998765
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.04 E-value=2.8e-09 Score=109.32 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=71.2
Q ss_pred HHHHHHhCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 179 NNNYSNNNHGSSS----TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 179 Y~~m~e~~Gd~de----Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
+..++...|++++ |+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455556677664 677777777777777777777777775 67777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 023753 255 AHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeldPdD 276 (277)
.|++++|+..|+++++.+|++
T Consensus 331 -~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 331 -VGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred -CCCHHHHHHHHHHHHHhCccc
Confidence 777777777777777777764
No 34
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=2.3e-09 Score=111.01 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=87.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.+....|.+++|+..++++++++|++..++.+++.+|. +.+++++|+..+++++..+|+++.+++.+|.++.+ .|+++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~ 171 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSE 171 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchH
Confidence 45556799999999999999999999999999999998 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+.+|+++++.+|++
T Consensus 172 ~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 172 QADACFERLSRQHPEF 187 (694)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 9999999999988874
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.02 E-value=2.4e-09 Score=114.55 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
.|++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|++|+.++|+++.++.++|.++.. .|++++|+.+
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence 49999999999999999996 999999999987 89999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhCCCC
Q 023753 266 FDQAVKSAPDD 276 (277)
Q Consensus 266 yekALeldPdD 276 (277)
|++|++++|++
T Consensus 666 l~~AL~l~P~~ 676 (987)
T PRK09782 666 LERAHKGLPDD 676 (987)
T ss_pred HHHHHHhCCCC
Confidence 99999999986
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.00 E-value=4e-09 Score=108.19 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=90.9
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
..+..++...|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~-~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-~ 365 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALR-QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-A 365 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-C
Confidence 355677778899999999999999999999999999999997 89999999999999999999999888888998988 9
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 023753 257 KDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 257 Gd~deAi~~yekALeldPdD 276 (277)
|++++|+.+|+++++++|++
T Consensus 366 G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCHHHHHHHHHHHHHhChhh
Confidence 99999999999999999986
No 37
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.98 E-value=1.5e-09 Score=77.92 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=55.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
..+...|++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+.+|+++++++|++|
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667899999999999999999999999999999997 89999999999999999999986
No 38
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=5.2e-09 Score=96.36 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=90.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
|.+....+|++..|+..+++|.+++|+|+.+|..+|.+|. +.|+++.|...|.+|+++.|+++.++.|+|..|+. .||
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCC
Confidence 7788888999999999999999999999999999999996 89999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
++.|+.++..+...-+.|
T Consensus 184 ~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 184 LEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHHHHHHHHHhCCCCc
Confidence 999999999998776644
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=6.2e-09 Score=103.88 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=76.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++...|++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++..+|.+++. .|+++
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 854 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEAD 854 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHH
Confidence 45556788888888888888888888888888888776 6677 778888888888888888888888888888 88888
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+.+|+++++++|.+
T Consensus 855 ~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 855 RALPLLRKAVNIAPEA 870 (899)
T ss_pred HHHHHHHHHHhhCCCC
Confidence 8888888888888865
No 40
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=7.6e-09 Score=96.84 Aligned_cols=98 Identities=21% Similarity=0.154 Sum_probs=89.8
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
..+.+|...+++..|...|++|+++.|+|+.++..||.+++...+ .-.+|...|++|++.||+|..+++.||..+++
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe- 239 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE- 239 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-
Confidence 456788889999999999999999999999999999998874444 46799999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD 276 (277)
+++|++|+..++..+...|.+
T Consensus 240 ~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 240 QGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred cccHHHHHHHHHHHHhcCCCC
Confidence 999999999999999998876
No 41
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.96 E-value=1e-08 Score=94.83 Aligned_cols=91 Identities=10% Similarity=0.172 Sum_probs=84.2
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcC
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHK 257 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~G 257 (277)
...+++++|+..|++.++..|++ +.+++.+|.+|+ ..+++++|+.+|+++++..|+ .+++++.+|.++.. .+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC
Confidence 44689999999999999999998 579999999998 899999999999999998887 57889999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
++++|+.+|+++++..|+.
T Consensus 232 ~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999975
No 42
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.96 E-value=1.9e-09 Score=77.95 Aligned_cols=60 Identities=25% Similarity=0.256 Sum_probs=55.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP 239 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-d~eeA~e~~ekALeldP 239 (277)
.+..+...+++++|+.+|++||+++|+++.+++++|.++. ..+ ++++|+++|++|++++|
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 3456667899999999999999999999999999999997 788 79999999999999998
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=7.7e-09 Score=91.03 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=86.5
Q ss_pred hhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 023753 176 SGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSL 247 (277)
Q Consensus 176 ~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~---al~~ 247 (277)
..+|. ..+...+++++|+..|++++..+|+++ .+++.+|.++. ..+++++|+..|+++++..|+++. +++.
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34444 344567999999999999999999987 57899999887 899999999999999999998876 6888
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCC
Q 023753 248 YADLIWQAH--------KDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 248 LA~ll~~~~--------Gd~deAi~~yekALeldPdD 276 (277)
+|.+++. . +++++|+..|++++..+|++
T Consensus 113 ~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 113 RGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 9999987 5 78999999999999999986
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.94 E-value=1.3e-08 Score=94.52 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=78.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
.+.++...+++++|+..|++|++++|++..++.++|.+++ ..|++++|++.|+++++++|+++..... ..++.. .++
T Consensus 104 lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~-~~~ 180 (296)
T PRK11189 104 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY-YGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAES-KLD 180 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHc-cCC
Confidence 3466677899999999999999999999999999999987 7999999999999999999999853322 223344 789
Q ss_pred HHHHHHHHHHHHHh-CCCC
Q 023753 259 ASRAESYFDQAVKS-APDD 276 (277)
Q Consensus 259 ~deAi~~yekALel-dPdD 276 (277)
+++|+..|++++.. +|+.
T Consensus 181 ~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 181 PKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHHHHHHHhhCCccc
Confidence 99999999887755 4443
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.6e-09 Score=105.64 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=76.2
Q ss_pred hhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753 176 SGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (277)
Q Consensus 176 ~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~ 253 (277)
+.||+ +|+...+++++|+.-|++|+.++|+|..++..++.+++ +++++++++..|+.+++.-|+.++++..+|.++.
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 34444 56666677777888888888888877777777777776 6677778888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 023753 254 QAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 254 ~~~Gd~deAi~~yekALeldPd 275 (277)
. +++|++|+++|++|+++.|.
T Consensus 474 D-qqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 474 D-QQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred h-HHhHHHHHHHHHHHHhhccc
Confidence 8 88888888888888888886
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=1e-08 Score=106.62 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=91.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
...++...+++++|+++|++++...|+++.++..+|.++. ..|++++|++.+++|++++|+++.+++.+|.++.. .++
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~-~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~-~~~ 442 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ-ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD-LQE 442 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCC
Confidence 4467777899999999999999999999999999999886 89999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
+++|+..++++++..|++
T Consensus 443 ~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 443 WRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999997
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4e-09 Score=103.80 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=62.2
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
....+.++|+.+|++|+++||....+|..+|.=|. .+++..+|++.|++||+++|.|..+|+.+|.+|-- ++-..=|+
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaL 418 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYAL 418 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHH
Confidence 34456667777777777777777777777776554 46666777777777777777777777777776665 66666666
Q ss_pred HHHHHHHHhCCCC
Q 023753 264 SYFDQAVKSAPDD 276 (277)
Q Consensus 264 ~~yekALeldPdD 276 (277)
-||++|+++.|+|
T Consensus 419 yYfqkA~~~kPnD 431 (559)
T KOG1155|consen 419 YYFQKALELKPND 431 (559)
T ss_pred HHHHHHHhcCCCc
Confidence 6666666666665
No 48
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.91 E-value=3.2e-09 Score=76.38 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=58.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
..|++++|+.+|+++++.+|+|..+++.+|.+|. ..|++++|+..+++++..+|+++.++..++.+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 4688999999999999999999999999999997 89999999999999999999998888777653
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=1.2e-08 Score=105.78 Aligned_cols=99 Identities=13% Similarity=-0.017 Sum_probs=92.0
Q ss_pred cchhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (277)
Q Consensus 174 ~~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~ 253 (277)
..-..|...+...+++++|+..++++++.+|+++.+++++|.++. ..|++++|+++|++++..+|+++.++..+|.++.
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 344567788888899999999999999999999999999999996 8999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC
Q 023753 254 QAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 254 ~~~Gd~deAi~~yekALeldP 274 (277)
. .|+.++|...|++|++..-
T Consensus 200 ~-~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 200 R-RGALWRARDVLQAGLDAIG 219 (694)
T ss_pred H-cCCHHHHHHHHHHHHHhhC
Confidence 8 9999999999999998753
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.91 E-value=1.6e-08 Score=105.22 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=89.5
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
....++...+++++|+.+|+++++++|+++.++..++.++. ..+++++|+.+++++++.+|+++. +..+|.++.. .+
T Consensus 54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g 130 (765)
T PRK10049 54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AG 130 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CC
Confidence 34456777899999999999999999999999999999886 799999999999999999999999 9999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
++++|+..|+++++++|++
T Consensus 131 ~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQT 149 (765)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999986
No 51
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.2e-09 Score=103.50 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=87.3
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA 262 (277)
+...++|.+|+.+|.+||..+|+|+.++.|.|.+|. ..+++..|+..++++|+++|++..+|...|.++.. +.+|++|
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHH
Confidence 344689999999999999999999999999999886 89999999999999999999999999999999998 9999999
Q ss_pred HHHHHHHHHhCCCC
Q 023753 263 ESYFDQAVKSAPDD 276 (277)
Q Consensus 263 i~~yekALeldPdD 276 (277)
++.|+++++++|++
T Consensus 446 leay~eale~dp~~ 459 (539)
T KOG0548|consen 446 LEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHhcCchh
Confidence 99999999999975
No 52
>PLN02789 farnesyltranstransferase
Probab=98.88 E-value=2.2e-08 Score=94.96 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
|++.++...+..++|+..+.++|+++|++..+|+..+.++. ..+ ++++|+.+++++++.+|++..+|++.+.++.. .
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-L 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-c
Confidence 66666777777777777777777777777777777777765 444 56777777777777777777777776666655 5
Q ss_pred CCH--HHHHHHHHHHHHhCCCC
Q 023753 257 KDA--SRAESYFDQAVKSAPDD 276 (277)
Q Consensus 257 Gd~--deAi~~yekALeldPdD 276 (277)
++. ++++.+++++++++|+|
T Consensus 120 ~~~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKN 141 (320)
T ss_pred CchhhHHHHHHHHHHHHhCccc
Confidence 542 55666666666666665
No 53
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.88 E-value=1.3e-08 Score=74.24 Aligned_cols=70 Identities=23% Similarity=0.205 Sum_probs=60.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
+.++...+++++|+++++++++++|+++.+|..+|.++. ..|++.+|.+.|+++++.+|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 356777889999999999999999999999999999887 7899999999999999999999887765553
No 54
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.88 E-value=2.4e-08 Score=99.64 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=83.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
.+..+...+++++|+..|+++++.+|+++.++..+|.++. ..+++++|+..++++++.+|.+..++..+|.+++. .|+
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 208 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGN 208 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCC
Confidence 3355566788999999999999999999989999998886 78899999999999999999999899889988888 899
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
+++|+.+|+++++++|++
T Consensus 209 ~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 209 IELALAAYRKAIALRPNN 226 (899)
T ss_pred HHHHHHHHHHHHhhCCCC
Confidence 999999999999988875
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.87 E-value=2.3e-08 Score=108.33 Aligned_cols=55 Identities=22% Similarity=0.330 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 221 ~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+++++|+++|++|++++|+++.+++.+|.+|+. .|++++|+..|+++++++|++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCC
Confidence 4556666666666666666666666666666665 666666666666666666554
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.86 E-value=3.2e-08 Score=92.51 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~~~Gd~d 260 (277)
.+...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|++++..+|.+ ..++..++.+|.. .|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-LGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-cCCHH
Confidence 3455688888888888888888888888888888776 6788888888888888887765 3556677777777 78888
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+.+++++++..|+.
T Consensus 267 ~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 267 EGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 8888888888877753
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.85 E-value=2.2e-08 Score=108.42 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=91.8
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
...+..++...+++++|+.+|+++++++|+|+.++.+++.+|. ..|++++|+++|+++++.+|+++.++..+|.++..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~-~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~- 683 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDI-AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA- 683 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh-
Confidence 3456678888999999999999999999999999999999997 78999999999999999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD 276 (277)
.|++++|+++|++++...|++
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccC
Confidence 999999999999999987654
No 58
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.85 E-value=1.1e-08 Score=100.78 Aligned_cols=69 Identities=17% Similarity=0.066 Sum_probs=52.5
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 202 ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a---l~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.+|+++.+|+|+|.+|+ ..++|++|+.+|++||+++|+++.+ |+++|.+|.. +|++++|+++|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 37777777777777776 6777777777777777777777744 7777777777 77777777777777776
No 59
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=4.2e-08 Score=93.06 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=84.8
Q ss_pred HHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 181 NYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 181 ~m~e~~G-d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~--eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
.++...+ ++++|+..++++++.+|++..+|++.+.++. ..++. ++++.+++++++++|+|..+|.+.+.++.. .+
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~ 156 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LG 156 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hh
Confidence 3444555 6799999999999999999999999998885 66663 789999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
++++|+++++++|+.+|.|
T Consensus 157 ~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 157 GWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred hHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999987
No 60
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.2e-08 Score=95.91 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=84.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPG----N-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~----n-----------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a 244 (277)
++.+...++|..|...|++|+..=.. + ..++.|+|.++. +.++|.+|++++.++|.++|+|.-+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhH
Confidence 35677789999999999999886331 1 246889999886 8999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 245 l~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
++.-|.++.. .++|+.|+..|++|++++|+|
T Consensus 294 LyRrG~A~l~-~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 294 LYRRGQALLA-LGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHhCCCc
Confidence 9999999999 999999999999999999987
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.80 E-value=5.3e-08 Score=85.71 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH---
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVR--------GDFAKAEELCGRAILANPSDGNIL--- 245 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~---al~nLA~lL~e~~--------Gd~eeA~e~~ekALeldP~n~~al--- 245 (277)
...+...+++++|+..|+++++.+|+++. +++.+|.++. .. +++++|+++|++++..+|++..++
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY-NQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH-HhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 35677789999999999999999998876 6888898886 43 789999999999999999987553
Q ss_pred --------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 246 --------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 246 --------------~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..+|.+++. .|++++|+..|+++++..|++
T Consensus 156 ~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 156 KRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCC
Confidence 356788888 999999999999999998874
No 62
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.7e-08 Score=100.01 Aligned_cols=97 Identities=22% Similarity=0.223 Sum_probs=89.3
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA 249 (277)
..+|.+++..++++++|++.|.+||++.|. ++..+.+.|.++....+|+..|+.++++|+++||..-.++..||
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tla 544 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLA 544 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 357888999999999999999999999999 88888888877766789999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 250 DLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yekALeld 273 (277)
.+.++ +++.++|+++|++++.+.
T Consensus 545 q~~lQ-~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 545 QFELQ-RGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHH-HhhHHHHHHHHHHHHHHH
Confidence 99999 999999999999998764
No 63
>PRK11906 transcriptional regulator; Provisional
Probab=98.79 E-value=2.3e-08 Score=98.58 Aligned_cols=87 Identities=9% Similarity=0.112 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
.+..+|..+.++|+++||+|+.++..+|.++. ..++++.|...|++|+.++|+.+.+++..|+++.. .|+.++|++.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45678999999999999999999999999887 67889999999999999999999999999999998 99999999999
Q ss_pred HHHHHhCCC
Q 023753 267 DQAVKSAPD 275 (277)
Q Consensus 267 ekALeldPd 275 (277)
++|++++|.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 999999995
No 64
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.79 E-value=6.8e-08 Score=90.35 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=85.4
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
.+...+...+++++|+.+|+++++.+|.+ ..++..++.+|. ..+++++|+.+++++++.+|+...+ ..++.++.. .
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~-~ 295 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ-ALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEE-Q 295 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHH-h
Confidence 34467778899999999999999999987 466788888887 7899999999999999999987655 889999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 023753 257 KDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 257 Gd~deAi~~yekALeldPdD 276 (277)
|++++|+.+|+++++.+|++
T Consensus 296 g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 296 EGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred CCHHHHHHHHHHHHHhCcCH
Confidence 99999999999999999985
No 65
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=3.8e-08 Score=85.51 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=89.5
Q ss_pred CcchhhHHHHHH--hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 173 SGFSGSNNNYSN--NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 173 ~~~~~yY~~m~e--~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
+..+..|+..+. ..|++++|+..|+-....||.|+.+|..||.++. ..++|++|+.+|..|..++++||...++.|.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 445666776655 3699999999999999999999999999999996 8999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 023753 251 LIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 251 ll~~~~Gd~deAi~~yekALel 272 (277)
|++. .++.+.|+.+|+.++..
T Consensus 114 C~l~-l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 114 CQLL-MRKAAKARQCFELVNER 134 (165)
T ss_pred HHHH-hCCHHHHHHHHHHHHhC
Confidence 9999 99999999999999883
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.78 E-value=5.5e-08 Score=101.35 Aligned_cols=95 Identities=22% Similarity=0.318 Sum_probs=89.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
+...+.|++++|+..+..+|+++|.++.+|+.||.+|. ..||.++|..++-.|..++|.|...|..++....+ ++.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHH
Confidence 33445699999999999999999999999999999985 89999999999999999999999999999999988 99999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 023753 261 RAESYFDQAVKSAPDDW 277 (277)
Q Consensus 261 eAi~~yekALeldPdD~ 277 (277)
+|+-+|.+||+.+|.+|
T Consensus 225 qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNW 241 (895)
T ss_pred HHHHHHHHHHhcCCcch
Confidence 99999999999999987
No 67
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.76 E-value=5.5e-08 Score=97.75 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=81.6
Q ss_pred CcchhhHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------------------------
Q 023753 173 SGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLK------------------------------ 218 (277)
Q Consensus 173 ~~~~~yY~~m~e~----~Gd~deAi~~yekALeldP~n~~al~nLA~lL~------------------------------ 218 (277)
++++.|++..... ..++.+|+.+|++|+++||+++.++..++.++.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 5566666653332 134779999999999999999877766554321
Q ss_pred -------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 219 -------------EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 219 -------------e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
...+++++|+.+|++|+.++| +..+|..+|.++.. .|++++|+++|++|++++|.+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCC
Confidence 123589999999999999999 57899999999988 999999999999999999985
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=6.8e-08 Score=89.43 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=82.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHc
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYADLIWQAH 256 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~----al~~LA~ll~~~~ 256 (277)
..+...|++++|+..|+++++++|+++.++..+|.+++ ..|++++|+.++++++...|.++. .+..+|.++.. .
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-R 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-C
Confidence 46677899999999999999999999999999999997 799999999999999999875443 35578999998 9
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 023753 257 KDASRAESYFDQAVKSAP 274 (277)
Q Consensus 257 Gd~deAi~~yekALeldP 274 (277)
|++++|+.+|++++...|
T Consensus 200 G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 999999999999987766
No 69
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.76 E-value=3.6e-08 Score=71.83 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=57.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..+|. ..+++++|++++++++.++|+++.++..+|.+++. .|++++|+..|+++++..|++
T Consensus 2 ~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCc
Confidence 34565 78999999999999999999999999999999999 999999999999999999986
No 70
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.7e-08 Score=95.80 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=87.8
Q ss_pred CcchhhHHHHHHhCC-----------------CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 173 SGFSGSNNNYSNNNH-----------------GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (277)
Q Consensus 173 ~~~~~yY~~m~e~~G-----------------d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL 235 (277)
+-...||+.++.-+. +...|+..|++|++++|.|..+|+.+|+.|. ..+-..=|+-||++|+
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHH
Confidence 344556766665554 4458999999999999999999999999996 7898999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 236 eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
++.|+|+..|..||.||.. .++.++|+++|.+|+...-
T Consensus 426 ~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred hcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhccc
Confidence 9999999999999999988 9999999999999998753
No 71
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.74 E-value=5.4e-08 Score=85.80 Aligned_cols=87 Identities=22% Similarity=0.204 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-- 257 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~---------Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-- 257 (277)
++.|.+.++.+...||.|+.+++++|.+|.+.. .-+++|+.-|++||.++|+..++++++|.+|.. ++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence 568999999999999999999999998876321 246789999999999999999999999999876 43
Q ss_pred ---------CHHHHHHHHHHHHHhCCCC
Q 023753 258 ---------DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 ---------d~deAi~~yekALeldPdD 276 (277)
-|++|..+|++|++.+|+|
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3789999999999999986
No 72
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.74 E-value=5.8e-08 Score=83.83 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=71.4
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753 199 MIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 199 ALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~ 277 (277)
...++ ++.-..++.+|..++ ..|++++|+..|+.+..+||.++..|++||.++.. +|++++|+..|.+|+.++|+|+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCc
Confidence 34567 778889999999887 79999999999999999999999999999999988 9999999999999999999984
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.69 E-value=9.8e-08 Score=86.74 Aligned_cols=98 Identities=23% Similarity=0.204 Sum_probs=78.0
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
..+..++...++++++...++++.+.. +.++.+|..+|.++. ..|+.++|+.+|++|++++|+|+.++..+++++..
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID 192 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 345566777899999999999988766 678999999999886 89999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 023753 255 AHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeldPdD 276 (277)
.|++++|.+.++...+..|+|
T Consensus 193 -~~~~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 193 -MGDYDEAREALKRLLKAAPDD 213 (280)
T ss_dssp -TCHHHHHHHHHHHHHHH-HTS
T ss_pred -CCChHHHHHHHHHHHHHCcCH
Confidence 999999888888887776554
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.67 E-value=4.2e-08 Score=70.51 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=53.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..|++++|+++|++++..+|++..+++.+|.+|+. .|++++|+.++++++..+|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCH
Confidence 57999999999999999999999999999999999 999999999999999999984
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.1e-07 Score=94.80 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=88.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
++....++++.|+.+|..||.++|.|-..+.|...+|. ..++|++|+.--.+.++++|+-+..|..+|..++- .|+|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHH
Confidence 44556799999999999999999999999999988886 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+..|.+.|+.+|+|
T Consensus 88 eA~~ay~~GL~~d~~n 103 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSN 103 (539)
T ss_pred HHHHHHHHHhhcCCch
Confidence 9999999999999986
No 76
>PRK11906 transcriptional regulator; Provisional
Probab=98.64 E-value=1.8e-07 Score=92.48 Aligned_cols=103 Identities=14% Similarity=0.051 Sum_probs=87.9
Q ss_pred Ccc--hhhHHHHHHh----CCCcHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHH
Q 023753 173 SGF--SGSNNNYSNN----NHGSSSTDAYYEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAI 235 (277)
Q Consensus 173 ~~~--~~yY~~m~e~----~Gd~deAi~~yekAL---eldP~n~~al~nLA~lL~e~--------~Gd~eeA~e~~ekAL 235 (277)
++| +.|.+.+... ....+.|..+|.+|+ ++||+++.++..+|.+++.. ..+..+|.++.++|+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666655552 245678999999999 99999999999999887632 235678999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 236 eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+++|.|+.++..+|.+++. .++++.|+..|++|+.++|+.
T Consensus 332 eld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 332 DITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred hcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCcc
Confidence 9999999999999999999 899999999999999999985
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.3e-07 Score=93.13 Aligned_cols=90 Identities=16% Similarity=0.327 Sum_probs=77.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHH-----------------------------------------HHHHHHHHHHHcCC
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALL-----------------------------------------LGNYARFLKEVRGD 223 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~a-----------------------------------------l~nLA~lL~e~~Gd 223 (277)
..+++.-|..+|.+|+.+.|.+|.+ +.|+|.++. +.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhh
Confidence 3567778888888888888888753 456666665 6788
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 224 ~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+++|+.+|++||.+.|.++.++..+|.+|.. +|+++.|+++|.+||.++|+|
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999998 999999999999999999987
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=3.4e-07 Score=76.11 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=74.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
...++...|++++|+..|++++...|++ +.+.+.+|.++. ..+++++|+..++. +.-.+-.+.++..+|.++..
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~- 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA- 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-
Confidence 3466667899999999999999988766 457888898886 78999999999966 44456677788889999999
Q ss_pred cCCHHHHHHHHHHHH
Q 023753 256 HKDASRAESYFDQAV 270 (277)
Q Consensus 256 ~Gd~deAi~~yekAL 270 (277)
.|++++|+..|++||
T Consensus 131 ~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 131 QGDYDEARAAYQKAL 145 (145)
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999999885
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=3.6e-07 Score=84.33 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=88.7
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
-+.+.+...|+-+.+..+..++...+|.+..++..+|..+. ..|+|..|+..+++|..++|+|..+|..+|.+|.+ .|
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~G 148 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LG 148 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-cc
Confidence 35556666788888899999999999999999988998886 89999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
++++|...|.+|+++.|++
T Consensus 149 r~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 149 RFDEARRAYRQALELAPNE 167 (257)
T ss_pred ChhHHHHHHHHHHHhccCC
Confidence 9999999999999999986
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.59 E-value=2.9e-07 Score=94.90 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=87.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e--~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
.++...+...+|.+.|..|+.+||+++.....+|.++. ..|+..-|.. .+..|+++||.|+.+|+++|.++.. .||
T Consensus 692 ~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd 769 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGD 769 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccc
Confidence 56677899999999999999999999999999999996 7887777777 9999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 023753 259 ASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 259 ~deAi~~yekALeldPdD~ 277 (277)
.++|.++|+.|+++++.++
T Consensus 770 ~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEESNP 788 (799)
T ss_pred hHHHHHHHHHHHhhccCCC
Confidence 9999999999999998763
No 81
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=3.3e-07 Score=64.52 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+++++|.++. ..+++++|+.+|+++++..|.+..++..+|.++.. .+++++|+.+|++++++.|.+
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcc
Confidence 5778898887 78999999999999999999999999999999999 999999999999999998875
No 82
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.55 E-value=1.4e-07 Score=90.79 Aligned_cols=93 Identities=18% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
-|..+|.|++|+.||.++|.++|.|+..+.|.|.+|+ +.+.|..|+.-|+.||.+|.....+|..-+.+... +|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHH
Confidence 3556799999999999999999999999999999997 89999999999999999999999999999998888 999999
Q ss_pred HHHHHHHHHHhCCCC
Q 023753 262 AESYFDQAVKSAPDD 276 (277)
Q Consensus 262 Ai~~yekALeldPdD 276 (277)
|.+-++.+|++.|++
T Consensus 184 AKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 184 AKKDCETVLALEPKN 198 (536)
T ss_pred HHHhHHHHHhhCccc
Confidence 999999999999985
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=7.5e-07 Score=88.15 Aligned_cols=89 Identities=16% Similarity=0.155 Sum_probs=80.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
.+++++|+..++..+...|+|+.++-..+.++. ..++.++|++.+++|+.++|+.+....++|.+|++ .|++++|+.+
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~ 396 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRI 396 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHH
Confidence 488899999999999999999999888888886 78899999999999999999998889999999998 8999999999
Q ss_pred HHHHHHhCCCC
Q 023753 266 FDQAVKSAPDD 276 (277)
Q Consensus 266 yekALeldPdD 276 (277)
+++.+..+|+|
T Consensus 397 L~~~~~~~p~d 407 (484)
T COG4783 397 LNRYLFNDPED 407 (484)
T ss_pred HHHHhhcCCCC
Confidence 99999998887
No 84
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.54 E-value=2.2e-06 Score=70.77 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=79.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQ 254 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~ 254 (277)
.++...|+.++|+.+|++|++..... ..++..+|..|. ..|++++|+..+++++...|+ +..+...++.+++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 56677899999999999999986655 468889999997 899999999999999999898 88888889999999
Q ss_pred HcCCHHHHHHHHHHHHH
Q 023753 255 AHKDASRAESYFDQAVK 271 (277)
Q Consensus 255 ~~Gd~deAi~~yekALe 271 (277)
.|+.++|+..+-.++.
T Consensus 88 -~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 -LGRPKEALEWLLEALA 103 (120)
T ss_pred -CCCHHHHHHHHHHHHH
Confidence 9999999999888775
No 85
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=1.1e-07 Score=70.31 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---P-S---DGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld---P-~---n~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+-+.++.++|.+|. ..+++++|+.+|++|+++. + + -+.++.++|.++.. .|++++|+++|++|+++.
T Consensus 3 ~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhh
Confidence 34578899999997 8999999999999999762 2 2 25578899999999 999999999999999863
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3e-07 Score=92.35 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 189 ~deAi~~yekALeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
+..-.++|..|...+| .++.+...||.+|+ ..++|++|+.||+.||..+|+|...|+.||..+.+ ..+.++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHH
Confidence 3456788899999999 79999999999888 78999999999999999999999999999999999 89999999999
Q ss_pred HHHHHhCCCC
Q 023753 267 DQAVKSAPDD 276 (277)
Q Consensus 267 ekALeldPdD 276 (277)
++|+++.|..
T Consensus 488 ~rALqLqP~y 497 (579)
T KOG1125|consen 488 NRALQLQPGY 497 (579)
T ss_pred HHHHhcCCCe
Confidence 9999999975
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.51 E-value=8.1e-07 Score=93.85 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=71.9
Q ss_pred hhHHHHHH-hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 177 GSNNNYSN-NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 177 ~yY~~m~e-~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
.|-+.++. .+|+++.|+..|+++++.+|+++.+...++.++. ..|++++|+.++++++.-+|.....+..+|.++..
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~- 114 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN- 114 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-
Confidence 34444433 3599999999999999999999644447776665 67888888888888883333444444444667877
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD 276 (277)
+|++++|+++|+++++.+|++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n 135 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTN 135 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCC
Confidence 888888888888888888876
No 88
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=8.8e-07 Score=82.02 Aligned_cols=89 Identities=16% Similarity=0.237 Sum_probs=66.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK---DASRA 262 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G---d~deA 262 (277)
+|..-+|++.+..-++..++|.++|..++.+|. ..++|++|.-||++.+-+.|.++..+..||.+++- +| +++-|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 455556666666666666777777888887776 67888888888888888888888888888888776 54 45578
Q ss_pred HHHHHHHHHhCCCC
Q 023753 263 ESYFDQAVKSAPDD 276 (277)
Q Consensus 263 i~~yekALeldPdD 276 (277)
.+||.+|++++|.+
T Consensus 211 rkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 211 RKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHhChHh
Confidence 88888888888754
No 89
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.49 E-value=8.4e-07 Score=75.11 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---n~~al~~LA~ll~~~~Gd~de 261 (277)
.++..+...+.+.++.++.+ ..+++++|.++. ..+++++|+.+|++|+.+.|+ .+.++.++|.++.. .|++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e 90 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK 90 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence 55777778887777777776 567799998886 789999999999999999776 34589999999999 999999
Q ss_pred HHHHHHHHHHhCCCC
Q 023753 262 AESYFDQAVKSAPDD 276 (277)
Q Consensus 262 Ai~~yekALeldPdD 276 (277)
|+.+|++|++++|..
T Consensus 91 A~~~~~~Al~~~~~~ 105 (168)
T CHL00033 91 ALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHhCcCc
Confidence 999999999998864
No 90
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.49 E-value=1e-06 Score=85.20 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCG--RAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~--~al~nLA~lL~e~~Gd~eeA~e~~e--kALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
+.+++++.++++++.+|+|+ .++..||++++ ..+++++|.++|+ ++++.+|++.. +..+|.++++ .|+.++|.
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~-~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-~g~~~~A~ 390 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM-KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-AGDKAEAA 390 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-cCCHHHHH
Confidence 34445555555555555555 44445555444 4455555555555 34444444433 2245555555 55555555
Q ss_pred HHHHHHH
Q 023753 264 SYFDQAV 270 (277)
Q Consensus 264 ~~yekAL 270 (277)
++|++++
T Consensus 391 ~~~~~~l 397 (409)
T TIGR00540 391 AMRQDSL 397 (409)
T ss_pred HHHHHHH
Confidence 5555543
No 91
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=1.1e-06 Score=81.37 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=90.3
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
.-.+.-.+++.+.+++|+++|+..|+-||.|..++-..-.++. .+|+.-+|++.+..-++.-++|+++|..++.+|+.
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~- 166 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS- 166 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-
Confidence 3456677888999999999999999999999988876666675 78988999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD 276 (277)
.++|++|.-+|++.+-++|.+
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999976
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.47 E-value=1e-06 Score=81.65 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ye 267 (277)
....+...++.....+|....++..+|.++. ..|++++|+..++++++++|+++.++..+|.+++. .|++++|+.+|+
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~ 172 (355)
T cd05804 95 MRDHVARVLPLWAPENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFME 172 (355)
T ss_pred CchhHHHHHhccCcCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3344444444444566667777777887776 78999999999999999999999999999999999 999999999999
Q ss_pred HHHHhCCC
Q 023753 268 QAVKSAPD 275 (277)
Q Consensus 268 kALeldPd 275 (277)
+++...|.
T Consensus 173 ~~l~~~~~ 180 (355)
T cd05804 173 SWRDTWDC 180 (355)
T ss_pred hhhhccCC
Confidence 99998774
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.47 E-value=1.1e-06 Score=84.09 Aligned_cols=74 Identities=14% Similarity=0.024 Sum_probs=68.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
..++...+++++|+.+|++|++++|+++.+++++|.+|+ ..|+|++|+.+|++|++++|+++.+...++.+...
T Consensus 43 a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~-~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 43 AQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM-KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 356677899999999999999999999999999999997 89999999999999999999999999998888655
No 94
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=6.1e-07 Score=84.35 Aligned_cols=78 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.+|...|.++.|++.++.||.+||.+..+|..||.+|. .+|++++|+++|++||+++|+|..+..+|..+-.. .++..
T Consensus 123 AAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~-~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~-l~e~~ 200 (304)
T KOG0553|consen 123 AAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL-ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK-LNEPK 200 (304)
T ss_pred HHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH-ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH-hcCCC
Confidence 55666799999999999999999999999999999997 89999999999999999999999999998877655 54443
No 95
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.3e-06 Score=81.96 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--DASRAESY 265 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G--d~deAi~~ 265 (277)
..++.+.-++.-|+.||+|+.-|..||.+|. ..+++..|...|.+|+++.|+|++++..+|.+++...+ +-.+|...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 4678889999999999999999999999997 89999999999999999999999999999999887333 34689999
Q ss_pred HHHHHHhCCCCC
Q 023753 266 FDQAVKSAPDDW 277 (277)
Q Consensus 266 yekALeldPdD~ 277 (277)
|++|++++|+|.
T Consensus 216 l~~al~~D~~~i 227 (287)
T COG4235 216 LRQALALDPANI 227 (287)
T ss_pred HHHHHhcCCccH
Confidence 999999999873
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.43 E-value=1.6e-06 Score=83.75 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=83.4
Q ss_pred cchhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Q 023753 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPSDG--NILSLYAD 250 (277)
Q Consensus 174 ~~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al-~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~--~al~~LA~ 250 (277)
.....+...+...|++++|+..++++++..|++.... ..+-.+.....++.+++++.++++++.+|+|+ .++..+|+
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~ 343 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQ 343 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 3445666788889999999999999999999998531 11111111235789999999999999999999 89999999
Q ss_pred HHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 023753 251 LIWQAHKDASRAESYFD--QAVKSAPDD 276 (277)
Q Consensus 251 ll~~~~Gd~deAi~~ye--kALeldPdD 276 (277)
+++. .+++++|.++|+ ++++..|++
T Consensus 344 l~~~-~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 344 LLMK-HGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHH-cccHHHHHHHHHHhHHhhcCCCH
Confidence 9999 999999999999 688888874
No 97
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.42 E-value=1.1e-06 Score=74.94 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=66.4
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 196 YEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAV 270 (277)
Q Consensus 196 yekALeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekAL 270 (277)
+.+.+.+++ ..+.+++++|.++. ..+++++|+.+|++|+.+.|+. ..++..+|.++.. .|++++|+.+|++|+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al 99 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 344444443 45677899999886 7899999999999999988764 4689999999999 999999999999999
Q ss_pred HhCCCC
Q 023753 271 KSAPDD 276 (277)
Q Consensus 271 eldPdD 276 (277)
++.|++
T Consensus 100 ~~~p~~ 105 (172)
T PRK02603 100 ELNPKQ 105 (172)
T ss_pred HhCccc
Confidence 999975
No 98
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.42 E-value=2.3e-06 Score=66.13 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+.+++.+|..+. ..+++++|+.+|++++..+|++ +.+++.+|.+++. .+++++|+.+|++++..+|++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCC
Confidence 456788998886 7999999999999999999987 5788999999999 999999999999999999874
No 99
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.42 E-value=2.1e-06 Score=82.93 Aligned_cols=84 Identities=13% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
++.+++++.+++.++.+|+|+..+..+|.++. ..+++++|.++|+++++++|++.. +..++.++.. +|+.++|..+|
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~-~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-~g~~~~A~~~~ 384 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM-KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-LHKPEEAAAMR 384 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-cCCHHHHHHHH
Confidence 77889999999999999999999999999886 789999999999999999998765 4468888888 99999999999
Q ss_pred HHHHHhC
Q 023753 267 DQAVKSA 273 (277)
Q Consensus 267 ekALeld 273 (277)
++++.+.
T Consensus 385 ~~~l~~~ 391 (398)
T PRK10747 385 RDGLMLT 391 (398)
T ss_pred HHHHhhh
Confidence 9998764
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.41 E-value=8.1e-07 Score=85.55 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=90.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
.+..+.+++++..|+..|-.|++.||+|..+++..|.+|. ..|+-..|+.-+.++|++.|+...+...-|.+++. +|+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-ccc
Confidence 4466677899999999999999999999999999999986 89999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
+++|+.-|+++|+.+|++
T Consensus 122 le~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN 139 (504)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 999999999999999965
No 101
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=3.5e-06 Score=83.51 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=77.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++...++.++|++.+++++.++|+.+..+.+||.+|. +.|++.+|+.++++.+..+|+|+..|..||..|-. +|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchH
Confidence 56667799999999999999999999999999999997 89999999999999999999999999999998877 77655
Q ss_pred HHHHHHHHHHH
Q 023753 261 RAESYFDQAVK 271 (277)
Q Consensus 261 eAi~~yekALe 271 (277)
+|...+..+..
T Consensus 426 ~a~~A~AE~~~ 436 (484)
T COG4783 426 EALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 102
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=3.1e-06 Score=76.60 Aligned_cols=92 Identities=22% Similarity=0.272 Sum_probs=82.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
+..+|+|++|..-|..||++-|.-+ ..+.|.|.++. +.+..+.|+..+.+||+++|.+-.++..-|.+|-+ +.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-ME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hh
Confidence 3457899999999999999999864 45667787775 88999999999999999999999999999999999 89
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
.|++|+.-|++.++++|..
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 9999999999999999963
No 103
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.35 E-value=5.7e-06 Score=76.85 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=87.4
Q ss_pred hHHHHHHh--CCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 023753 178 SNNNYSNN--NHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA 249 (277)
Q Consensus 178 yY~~m~e~--~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA 249 (277)
.|..++.. .++|..|+..|+.-|+..|+. +.++|.||.+++ .+|+|+.|...|..+++-.|+. |++++-+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56655553 588999999999999999997 588999999998 8999999999999999998864 68899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 250 DLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.++.. +++.++|...|+++++..|+.
T Consensus 223 ~~~~~-l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGR-LGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHH-hcCHHHHHHHHHHHHHHCCCC
Confidence 99999 999999999999999999974
No 104
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=2e-06 Score=86.47 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=86.5
Q ss_pred CCcchhhHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 023753 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------ 237 (277)
Q Consensus 172 ~~~~~~yY~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel------ 237 (277)
...+..+...+|...+++++|+..|++|+++ .|.-...+.++|.+|. ..++|.+|+..|++|+.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~-~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR-SLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHhcC
Confidence 3445667889999999999999999999999 6666666777999886 899999999999999987
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 238 --NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 238 --dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+|.-+.++.+||.+|.. .|+|++|..++++|+++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIY 313 (508)
T ss_pred CCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHH
Confidence 44556679999999999 999999999999999873
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.34 E-value=4e-06 Score=80.99 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=83.9
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
...|...+...|+.++|...++++++. |.++.....++.+ ..+++++|++.+++.++..|+|+..+..+|.++..
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~- 340 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK- 340 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-
Confidence 345667777889999999999999995 5566666666654 34899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD 276 (277)
.+++++|+++|+++++..|++
T Consensus 341 ~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 341 HGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCH
Confidence 999999999999999999985
No 106
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.4e-06 Score=85.27 Aligned_cols=92 Identities=20% Similarity=0.171 Sum_probs=82.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
....+|.+.+|.++|..||.+||+|. ..|.|.|.+.. ..|+..+|+.-++.|+++||....++..-|.|+.. .+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HH
Confidence 34457899999999999999999974 56778888886 89999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 023753 258 DASRAESYFDQAVKSAPD 275 (277)
Q Consensus 258 d~deAi~~yekALeldPd 275 (277)
++++|++.|++|+++.-+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987643
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.34 E-value=7.1e-06 Score=86.79 Aligned_cols=104 Identities=14% Similarity=0.078 Sum_probs=94.1
Q ss_pred CCCcchhhHH---HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023753 171 GGSGFSGSNN---NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (277)
Q Consensus 171 g~~~~~~yY~---~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~ 247 (277)
.++.+..++. ..+...|++.+|++.+++.+...|.|+.++..+|.++. ..|++.+|++.+++++.++|++..+...
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~-~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL-ARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 3555665544 33445699999999999999999999999999999997 8999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 248 YADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 248 LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+|.++.. ++++++|....+.+++..|++
T Consensus 490 ~~~~al~-l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 490 QAETAMA-LQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHHHh-hhhHHHHHHHHHHHHhhCCCc
Confidence 9999999 999999999999999999987
No 108
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=5.4e-06 Score=81.06 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=65.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++...++++.|+..|++..+.+|+ +...+|.++. ..++..+|++.+.++++.+|.+...+...|.+++. .++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHH
Confidence 3444567778788877777777765 3344566665 46667777777777777777777777777777777 77777
Q ss_pred HHHHHHHHHHHhCCCCC
Q 023753 261 RAESYFDQAVKSAPDDW 277 (277)
Q Consensus 261 eAi~~yekALeldPdD~ 277 (277)
.|+.+.++|+++.|+++
T Consensus 252 lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEF 268 (395)
T ss_pred HHHHHHHHHHHhCchhH
Confidence 77777777777777753
No 109
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1e-06 Score=87.25 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=86.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
....+|++++|.+.|+.||..|..-..+++|+|..+. ..+++++|+++|-+.-.+--+++++++.+|.+|-. +.+..+
T Consensus 499 ~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aq 576 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQ 576 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHH
Confidence 3445789999999999999999999999999998885 89999999999999988888999999999999988 999999
Q ss_pred HHHHHHHHHHhCCCCC
Q 023753 262 AESYFDQAVKSAPDDW 277 (277)
Q Consensus 262 Ai~~yekALeldPdD~ 277 (277)
|+++|-++..+-|+|+
T Consensus 577 aie~~~q~~slip~dp 592 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDP 592 (840)
T ss_pred HHHHHHHhcccCCCCH
Confidence 9999999999999874
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=1.6e-06 Score=89.13 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=87.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
..+..+++|.+|..+++..++++|-....|+++|.+.. +.+++..|.++|.+++.++|++..+|++++..|.. .++-.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ 570 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKK 570 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhH
Confidence 33445689999999999999999999999999998886 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCC
Q 023753 261 RAESYFDQAVKSAPDDW 277 (277)
Q Consensus 261 eAi~~yekALeldPdD~ 277 (277)
+|-..+++|++.+-.+|
T Consensus 571 ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHHHHHHHHhhcCCCCC
Confidence 99999999999987665
No 111
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.6e-06 Score=79.81 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
...|+.|+.+|-+||.++|..+.++.|-|.++. +.++++.+.+-+++|++++|+-..+++.+|.++.+ ...|++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHHH
Confidence 467889999999999999999999999999886 79999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHh
Q 023753 266 FDQAVKS 272 (277)
Q Consensus 266 yekALel 272 (277)
+.+|..+
T Consensus 101 Lqra~sl 107 (284)
T KOG4642|consen 101 LQRAYSL 107 (284)
T ss_pred HHHHHHH
Confidence 9999654
No 112
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.25 E-value=9.9e-06 Score=84.90 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=89.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
.+..|+.+|+.++|...+-.|-.++|.+...|..++.... .++++.+|.-||.+||..+|.+-...+..+.+|.+ +|+
T Consensus 179 L~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~ 256 (895)
T KOG2076|consen 179 LGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGD 256 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hCh
Confidence 3478888899999999999999999999999999999775 89999999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 023753 259 ASRAESYFDQAVKSAPD 275 (277)
Q Consensus 259 ~deAi~~yekALeldPd 275 (277)
..+|...|.+++++.|.
T Consensus 257 ~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 257 LKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHHHHHHHhhCCc
Confidence 99999999999999983
No 113
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.25 E-value=4.5e-06 Score=88.03 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=51.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-- 257 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-- 257 (277)
+++.++|+|++|..||.++++.+|++ ...++.+|.++. ..++++.|+.+|++.++..|++...+..+|.+|.. .+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhh
Confidence 45555555555555555555555555 445555555553 55555555555555555555555555555555544 21
Q ss_pred --CHHHHHHHHHHHHHhCCCC
Q 023753 258 --DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 --d~deAi~~yekALeldPdD 276 (277)
..++|..++.++++..|.|
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred hHHHHHHHHHHHHHHhccccc
Confidence 3355555555555555543
No 114
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=1.1e-05 Score=78.83 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=78.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
+++...++..+|+..+.++|+.+|.++..+...|.+|. ..++++.|+.++++|+.+.|++...|+.||.+|.. .|+++
T Consensus 208 ~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e 285 (395)
T PF09295_consen 208 RVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFE 285 (395)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHH
Confidence 34444566679999999999999999999999999997 89999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHH
Q 023753 261 RAESYFDQA 269 (277)
Q Consensus 261 eAi~~yekA 269 (277)
+|+..++.+
T Consensus 286 ~ALlaLNs~ 294 (395)
T PF09295_consen 286 NALLALNSC 294 (395)
T ss_pred HHHHHHhcC
Confidence 999877643
No 115
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.22 E-value=2.2e-05 Score=71.67 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=79.5
Q ss_pred chhhHHHHHH--hCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 023753 175 FSGSNNNYSN--NNHGSSSTDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILS 246 (277)
Q Consensus 175 ~~~yY~~m~e--~~Gd~deAi~~yekALeldP~n~~al---~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~ 246 (277)
....|..... ..+++++|+..|++++...|..+.+. +.+|.+++ ..+++++|+.+|++.++..|++ +.+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3445553333 35999999999999999999987654 88999998 8999999999999999999976 45677
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCC
Q 023753 247 LYADLIWQAHK---------------D---ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 247 ~LA~ll~~~~G---------------d---~deAi~~yekALeldPdD 276 (277)
.+|.++.. .+ | ..+|+..|++.|+..|+.
T Consensus 111 ~~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 111 MRGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred HHHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 88876533 22 2 357889999999999974
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=3.2e-05 Score=64.20 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=75.8
Q ss_pred hHHHHHHh--CCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 023753 178 SNNNYSNN--NHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA 249 (277)
Q Consensus 178 yY~~m~e~--~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA 249 (277)
.|..++.. .++...+...+++.+..+|+. ..+.+.+|.+++ ..|++++|+..|++++...|++ +.+...+|
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444443 588889999999999999999 467778899887 7899999999999999988765 45788899
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 023753 250 DLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yek 268 (277)
.+++. .+++++|+..++.
T Consensus 93 ~~~~~-~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQ-QGQYDEALATLQQ 110 (145)
T ss_pred HHHHH-cCCHHHHHHHHHh
Confidence 99999 9999999999976
No 117
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.19 E-value=6.5e-06 Score=82.86 Aligned_cols=94 Identities=24% Similarity=0.274 Sum_probs=79.1
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PSD 241 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALel--------dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--------P~n 241 (277)
-+..+|...+.+.+|+..|++|+.+ +|.-+.++.+||.+|. ..|+|++|..||++|++|- |.-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 3566777889999999999999987 3444678999999997 8999999999999999873 233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+..+.+++.++.. ++++++|+.+|++++++.
T Consensus 325 ~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 325 AAQLSELAAILQS-MNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHHHHHH-hcchhHHHHHHHHHHHHH
Confidence 4557788888888 999999999999999863
No 118
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.18 E-value=6.3e-06 Score=81.53 Aligned_cols=60 Identities=18% Similarity=0.027 Sum_probs=54.1
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILAN 238 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~a---l~nLA~lL~e~~Gd~eeA~e~~ekALeld 238 (277)
.++.++...++|++|+.+|++||+++|+++.+ |+|+|.+|. .+|++++|+++|++|+++.
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya-~LGr~dEAla~LrrALels 142 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA-YREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Confidence 34467778899999999999999999999854 999999997 8999999999999999983
No 119
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-05 Score=78.47 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
+++.+|+.++.++|+++|+|.-++|..|.++. ..++|+.|+..|++|++++|+|..+...+..+........++..+.|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999997 79999999999999999999999999999888777333444568889
Q ss_pred HHHHHhCC
Q 023753 267 DQAVKSAP 274 (277)
Q Consensus 267 ekALeldP 274 (277)
.+++..-+
T Consensus 350 ~~mF~k~~ 357 (397)
T KOG0543|consen 350 ANMFAKLA 357 (397)
T ss_pred HHHhhccc
Confidence 88886544
No 120
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.16 E-value=2.5e-05 Score=66.56 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=83.4
Q ss_pred hhhHHHHHH--hCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 023753 176 SGSNNNYSN--NNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSL 247 (277)
Q Consensus 176 ~~yY~~m~e--~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~ 247 (277)
...|..... ..++|.+|++.|+......|..+ .+...++.+++ ..+++++|+..+++-|+++|+++ .+++.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345554443 35999999999999999998764 67888999998 89999999999999999999864 46888
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 023753 248 YADLIWQAHKD---------------ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 248 LA~ll~~~~Gd---------------~deAi~~yekALeldPdD 276 (277)
.|.+++. +.+ ..+|...|++.|+..|+.
T Consensus 90 ~gL~~~~-~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 90 RGLSYYE-QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHH-HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 8888888 665 789999999999999985
No 121
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=4.9e-06 Score=56.17 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
|.++..+|.+|. ..|++++|+++|+++++.+|+|+.++..+|.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457889999886 8999999999999999999999999998875
No 122
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.15 E-value=2e-06 Score=55.66 Aligned_cols=32 Identities=41% Similarity=0.577 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAE 228 (277)
Q Consensus 196 yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~ 228 (277)
|++||+++|+|+.+|++||.+|. ..|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence 45555555555555555555554 455555543
No 123
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.15 E-value=2.1e-06 Score=55.58 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 230 LCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 230 ~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
+|++||+++|+|+.+|++||.+|.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence 4899999999999999999999999 999999973
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-05 Score=78.97 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
++|.+.|+++|.++|....+...+|.++. ..|.+..++..+++++...|++ ..+..||.++.. .+.+++|..+|..|
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A-~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRA-QNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 68999999999999999999999999886 8999999999999999998866 568889999988 99999999999999
Q ss_pred HHhCCCC
Q 023753 270 VKSAPDD 276 (277)
Q Consensus 270 LeldPdD 276 (277)
+.++|+|
T Consensus 498 Lr~dP~~ 504 (564)
T KOG1174|consen 498 LRQDPKS 504 (564)
T ss_pred HhcCccc
Confidence 9999987
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=1.4e-05 Score=85.07 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAV 270 (277)
Q Consensus 191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekAL 270 (277)
.++.+|.+.+...+++-.|++.+|.+|. ..|++++|.+.|+++++++|+|+.++++||..|.. . ++++|+.++.+|+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV 176 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAI 176 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHH
Confidence 5666666666667777777777777764 67777777777777777777777777777777776 5 7777777777777
Q ss_pred Hh
Q 023753 271 KS 272 (277)
Q Consensus 271 el 272 (277)
+.
T Consensus 177 ~~ 178 (906)
T PRK14720 177 YR 178 (906)
T ss_pred HH
Confidence 64
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.11 E-value=1.3e-05 Score=85.16 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
+...|...+++++|.+.|+++|++||+|+.++++||.+|. .. ++++|++++.+|+.. +++ .++
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~a-e~-dL~KA~~m~~KAV~~--------------~i~-~kq 184 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYE-EE-DKEKAITYLKKAIYR--------------FIK-KKQ 184 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHHH--------------HHh-hhc
Confidence 3356667799999999999999999999999999999997 45 999999999999998 566 679
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 023753 259 ASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 259 ~deAi~~yekALeldPdD~ 277 (277)
|.++.+++.+.+..+|+|+
T Consensus 185 ~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred chHHHHHHHHHHhcCcccc
Confidence 9999999999999999874
No 127
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=3.4e-05 Score=65.91 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCC
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKD 258 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----~~al~~LA~ll~~~~Gd 258 (277)
+...++++.|++.|.++|.+-|.++.+|+|.|..+. .+++.++|+.-+++|+++.-.. ..++..-|.+|.. +|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCc
Confidence 334589999999999999999999999999999997 7999999999999999997543 4456677888887 999
Q ss_pred HHHHHHHHHHHHHh
Q 023753 259 ASRAESYFDQAVKS 272 (277)
Q Consensus 259 ~deAi~~yekALel 272 (277)
.+.|..-|+.|-++
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 99999999988765
No 128
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.09 E-value=2.2e-05 Score=75.12 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=85.5
Q ss_pred chhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (277)
Q Consensus 175 ~~~yY~~m~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA 249 (277)
.....-.+|....++++|++..++...+.+... .++..||..+. ...+.++|...+.+|++.||++..+-..+|
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 455666888889999999999999999988763 44556666554 567899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 250 DLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.++.. .|+|++|++.++++++.||+.
T Consensus 222 ~v~~~-~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 222 RVELA-KGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhChHH
Confidence 99999 999999999999999999863
No 129
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=5.2e-06 Score=79.68 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=72.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.+++..+++++|.++|+.+++++|.|.+++..+|.-|+ ..++.+-|+.||++.+.+--.+++.+.++|.|++. .+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchh
Confidence 56666778888888888888888888888777776665 57788888888888888888888888888888877 78888
Q ss_pred HHHHHHHHHHHhC
Q 023753 261 RAESYFDQAVKSA 273 (277)
Q Consensus 261 eAi~~yekALeld 273 (277)
-++..|++|+...
T Consensus 376 ~~L~sf~RAlsta 388 (478)
T KOG1129|consen 376 LVLPSFQRALSTA 388 (478)
T ss_pred hhHHHHHHHHhhc
Confidence 8888888887654
No 130
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.08 E-value=1.5e-05 Score=84.20 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi 263 (277)
..+..|...+.+|...+|.||.++..+|..++ ..++|..+...+..|+...-.. +..++.+|..+.. +|+|++|.
T Consensus 250 ~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha-~Gd~ekA~ 327 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA-QGDFEKAF 327 (1018)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh-hccHHHHH
Confidence 34455666666666666666665555555444 3455555555555554443222 2224445555544 55555555
Q ss_pred HHHHHHHHhCCCC
Q 023753 264 SYFDQAVKSAPDD 276 (277)
Q Consensus 264 ~~yekALeldPdD 276 (277)
.||.++++.+|++
T Consensus 328 ~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 328 KYYMESLKADNDN 340 (1018)
T ss_pred HHHHHHHccCCCC
Confidence 5555555555443
No 131
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.2e-05 Score=79.17 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=60.1
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
.-+.+.+|..+|-||..+||....+|..+|..+. ..+..++|+.+|.+|.++-|....-...+|.-|.. .+.++.|..
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHHHHH
Confidence 4578889999999999999999999998888765 55555555555555555555554444555555544 555555555
Q ss_pred HHHHHHHhCCCC
Q 023753 265 YFDQAVKSAPDD 276 (277)
Q Consensus 265 ~yekALeldPdD 276 (277)
+|.+|+.++|+|
T Consensus 402 Ff~~A~ai~P~D 413 (611)
T KOG1173|consen 402 FFKQALAIAPSD 413 (611)
T ss_pred HHHHHHhcCCCc
Confidence 555555555554
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.05 E-value=1.5e-05 Score=84.54 Aligned_cols=91 Identities=19% Similarity=0.100 Sum_probs=80.8
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAE 263 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~--~~Gd~deAi 263 (277)
+.+|++|++..+++++.||+|..++..+|.+++...++.++|.++|..|++++|++.-+|-.|+.+|.. ..-+++++-
T Consensus 15 nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~ 94 (1238)
T KOG1127|consen 15 NKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAA 94 (1238)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhH
Confidence 579999999999999999999999999999998544459999999999999999999999999998865 234678999
Q ss_pred HHHHHHHHhCCCC
Q 023753 264 SYFDQAVKSAPDD 276 (277)
Q Consensus 264 ~~yekALeldPdD 276 (277)
.+|++++-+.|++
T Consensus 95 ~~yq~~~l~le~q 107 (1238)
T KOG1127|consen 95 KCYQRAVLILENQ 107 (1238)
T ss_pred HHHHHHHHhhhhh
Confidence 9999999887763
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.02 E-value=7.7e-05 Score=65.74 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=72.9
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc-
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAH- 256 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~LA~ll~~~~- 256 (277)
...|++.+|+..|++++...|.. +.+++.+|.+++ ..+++++|+..|++.++..|+.+ .+++.+|.+++...
T Consensus 16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 35699999999999999999886 478899999998 89999999999999999999864 57888888876621
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCC
Q 023753 257 ---------KDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 257 ---------Gd~deAi~~yekALeldPdD 276 (277)
....+|+..|+..|+..|+.
T Consensus 95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred cchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 22358999999999999985
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.99 E-value=5.7e-05 Score=69.99 Aligned_cols=70 Identities=20% Similarity=0.125 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+...++..|..+....++|++|+..|++.++..|++ +.+++.+|.+|+. .+++++|+.+|+++++..|++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence 456667777655435799999999999999999998 5799999999999 999999999999999999985
No 135
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.99 E-value=4.7e-05 Score=72.89 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=82.5
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHH
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~~~Gd~deA 262 (277)
....+.++|+..+.||++.||++..+-..+|.+.. ..|+|++|++.++++++.||+. +.++..|..+|.+ .|+.++.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~ 268 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEG 268 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHH
Confidence 34578999999999999999999999999999886 8999999999999999999985 6688889999999 9999999
Q ss_pred HHHHHHHHHhCCC
Q 023753 263 ESYFDQAVKSAPD 275 (277)
Q Consensus 263 i~~yekALeldPd 275 (277)
+.++.++++.+++
T Consensus 269 ~~fL~~~~~~~~g 281 (389)
T COG2956 269 LNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHccCC
Confidence 9999999998775
No 136
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.98 E-value=1.9e-05 Score=49.33 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+++.+|.+++. +|++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence 455556666665 666666666666666666654
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=97.97 E-value=3.3e-05 Score=67.31 Aligned_cols=75 Identities=13% Similarity=-0.006 Sum_probs=67.5
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 201 eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~ 277 (277)
.+.++.-...+.+|.-++ ..|++++|+..|+-+...+|.|+.++..||.++.. +++|++|+..|..|..++++|+
T Consensus 31 gis~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCC
Confidence 345555677888888777 79999999999999999999999999999999988 9999999999999999998874
No 138
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.95 E-value=1.5e-05 Score=58.89 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=48.9
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEAN----PGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeld----P~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
.+..++...+++++|+.+|++|+++. +++ +.+++++|.++. ..|++++|+++|++|+++
T Consensus 10 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 45577788999999999999999762 222 567899999997 899999999999999986
No 139
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.6e-05 Score=75.02 Aligned_cols=98 Identities=20% Similarity=0.216 Sum_probs=86.0
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------------------------------C
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR----------------------------------G 222 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~----------------------------------G 222 (277)
....+.+...|++.+|+..|+++.-+||.+....-.||.++. .. +
T Consensus 236 ~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~-~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 236 MALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG-QEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK 314 (564)
T ss_pred HHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH-hccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh
Confidence 344566667899999999999999999999988888887764 23 3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 223 DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 223 d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
++..|+.+-+|+|..+|++..++...|.++.+ .++.++|+-.|+.|+.+.|-+
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhh
Confidence 78889999999999999999999999999999 999999999999999998854
No 140
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.93 E-value=3.4e-05 Score=71.55 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=64.6
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
.+.....+..+.|...|++|++..+-...+|..+|.+-+...++.+.|...|+++++.-|.+..+|..|..++.. .++.
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~ 86 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcH
Confidence 344555556778888888887655556777777777644235666668888888888888888888888877777 7888
Q ss_pred HHHHHHHHHHHHhCC
Q 023753 260 SRAESYFDQAVKSAP 274 (277)
Q Consensus 260 deAi~~yekALeldP 274 (277)
+.|..+|++++..-|
T Consensus 87 ~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 87 NNARALFERAISSLP 101 (280)
T ss_dssp HHHHHHHHHHCCTSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888876544
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=2.1e-05 Score=72.05 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=85.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
+|...|-.+-|...|.+++.++|+-+.+++-+|.++. ..++|+.|.+.|...+++||.+-.++.+-|..++- -|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence 3445567788999999999999999999999998776 79999999999999999999999999999988877 899999
Q ss_pred HHHHHHHHHHhCCCCC
Q 023753 262 AESYFDQAVKSAPDDW 277 (277)
Q Consensus 262 Ai~~yekALeldPdD~ 277 (277)
|.+-+.+--+.+|+|+
T Consensus 152 Aq~d~~~fYQ~D~~DP 167 (297)
T COG4785 152 AQDDLLAFYQDDPNDP 167 (297)
T ss_pred hHHHHHHHHhcCCCCh
Confidence 9999999999999984
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.91 E-value=7.6e-05 Score=61.63 Aligned_cols=68 Identities=24% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.+++++|.++. ..|+.++|+.+|++|+...... ..++..+|..+.. .|++++|+..+++++...|++
T Consensus 1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCc
Confidence 357899999886 8999999999999999986654 5678899999999 999999999999999998874
No 143
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.91 E-value=7.8e-06 Score=80.99 Aligned_cols=89 Identities=20% Similarity=0.151 Sum_probs=83.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
...++.|+..|.|||+++|+++.++.+.+..+. +.++|-.|+.-+.+||+++|....+|+.-|.++.. .+++.+|...
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHH
Confidence 478999999999999999999999999987665 89999999999999999999999999999999988 9999999999
Q ss_pred HHHHHHhCCCC
Q 023753 266 FDQAVKSAPDD 276 (277)
Q Consensus 266 yekALeldPdD 276 (277)
|++...+.|++
T Consensus 95 l~~~~~l~Pnd 105 (476)
T KOG0376|consen 95 LEKVKKLAPND 105 (476)
T ss_pred HHHhhhcCcCc
Confidence 99999999987
No 144
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.90 E-value=3.4e-05 Score=78.79 Aligned_cols=88 Identities=10% Similarity=-0.001 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
.|+-++|..+.+.++..|+.....|.-+|.++. ..++|++|+.||+.|+.++|+|-..|..++.+..+ +++++-....
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHHHH
Confidence 355556666666666666666666666665554 55666666666666666666666666666666666 6666666665
Q ss_pred HHHHHHhCCC
Q 023753 266 FDQAVKSAPD 275 (277)
Q Consensus 266 yekALeldPd 275 (277)
-.+.+++.|.
T Consensus 132 r~~LLql~~~ 141 (700)
T KOG1156|consen 132 RNQLLQLRPS 141 (700)
T ss_pred HHHHHHhhhh
Confidence 5566655554
No 145
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.88 E-value=2.5e-05 Score=49.24 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
.+|+++|.++.. ++++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 344455555555 55555555555555555554
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.88 E-value=6.2e-05 Score=70.56 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
+++-..++++.|.+.++++-+.+.+...+...-|++.. ..| .+.+|...|+......+..+..++.+|.+.+. +|+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~ 216 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGH 216 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCC
Confidence 34444455555555555555444444333333333322 222 24444444444444334444444444444444 444
Q ss_pred HHHHHHHHHHHHHhCCC
Q 023753 259 ASRAESYFDQAVKSAPD 275 (277)
Q Consensus 259 ~deAi~~yekALeldPd 275 (277)
+++|+..+++|++.+|+
T Consensus 217 ~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHHHHCCC-CC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 44444444444444443
No 147
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=4.2e-05 Score=47.69 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
+.+|+.+|.+++ ..+++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 468999999997 8999999999999999999986
No 148
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.84 E-value=9.2e-05 Score=76.86 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-~n~~al~~LA~ll~~~~Gd~deAi~~ye 267 (277)
..++++.+++|++++|+|+.+.+.++..|. ..++.+.|.++.++++++++ +++.+|..+|.++-. .+++.+|+...+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A-~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa-~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYA-EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA-QKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHH-HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence 458999999999999999999999999887 68999999999999999955 678899999999988 999999999999
Q ss_pred HHHHhCCCC
Q 023753 268 QAVKSAPDD 276 (277)
Q Consensus 268 kALeldPdD 276 (277)
.|++-.|+|
T Consensus 538 ~al~E~~~N 546 (799)
T KOG4162|consen 538 AALEEFGDN 546 (799)
T ss_pred HHHHHhhhh
Confidence 999988875
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.83 E-value=6.3e-05 Score=76.91 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=77.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
|+-++....+|++|+++|+.|+.++|+|..+|..++.+.. +.++|+-...--.+.+++.|.....|..+|..+.. .++
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~-QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-~g~ 158 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI-QMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-LGE 158 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-HHH
Confidence 3444555688999999999999999999999999887554 78899988888888999999998889888888888 899
Q ss_pred HHHHHHHHHHHHHhC
Q 023753 259 ASRAESYFDQAVKSA 273 (277)
Q Consensus 259 ~deAi~~yekALeld 273 (277)
+..|...++...+..
T Consensus 159 y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999888877766544
No 150
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.83 E-value=3.5e-05 Score=48.55 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
+.+|+++|.++. ..+++++|+.+|++||+++|+|
T Consensus 1 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 468999999997 8999999999999999999974
No 151
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.0002 Score=72.47 Aligned_cols=90 Identities=23% Similarity=0.163 Sum_probs=82.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
.+.+...|++++|+.+.++||+..|..+..+...|.+|. ..|++.+|.++++.|-.+|+.|-..-.-.+..+++ .|+.
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCH
Confidence 467778899999999999999999999999999999997 89999999999999999999999888888888888 9999
Q ss_pred HHHHHHHHHHHH
Q 023753 260 SRAESYFDQAVK 271 (277)
Q Consensus 260 deAi~~yekALe 271 (277)
++|++.+..-..
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 999998766543
No 152
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.80 E-value=0.00048 Score=53.98 Aligned_cols=92 Identities=25% Similarity=0.294 Sum_probs=71.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK 257 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP---~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-n~~al~~LA~ll~~~~G 257 (277)
++...++++.|..+|++++..+| .....+..++..+. ..+++++|+..+.+++...+. ...++..++.++.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 56677888888888888888777 34455555555544 577888888888888888888 68888888888887 78
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 023753 258 DASRAESYFDQAVKSAPD 275 (277)
Q Consensus 258 d~deAi~~yekALeldPd 275 (277)
++++|+.++.+++...|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 217 KYEEALEYYEKALELDPD 234 (291)
T ss_pred cHHHHHHHHHHHHhhCcc
Confidence 888888888888888774
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.78 E-value=0.0002 Score=65.31 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL---SLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al---~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..+..++..|.-+. ..|++++|++.|++++...|..+.+. +.+|.+++. .+++++|+.+|++.++..|++
T Consensus 30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCC
Confidence 35666777887776 68999999999999999999987765 889999999 999999999999999999987
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=4.7e-05 Score=80.94 Aligned_cols=89 Identities=17% Similarity=0.080 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------------HcCCHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------------------VRGDFAKAEELCG 232 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e-----------------------------------~~Gd~eeA~e~~e 232 (277)
|...|..+|++|.++||.++.++-..+..+.+ ..+++-.|+..|+
T Consensus 507 Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQ 586 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQ 586 (1238)
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHH
Confidence 66788899999999999888776666655431 1246777888899
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753 233 RAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 233 kALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~ 277 (277)
.|+..+|.|...|..+|.+|.. .|++..|++.|.+|..++|.+|
T Consensus 587 sALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 587 SALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhH
Confidence 9999999999999999999988 8999999999999999999764
No 155
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00018 Score=66.95 Aligned_cols=89 Identities=17% Similarity=0.242 Sum_probs=78.1
Q ss_pred hCCCcHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEA--------NPGNA----------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (277)
Q Consensus 185 ~~Gd~deAi~~yekALel--------dP~n~----------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~ 246 (277)
..++|.+|...|+.||.. .|..+ ..+.||+.++. ..++|-++++++...+..+|.|..||+
T Consensus 190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~f 268 (329)
T KOG0545|consen 190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYF 268 (329)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 458899999998888653 45554 46789999886 899999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 247 LYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 247 ~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
.-|.+... ..+.++|.+-|.++|+++|.
T Consensus 269 rRakAhaa-~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 269 RRAKAHAA-VWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHh-hcCHHHHHHHHHHHHhcChh
Confidence 99999988 89999999999999999985
No 156
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=7.3e-05 Score=71.97 Aligned_cols=93 Identities=11% Similarity=0.002 Sum_probs=69.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
+-|...|-+.+|++.++.+|+..|. ++.+..++.+|. ...+.+.|+..|.+.++.-|.+...+...|.++.. +++++
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~ 307 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQE 307 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHH
Confidence 3455567777888888888877774 555556677775 67777788888888888888887777777777777 77788
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|+++|+.+++++|.|
T Consensus 308 ~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPIN 323 (478)
T ss_pred HHHHHHHHHHhcCCcc
Confidence 8888888888777765
No 157
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=9.9e-05 Score=72.51 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=81.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------HHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI------------LSLY 248 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a------------l~~L 248 (277)
+.+...+++++|...--..+++|+.|..+++-.+.+++ ...+.++|+.+|+++|.++|+...+ +..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 34445689999999999999999999999999999888 7899999999999999999986543 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 249 ADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 249 A~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.-+++ .|+|.+|.++|..||.++|++
T Consensus 256 gN~~fk-~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 256 GNDAFK-NGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hhhHhh-ccchhHHHHHHHHhhcCCccc
Confidence 666778 899999999999999999986
No 158
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=3.2e-05 Score=58.28 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 221 RGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 221 ~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
+++++.|+.+|+++++.+|. +..+++.+|.++++ .+++++|+.++++ ++.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~ 56 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPS 56 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCC
Confidence 58999999999999999995 56678889999999 9999999999988 655543
No 159
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.00084 Score=55.23 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=65.1
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~----------------------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
..++.+.++..+++|+.+-..+. .++..++..+. ..+++++|+.++++++.++|.+-
T Consensus 18 ~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E 96 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL-EAGDYEEALRLLQRALALDPYDE 96 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCH
Confidence 35688889999999998853321 13444444454 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
.++..+-.+|.. .|+..+|+.+|++..+
T Consensus 97 ~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 97 EAYRLLMRALAA-QGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 999999999999 9999999999998864
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.00018 Score=72.65 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=54.7
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a 244 (277)
....+++++|+.+|++|++++| +..+|..+|.++. ..|++++|+++|++|+.++|.++..
T Consensus 430 ~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~-~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 430 ALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYE-LKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3356999999999999999999 5889999999886 8999999999999999999998864
No 161
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.59 E-value=0.00022 Score=63.20 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G-----------d~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
.-+++|+.-|++||.++|+...++.++|.+|. ..+ .|++|..||++|+..+|+|..+...|-.
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~t-s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYT-SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34678999999999999999999999999886 222 4889999999999999999877665543
No 162
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.59 E-value=0.0015 Score=51.13 Aligned_cols=91 Identities=21% Similarity=0.217 Sum_probs=81.7
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
+...++++.|+..+.+++...+. ...++..++..+. ..+++++|..++.+++...|.....+..++..+.. .+++++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 254 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLLE-LGRYEE 254 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-cCCHHH
Confidence 34457899999999999999999 6999999999886 78899999999999999999988888888888885 899999
Q ss_pred HHHHHHHHHHhCCC
Q 023753 262 AESYFDQAVKSAPD 275 (277)
Q Consensus 262 Ai~~yekALeldPd 275 (277)
|...+.+++..+|.
T Consensus 255 ~~~~~~~~~~~~~~ 268 (291)
T COG0457 255 ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999998874
No 163
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.56 E-value=0.00017 Score=74.61 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=81.4
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
+.+++..|.++|.+++.++|++..+|+|++..|. +.++-.+|-..+.+|++.+-.+..+|-|+-.+..+ .+.+++|+.
T Consensus 531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi-~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-vge~eda~~ 608 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI-RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-VGEFEDAIK 608 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH-HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-cccHHHHHH
Confidence 4578899999999999999999999999999886 89999999999999999998899999999999999 999999999
Q ss_pred HHHHHHHhC
Q 023753 265 YFDQAVKSA 273 (277)
Q Consensus 265 ~yekALeld 273 (277)
.|.+.+.+.
T Consensus 609 A~~rll~~~ 617 (777)
T KOG1128|consen 609 AYHRLLDLR 617 (777)
T ss_pred HHHHHHHhh
Confidence 999998764
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.55 E-value=0.0002 Score=67.22 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=75.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-HHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA-SRAES 264 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~-deAi~ 264 (277)
...+.+|...|+...+..+.++..++.+|.+.. ..|+|++|++.+++|+..+|++++++.+++.+... .|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHH
Confidence 346889999999988888889999999998876 89999999999999999999999999999998888 7877 67888
Q ss_pred HHHHHHHhCCCC
Q 023753 265 YFDQAVKSAPDD 276 (277)
Q Consensus 265 ~yekALeldPdD 276 (277)
++.+....+|+.
T Consensus 258 ~l~qL~~~~p~h 269 (290)
T PF04733_consen 258 YLSQLKQSNPNH 269 (290)
T ss_dssp HHHHCHHHTTTS
T ss_pred HHHHHHHhCCCC
Confidence 999998899875
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.52 E-value=0.00085 Score=62.25 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=78.2
Q ss_pred HHHHHHh-CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 023753 179 NNNYSNN-NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQ 254 (277)
Q Consensus 179 Y~~m~e~-~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~LA~ll~~ 254 (277)
|..|... .++.+.|...|+++++..|.+..+|..|..++. ..++.+.|...|++++..-|... .+|..+..+-..
T Consensus 41 ~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~-~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 41 YALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI-KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp HHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 3444333 466667999999999999999999999999996 78999999999999999877765 567777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 023753 255 AHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeldPdD 276 (277)
.|+.+....+++++.+..|++
T Consensus 120 -~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 120 -YGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp -HS-HHHHHHHHHHHHHHTTTS
T ss_pred -cCCHHHHHHHHHHHHHHhhhh
Confidence 899999999999999998864
No 166
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.51 E-value=0.00016 Score=48.69 Aligned_cols=38 Identities=5% Similarity=0.066 Sum_probs=34.6
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR 215 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~ 215 (277)
.+..++...|++++|+..|+++++.+|+|+.+|..||.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 35678888999999999999999999999999999885
No 167
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.00047 Score=68.83 Aligned_cols=77 Identities=27% Similarity=0.133 Sum_probs=58.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
-.++..|++++|+.+|-+.-.+--+++.+++.+|.+|. ...+..+|++.|.+|..+-|++|.++.-||.+|-+ .||-
T Consensus 532 lt~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdk 608 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDK 608 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccch
Confidence 34556688888888888877777778888888887774 67788888888888888888888888877777665 6653
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.0012 Score=59.59 Aligned_cols=93 Identities=19% Similarity=0.156 Sum_probs=78.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHK 257 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALe-ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~G 257 (277)
..+...|++.+|+.+|++++. +..+++..+..+++..+ ..+++..|...+++..+.+|. .|+-+..+|.+|.. .|
T Consensus 97 ~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g 174 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QG 174 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cC
Confidence 344456888999999999987 67788888888998887 789999999999999999885 56677788888888 99
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 023753 258 DASRAESYFDQAVKSAPD 275 (277)
Q Consensus 258 d~deAi~~yekALeldPd 275 (277)
++++|+..|+.|+...|+
T Consensus 175 ~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 175 KYADAESAFEVAISYYPG 192 (251)
T ss_pred CchhHHHHHHHHHHhCCC
Confidence 999999999999988875
No 169
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.42 E-value=4.8e-05 Score=73.06 Aligned_cols=107 Identities=17% Similarity=0.070 Sum_probs=88.0
Q ss_pred CCCCCCCcchhhHHHHHHh---------CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 167 GGGGGGSGFSGSNNNYSNN---------NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 167 ~g~~g~~~~~~yY~~m~e~---------~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
.|+...+.++.-|.+.-+. .|.+++|++.|.+||+++|..+..+...+.++. ..++..+|+.-|..|+++
T Consensus 99 MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ei 177 (377)
T KOG1308|consen 99 MGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEI 177 (377)
T ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhcc
Confidence 4455556665544433222 478999999999999999999999999999886 789999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 238 dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
+|+.+.-|-.-+.+... ++++++|..+|..|.+++-+
T Consensus 178 n~Dsa~~ykfrg~A~rl-lg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERL-LGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred CcccccccchhhHHHHH-hhchHHHHHHHHHHHhcccc
Confidence 99988777666766666 89999999999999988643
No 170
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.42 E-value=0.00066 Score=68.70 Aligned_cols=67 Identities=24% Similarity=0.209 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
++++.+|..|. ..|++++|++++++||+..|..++.|...|.++-. .|++++|.++++.|-.+++.|
T Consensus 195 w~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 195 WTLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhh
Confidence 45677788775 79999999999999999999999999999999999 999999999999999999876
No 171
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.41 E-value=0.0014 Score=57.83 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+..++..|..++ ..|++.+|+..|++++...|.. +.+.+.+|.+++. .+++++|+..|++.++..|++
T Consensus 4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCC
Confidence 4677888998886 7999999999999999998864 5678999999999 999999999999999999985
No 172
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.37 E-value=0.00034 Score=43.74 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
+++.+|.++.. +|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 44555555555 5555555555555555555
No 173
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.35 E-value=0.0011 Score=68.58 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=74.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.+....++.++|+.+++++|+..|+....|..+|.++. .+++.+.|.+.|..-++.-|+.+..|..++.+--. .+..-
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~ 736 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLV 736 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchh
Confidence 33344578889999999999999999999999998874 78888888888888888888887777777776666 67777
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|...++++.-.||.|
T Consensus 737 rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 737 RARSILDRARLKNPKN 752 (913)
T ss_pred hHHHHHHHHHhcCCCc
Confidence 7777788777777775
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.35 E-value=0.00096 Score=61.59 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred hHHHHHHhC-CCcHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---H
Q 023753 178 SNNNYSNNN-HGSSSTDAYYEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DG---N 243 (277)
Q Consensus 178 yY~~m~e~~-Gd~deAi~~yekALeldP--~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----n~---~ 243 (277)
-...+|+.. +++++|+++|++|+++.- +. ...+.++|.++. ..++|++|++.|++++...-+ .. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~-~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA-RLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 344677788 899999999999999732 22 346778888886 899999999999999885422 12 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
.+.....|++. .+|+..|...|++....+|.
T Consensus 198 ~~l~a~l~~L~-~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 198 YFLKAILCHLA-MGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence 33445556666 89999999999999998885
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.00063 Score=62.78 Aligned_cols=83 Identities=25% Similarity=0.264 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEAN--PGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--SD----GNILSLYADLIWQ 254 (277)
Q Consensus 188 d~deAi~~yekALeld--P~n----~~al~nLA~lL~e~~-Gd~eeA~e~~ekALeldP--~n----~~al~~LA~ll~~ 254 (277)
++++|+.+|++|+.+. -++ +.++.++|.+|. .. +++++|+++|++|+++-- +. ...+..+|.++..
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 5666666666666652 222 345666666553 44 567777777777766521 11 2234556666666
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 023753 255 AHKDASRAESYFDQAVKS 272 (277)
Q Consensus 255 ~~Gd~deAi~~yekALel 272 (277)
.++|++|++.|+++...
T Consensus 168 -l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 168 -LGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -TT-HHHHHHHHHHHHHT
T ss_pred -hCCHHHHHHHHHHHHHH
Confidence 67777777777766553
No 176
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.34 E-value=0.0021 Score=62.83 Aligned_cols=83 Identities=23% Similarity=0.190 Sum_probs=67.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
++...=++..++.++..|++|..+..+|.+++ +.+.+.+|..+|+.|++..|.. ..+..+|.++.+ .|+..+|.+.+
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~-~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPSA-SDYAELADALDQ-LGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHH-cCChHHHHHHH
Confidence 45666777888888888888888888888876 7888889999999888887754 446678888888 88888888888
Q ss_pred HHHHHh
Q 023753 267 DQAVKS 272 (277)
Q Consensus 267 ekALel 272 (277)
+.++.+
T Consensus 385 ~e~L~~ 390 (400)
T COG3071 385 REALLL 390 (400)
T ss_pred HHHHHH
Confidence 888754
No 177
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.001 Score=63.96 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=77.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
-+....+|..|+..|.++|+..-.| +..|.|.|.+.+ ..++|..|+.-+.+|+.++|.+.-+++.-|.|+++ +.
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-Le 167 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-LE 167 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-HH
Confidence 3444568999999999999986555 456788887776 68999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhC
Q 023753 258 DASRAESYFDQAVKSA 273 (277)
Q Consensus 258 d~deAi~~yekALeld 273 (277)
++++|..+.+..++++
T Consensus 168 ~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 168 RFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHhhhhhhh
Confidence 9999999888877664
No 178
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.29 E-value=0.0022 Score=62.32 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=84.7
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ 265 (277)
.||...|+.+..+.|++.|=++..+...+.+|. ..++..+|+.-++.|-++..++.+.++-++.+++. .||.+.++..
T Consensus 168 ~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i-~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEIQPWDASLRQARAKCYI-AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH-hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHHHH
Confidence 478899999999999999999999999999886 89999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhCCCC
Q 023753 266 FDQAVKSAPDD 276 (277)
Q Consensus 266 yekALeldPdD 276 (277)
++..|+++|+.
T Consensus 246 iRECLKldpdH 256 (504)
T KOG0624|consen 246 IRECLKLDPDH 256 (504)
T ss_pred HHHHHccCcch
Confidence 99999999985
No 179
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.26 E-value=0.00055 Score=42.78 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
.+|+.+|.++. ..+++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC
Confidence 57899999987 8999999999999999999954
No 180
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.23 E-value=0.0034 Score=53.61 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+..++.-|.-.. ..++|.+|++.|+.+...-|.. ..+...++.+++. .+++++|+..+++-|+++|++
T Consensus 10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCC
Confidence 566778887665 7899999999999999998864 5678899999999 999999999999999999986
No 181
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.17 E-value=0.00063 Score=65.25 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=59.6
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
..|..++|...|+.|++++|.++.++..+|.+.. ..++..+|-+||-+|+.++|.|..++.+-+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3589999999999999999999999999999885 6799999999999999999999999887654
No 182
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.16 E-value=0.00092 Score=68.39 Aligned_cols=90 Identities=22% Similarity=0.137 Sum_probs=81.2
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
..|+...|++++++|+...|... ..+.++|.++. .-+-...|-.++.+++.++-..|..++.+|.+++. ..+.+.|+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a~ 696 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGAL 696 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHHH
Confidence 46788899999999999999765 44789999886 67778899999999999998899999999999999 99999999
Q ss_pred HHHHHHHHhCCCC
Q 023753 264 SYFDQAVKSAPDD 276 (277)
Q Consensus 264 ~~yekALeldPdD 276 (277)
+.|++|+.++|++
T Consensus 697 ~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 697 EAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999986
No 183
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0042 Score=62.54 Aligned_cols=86 Identities=14% Similarity=0.282 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
.+-...|++|+...+.|...|.+|..+.. +.+.+.+-...|.+++...|++++.|..-|.-.+...-+.+.|.+.|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 46778999999999999999999998775 66779999999999999999999999999988888444599999999999
Q ss_pred HHhCCCC
Q 023753 270 VKSAPDD 276 (277)
Q Consensus 270 LeldPdD 276 (277)
|+.+|+.
T Consensus 167 LR~npds 173 (568)
T KOG2396|consen 167 LRFNPDS 173 (568)
T ss_pred hhcCCCC
Confidence 9999986
No 184
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.10 E-value=0.0029 Score=65.51 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=87.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
+++++..++.+.|...|...++.-|+.+..|..++.+- +..+...+|...++++...||.|+..|...-.+-+. .|..
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR-~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPKNALLWLESIRMELR-AGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH-cCCH
Confidence 37778888999999999999999999999999999865 588999999999999999999999999888888888 9999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 023753 260 SRAESYFDQAVKSAPDD 276 (277)
Q Consensus 260 deAi~~yekALeldPdD 276 (277)
++|.....+||+-.|++
T Consensus 770 ~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999999999999975
No 185
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.97 E-value=0.0066 Score=59.37 Aligned_cols=94 Identities=16% Similarity=0.111 Sum_probs=79.1
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
.|..-+..-+++++|.+..+.+++..-+.. +..+.-.+ ..+++..=++..++.++..|++|..++.+|.+++. .+
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~ 342 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NK 342 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hh
Confidence 455556667899999999999999876655 33333334 47899999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 023753 258 DASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 258 d~deAi~~yekALeldPdD 276 (277)
.+.+|..+|+.|+...|+.
T Consensus 343 ~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 343 LWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHHHHHHHhcCCCh
Confidence 9999999999999998863
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.94 E-value=0.0017 Score=63.16 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+-..|.-|+ ++|.|++|+.||.+++.++|.|+..+.+-|.+|+. .+.|..|+.-++.||.++
T Consensus 100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALD 161 (536)
T ss_pred HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhh
Confidence 445677787 89999999999999999999999999999999999 999999999999999886
No 187
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.91 E-value=0.0023 Score=61.43 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=53.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..|+.++|...|+.|++++|++++++..+|.+.-. .++.-+|-.+|-+|+.++|.|
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCc
Confidence 58999999999999999999999999999999888 899999999999999999976
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0034 Score=59.24 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=76.7
Q ss_pred HHHHhCCCcHHHHHHHHHHH----HhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMI----EANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekAL----eldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
.+..+-||.+.|..+|+++- .++- .+..++.+.+.++. ..++|..|...|.+.+..||.++.+.++.|.|++-
T Consensus 220 r~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 220 RISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 34445588888999998443 3332 33456777777665 78899999999999999999999999999999988
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC
Q 023753 255 AHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeldPdD 276 (277)
.|+..+|++.+++++++.|..
T Consensus 299 -lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 -LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred -HHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999863
No 189
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.88 E-value=0.0049 Score=63.49 Aligned_cols=63 Identities=6% Similarity=0.027 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
..|..+...+. ..|+++.|+..++++++++|++...|..+..+|.. .|++++|.+.++...+.
T Consensus 495 ~~~~~Ll~a~~-~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACR-IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-SGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHH-HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-CCCHHHHHHHHHHHHHc
Confidence 34555555454 45666666666666666667666666666666666 67777777766665543
No 190
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.87 E-value=0.0079 Score=60.59 Aligned_cols=85 Identities=21% Similarity=0.130 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------------------D---- 241 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---------------------n---- 241 (277)
.+..+-+++-++||+++|+.+.+|..+|. +...-..+|+++|++|++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 56778899999999999999999988875 3455678888888888875210 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
..+...+|.|+++ .|+.++|++.|+..++.+|.
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCc
Confidence 3445678999999 99999999999999998886
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.86 E-value=0.012 Score=54.64 Aligned_cols=102 Identities=19% Similarity=0.122 Sum_probs=78.8
Q ss_pred cchhhHHHHHHh--CCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 023753 174 GFSGSNNNYSNN--NHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---IL 245 (277)
Q Consensus 174 ~~~~yY~~m~e~--~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~---al 245 (277)
.....|.+.... .|++++|+.+|+++....|..+ .+...++..++ +.+++++|+.++++-+.+.|+++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 345556544443 4999999999999999999876 57788888887 899999999999999999997644 45
Q ss_pred HHHHHHHHHHcC----C---HHHHHHHHHHHHHhCCCC
Q 023753 246 SLYADLIWQAHK----D---ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 246 ~~LA~ll~~~~G----d---~deAi~~yekALeldPdD 276 (277)
+..|..++.... | ..+|+..|+..|+..|+.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 556666554222 2 347889999999999984
No 192
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.83 E-value=0.0067 Score=52.07 Aligned_cols=62 Identities=24% Similarity=0.215 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
-.-|..+. ..++++.|++.|.+||.+-|.++.+|++-|..+.. +++.++|++-+++|+++.-
T Consensus 47 El~~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 47 ELKAIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcC
Confidence 34455665 58999999999999999999999999999999988 9999999999999999864
No 193
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.83 E-value=0.002 Score=36.96 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
++..+|.+++. .+++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence 34455555555 55555555555555555554
No 194
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.82 E-value=0.0079 Score=66.39 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=83.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAH 256 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~ 256 (277)
+..+|+....+++|.++|+.+++..-+-..+|..||.++. .+.+-++|...+.+|++.-|. ...+..-+|.+-++ .
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-Y 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-c
Confidence 3577888889999999999999988888899999999986 777888999999999999997 77788888998888 9
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 023753 257 KDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 257 Gd~deAi~~yekALeldPd 275 (277)
||.+++..+|+-.+..+|.
T Consensus 1614 GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc
Confidence 9999999999999988875
No 195
>PLN03077 Protein ECB2; Provisional
Probab=96.81 E-value=0.011 Score=62.21 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=58.6
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA 262 (277)
+...|++++|++.++++ .+.|+ +.+|..+-..+. ..++.+.|+...+++++++|+++.+|..++.+|.. .|++++|
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-~g~~~~a 710 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-AGKWDEV 710 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-CCChHHH
Confidence 33456677777777665 24453 455555555554 56777777777777888888888888888888877 8888888
Q ss_pred HHHHHHHHH
Q 023753 263 ESYFDQAVK 271 (277)
Q Consensus 263 i~~yekALe 271 (277)
.+..+...+
T Consensus 711 ~~vr~~M~~ 719 (857)
T PLN03077 711 ARVRKTMRE 719 (857)
T ss_pred HHHHHHHHH
Confidence 877766654
No 196
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.79 E-value=0.0075 Score=60.16 Aligned_cols=85 Identities=22% Similarity=0.200 Sum_probs=71.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----~~al~~LA~ll~~~~Gd~deA 262 (277)
.+.+.|.+.++...+..|+.+..++..|+++. ..++.++|++.|++|+.....- ...++.+++++.. +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 56788999999999999999999999999887 8899999999999988644433 2346678888888 8999999
Q ss_pred HHHHHHHHHhC
Q 023753 263 ESYFDQAVKSA 273 (277)
Q Consensus 263 i~~yekALeld 273 (277)
..+|.+.++.+
T Consensus 325 ~~~f~~L~~~s 335 (468)
T PF10300_consen 325 AEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHhcc
Confidence 99999988754
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.0077 Score=56.20 Aligned_cols=65 Identities=28% Similarity=0.304 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.|+.|.-++ +.|+|..|++.|..-|+..|+. +.+++.||.+++. +|+|++|...|..+++-.|+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCC
Confidence 566666665 6899999999999999999975 6789999999999 999999999999999998875
No 198
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.76 E-value=0.0029 Score=38.81 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
+++.+|.++.. .|++++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 45566666666 66666666666666666665
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.75 E-value=0.0069 Score=64.24 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
+++.+|.+...+.++..|+-+.+...-|..+. +.|++++|..+++..-...++|-..+..+-.||.+ ++++++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHH
Confidence 78999999999999999999999988888886 89999999988888888888999999999999999 99999999999
Q ss_pred HHHHHhCCC
Q 023753 267 DQAVKSAPD 275 (277)
Q Consensus 267 ekALeldPd 275 (277)
++|++.+|+
T Consensus 101 e~~~~~~P~ 109 (932)
T KOG2053|consen 101 ERANQKYPS 109 (932)
T ss_pred HHHHhhCCc
Confidence 999999996
No 200
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.71 E-value=0.016 Score=45.46 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n--~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
..+..++++++.+|+|..+.+.+|..+. ..|++++|++.+-.+++.++++ ..+...+-.++-. .|.-+....-|++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~plv~~~RR 83 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-HHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCChHHHHHHH
Confidence 4567899999999999999999999887 8999999999999999999865 5555555444444 6665544444554
Q ss_pred HH
Q 023753 269 AV 270 (277)
Q Consensus 269 AL 270 (277)
-+
T Consensus 84 kL 85 (90)
T PF14561_consen 84 KL 85 (90)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 201
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.022 Score=54.01 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=74.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------------
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG-------------------------------- 232 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~e-------------------------------- 232 (277)
..+++.+|...|..+++.+|++..+...|+.+|. ..|+.+.|...+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3589999999999999999999999999999886 6887766554433
Q ss_pred --HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 233 --RAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 233 --kALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
+.+..||+|.++.+.+|..+.. .|+.++|.+.+-..++.+-
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcc
Confidence 2334599999999999999999 9999999999988887753
No 202
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.67 E-value=0.018 Score=60.43 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=71.9
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLYA 249 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~-----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~LA 249 (277)
.++...+++++|..+++++++..|... .++..+|.++. ..|++++|+.++++++...... ..++.++|
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 344567999999999999998655432 35667787776 7999999999999999764421 24567789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 023753 250 DLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yekALel 272 (277)
.+++. .|++++|..++++++++
T Consensus 539 ~~~~~-~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 539 EILFA-QGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHH-CCCHHHHHHHHHHHHHH
Confidence 99998 99999999999999876
No 203
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.62 E-value=0.011 Score=59.50 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=86.2
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
-|.++-+.++++..|...|++||..|-.|...|..|+.+-. +.+...-|...+.+|+.+-|.--..|+-+-.+--. .|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-knk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-KNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-hhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hc
Confidence 46677788899999999999999999999999999999775 78889999999999999999988888888776655 89
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 023753 258 DASRAESYFDQAVKSAPD 275 (277)
Q Consensus 258 d~deAi~~yekALeldPd 275 (277)
+..-|.+.|++=+...|+
T Consensus 156 Ni~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPD 173 (677)
T ss_pred ccHHHHHHHHHHHcCCCc
Confidence 999999999999998886
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.57 E-value=0.0057 Score=62.14 Aligned_cols=87 Identities=28% Similarity=0.161 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e--~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
...|+..|-++++.-|.....+.|+|.++.. ..++.-.|+.-+..|+++||-...+++.|+.++.+ .+++.+|+.+.
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~~ 468 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhhH
Confidence 4579999999999999999999999988751 23577789999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCC
Q 023753 267 DQAVKSAPDD 276 (277)
Q Consensus 267 ekALeldPdD 276 (277)
..+....|.|
T Consensus 469 ~alq~~~Ptd 478 (758)
T KOG1310|consen 469 WALQMSFPTD 478 (758)
T ss_pred HHHhhcCchh
Confidence 9888888854
No 205
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.54 E-value=0.0044 Score=40.05 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAI 235 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekAL 235 (277)
|.++|.++. ..|++++|+++|++|+
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 344444443 4445555555555533
No 206
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.0044 Score=35.45 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
.+++++|.++. ..+++++|+.+|+++++++|.+
T Consensus 2 ~~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYL-KLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCC
Confidence 46788998887 7899999999999999998864
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.48 E-value=0.018 Score=57.46 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=69.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI-LSLYADLIWQ 254 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a-l~~LA~ll~~ 254 (277)
+++....++.++|+..|++|+.....- ...++.+++++. .+.+|++|..+|.+.++.+.-.... .+..|.++..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 366666799999999999998543332 356778888886 7899999999999999987654444 4445666666
Q ss_pred HcCCH-------HHHHHHHHHHHHh
Q 023753 255 AHKDA-------SRAESYFDQAVKS 272 (277)
Q Consensus 255 ~~Gd~-------deAi~~yekALel 272 (277)
.++. ++|.++|.++-.+
T Consensus 353 -l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 -LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred -hccchhhhhhHHHHHHHHHHHHHH
Confidence 8988 8888888887544
No 208
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.03 Score=52.72 Aligned_cols=100 Identities=17% Similarity=0.139 Sum_probs=85.0
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~ 255 (277)
-.||+.++..+..-..|+++-+.+|.++|.|..+|.-.-.++.....+..+-++++.+.++-+|.|.++|.+--.+.-.
T Consensus 46 m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~- 124 (318)
T KOG0530|consen 46 MDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL- 124 (318)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-
Confidence 4588999999999999999999999999999999887777777677789999999999999999999999877666655
Q ss_pred cCCHH-HHHHHHHHHHHhCCCC
Q 023753 256 HKDAS-RAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~d-eAi~~yekALeldPdD 276 (277)
.+++. +-+++.+.++..+..|
T Consensus 125 l~d~s~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 125 LGDPSFRELEFTKLMLDDDAKN 146 (318)
T ss_pred hcCcccchHHHHHHHHhccccc
Confidence 78877 7778888888766554
No 209
>PRK10941 hypothetical protein; Provisional
Probab=96.45 E-value=0.02 Score=53.57 Aligned_cols=66 Identities=17% Similarity=0.035 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD~ 277 (277)
+.|+=.+|. ..+++++|+.+.++.+.++|+++.-+..-|.+|.+ .+.+..|+.-|+..|+..|++.
T Consensus 184 l~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 184 LDTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCch
Confidence 445544554 78999999999999999999999999999999999 9999999999999999999873
No 210
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.44 E-value=0.034 Score=60.88 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred HHhCCCcHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcC
Q 023753 183 SNNNHGSSSTDAYYEKMIE----ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALe----ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld-P~n~~al~~LA~ll~~~~G 257 (277)
+...+++++|.+.|+++.+ +.|+ ...+..+...|. +.|++++|++.|+++.+.+ +.+...|..+...|.+ .|
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~-k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G 628 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACA-NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KG 628 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cC
Confidence 3344666666666666654 2343 334444444444 5566666666666665554 2344555555555555 55
Q ss_pred CHHHHHHHHHHHHHh
Q 023753 258 DASRAESYFDQAVKS 272 (277)
Q Consensus 258 d~deAi~~yekALel 272 (277)
++++|+.+|++..+.
T Consensus 629 ~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 629 DWDFALSIYDDMKKK 643 (1060)
T ss_pred CHHHHHHHHHHHHHc
Confidence 666666655555543
No 211
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.44 E-value=0.036 Score=60.67 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=66.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGNILSLYADLIWQ 254 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel----dP~n~~al~~LA~ll~~ 254 (277)
..|...|++++|+..|+++.+.. | |...|+.+...|. +.+++++|.+.|++.... .|+ ...|..+-.+|.+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k 591 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN 591 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 45556788888888888887653 4 4666777777776 788888888888888763 454 4566677777777
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 023753 255 AHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeld 273 (277)
.|++++|+++|+++.+.+
T Consensus 592 -~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 592 -AGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred -CCCHHHHHHHHHHHHHcC
Confidence 888888888888887764
No 212
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.41 E-value=0.016 Score=41.46 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 209 al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
.++.+|..++ +.++|++|..+++++++++|+|..+......+
T Consensus 3 ~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4667777777 89999999999999999999999987665443
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.02 Score=46.95 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=44.7
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
...+++++|+..+++++.++|.+..++..+-.+|. ..|+..+|+++|++...
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999897 89999999999998754
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.36 E-value=0.0069 Score=39.10 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
++.++|.+|.. .|++++|+.+|+++|.+
T Consensus 1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 47889999999 99999999999996544
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.018 Score=55.98 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=41.2
Q ss_pred CCCcHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 186 NHGSSSTDAYYEKMIEA-NPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 186 ~Gd~deAi~~yekALel-dP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
+|+...-...++|.+-. +|+- ..++..|+..+. ..|-|++|++..++|+++||.|..+...++.++.. .+++++
T Consensus 150 ~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~Ke 227 (491)
T KOG2610|consen 150 NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRHKE 227 (491)
T ss_pred ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchhhh
Confidence 34444444444444444 4443 233444444443 45555555555556666655555555555555544 555555
Q ss_pred HHHHHHH
Q 023753 262 AESYFDQ 268 (277)
Q Consensus 262 Ai~~yek 268 (277)
++++..+
T Consensus 228 g~eFM~~ 234 (491)
T KOG2610|consen 228 GKEFMYK 234 (491)
T ss_pred HHHHHHh
Confidence 5555443
No 216
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.32 E-value=0.013 Score=45.90 Aligned_cols=49 Identities=22% Similarity=0.139 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 227 A~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+..++++++.+|+|..+.+.+|..+.. .|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccc
Confidence 4678899999999999999999999999 999999999999999998764
No 217
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.017 Score=55.54 Aligned_cols=84 Identities=12% Similarity=-0.055 Sum_probs=76.0
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
....+|+.|++++..-.+.+|.+...+..+|.+|+ ...+|..|..||++.-.+.|....+..+.|.-+++ .+.+.+|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHH
Confidence 34568999999999999999999999999999998 78999999999999999999999999999999999 89999888
Q ss_pred HHHHHH
Q 023753 264 SYFDQA 269 (277)
Q Consensus 264 ~~yekA 269 (277)
......
T Consensus 99 rV~~~~ 104 (459)
T KOG4340|consen 99 RVAFLL 104 (459)
T ss_pred HHHHHh
Confidence 766544
No 218
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.30 E-value=0.014 Score=53.81 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=71.5
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-Hc
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ-AH 256 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~-~~ 256 (277)
|.+-.+...++++.|.+.|...+++||.+-.++.|.|..++ ..|++.-|.+-+.+-...||+||.--. ++|+. ..
T Consensus 104 yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D~~DPfR~L---WLYl~E~k 179 (297)
T COG4785 104 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDDPNDPFRSL---WLYLNEQK 179 (297)
T ss_pred HHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcCCCChHHHH---HHHHHHhh
Confidence 44555556799999999999999999999999999998776 689999999999999999999996432 22222 13
Q ss_pred CCHHHHHH-HHHHHHHhCCC
Q 023753 257 KDASRAES-YFDQAVKSAPD 275 (277)
Q Consensus 257 Gd~deAi~-~yekALeldPd 275 (277)
-+..+|.. ..+++-..+.+
T Consensus 180 ~dP~~A~tnL~qR~~~~d~e 199 (297)
T COG4785 180 LDPKQAKTNLKQRAEKSDKE 199 (297)
T ss_pred CCHHHHHHHHHHHHHhccHh
Confidence 46667664 44555555433
No 219
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.28 E-value=0.052 Score=51.13 Aligned_cols=84 Identities=23% Similarity=0.227 Sum_probs=44.5
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR-AESYFD 267 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de-Ai~~ye 267 (277)
+..|.-+|+..-+..|-.+..++..|.+.. .+++|++|+..++.|+..++++|+++.++-.+... .|.-.+ -..++.
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence 344555555555544555555555555443 55666666666666666666666666666555544 443322 233444
Q ss_pred HHHHhCC
Q 023753 268 QAVKSAP 274 (277)
Q Consensus 268 kALeldP 274 (277)
+.....|
T Consensus 267 QLk~~~p 273 (299)
T KOG3081|consen 267 QLKLSHP 273 (299)
T ss_pred HHHhcCC
Confidence 4444444
No 220
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.27 E-value=0.0052 Score=56.88 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=56.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~ 243 (277)
..|....+|.+.|.+.|.+|+++-|....-|+.+|.+- ++.|+++.|.+.|++.++++|.+..
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence 35666779999999999999999999999999999755 6999999999999999999998754
No 221
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.24 E-value=0.017 Score=52.80 Aligned_cols=66 Identities=21% Similarity=0.124 Sum_probs=58.1
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
..+..+.|+..+.+||+++|.+..++...|.+|- +...|++|++-|.+.++++|....+.-..+.+
T Consensus 146 Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye-k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 146 KLRKWESAIEDCSKAIELNPTYEKALERRAEAYE-KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 3467889999999999999999999999998885 88999999999999999999988876655544
No 222
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.23 E-value=0.045 Score=57.44 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=70.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNILS 246 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~--------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-----n~~al~ 246 (277)
..++...|++++|..++++++++-.. ...++..+|.+++ ..|++++|..++++++.+... ...++.
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW-EWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 34556679999999999999886221 2334556787787 679999999999999886432 244566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 247 LYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 247 ~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
.+|.++.. .|++++|..++++++.+.
T Consensus 617 ~la~~~~~-~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 617 MLAKISLA-RGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence 68888888 999999999999997753
No 223
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.21 E-value=0.021 Score=58.83 Aligned_cols=87 Identities=8% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-~n~~al~~LA~ll~~~~Gd~ 259 (277)
.+|...|++++|...|+++ .+.|...|+.+...|. ..|++++|++.|++..+..- -|...+..+..++.. .+++
T Consensus 267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-~g~~ 341 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LALL 341 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-ccch
Confidence 4555556666666666554 2335555555555554 55666666666665544321 133344444444544 5555
Q ss_pred HHHHHHHHHHHHh
Q 023753 260 SRAESYFDQAVKS 272 (277)
Q Consensus 260 deAi~~yekALel 272 (277)
++|.+.+..+++.
T Consensus 342 ~~a~~i~~~m~~~ 354 (697)
T PLN03081 342 EHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 224
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.19 E-value=0.011 Score=36.16 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
.+++++|.++. ..|++++|+++|+++++..|+.
T Consensus 1 ~a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYY-KLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHH-HccCHHHHHHHHHHHHHHCcCC
Confidence 46889999887 7899999999999999999973
No 225
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.16 E-value=0.0071 Score=55.97 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 215 RFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 215 ~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..+. ..+|.+.|.+.|.+|+++.|+...-|+.+|..... .|+++.|.+.|++.++++|.|
T Consensus 3 ~~~~-~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLA-ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhc-ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccc
Confidence 3444 67899999999999999999999999999998877 999999999999999999987
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.031 Score=54.49 Aligned_cols=82 Identities=10% Similarity=-0.012 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH---HHHHHHHHHHHHcCCHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGN---ILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-n~~---al~~LA~ll~~~~Gd~deA 262 (277)
|-|++|++..++|+++||.+..+....+.++. ..+++.++.++..+.-..=.. .-. -|-..|.++++ ..+|+.|
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE-~aeye~a 266 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE-GAEYEKA 266 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc-ccchhHH
Confidence 55666666666666666666666666666553 556666666655543221110 000 12223555555 4566666
Q ss_pred HHHHHHHH
Q 023753 263 ESYFDQAV 270 (277)
Q Consensus 263 i~~yekAL 270 (277)
++.|++-|
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 66665544
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.12 E-value=0.038 Score=54.05 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=73.1
Q ss_pred HhCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHH
Q 023753 184 NNNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKEV---RGDFAKAEELCGR-AILANPSDGNILSLYADLIWQA 255 (277)
Q Consensus 184 e~~Gd~deAi~~yekALel----dP~n~~al~nLA~lL~e~---~Gd~eeA~e~~ek-ALeldP~n~~al~~LA~ll~~~ 255 (277)
....+|+.-+.+.+.+-.+ -++.+.+.+.||.++. . .|+.++|+..+.. .....+.+++.+..+|.+|-+.
T Consensus 152 RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 152 RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 3457888888887777666 5567788889998886 6 7999999999999 5555678999999999987541
Q ss_pred --------cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 --------HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 --------~Gd~deAi~~yekALeldPdD 276 (277)
....++|+.+|.++.+++|+.
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 124679999999999999864
No 228
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.039 Score=56.58 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=75.0
Q ss_pred chhhHHHHHHhCCCcHHHHHHHHHHHHhC---------------------------CC----CHHHHHHHHHHHHHHcCC
Q 023753 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN---------------------------PG----NALLLGNYARFLKEVRGD 223 (277)
Q Consensus 175 ~~~yY~~m~e~~Gd~deAi~~yekALeld---------------------------P~----n~~al~nLA~lL~e~~Gd 223 (277)
....+.+.+...++|++|...|+..++-+ |. ....+||.|.++. ..|+
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i-~~gk 190 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILI-ENGK 190 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHH-hccc
Confidence 44556677778899999999998884432 22 2346778887776 6899
Q ss_pred HHHHHHHHHHHHHh-------CCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 224 FAKAEELCGRAILA-------NPSD--------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 224 ~eeA~e~~ekALel-------dP~n--------~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.+|++.+++|+++ +-.+ ..+...++.++.. +|+.++|...|...|+.+|-|
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-QGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhcCCC
Confidence 99999999999443 1111 2235567888888 999999999999999999876
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.08 E-value=0.061 Score=48.74 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=72.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
..+.....+++..|...+++..+.+|.. |..+..+|.+|. ..|.++.|+..|+.|+...|. +.+...|+..+.. +
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~-q 206 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK-Q 206 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH-h
Confidence 3455566789999999999999999874 677888999997 899999999999999999885 5667778888888 8
Q ss_pred CCHHHHHHHHHHH
Q 023753 257 KDASRAESYFDQA 269 (277)
Q Consensus 257 Gd~deAi~~yekA 269 (277)
|+.++|...|...
T Consensus 207 gr~~ea~aq~~~v 219 (251)
T COG4700 207 GRLREANAQYVAV 219 (251)
T ss_pred cchhHHHHHHHHH
Confidence 9887776655443
No 230
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0055 Score=56.89 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=55.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.-|+ ..++|..|+.+|-+||.++|..+.++.+-|.++++ .++++.+..-..+|++++|+.
T Consensus 17 gnk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~ 77 (284)
T KOG4642|consen 17 GNKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNL 77 (284)
T ss_pred ccccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHH
Confidence 44454 56789999999999999999999999999999999 999999999999999999974
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.99 E-value=0.075 Score=47.94 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 023753 187 HGSSSTDAYYEKMIEA----NPGN---ALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPS------DGNILS 246 (277)
Q Consensus 187 Gd~deAi~~yekALel----dP~n---~~al~nLA~lL~e~~Gd-------~eeA~e~~ekALeldP~------n~~al~ 246 (277)
..+++|++.|.-||-. ...+ +..+..+|++|. ..++ +.+|.++|++|++.... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4677888888887653 2222 466778899886 5666 45677777777776532 256788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 247 LYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 247 ~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.+|.+... .|++++|+.+|.+++..
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcC
Confidence 89999988 99999999999999865
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.94 E-value=0.053 Score=50.43 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+..|++-|.... ..|++++|+.+|+++....|.. ..+...++.+++. .+++++|+.++++-+++.|++
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCC
Confidence 456777776665 7899999999999999998875 4578889999999 999999999999999999985
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.94 E-value=0.011 Score=58.80 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=62.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PS--DGNILSLYADLIW 253 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld----P~--n~~al~~LA~ll~ 253 (277)
.|+|+.|+..-+.-|++.-.. -.++.|+|.++. ..++++.|+++|++++.+. .. .+...|.||..|.
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt 286 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT 286 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH
Confidence 478888887777666664333 247788888776 6888888888888866543 22 3445677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 023753 254 QAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 254 ~~~Gd~deAi~~yekALeld 273 (277)
. ..++++||.|+.+-|++.
T Consensus 287 l-l~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 287 L-LKEVQKAITYHQRHLAIA 305 (639)
T ss_pred H-HHHHHHHHHHHHHHHHHH
Confidence 7 788888888888877653
No 234
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.046 Score=56.08 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=61.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE-------------------------------- 228 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~-------------------------------- 228 (277)
.++..+++|++|++...+.+...|++..++..--.++. +...|++|+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI-q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALI-QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh-hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 34445688999999999999998888776655444443 444455544
Q ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 229 -ELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 229 -e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+++ -.++.+...+...|.+++. +++|++|.+.|+..++.+-++
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCch
Confidence 3333 2355555666777888888 888888888888887765443
No 235
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.024 Score=55.52 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=69.9
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
.+.||.-|+..++-.+.++.... .....+|.+++ ..|||++|+..|.-+...+.-+.....++|.+++- .|.|.+|.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~ 111 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAK 111 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHH
Confidence 45799999999999987776554 44555677776 78999999999999999887788999999999998 99999999
Q ss_pred HHHHHH
Q 023753 264 SYFDQA 269 (277)
Q Consensus 264 ~~yekA 269 (277)
..-.+|
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 887765
No 236
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.043 Score=55.42 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=76.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHHcCC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI--LSLYADLIWQAHKD 258 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a--l~~LA~ll~~~~Gd 258 (277)
.+-....+++....+|++-|+..|.|-.+|..||.+-. ..|+.+.|...|+-||....-+..- |-.|-.+-.. .+.
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E 522 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGE 522 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cch
Confidence 34445689999999999999999999999999998765 8999999999999999876554433 3344455555 799
Q ss_pred HHHHHHHHHHHHHhCCC
Q 023753 259 ASRAESYFDQAVKSAPD 275 (277)
Q Consensus 259 ~deAi~~yekALeldPd 275 (277)
+++|..+|++.|+..+.
T Consensus 523 ~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999998764
No 237
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.054 Score=48.83 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=60.4
Q ss_pred hCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
..+++++|+..++.++..--+. +.+-.++|.++. .++.+++|+..+.....-+ -.+.+....|.++.. .|+-++
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~k~~ 177 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGDKQE 177 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCchHH
Confidence 3477788888888777543332 345667777776 6788888877776543311 123334556888888 899999
Q ss_pred HHHHHHHHHHhCCC
Q 023753 262 AESYFDQAVKSAPD 275 (277)
Q Consensus 262 Ai~~yekALeldPd 275 (277)
|+..|++|++..++
T Consensus 178 Ar~ay~kAl~~~~s 191 (207)
T COG2976 178 ARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHccCC
Confidence 99999999988654
No 238
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.88 E-value=0.11 Score=49.16 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 023753 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--KDASRAESYFDQ 268 (277)
Q Consensus 191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~--Gd~deAi~~yek 268 (277)
..+..|++||+.+|++...+..|-.... ..-+-++..+-+++++..+|+++..|..|-.+..... -.+.+....|.+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 4455566666666665555555544443 3445555555666666666665555544433222201 134555555655
Q ss_pred HHH
Q 023753 269 AVK 271 (277)
Q Consensus 269 ALe 271 (277)
+|+
T Consensus 128 ~l~ 130 (321)
T PF08424_consen 128 CLR 130 (321)
T ss_pred HHH
Confidence 554
No 239
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.82 E-value=0.17 Score=44.13 Aligned_cols=73 Identities=19% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.++.++++..+.-+-.+.|+.+.+...-|+++. ..+++.+|+..|+.+....|..+.+-..++.|++. ++|..
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~ 95 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS 95 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH
Confidence 468889999999999999999999988898775 89999999999999999999999999999999988 88865
No 240
>PLN03077 Protein ECB2; Provisional
Probab=95.81 E-value=0.071 Score=56.27 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCCcHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHH
Q 023753 186 NHGSSSTDAYYEKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 186 ~Gd~deAi~~yekALe--ldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~Gd~de 261 (277)
.|+.++|+.+|+++++ +.|+...+...+ ..+. ..|++++|.++|++..+..+- +...|..+..+|.+ .|++++
T Consensus 567 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~-~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~e 643 (857)
T PLN03077 567 HGKGSMAVELFNRMVESGVNPDEVTFISLL-CACS-RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTE 643 (857)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHh-hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHH
Confidence 4555555555555554 234333322222 2232 345555555555555432211 22344455555555 555555
Q ss_pred HHHHHHH
Q 023753 262 AESYFDQ 268 (277)
Q Consensus 262 Ai~~yek 268 (277)
|.+++++
T Consensus 644 A~~~~~~ 650 (857)
T PLN03077 644 AYNFINK 650 (857)
T ss_pred HHHHHHH
Confidence 5555554
No 241
>PRK10941 hypothetical protein; Provisional
Probab=95.80 E-value=0.072 Score=49.81 Aligned_cols=72 Identities=8% Similarity=-0.072 Sum_probs=63.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
.+..+...++++.|+.+.++++.++|+++.-+...|.+|. +.+.+..|..-++.-|+..|+++.+......+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3455566799999999999999999999999999999887 89999999999999999999999987654443
No 242
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.053 Score=53.24 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=65.8
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL------------ 245 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al------------ 245 (277)
+..--+...|+|++|.+.|+-+.+.+.-++..+.++|.+++ ..|.|.+|....++|-+ .|-....+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHH
Confidence 33344555799999999999999988888999999998876 78888888877666522 11111111
Q ss_pred ---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 246 ---------------SLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 246 ---------------~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
..+|.+.+. .-.|++|++.|.+.+.-+|+
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChh
Confidence 123334444 45688888888888887775
No 243
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.06 Score=50.12 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=70.4
Q ss_pred CcchhhHH--HHHHhCCCcHHHHHHHHHHHHhC----C-CC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 023753 173 SGFSGSNN--NYSNNNHGSSSTDAYYEKMIEAN----P-GN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (277)
Q Consensus 173 ~~~~~yY~--~m~e~~Gd~deAi~~yekALeld----P-~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a 244 (277)
++.+.|-+ ++|....++..|-..|.+|-+.. . ++ +..+...+.+| +..+..+|+.++++||++-.+-...
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHhhhHH
Confidence 44444444 67777788888888888885542 1 12 34555656666 4679999999999999997654333
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 245 ------LSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 245 ------l~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
+..+|.+|-.-..++++|+.+|++|-+.
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4478888877458999999999998764
No 244
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.63 E-value=0.082 Score=58.81 Aligned_cols=85 Identities=15% Similarity=0.325 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
++.++|...+++||+--|. +..+....|.+-+ +.||.+++..+|+-.+...|.-.+.|..|...-.. +++.+-+..
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik-~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIK-HGDIKYVRD 1655 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHc-cCCHHHHHH
Confidence 3456788999999999998 7888889998877 89999999999999999999999999999999888 999999999
Q ss_pred HHHHHHHhC
Q 023753 265 YFDQAVKSA 273 (277)
Q Consensus 265 ~yekALeld 273 (277)
+|+|++.+.
T Consensus 1656 lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1656 LFERVIELK 1664 (1710)
T ss_pred HHHHHHhcC
Confidence 999999864
No 245
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.61 E-value=0.042 Score=49.33 Aligned_cols=62 Identities=19% Similarity=0.148 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 192 Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
|+.+|++|+.+.|++...++.+|.+.. ..++.-.|+-+|-|++...--.+.+..++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 789999999999999999999998886 78999999999999998876678888888876655
No 246
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.56 E-value=0.03 Score=39.99 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+.++.+|..++. .++|++|..+.+++|+++|+|
T Consensus 2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCc
Confidence 457889999999 999999999999999999987
No 247
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.074 Score=50.13 Aligned_cols=94 Identities=16% Similarity=0.022 Sum_probs=73.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK-EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~-e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
...+..+++-|++.++++.++|.+.......-+++-. .-...+..|.-+|+..-+.-|-.+..+...|.|.+. +++|+
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~e 224 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHH
Confidence 3344578899999999999998765433222222211 122368899999999999888889999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
+|...++.||..++++
T Consensus 225 eAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKD 240 (299)
T ss_pred HHHHHHHHHHhccCCC
Confidence 9999999999999886
No 248
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.48 E-value=0.036 Score=35.33 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.++.++|.+|.. +|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 355666666666 66666666666666654
No 249
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.45 E-value=0.12 Score=44.22 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 192 TDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAIL-ANPS-DGNILSLYADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 192 Ai~~yekALeldP~n~~al~nLA~lL~e--~~Gd~eeA~e~~ekALe-ldP~-n~~al~~LA~ll~~~~Gd~deAi~~ye 267 (277)
..+.+.+.-....-.....++||+++.. ...|..+.+.+++..++ ..|. ..+.++++|.-++. .++|++|+.|.+
T Consensus 17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd 95 (149)
T KOG3364|consen 17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVD 95 (149)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHH
Confidence 3333333333333345678888888752 22366789999999997 5554 45677888888888 999999999999
Q ss_pred HHHHhCCCC
Q 023753 268 QAVKSAPDD 276 (277)
Q Consensus 268 kALeldPdD 276 (277)
..++.+|+|
T Consensus 96 ~ll~~e~~n 104 (149)
T KOG3364|consen 96 ALLETEPNN 104 (149)
T ss_pred HHHhhCCCc
Confidence 999999987
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.42 E-value=0.088 Score=51.53 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----------CCCCHHHHHHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI-LA-----------NPSDGNILSLYADLIWQA 255 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL-el-----------dP~n~~al~~LA~ll~~~ 255 (277)
.+++|+.+|+++.+++|+. ..--|++.++. ..|+..+....+++.. .+ .-.+...+..++.+...
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~-~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL- 317 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDY-YSGINAATLLM-LAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL- 317 (374)
T ss_pred HHHHHHHHHHHHHcCCccc-cchHHHHHHHH-HcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-
Confidence 4789999999999999754 44456777665 4554322222222211 11 12345556667777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD~ 277 (277)
.+|+++|++++++++++.|..|
T Consensus 318 ~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 318 AGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cCCHHHHHHHHHHHhhcCCcch
Confidence 8999999999999999999987
No 251
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.39 E-value=0.13 Score=42.29 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=68.3
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc---C-------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVR---G-------DFAKAEELCGRAILANPSDGNILSLYA 249 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~---~al~nLA~lL~e~~---G-------d~eeA~e~~ekALeldP~n~~al~~LA 249 (277)
+..+|++-+|++..+..+...+++. ..+..-|.+++... . -+-.|+++|.+++.+.|+.+..++.+|
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 3457999999999999999998876 44555565553211 1 234689999999999999999899888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 023753 250 DLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yekALel 272 (277)
.-+-- ...|++++...+++|.+
T Consensus 86 ~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 86 SQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhhh-HHHHHHHHHHHHHHhcc
Confidence 87554 56688888888888865
No 252
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.044 Score=52.80 Aligned_cols=71 Identities=14% Similarity=0.070 Sum_probs=61.5
Q ss_pred HHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 200 IEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 200 LeldP--~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
++.-| +++....+.|-+++ +.|+|++|++-|+.|++..-.++-+-+++|.+.+. .++++.|+++....|+.
T Consensus 135 veQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIER 207 (459)
T ss_pred HHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence 34445 56778889998887 89999999999999999999999999999999999 99999999887766653
No 253
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.27 E-value=0.13 Score=55.13 Aligned_cols=93 Identities=19% Similarity=0.284 Sum_probs=72.3
Q ss_pred hHHHHHHhCCCcHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKM----------IEANPG----------NALLLGNYARFLKEVRGDFAKAEELCGRAI-- 235 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekA----------LeldP~----------n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL-- 235 (277)
.|.+.+++.+|.+.|++||+|+ |.-+|. ++..|..+|.++ +..|+.+.|+.+|..|-
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhhhh
Confidence 3447777889999999999874 333443 345677778766 59999999999998764
Q ss_pred -------------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 236 -------------------LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 236 -------------------eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.....|..+.|.+|..|-+ .|++.+|+.+|.+|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 2345688889999999988 99999999999987543
No 254
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.12 Score=53.19 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=76.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHHcCC
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY------ADLIWQAHKD 258 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L------A~ll~~~~Gd 258 (277)
..++...+...++.++..||++..++.+++..+......+..+....+.|....|+|.+++..+ +.++-. .++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 157 (620)
T COG3914 79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGR 157 (620)
T ss_pred ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hcc
Confidence 3477788999999999999999999999999886444455666666677999999999998877 776666 899
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
..+|..++++++.+.|.+
T Consensus 158 ~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 158 TAEAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999998864
No 255
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.22 E-value=0.27 Score=44.72 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 023753 187 HGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRG--------DFAKAEELCGRAILANPSDGNILSLYADLIWQA-- 255 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~G--------d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~-- 255 (277)
.|+.+|..+|++|.+..-.. ..+.++++.++. .+ +..+|...|.+|.... ++.+...+|.+|..-
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence 47889999999998875444 355777777665 23 3448999999988876 778888888877652
Q ss_pred -cCCHHHHHHHHHHHHHhC
Q 023753 256 -HKDASRAESYFDQAVKSA 273 (277)
Q Consensus 256 -~Gd~deAi~~yekALeld 273 (277)
..++++|..+|++|.+..
T Consensus 203 v~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 237889999999988764
No 256
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.18 E-value=0.051 Score=34.62 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld 238 (277)
+.++.++|.+|. ..|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYR-AQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhhhcchhhHHHHHHHHHH
Confidence 357889999997 7899999999999999863
No 257
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.14 E-value=0.2 Score=45.18 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=66.5
Q ss_pred CCcchhhHHHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHH
Q 023753 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILS 246 (277)
Q Consensus 172 ~~~~~~yY~~m~e~~Gd~deAi~~yekALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----n~~al~ 246 (277)
.++...||+. .+..-++|...|.++-... =+++...+.+|.+|. ..|.++|+.++.+|+++.+. |++++.
T Consensus 108 ~dP~llYy~W---sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~ 182 (203)
T PF11207_consen 108 QDPYLLYYHW---SRFGDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILK 182 (203)
T ss_pred CCccHHHHHh---hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 4566777774 2333467777776653322 256899999998774 78999999999999998654 599999
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 023753 247 LYADLIWQAHKDASRAES 264 (277)
Q Consensus 247 ~LA~ll~~~~Gd~deAi~ 264 (277)
.||.++.. +++++.|--
T Consensus 183 sLas~~~~-~~~~e~AYi 199 (203)
T PF11207_consen 183 SLASIYQK-LKNYEQAYI 199 (203)
T ss_pred HHHHHHHH-hcchhhhhh
Confidence 99999999 999998843
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.13 E-value=0.28 Score=49.78 Aligned_cols=91 Identities=18% Similarity=0.089 Sum_probs=69.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCC---
Q 023753 185 NNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADLIWQAHKD--- 258 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~--n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel-dP~n~~al~~LA~ll~~~~Gd--- 258 (277)
..|+.++|++.|+..++.+|. +..++.++..+|. ..+.|.++...+.+==++ -|+.+...+.-|.+..+..+|
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs 349 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFS 349 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccC
Confidence 459999999999999998876 4578999999887 689999999999885333 256677666666555442333
Q ss_pred ------------HHHHHHHHHHHHHhCCCC
Q 023753 259 ------------ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ------------~deAi~~yekALeldPdD 276 (277)
...|++.+.+|++.||.-
T Consensus 350 ~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 350 PEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred chhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 135789999999999963
No 259
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.3 Score=45.90 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=65.0
Q ss_pred hhhHH--HHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 023753 176 SGSNN--NYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILAN-----PSDG 242 (277)
Q Consensus 176 ~~yY~--~m~e~~Gd~deAi~~yekALeldP~n~~------al~nLA~lL~e~~Gd~eeA~e~~ekALeld-----P~n~ 242 (277)
..|.+ ..|....++++|..++.+|++-..+|.. ++-..+.++. ....+.++..+|++|..+. |+-+
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 34444 3455568999999999999976655532 2223333343 5678999999999999873 4433
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 243 N-ILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 243 ~-al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
. ++-.-|. ..+ ..+.++|+++|++++++-
T Consensus 111 AmaleKAak-~le-nv~Pd~AlqlYqralavv 140 (308)
T KOG1585|consen 111 AMALEKAAK-ALE-NVKPDDALQLYQRALAVV 140 (308)
T ss_pred HHHHHHHHH-Hhh-cCCHHHHHHHHHHHHHHH
Confidence 3 3333444 445 689999999999998764
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.95 E-value=0.097 Score=51.53 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=69.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGN----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------SDGNIL 245 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n----------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP------~n~~al 245 (277)
++....|+++|..+..+|.++--.. ..+++.++..|. .+|++-.|.+++++|.++.- -.+.-+
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 3344467889999999998874322 356788888887 79999999999999988742 234456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 246 SLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 246 ~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
..+|++|.. .+|.+.|-.-|++|...
T Consensus 250 ~~~aDIyR~-~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 250 LCFADIYRS-RGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHh-cccHhHHHHHHHHHHHH
Confidence 678999999 99999999999999754
No 261
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.94 E-value=0.031 Score=53.95 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L 248 (277)
+.+.+--..|-++++.+|.|...|.--+.+-+....+++.|...|.+++..||++|..|+.+
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 44445555555555555555555543222222244555555555555555555555555443
No 262
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.88 E-value=0.093 Score=52.39 Aligned_cols=85 Identities=8% Similarity=-0.035 Sum_probs=66.7
Q ss_pred CCCcHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEAN----PGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------SDGNILSLYADLIW 253 (277)
Q Consensus 186 ~Gd~deAi~~yekALeld----P~n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP------~n~~al~~LA~ll~ 253 (277)
.++++.|+++|++++.+. ... +...+.+|..|. ..+++++|+.|+++-++|.- ....++..||..+-
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 367889999999876542 222 345667888887 67899999999999776643 24567888999988
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 023753 254 QAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 254 ~~~Gd~deAi~~yekALel 272 (277)
. .+..++|+.+.++.+++
T Consensus 327 a-lg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 327 A-LGEHRKALYFAELHLRS 344 (639)
T ss_pred h-hhhHHHHHHHHHHHHHH
Confidence 8 99999999999998876
No 263
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.15 Score=47.58 Aligned_cols=88 Identities=20% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-H-----HHHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-I-----LSLYADLIWQ 254 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-a-----l~~LA~ll~~ 254 (277)
.+..+|+.++++||++.-+-. ..+..+|.+|-....++++|+.+|++|-+.-..+-. . +.-.|....+
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 467788888888888865433 334577877753347999999999999887554321 1 2233454555
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 023753 255 AHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 255 ~~Gd~deAi~~yekALeldPd 275 (277)
.++|.+|+..|++.....-+
T Consensus 167 -leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 167 -LEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred -HHHHHHHHHHHHHHHHHhcc
Confidence 78999999999998765433
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.78 E-value=0.42 Score=44.04 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=75.9
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------------ 240 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeldP~----n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~------------ 240 (277)
..+.++....|.++.|..++.++...++. .+.+.+.++.+++ ..|+..+|+..++..+.....
T Consensus 150 l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF02259_consen 150 LKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELK 228 (352)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHh
Confidence 34556777789999999999999987632 4678888999998 789999999999988882111
Q ss_pred ----------------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCC
Q 023753 241 ----------------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 241 ----------------------n~~al~~LA~ll~~~~------Gd~deAi~~yekALeldPdD 276 (277)
.+.++..+|..... . +++++++.+|++|++++|+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 229 SGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred hccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhH
Confidence 13345556666656 5 88899999999999998863
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.17 Score=47.99 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC--CCHHHHHHHHHHHHHHcCC
Q 023753 186 NHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAIL----ANP--SDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 186 ~Gd~deAi~~yekALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe----ldP--~n~~al~~LA~ll~~~~Gd 258 (277)
.+.|.-.+..|.+.++.+ |.++.....++.+-. +.||.+.|..||++.-+ ++. .+..++.+.+.++.- .++
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn 267 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNN 267 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccc
Confidence 467778889999999998 678888999999875 89999999999995433 332 355678888999988 999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 023753 259 ASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 259 ~deAi~~yekALeldPdD 276 (277)
+.+|...|.+.+..+|.+
T Consensus 268 ~a~a~r~~~~i~~~D~~~ 285 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRN 285 (366)
T ss_pred hHHHHHHHhhccccCCCc
Confidence 999999999999999876
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.4 Score=48.69 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=56.9
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
+.+.+.+--..|.++++.+|+++..|.--|...++..-+.+.|.+.|.++|+.+|+++..|..+-.+
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 4455788889999999999999999998887777665669999999999999999999987765443
No 267
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.36 E-value=0.26 Score=51.40 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=75.1
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADLIWQA 255 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n~~al~~LA~ll~~~ 255 (277)
+|..+.+.-|-++...+.|+++|.+.---|....|||.+|. ...-+++|.+.|++-|.+-+ .-.+.|..|-..+...
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 55566677788999999999999999999999999999885 67778999999999988864 4445555443222221
Q ss_pred --cCCHHHHHHHHHHHHHhCCC
Q 023753 256 --HKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 256 --~Gd~deAi~~yekALeldPd 275 (277)
.-..+.|..+|++||...|-
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCH
Confidence 34678999999999988773
No 268
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.19 E-value=0.37 Score=46.71 Aligned_cols=94 Identities=7% Similarity=0.033 Sum_probs=72.6
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNILSLYADLIWQ 254 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~-----n~~al~~LA~ll~~ 254 (277)
..+..+|-+..|.++++-.+.+||. ||.....+-.+|..+.++|+--++.++........ -|...+..|.+++.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 5555679999999999999999999 88777766777777888898888888776552111 23455667777777
Q ss_pred HcCCH---------------HHHHHHHHHHHHhCCC
Q 023753 255 AHKDA---------------SRAESYFDQAVKSAPD 275 (277)
Q Consensus 255 ~~Gd~---------------deAi~~yekALeldPd 275 (277)
.++. ++|...+.+|+..-|.
T Consensus 191 -l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 191 -LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred -hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 6776 8999999999988773
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.18 E-value=0.62 Score=42.87 Aligned_cols=99 Identities=9% Similarity=-0.053 Sum_probs=74.0
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHh-CCC---------------------------------CHHHHHHHHHHHHHHc
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-NPG---------------------------------NALLLGNYARFLKEVR 221 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALel-dP~---------------------------------n~~al~nLA~lL~e~~ 221 (277)
...+.+++-..|+..+|+..++..+.. ... -+.++..+|.+.. ..
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~ 265 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-EL 265 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH-hh
Confidence 344567777889999999999888881 110 0245666776664 45
Q ss_pred ------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHhCCC
Q 023753 222 ------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD----------------ASRAESYFDQAVKSAPD 275 (277)
Q Consensus 222 ------Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd----------------~deAi~~yekALeldPd 275 (277)
.+.+++..+|++|++++|....+++.+|.++...... ...|+..|-+|+...+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7899999999999999999999999999887652111 13588999999988876
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.16 E-value=0.17 Score=51.51 Aligned_cols=85 Identities=22% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 186 NHGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEV---RG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 186 ~Gd~deAi~~yekALe-----ldP~n~~al~nLA~lL~e~---~G-d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
..|.++|+.+|++|.. ..-.++.+.+.+|.+|... .. |+..|..+|.+|.+.. ++.+.+.+|.++..-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 3577888888888876 1112556777788877520 12 6788888888887764 4455666777776622
Q ss_pred --CCHHHHHHHHHHHHHh
Q 023753 257 --KDASRAESYFDQAVKS 272 (277)
Q Consensus 257 --Gd~deAi~~yekALel 272 (277)
.|+.+|.++|..|.+.
T Consensus 340 ~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKA 357 (552)
T ss_pred ccccHHHHHHHHHHHHHc
Confidence 3567888888887643
No 271
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.07 E-value=0.46 Score=36.87 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 187 HGSSSTDAYYEKMIEANPG----N-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~----n-----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
+++.+|++.+.+.+..-.. . ..++.++|.+.. ..|++++|+..+++||.+....
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHH
Confidence 5666665555555443211 1 244555565554 5566666666666666665544
No 272
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.99 E-value=0.048 Score=54.62 Aligned_cols=61 Identities=18% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.-.. ..++|+.|+..|-+||+++|+++.++.+-+.+++. .++|..|+.-+.+||+++|..
T Consensus 11 an~~l-~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 11 ANEAL-KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTY 71 (476)
T ss_pred Hhhhc-ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchh
Confidence 44343 57899999999999999999999999999988888 999999999999999999964
No 273
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.92 E-value=1 Score=42.69 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 224 ~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+..+.+|++||+.+|++...+..+-.++.+ ..+.++..+-+++++..+|++
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l~~~we~~l~~~~~~ 98 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKLAKKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCC
Confidence 4677889999999999998888887777777 778888888999999998876
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.84 E-value=0.14 Score=50.45 Aligned_cols=87 Identities=16% Similarity=0.011 Sum_probs=70.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------DGNILSLY 248 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----------n~~al~~L 248 (277)
..+.+++++++|++|+.+.-++. .+...++.++. ..+|+++|+.+..+|+++-.. ...+++.+
T Consensus 134 gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 134 GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM 212 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence 35788999999999998865543 46778888776 789999999999999987432 24567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 249 ADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 249 A~ll~~~~Gd~deAi~~yekALeld 273 (277)
+..+.. +|+.-.|.++.+.|.++.
T Consensus 213 aValR~-~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 213 AVALRL-LGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHH-hcccccHHHHHHHHHHHH
Confidence 888887 999999999999998763
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.23 E-value=1.1 Score=38.76 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=65.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
..+.++++..+..+--+.|+.+.+...-++++. ..|++.+|+..|+....-.+..+.....++.|++. ++|.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~ 95 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE 95 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence 578889999999888899999999888888775 89999999999999999998989998999999988 88865
No 276
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.15 E-value=0.095 Score=54.18 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=78.7
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n~--~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
..+|+..+|..+|..|+-+-|... .++..+|.+|. ..|...+|--.+..|+.-.|....-++.++.++.+ .+++..
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~-RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am-l~~~N~ 301 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLH-RAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM-LGEYNH 301 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHH-HcccccchhheeehhccCCccccccceeHHHHHHH-Hhhhhh
Confidence 357999999999999999877654 46778899887 89999999999999999888877778999999998 999999
Q ss_pred HHHHHHHHHHhCCC
Q 023753 262 AESYFDQAVKSAPD 275 (277)
Q Consensus 262 Ai~~yekALeldPd 275 (277)
...+|+.|.+..|.
T Consensus 302 S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 302 SVLCYDHALQARPG 315 (886)
T ss_pred hhhhhhhhhccCcc
Confidence 99999999988874
No 277
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.6 Score=46.29 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD---ASRA 262 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd---~deA 262 (277)
-+++-+.+...+|+.+|+...+|+...+++. +.. ++..-++.+++++++||.|..+|.+-=.++-+.... ..+=
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~-~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQ-KNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 4567788999999999999999999999886 444 478899999999999999988877655555442333 5666
Q ss_pred HHHHHHHHHhCCCCC
Q 023753 263 ESYFDQAVKSAPDDW 277 (277)
Q Consensus 263 i~~yekALeldPdD~ 277 (277)
+++..++|..++.|+
T Consensus 169 l~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNY 183 (421)
T ss_pred HHHHHHHHhccchhh
Confidence 889999998888764
No 278
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.00 E-value=0.18 Score=51.29 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=63.8
Q ss_pred HHHHhCCCcHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hC----
Q 023753 181 NYSNNNHGSSSTDAYYEKM-IEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL---------AN---- 238 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekA-LeldP~--------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe---------ld---- 238 (277)
+.+...|++.+|.+.+... |...|. .-.+|+|+|.+.+ ..+.|..+..+|.+|++ +.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 4455567788877776544 344444 1245778887776 67888888888888885 11
Q ss_pred -----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 239 -----PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 239 -----P~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
....+++|+.|..|+. .|+...|-++|.+|+..
T Consensus 327 ~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHH
Confidence 1245678888888888 88888888888888865
No 279
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.98 E-value=0.99 Score=43.78 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=59.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHH---HHHHH
Q 023753 198 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------------------------NPSDGN---ILSLY 248 (277)
Q Consensus 198 kALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------------------------dP~n~~---al~~L 248 (277)
..|+.+|-+...+..++.++. .+||++.|.+++++||-. .+.|.. +++.+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~-~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYR-QQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 445778999999999999887 789999999999988632 122322 34455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Q 023753 249 ADLIWQAHKDASRAESYFDQAVKSAPD-D 276 (277)
Q Consensus 249 A~ll~~~~Gd~deAi~~yekALeldPd-D 276 (277)
...+.+ .|.+..|.++.+-.+.++|. |
T Consensus 110 i~~L~~-RG~~rTAlE~~KlLlsLdp~~D 137 (360)
T PF04910_consen 110 IQSLGR-RGCWRTALEWCKLLLSLDPDED 137 (360)
T ss_pred HHHHHh-cCcHHHHHHHHHHHHhcCCCCC
Confidence 666666 89999999999999999998 5
No 280
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.92 E-value=1 Score=40.97 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--------
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV---RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-------- 257 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~---~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G-------- 257 (277)
...|+..|++|-... ++.+.+++|.+|..- ..|+.+|..+|.+|.+... ..+++.++ +++. .+
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~-~g~g~~~~~~ 244 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYL-NGEGVKKAAF 244 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHh-cCCCchhhhh
Confidence 347999999998877 788888999877521 2389999999999999887 88888888 5554 45
Q ss_pred -------CHHHHHHHHHHHHHhCC
Q 023753 258 -------DASRAESYFDQAVKSAP 274 (277)
Q Consensus 258 -------d~deAi~~yekALeldP 274 (277)
+...|..++.++....+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCC
Confidence 88899999998876654
No 281
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.75 E-value=1.4 Score=44.48 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=45.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 216 FLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 216 lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
+++ .+|+|.++.-|..-..+++| .+.++..+|.+++. ..+|++|..++..
T Consensus 471 yLy-sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 471 YLY-SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQK 520 (549)
T ss_pred HHH-hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHh
Confidence 354 67899999999999999999 99999999999999 9999999999875
No 282
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.43 Score=46.44 Aligned_cols=67 Identities=12% Similarity=-0.040 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~----~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..+-.-|+-|+ +.++|..|+.+|.+.|+.+-.|+ ..|.+-|.+.+. .++|..|+.-..+|+.++|.+
T Consensus 82 en~KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 82 ENYKEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcch
Confidence 44455678787 78999999999999999876544 446777888888 899999999999999999975
No 283
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.57 E-value=0.41 Score=31.48 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 023753 244 ILSLYADLIWQAHKDASRAESY--FDQAVKSAPDD 276 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~--yekALeldPdD 276 (277)
.++.+|..+.+ +|++++|+.+ |+-+..++|.|
T Consensus 3 ~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 34455555555 5555555555 33555555543
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.53 E-value=1.3 Score=44.28 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL-KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL-~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
+.....|+++.|.+-|+-++. ||.--. +...+.++ .+..|+++.|..|.++|....|.-+.+....-..... .||+
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-dPEtRl-lGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-~gdW 204 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-DPETRL-LGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-AGDW 204 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-ChHHHH-HhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-cCCh
Confidence 344456999999999997765 554332 22223222 2367899999999999999999999887766666667 8999
Q ss_pred HHHHHHHHHHHH
Q 023753 260 SRAESYFDQAVK 271 (277)
Q Consensus 260 deAi~~yekALe 271 (277)
+.|+++.+...+
T Consensus 205 d~AlkLvd~~~~ 216 (531)
T COG3898 205 DGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHHH
Confidence 999999987664
No 285
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=0.54 Score=44.21 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=53.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..++++.|..+.++.+.++|+++.-+..-|.+|.+ .+.+.-|++-+...++.-|++
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCc
Confidence 67899999999999999999999999999999999 999999999999999999986
No 286
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=1 Score=45.94 Aligned_cols=90 Identities=16% Similarity=0.049 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHc
Q 023753 187 HGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSD----GNILSLYADLIWQAH 256 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld---P~n----~~al~~LA~ll~~~~ 256 (277)
.++.+++++++..+...|.+ +..+..+|.+++...++++-|..++++|..+- |+. .+++..++.++.+..
T Consensus 23 PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~ 102 (629)
T KOG2300|consen 23 PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA 102 (629)
T ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence 37889999999999999876 35577889888878999999999999999875 333 345677889988844
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 023753 257 KDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 257 Gd~deAi~~yekALeldPdD 276 (277)
..+..|...+++||++..+.
T Consensus 103 ~s~~~~KalLrkaielsq~~ 122 (629)
T KOG2300|consen 103 QSFPPAKALLRKAIELSQSV 122 (629)
T ss_pred CCCchHHHHHHHHHHHhcCC
Confidence 58899999999999987553
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.28 E-value=1 Score=45.85 Aligned_cols=82 Identities=15% Similarity=0.027 Sum_probs=63.9
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRA 262 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~--Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~---~Gd~deA 262 (277)
++..|..+|.+|-++.. +.+.+.+|.++..-. .|+.+|.++|.+|.+. .+..+++.+|.+|..- ..+...|
T Consensus 308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 56789999999987765 555677787665222 4678999999999774 5788889999988761 2378999
Q ss_pred HHHHHHHHHhC
Q 023753 263 ESYFDQAVKSA 273 (277)
Q Consensus 263 i~~yekALeld 273 (277)
..+|.+|.+..
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 99999999887
No 288
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.10 E-value=1.1 Score=48.14 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.|..++|..+++..-..-+++-..+..+-.+|. ..+++++|..+|++|+..+|. -..++.+=.+|.+ .++|.
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk 127 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYK 127 (932)
T ss_pred hcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHH
Confidence 466677776555555555666666666666665 567777777777777777776 5555555555555 45554
No 289
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.00 E-value=1.6 Score=45.04 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=81.1
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHc
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQAH 256 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld-P~n~~al~~LA~ll~~~~ 256 (277)
+|.......|+++.....|++++.--.....+|.+|+..+. ..|+..-|...+.+|.++. |.-+..+...|.+--. .
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~-~ 379 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES-N 379 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh-h
Confidence 44445556799999999999999999999999999999886 7799999999999988875 6677777777777766 8
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 023753 257 KDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 257 Gd~deAi~~yekALeldPd 275 (277)
|+++.|..+|++..+--|+
T Consensus 380 ~n~~~A~~~lq~i~~e~pg 398 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPG 398 (577)
T ss_pred ccHHHHHHHHHHHHhhCCc
Confidence 9999999999999877665
No 290
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=2.2 Score=44.18 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=71.1
Q ss_pred hhhHHHHHH--hCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHH
Q 023753 176 SGSNNNYSN--NNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPSDGNILSL 247 (277)
Q Consensus 176 ~~yY~~m~e--~~Gd~deAi~~yekALeldP~-n~~al~nLA~lL~e~~Gd~eeA~e~~ekA-----LeldP~n~~al~~ 247 (277)
..-|+.|.. ..|-+..|.++++-.+.++|. ||.+...+..+|.....+|+==++.++.+ +..-|+.++.+ .
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-A 421 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-A 421 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-H
Confidence 334444433 458899999999999999999 99887777777776778887777777766 44456665543 4
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q 023753 248 YADLIWQAHKD---ASRAESYFDQAVKSAP 274 (277)
Q Consensus 248 LA~ll~~~~Gd---~deAi~~yekALeldP 274 (277)
+|.+|.. ..+ .+.|...+.+|+..-|
T Consensus 422 lA~f~l~-~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 422 LARFFLR-KNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHh-cCChhhHHHHHHHHHHHHHhCc
Confidence 6667766 333 5689999999999887
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.69 E-value=0.98 Score=42.69 Aligned_cols=80 Identities=18% Similarity=0.012 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
+..-+...+++++. ....++..++..+. ..++++.++..+++.+..+|.+-.+|..+-.+|+. .|+...|+..|++
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~-~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALI-ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHH
Confidence 33434444444332 23456777777775 78899999999999999999999988888888888 8999999999988
Q ss_pred HHHh
Q 023753 269 AVKS 272 (277)
Q Consensus 269 ALel 272 (277)
.-..
T Consensus 213 l~~~ 216 (280)
T COG3629 213 LKKT 216 (280)
T ss_pred HHHH
Confidence 7653
No 292
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.58 E-value=0.034 Score=53.87 Aligned_cols=56 Identities=29% Similarity=0.305 Sum_probs=53.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..|.+++|+++|.+||+++|..+..|..-+.+++. +++...|+.-|..|++++|+.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCccc
Confidence 46889999999999999999999999999999999 999999999999999999974
No 293
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.36 E-value=0.5 Score=28.11 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARF 216 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~l 216 (277)
+.+.|...|++++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34556666666666666666666665543
No 294
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.15 E-value=0.21 Score=48.39 Aligned_cols=84 Identities=5% Similarity=0.099 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 192 Ai~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
-+-.|.++-...|+++..|..|+.+.. +.+-|.+--..|.+++...|.|.+.|..-+..-+...++++.|...|.++++
T Consensus 92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR 170 (435)
T COG5191 92 KIFELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR 170 (435)
T ss_pred eeEeeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence 344566777778999999999998664 7888999999999999999999999887444433338999999999999999
Q ss_pred hCCCC
Q 023753 272 SAPDD 276 (277)
Q Consensus 272 ldPdD 276 (277)
++|++
T Consensus 171 ~N~~~ 175 (435)
T COG5191 171 MNSRS 175 (435)
T ss_pred cCCCC
Confidence 99986
No 295
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.95 E-value=0.78 Score=30.13 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSD 241 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~--~ekALeldP~n 241 (277)
+.++.+|..++ .+|++++|+.+ |+-+..+++.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 56778888887 79999999999 55888888865
No 296
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.71 E-value=1.4 Score=34.17 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=43.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----C-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 220 VRGDFAKAEELCGRAILANPS----D-----GNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~----n-----~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
..+||.+|.+.+.+.+..... . ..++.++|.+... .|++++|+..++.||++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLA 71 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 579999998888777765432 2 4677889999998 999999999999999874
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.48 E-value=0.34 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 244 ILSLYADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~ye 267 (277)
+++.+|.+++. .|++++|+..++
T Consensus 3 a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHh
Confidence 45556666665 666666665554
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.44 E-value=0.95 Score=38.89 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIE-ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (277)
Q Consensus 187 Gd~deAi~~yekALe-ldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll 252 (277)
.+..+.+.+++..++ -.|.. -+.++-+|.-++ +.++|++|+.|++..++.+|+|.++...--.+.
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELKETIE 115 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 567789999999997 55543 356666777676 789999999999999999999999876544433
No 299
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.40 E-value=0.85 Score=27.05 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753 222 GDFAKAEELCGRAILANPSDGNILSLYADLI 252 (277)
Q Consensus 222 Gd~eeA~e~~ekALeldP~n~~al~~LA~ll 252 (277)
+++++|...|++++...|.++.+|..++.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4678999999999999999999998887653
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.38 E-value=3.3 Score=36.09 Aligned_cols=89 Identities=12% Similarity=0.010 Sum_probs=61.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH----HHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILS----LYAD 250 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n~~al~----~LA~ 250 (277)
...|...|++++|+++|.++.+..-.. ...++++..+.. ..+|+..+..++.+|-.+-- .+..... .-|.
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 355566799999999999988765443 245556666554 57899999999998876532 3333322 2355
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 023753 251 LIWQAHKDASRAESYFDQAV 270 (277)
Q Consensus 251 ll~~~~Gd~deAi~~yekAL 270 (277)
.++. .++|.+|...|-.++
T Consensus 122 ~~l~-~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 122 ANLA-QRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH-hchHHHHHHHHHccC
Confidence 5555 899999998887664
No 301
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=90.37 E-value=2 Score=36.45 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=60.0
Q ss_pred CCCcHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHH---
Q 023753 186 NHGSSSTDAYYEKMIEANPGN------------ALLLGNYARFLKEVRGDFAKAEELCGRAIL-------ANPSDGN--- 243 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALe-------ldP~n~~--- 243 (277)
.+-|++|...|++|+++...- +..+..|+..+. ..|+|++++...++|+. ++.+...
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 478999999999999874322 345667777776 78999887777776664 4444433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 244 -ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 244 -al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
+.++-|..+.. .|+.++|+..|+.+.+.
T Consensus 101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence 34556777777 99999999999998764
No 302
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.36 E-value=1.5 Score=45.20 Aligned_cols=72 Identities=21% Similarity=0.215 Sum_probs=54.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 197 EKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 197 ekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
++-|+.||.|..+|+.|-.-+. .+-++++.+.|++.+...|..+.+|..+..-.+. .++|+.-+.+|.++|.
T Consensus 10 ~~rie~nP~di~sw~~lire~q--t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQ--TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHc--cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence 6677778888888887776543 4477888888888888888888888777777776 7788877777777764
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.24 E-value=2.1 Score=46.33 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=48.9
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMI---------------------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekAL---------------------eldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA 234 (277)
..+|+++++..|+.+.|+.+|..|- .....|-.+-+.+|+.| +..|++.+|+.+|.+|
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 3466788888999999999998753 33566778899999988 5899999999999887
Q ss_pred HHh
Q 023753 235 ILA 237 (277)
Q Consensus 235 Lel 237 (277)
-..
T Consensus 994 qaf 996 (1416)
T KOG3617|consen 994 QAF 996 (1416)
T ss_pred HHH
Confidence 544
No 304
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.24 E-value=1.4 Score=46.15 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=75.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPG------------------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~------------------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
.|-....+++.|..+.++|..+-.. ...+|..|+.+. +..|-++.....|++.|.+.---|
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle-Es~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE-ESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHhcCCH
Confidence 4444557888888888888765222 124678888866 588999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
....|+|.++-+ ..-+++|-+.|++.|.+.|
T Consensus 512 qii~NyAmfLEe-h~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 512 QIIINYAMFLEE-HKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHcCCccCC
Confidence 999999999988 8899999999999988754
No 305
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.03 E-value=1 Score=45.95 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHHHH-----h----CC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIE-----A----NP---------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (277)
Q Consensus 186 ~Gd~deAi~~yekALe-----l----dP---------~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~ 247 (277)
.+.|..+..+|++|++ + .| ..-.++||.|..|. ..|+.-.|.+||.+|+..--.||..|..
T Consensus 296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~L-h~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYL-HSGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHH-hcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4788899999999996 1 11 22468999998876 8999999999999999999999999999
Q ss_pred HHHHHHH
Q 023753 248 YADLIWQ 254 (277)
Q Consensus 248 LA~ll~~ 254 (277)
+|.+++.
T Consensus 375 lAEcCim 381 (696)
T KOG2471|consen 375 LAECCIM 381 (696)
T ss_pred HHHHHHH
Confidence 9999876
No 306
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.91 E-value=7.5 Score=35.11 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------
Q 023753 186 NHGSSSTDAYYEKMIEANPGNA--LLLGNYARFLKEVRGDFAKAEELCGRAILA-------------------------- 237 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~--~al~nLA~lL~e~~Gd~eeA~e~~ekALel-------------------------- 237 (277)
.+..++|+..|...-+-.-.+. .+....|.++. ..|+-..|+.+|..+-..
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3778889888887766665543 44556666665 788888888888876543
Q ss_pred -------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 238 -------------NPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 238 -------------dP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
+|-...+.-.||...|+ .|++.+|..+|.+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~k-agd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYK-AGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHh-ccchHHHHHHHHHHHc
Confidence 23333444556777788 8999999999988764
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.81 E-value=4.1 Score=37.58 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=57.6
Q ss_pred hCCCcHHHHHHHHHHHHhC----CCCH----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---CC-------
Q 023753 185 NNHGSSSTDAYYEKMIEAN----PGNA----LLLGNYARFLKEVRG-DFAKAEELCGRAILA----NP---SD------- 241 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeld----P~n~----~al~nLA~lL~e~~G-d~eeA~e~~ekALel----dP---~n------- 241 (277)
.+|+++.|..+|.|+-... |+.. ..++++|.-+. ..+ +++.|...+++|+++ .+ ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4588899999998886544 3332 45667776665 567 899999999998887 22 11
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCC
Q 023753 242 GNILSLYADLIWQAHKDAS---RAESYFDQAVKSAPD 275 (277)
Q Consensus 242 ~~al~~LA~ll~~~~Gd~d---eAi~~yekALeldPd 275 (277)
..++..++.+|+. .+.++ +|+.+++.+-...|+
T Consensus 84 ~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 84 LSILRLLANAYLE-WDTYESVEKALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCC
Confidence 2346667777777 56544 455555555444443
No 308
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=2.3 Score=44.70 Aligned_cols=83 Identities=7% Similarity=-0.011 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
.+|..+++.|...+..-|.|. ....+++.+|. ...+.++|.++++.|-+.+|.++.-...+-.+... .+.-+
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL-~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~Se 445 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYL-KLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcchH
Confidence 467778888888877766553 34556666664 67788888888888888888877765555555555 57777
Q ss_pred HHHHHHHHHHH
Q 023753 261 RAESYFDQAVK 271 (277)
Q Consensus 261 eAi~~yekALe 271 (277)
+|+.+..+...
T Consensus 446 ~AL~~~~~~~s 456 (872)
T KOG4814|consen 446 EALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHh
Confidence 77777665543
No 309
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.14 E-value=2 Score=46.85 Aligned_cols=92 Identities=13% Similarity=-0.056 Sum_probs=72.9
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRG------DFAKAEELCGRAILANPSDGNILSLYADLIW 253 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~G------d~eeA~e~~ekALeldP~n~~al~~LA~ll~ 253 (277)
+.+...|++|+..|++.-.--|.- .+|.+..|..+.++.. .+++|+..|++.-. .|.-|--|.-.|.+|.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 563 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQ 563 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHH
Confidence 334578999999999999999875 4788888887754332 57788888877643 4666666777888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 023753 254 QAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 254 ~~~Gd~deAi~~yekALeldPdD 276 (277)
. +++|++-+++|.-|++..|+.
T Consensus 564 ~-~~~~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 564 R-LGEYNEEIKSLLLALKRYSQH 585 (932)
T ss_pred H-hhhHHHHHHHHHHHHHhcCCC
Confidence 8 999999999999999999875
No 310
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=1.8 Score=40.70 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=59.3
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
+....+++.|..+-++.+.++|+++.-+..-|.+|. +.+.+.-|++-++..++.-|+++.+...-+.+
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 334578899999999999999999999999999887 89999999999999999999999876554443
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.82 E-value=3.2 Score=36.24 Aligned_cols=56 Identities=20% Similarity=0.051 Sum_probs=51.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
..++.+.++..+...-.+.|..+.+-..-|++++. .+++.+|+.+|+.+.+..|..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCC
Confidence 56799999999999999999999999999999999 999999999999987776653
No 312
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=3.6 Score=39.12 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=81.0
Q ss_pred hhhHHHHHHh--CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 023753 176 SGSNNNYSNN--NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFA-KAEELCGRAILANPSDGNILSLYADLI 252 (277)
Q Consensus 176 ~~yY~~m~e~--~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~e-eA~e~~ekALeldP~n~~al~~LA~ll 252 (277)
...|+..+.. .-++.+-+.++.+.++-+|.|..+|...-.++ +..+++. .-++..++++..+..|.-||.+--+++
T Consensus 79 VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv-e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 79 VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV-ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVL 157 (318)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH-HHhcCcccchHHHHHHHHhccccchhhhHHHHHHH
Confidence 3455543332 26788899999999999999999999877666 4788888 889999999999999999999988888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 023753 253 WQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 253 ~~~~Gd~deAi~~yekALeldPd 275 (277)
.. .++++.-+.+..+.|+.+-.
T Consensus 158 r~-F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 158 RF-FKDYEDELAYADELLEEDIR 179 (318)
T ss_pred HH-HhhHHHHHHHHHHHHHHhhh
Confidence 88 78899999999988877643
No 313
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.40 E-value=4.6 Score=41.52 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHHcCCH
Q 023753 190 SSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNI----LSLYADLIWQAHKDA 259 (277)
Q Consensus 190 deAi~~yekALeldP~n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP--~n~~a----l~~LA~ll~~~~Gd~ 259 (277)
..|+.+++-+++..+-. +.+++.||.+|.+...+++.|+.+++|++.+.. +..+. .+.++.++.+ .+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence 46788888777422222 457888888888788899999999999988774 33222 3345666666 4444
Q ss_pred HHHHHHHHHHHHhC
Q 023753 260 SRAESYFDQAVKSA 273 (277)
Q Consensus 260 deAi~~yekALeld 273 (277)
. |+.+++++|+..
T Consensus 117 ~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 117 A-ALKNLDKAIEDS 129 (608)
T ss_pred H-HHHHHHHHHHHH
Confidence 4 888888888654
No 314
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.26 E-value=5.1 Score=41.42 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
+.+........|...|.+|=+.- +.+..+...+-.++ ..+|.+-|...|+--++.-++.+.+-+.+..++.. .++
T Consensus 374 n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~--cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~-lNd 450 (656)
T KOG1914|consen 374 NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY--CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH-LND 450 (656)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH--hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH-hCc
Confidence 34444456778888888885533 22333333333333 57899999999999999999999988888888888 888
Q ss_pred HHHHHHHHHHHHHh
Q 023753 259 ASRAESYFDQAVKS 272 (277)
Q Consensus 259 ~deAi~~yekALel 272 (277)
-..|..+|++++..
T Consensus 451 d~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 451 DNNARALFERVLTS 464 (656)
T ss_pred chhHHHHHHHHHhc
Confidence 89999999999875
No 315
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.03 E-value=5.7 Score=36.05 Aligned_cols=77 Identities=21% Similarity=0.114 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHH
Q 023753 191 STDAYYEKMIEANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 191 eAi~~yekALeldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
+.+...++.+..+|.+.. +...+|..+. ..+++++|+..++.++..--+. +.+-.++|.++++ ++.+++|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v-e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEV-EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHH
Confidence 555555666666655542 3345566666 5799999999999998753332 3345678999999 999999999
Q ss_pred HHHHH
Q 023753 265 YFDQA 269 (277)
Q Consensus 265 ~yekA 269 (277)
.++..
T Consensus 148 ~L~t~ 152 (207)
T COG2976 148 TLDTI 152 (207)
T ss_pred HHhcc
Confidence 88754
No 316
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=2.3 Score=44.05 Aligned_cols=89 Identities=16% Similarity=-0.074 Sum_probs=66.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nL--A~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
+.-.-|+..+..-+.++|.++..+... ...+. ..++...|...+..++..||+++.++.+|+..+......+.-+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~ 123 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLA-PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD 123 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhcc-ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH
Confidence 334447777888888999999875443 44443 677888999999999999999999999999888773344455555
Q ss_pred HHHHHHHhCCCC
Q 023753 265 YFDQAVKSAPDD 276 (277)
Q Consensus 265 ~yekALeldPdD 276 (277)
+.+.|....|++
T Consensus 124 ~~~~a~~~~~~~ 135 (620)
T COG3914 124 ISEIAEWLSPDN 135 (620)
T ss_pred HHHHHHhcCcch
Confidence 556688888875
No 317
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.85 E-value=3.1 Score=39.34 Aligned_cols=68 Identities=13% Similarity=0.056 Sum_probs=55.8
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~ 246 (277)
.|-+-+...++|-++++++...|..+|.|..|++..|.+.. ..=+.++|.+-|.++++++|.-+.+..
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha-a~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA-AVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 34444444567779999999999999999999999999876 556789999999999999998766544
No 318
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=87.33 E-value=3.2 Score=38.40 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=43.2
Q ss_pred hHHHHHHhC-CC-----cHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 178 SNNNYSNNN-HG-----SSSTDAYYEKMIE-----ANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 178 yY~~m~e~~-Gd-----~deAi~~yekALe-----ldP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
|||-+.+.. ++ .++|...|++|++ +.|.+|. ...|++.+|++..++.++|.+..++|+..
T Consensus 127 YyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 127 YHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556555543 32 4578999999986 4578874 35678888998899999998777766653
No 319
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.29 E-value=5.2 Score=40.95 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=71.3
Q ss_pred CcchhhHHHHHHhC-CCcHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 023753 173 SGFSGSNNNYSNNN-HGSSSTDAYYEKMIEANPG-N--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------- 241 (277)
Q Consensus 173 ~~~~~yY~~m~e~~-Gd~deAi~~yekALeldP~-n--~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n------- 241 (277)
++...+..++|-.. +.++.|+..|..|+++-.. + +.+..|+|..|. ..+ +++.+|+..=.+.|.|
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-~~~---~~ed~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-RIG---DAEDLYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-Hhc---cHHHHHHHHHhcCCCCCCcchHH
Confidence 44455666666654 8999999999999987544 3 345567888776 544 4566776666677764
Q ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 242 ---GNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 242 ---~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+.+++.+|.+.+. ++++.||...+.+.++..
T Consensus 442 ~l~a~~~~v~glfaf~-qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFK-QNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhc
Confidence 4567788888888 999999999999998875
No 320
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.10 E-value=2.5 Score=38.65 Aligned_cols=60 Identities=27% Similarity=0.318 Sum_probs=41.6
Q ss_pred hHHHHHHhCCC------cHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 178 SNNNYSNNNHG------SSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 178 yY~~m~e~~Gd------~deAi~~yekALel-----dP~n~~---al~nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
||+-+.+-... .++|..+|++|+++ .|.+|. ...|++.+|++..++.++|++..++|+..
T Consensus 125 yyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 125 YYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555554422 25788888888764 677874 45678888888889999988888887653
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.93 E-value=0.81 Score=27.37 Aligned_cols=25 Identities=36% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGR 233 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ek 233 (277)
.+++++|.++. ..|++++|+..+++
T Consensus 2 ~a~~~la~~~~-~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALL-AQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHhC
Confidence 56788999997 89999999998864
No 322
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.78 E-value=4.2 Score=35.39 Aligned_cols=63 Identities=21% Similarity=0.110 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n---~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.++..+|.+|. ..||+++|+++|.++.+..... .+.+.++-.+.+. .+++..+..++.+|-.+
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence 67889999887 8999999999999988865443 3345566667777 89999999999988654
No 323
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.47 E-value=3.1 Score=36.04 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 224 ~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
.+..++..++.++..| ++.++.+++.++.. +|+.++|..+.+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCc
Confidence 3445555566666666 56677777777777 78888888888888877774
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.40 E-value=7 Score=38.58 Aligned_cols=91 Identities=16% Similarity=0.035 Sum_probs=64.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP------------------- 239 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP------------------- 239 (277)
.+.++.. .+..+-++....|+++||.-+.++..+|. +..--..+|+..|++|++..-
T Consensus 191 MQ~AWRE-Rnp~~RI~~A~~ALeIN~eCA~AyvLLAE---EEa~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 191 MQKAWRE-RNPPARIKAAYQALEINNECATAYVLLAE---EEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHHHh-cCcHHHHHHHHHHHhcCchhhhHHHhhhh---hhhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 3333333 34566678888999999999999988875 334457788888888876411
Q ss_pred ----CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 240 ----SD--GNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 240 ----~n--~~al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
.| ..+-..+|.|..+ +|+..+|++.|+...+-.|
T Consensus 267 ~rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence 11 1223467888888 9999999999998776554
No 325
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.06 E-value=1.3 Score=29.54 Aligned_cols=29 Identities=10% Similarity=0.335 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
+++..||.+-+. .++|++|+.-|+++|++
T Consensus 2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLE-NENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence 467778888887 88888888888888876
No 326
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.06 E-value=4.7 Score=38.12 Aligned_cols=53 Identities=13% Similarity=0.020 Sum_probs=46.7
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 184 e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
...++++.++..+++.++.+|-+-.+|..+-.+|+ +.|+...|+..|++.-..
T Consensus 164 ~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~-~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 164 IACGRADAVIEHLERLIELDPYDEPAYLRLMEAYL-VNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HcCCchHHHHHHHHHHHH
Confidence 34578899999999999999999999888887886 899999999999998774
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.61 E-value=6.7 Score=40.61 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
.+.+...|...|...|.--.+|-.+|..-+ +.+..+++.+.|+++|..-|.....|..|-.++....++.+.-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~-klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEY-KLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 367778888888888888888888888666 7888999999999999988888888887776666657888888888888
Q ss_pred HHHhCCCC
Q 023753 269 AVKSAPDD 276 (277)
Q Consensus 269 ALeldPdD 276 (277)
|+...-.+
T Consensus 140 A~~~vG~d 147 (577)
T KOG1258|consen 140 AKSYVGLD 147 (577)
T ss_pred HHHhcccc
Confidence 88765443
No 328
>PLN03138 Protein TOC75; Provisional
Probab=85.49 E-value=0.63 Score=49.70 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhCCCC
Q 023753 192 TDAYYEKMIEANPGN 206 (277)
Q Consensus 192 Ai~~yekALeldP~n 206 (277)
.++.+.++|.+.|..
T Consensus 166 ~e~~l~~~i~~kpG~ 180 (796)
T PLN03138 166 TEDSFFEMVTLRPGG 180 (796)
T ss_pred hHHHHHHHHhcCCCC
Confidence 344444455555443
No 329
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.37 E-value=4.4 Score=36.50 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQ 254 (277)
Q Consensus 189 ~deAi~~yekALeldP~--n----~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n-~~al~~LA~ll~~ 254 (277)
+.+|...|++|++.... . ..+++.+|.+.+ ..|++++|..+|.+++...-.. +..+..+|.=+|+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~r-rlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNR-RLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 34788888888876543 2 467888898776 8999999999999999864332 2456666665554
No 330
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=85.27 E-value=8.5 Score=38.63 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH----------------------------------
Q 023753 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC---------------------------------- 231 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~---------------------------------- 231 (277)
.|+.+.|+.|-++|-.+.|.-++++...-.... ..||++.|+++.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 377777777778887777777766554333333 355555555544
Q ss_pred -------HHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 232 -------GRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 232 -------ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
.+++++.|+...+-..-+..|+. .++..++-.+++.+.+..|.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~-d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFR-DGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHh-ccchhhhhhHHHHHHhcCCC
Confidence 44445555555554555555555 66666666666666665553
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.25 E-value=4.9 Score=31.29 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=34.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSL---YADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~---LA~ll~~~~Gd~deAi~~yekALel 272 (277)
..++.++|+..+++|++..++.+.-+.. +..++.+ .|+|.+++++--+=+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4667778888888888877766554443 4455666 67777777665555443
No 332
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=0.59 Score=45.60 Aligned_cols=90 Identities=16% Similarity=0.008 Sum_probs=71.3
Q ss_pred hCCCcHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANP---G----------------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL 245 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP---~----------------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al 245 (277)
..+++..|..-|.+++..-- . -.....+++.+.. ..+++..|+.....+++.++....++
T Consensus 234 kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~l-k~~~~~~a~~~~~~~~~~~~s~tka~ 312 (372)
T KOG0546|consen 234 KKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGL-KVKGRGGARFRTNEALRDERSKTKAH 312 (372)
T ss_pred hhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcc-cccCCCcceeccccccccChhhCcHH
Confidence 35677788888887765311 1 0123455666554 77889999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 246 ~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
+..+..+.. ..++++|++.++.|.+.+|+|
T Consensus 313 ~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 313 YRRGQAYKL-LKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred HHHHhHHHh-hhchhhhHHHHHHhhccCcch
Confidence 999999988 999999999999999999986
No 333
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=83.59 E-value=8.5 Score=35.11 Aligned_cols=48 Identities=21% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 225 AKAEELCGRAILA-----NPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 225 eeA~e~~ekALel-----dP~n~~a---l~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
++|.++|++|+.+ .|.+|.. ..+++.+|+...++.++|++..++|+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6788888888864 6777764 4567888888789999998888887753
No 334
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.31 E-value=9.8 Score=36.45 Aligned_cols=73 Identities=15% Similarity=0.085 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 195 ~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~--n~~al~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
.+++.+..||+|..+.+.+|..+. ..|++++|.+++-..++.|-. |..+...+-.++.. .|..+.+...|++=
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~-~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~-~g~~Dp~~~~~RRk 298 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLH-LVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA-FGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh-cCCCCHHHHHHHHH
Confidence 455666779999999999999997 899999999999999998763 56666666666655 66444455555543
No 335
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.15 E-value=4.8 Score=38.85 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAV 270 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekAL 270 (277)
+..+..|. ..+.+.+|+++.++++.++|-+...+..+-.+|.. .||--.|+..|++.-
T Consensus 283 gkva~~yl-e~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYL-EAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHH-HcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHHH
Confidence 33444454 68999999999999999999999998888888888 899888888887754
No 336
>PLN03138 Protein TOC75; Provisional
Probab=82.77 E-value=1 Score=48.20 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 023753 225 AKAEELCGRAILANPSDG 242 (277)
Q Consensus 225 eeA~e~~ekALeldP~n~ 242 (277)
...++.+.++|.+.|...
T Consensus 164 ~~~e~~l~~~i~~kpG~v 181 (796)
T PLN03138 164 VGTEDSFFEMVTLRPGGV 181 (796)
T ss_pred cchHHHHHHHHhcCCCCc
Confidence 346677788888887643
No 337
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=18 Score=36.07 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKE-----------VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK- 257 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e-----------~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G- 257 (277)
.++++.=.+.+..+|+...+|+---.++.+ ++.-.++-+.+.+.+++.+|+...+|+...+++.. ..
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~ 124 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH 124 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence 467888888899999988887644333321 11245667889999999999999999999999986 44
Q ss_pred -CHHHHHHHHHHHHHhCCCCC
Q 023753 258 -DASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 258 -d~deAi~~yekALeldPdD~ 277 (277)
++..=+++.+++++.+|.||
T Consensus 125 ~~~~~EL~lcek~L~~D~RNf 145 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNF 145 (421)
T ss_pred chHHHHHHHHHHHHhcCcccc
Confidence 36788999999999999885
No 338
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.69 E-value=8.3 Score=33.36 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
.+..++..++.++..| ++.++.+++.++. ..|+.++|.+..+++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcH
Confidence 4466777888888888 6888899999887 8999999999999999999943
No 339
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.10 E-value=18 Score=39.33 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=67.4
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--N-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----- 243 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~--n-------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~----- 243 (277)
.|......+.++++|..+..++...-+. . +.+....|.+.. ..+++++|+++.+.|+..-|.+..
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val-~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL-NRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 3444455568899999888888765444 1 122223334443 679999999999999999887543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
++..++.+..- .|++++|..+..++.++
T Consensus 499 ~~sv~~~a~~~-~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 499 ALSVLGEAAHI-RGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhHHHHH-hchHHHHHHHHHHHHHH
Confidence 46667777777 89999999999998876
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.89 E-value=20 Score=36.82 Aligned_cols=90 Identities=19% Similarity=0.042 Sum_probs=60.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN--A----LLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLY-- 248 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n--~----~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~----n~~al~~L-- 248 (277)
-+++...+++.|+.+++|++.+...+ . .+.+.++.++. +.+... |..+++++|+.--+ .....+.+
T Consensus 68 iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~-~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~ 145 (608)
T PF10345_consen 68 ILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF-KTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLK 145 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-hcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556789999999999998887443 2 23445567675 445444 99999999987654 22222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 249 ADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 249 A~ll~~~~Gd~deAi~~yekALeld 273 (277)
..++.. .+|+..|++.++......
T Consensus 146 ~~l~~~-~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 146 IQLALQ-HKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHh-cccHHHHHHHHHHHHHHh
Confidence 222333 369999999999988765
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.70 E-value=5.2 Score=37.23 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=51.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~ 243 (277)
..+.+.+|+...+.-++.+|.+......|-.+|. ..|++++|..-++-+-.+.|++..
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccch
Confidence 4578899999999999999999988887888887 789999999999999999998754
No 342
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.67 E-value=5.6 Score=41.97 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=50.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 214 ARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 214 A~lL~e~~Gd~eeA~e~~ekALeldP~n------~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.-++ ...+|..|++.|...+..-|.| +....+++.||+. ..+.|+|+++++.|-+.+|.+
T Consensus 361 A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 361 AKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcccc
Confidence 33354 5789999999999999987754 3456778999999 999999999999999999875
No 343
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=79.53 E-value=6.4 Score=32.41 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=44.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc---CC-------HHHHHHHHHHHHHhCCC
Q 023753 214 ARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAH---KD-------ASRAESYFDQAVKSAPD 275 (277)
Q Consensus 214 A~lL~e~~Gd~eeA~e~~ekALeldP~n~---~al~~LA~ll~~~~---Gd-------~deAi~~yekALeldPd 275 (277)
|.-++ ..||+-+|++..+.++...+++. ..+..-|.+++... .+ ...|+++|.+++.+.|+
T Consensus 3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 44555 68999999999999999998876 45555677665522 22 23688888888888775
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.45 E-value=7.9 Score=36.08 Aligned_cols=32 Identities=6% Similarity=-0.152 Sum_probs=21.9
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL 208 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n~~ 208 (277)
.+|-+++-..|++++|...++-+-++.|++..
T Consensus 39 hflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 39 HFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 45556666677777777777777777776643
No 345
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=78.79 E-value=3 Score=38.35 Aligned_cols=96 Identities=10% Similarity=-0.004 Sum_probs=52.6
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhC---CCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEAN---PGNA---------LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPS 240 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeld---P~n~---------~al~nLA~lL~e~~Gd~eeA~e~~ekALel-----dP~ 240 (277)
+.--+....|+++.|+...+.||+.+ |++. +-....+.... ..|+..+ ..+++....+ -|+
T Consensus 88 ~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~-~ag~~~e-~~~~~~~~~l~~~~dmpd 165 (230)
T PHA02537 88 TVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAA-SAGESVE-PYFLRVFLDLTTEWDMPD 165 (230)
T ss_pred EeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHH-HcCCCCC-hHHHHHHHHHHhcCCCCh
Confidence 33344455699999999999999986 4331 11222222222 2232110 1112222222 133
Q ss_pred CHHH--HHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCC
Q 023753 241 DGNI--LSLYADLIWQ--------AHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 241 n~~a--l~~LA~ll~~--------~~Gd~deAi~~yekALeldPd 275 (277)
...+ |-..|..++. ..++...|+.+|++|++++|+
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 3333 3444555531 145778999999999999986
No 346
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.15 E-value=18 Score=34.25 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 212 NYARFLKEVRGDFAKAEELCGRAILANPSDGN------ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 212 nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~------al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.-+..+ ...++|++|..++.+|++-.-+|.. ++-..+.++-+ ...+.+++.+|++|..+
T Consensus 36 kAAvaf-RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake-~~klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 36 KAAVAF-RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKE-LSKLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHH-HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 333444 4788999999999999965444422 23334444545 77888999999998765
No 347
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=77.51 E-value=2 Score=46.78 Aligned_cols=6 Identities=67% Similarity=1.016 Sum_probs=2.7
Q ss_pred hhcccc
Q 023753 41 RTRSVS 46 (277)
Q Consensus 41 ~~~~~~ 46 (277)
|||-||
T Consensus 1047 RTRAIS 1052 (1282)
T KOG0921|consen 1047 RTRAIS 1052 (1282)
T ss_pred hhheec
Confidence 444444
No 348
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.47 E-value=12 Score=38.38 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=57.1
Q ss_pred CCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 186 ~Gd~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
....+.|.+.|-++-+.- ..+..+...+-.++ ..+|+.-|-..|+--+..-|+++.+.+-+-.+++. .+|-..|.
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~--~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~-inde~nar 486 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY--ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR-INDEENAR 486 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH--hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCcHHHHH
Confidence 345667777777765543 12233333333322 57888888888888888888888777777666776 78888888
Q ss_pred HHHHHHHHh
Q 023753 264 SYFDQAVKS 272 (277)
Q Consensus 264 ~~yekALel 272 (277)
.+|++++..
T Consensus 487 aLFetsv~r 495 (660)
T COG5107 487 ALFETSVER 495 (660)
T ss_pred HHHHHhHHH
Confidence 888877753
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.15 E-value=6.9 Score=37.80 Aligned_cols=53 Identities=11% Similarity=-0.044 Sum_probs=45.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL 235 (277)
+|...+.+.+|+.+.++++++||-+...+..+-.+|. ..||--.|..+|++--
T Consensus 288 ~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la-~~gD~is~~khyerya 340 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLA-TLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHH-HhccchhhhhHHHHHH
Confidence 3445689999999999999999999999998888886 7899888888887643
No 350
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.59 E-value=9.1 Score=35.31 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=41.2
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 023753 220 VRGDFAKAEELCGRAILAN-PSDGNI-------LSLYADLIWQAHK-DASRAESYFDQAVKS 272 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeld-P~n~~a-------l~~LA~ll~~~~G-d~deAi~~yekALel 272 (277)
.+||++.|+.++.|+-... ..+|.. ++++|.-++. .+ ++++|..++++|+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHH
Confidence 5799999999999988766 444443 5555666666 78 999999999999987
No 351
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=75.57 E-value=21 Score=32.56 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------HcCCHHHHHHHHHHHHHhCCCCHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------VRGDFAKAEELCGRAILANPSDGN 243 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e-----------------------~~Gd~eeA~e~~ekALeldP~n~~ 243 (277)
.+..+|+.++++|-.++- ..+-++|...+.. ..+|.++|.++.-+|.+++ ++.
T Consensus 126 pd~~Ka~~y~traCdl~~--~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~ 201 (248)
T KOG4014|consen 126 PDSEKAERYMTRACDLED--GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQ 201 (248)
T ss_pred CCcHHHHHHHHHhccCCC--chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChH
Confidence 457799999999987754 4444445443320 1147899999999998874 677
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHh
Q 023753 244 ILSLYADLIWQA---HKDASRAESYFDQAVKS 272 (277)
Q Consensus 244 al~~LA~ll~~~---~Gd~deAi~~yekALel 272 (277)
+..++...|-.- -++.++|+.|-++|.++
T Consensus 202 aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 202 ACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 777888776430 13678999999999876
No 352
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=75.38 E-value=17 Score=33.21 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--------DFAKAEELCGRAILANPSDGNILSLYADLIWQA--- 255 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~G--------d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~--- 255 (277)
++...|+.+|+.|-. -+.+.+-.+++.+++ .| +.++|++|+.+|..++ +..+.++|...++.-
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~--~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k 160 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHW--NGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEK 160 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhc--cCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchh
Confidence 577899999998876 556778788887665 22 4789999999997764 556666666555440
Q ss_pred --------------------cCCHHHHHHHHHHHHHhC
Q 023753 256 --------------------HKDASRAESYFDQAVKSA 273 (277)
Q Consensus 256 --------------------~Gd~deAi~~yekALeld 273 (277)
..|.+.|.++--+|.+++
T Consensus 161 ~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 161 FKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred hcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 145667777776666553
No 353
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.97 E-value=11 Score=38.45 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=46.5
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA 234 (277)
+.+...|+|.++..+-.-..+++| .+.++..+|.+++ ..++|.+|-.++...
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~-e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLM-ENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHH-HHhhHHHHHHHHHhC
Confidence 455678999999999999999999 8999999999997 689999999999875
No 354
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.89 E-value=22 Score=36.66 Aligned_cols=69 Identities=16% Similarity=0.025 Sum_probs=54.1
Q ss_pred CCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 023753 203 NPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILA---NPS----DGNILSLYADLIWQAHKD-ASRAESYFDQAVKSA 273 (277)
Q Consensus 203 dP~n~~-al~nLA~lL~e~~Gd~eeA~e~~ekALel---dP~----n~~al~~LA~ll~~~~Gd-~deAi~~yekALeld 273 (277)
|+++.- .++.+|.++. ..|+...|..+|..+++. ..+ .|.+++.+|.++|. ++. ..+|.+++.+|-+..
T Consensus 444 d~Dd~~lk~lL~g~~lR-~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILR-NLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-LGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-cccChHHHHHHHHHHHhhc
Confidence 444443 3556677786 889999999999999843 222 47889999999999 777 999999999997765
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.49 E-value=16 Score=28.44 Aligned_cols=52 Identities=6% Similarity=-0.002 Sum_probs=40.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHh
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYAR---FLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~---lL~e~~Gd~eeA~e~~ekALel 237 (277)
..++.++|+..+++|++..++.+..+..+|. ++. ..|+|.+++++..+-+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~-e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHM-EWGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999988766555554 454 678999988887776665
No 356
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=73.09 E-value=5.8 Score=24.23 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHH
Q 023753 258 DASRAESYFDQAVK 271 (277)
Q Consensus 258 d~deAi~~yekALe 271 (277)
|.++|..+|++|.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 44555555555543
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.54 E-value=27 Score=35.01 Aligned_cols=85 Identities=15% Similarity=0.037 Sum_probs=47.7
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHH----------------HHHHHHhC--CCCHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEEL----------------CGRAILAN--PSDGN 243 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~----------------~ekALeld--P~n~~ 243 (277)
.-.+++++++....+. -++-|.-+ .-....+.+|. ++|-.+.|++. ++.|+++. .+++.
T Consensus 271 av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~-~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~ 348 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLE-KKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE 348 (443)
T ss_dssp HHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHH-HTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred HHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHH-HCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence 3344677765544431 12223222 22444555553 66766665542 33333333 35788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAV 270 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekAL 270 (277)
.|..||...+. +|+++-|+++|+++-
T Consensus 349 ~W~~Lg~~AL~-~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 349 KWKQLGDEALR-QGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHH-TTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHhhc
Confidence 99999999999 999999999999863
No 358
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.33 E-value=18 Score=36.43 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAILA--NP--SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekALel--dP--~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+.+-..|. ..+.|+.|.....++.-- +. ..+.+++++|.+..- +.+|..|.++|-+|+...|++
T Consensus 212 iN~LLr~yL-~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-qldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 212 INLLLRNYL-HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-QLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHh-hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-hcchhHHHHHHHHHHHhCcch
Confidence 333334443 567889998888877621 12 345567788988887 999999999999999999964
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.85 E-value=22 Score=30.91 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=48.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
...+.++++..+...--+.|+.+.+-..-++++.. .+++.+|+..|+...+-.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCC
Confidence 46899999999999999999999999999999999 9999999999998876544
No 360
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.73 E-value=15 Score=36.19 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~al~~LA~ll~~~~Gd~deAi~ 264 (277)
-++..-..+|+-...+.|. |.+-.|.+..+.+ ..-.+.++...+.+.... ..+..++..-|.++.+ .|+.++|..
T Consensus 310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~-~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~ 386 (415)
T COG4941 310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAM-REGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARA 386 (415)
T ss_pred CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHH-hhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHH
Confidence 3555666667766666664 5555566766653 333566666666555431 2344456667888888 999999999
Q ss_pred HHHHHHHhCCC
Q 023753 265 YFDQAVKSAPD 275 (277)
Q Consensus 265 ~yekALeldPd 275 (277)
.|++|+.+.++
T Consensus 387 aydrAi~La~~ 397 (415)
T COG4941 387 AYDRAIALARN 397 (415)
T ss_pred HHHHHHHhcCC
Confidence 99999999876
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.71 E-value=7.2 Score=26.75 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 246 SLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 246 ~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
+.+|.+|+. .||++.|...++..+.
T Consensus 3 LdLA~ayie-~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIE-MGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHH-cCChHHHHHHHHHHHH
Confidence 467778887 8888888888887774
No 362
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.62 E-value=8.2 Score=29.53 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=16.1
Q ss_pred HcCCHHHHHHHHHHHHHh
Q 023753 220 VRGDFAKAEELCGRAILA 237 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALel 237 (277)
..|+|++|+.+|..||+.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 678999999999999985
No 363
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=71.54 E-value=8.2 Score=29.50 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 212 NYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 212 nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
..|.-+ ...|+|++|+.+|..||+.
T Consensus 11 ~~Ave~-D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 11 RLAVQR-DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHH-HHccCHHHHHHHHHHHHHH
Confidence 334334 4789999999999999875
No 364
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.52 E-value=40 Score=32.92 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=55.7
Q ss_pred hCCCcHHHHHHHHHHHHh-CCCCH-HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCC--------------------
Q 023753 185 NNHGSSSTDAYYEKMIEA-NPGNA-LLLGNYARF--LKEVRGDFAKAEELCGRAILANPS-------------------- 240 (277)
Q Consensus 185 ~~Gd~deAi~~yekALel-dP~n~-~al~nLA~l--L~e~~Gd~eeA~e~~ekALeldP~-------------------- 240 (277)
..++|..|...|..+++. .+... ..+..++.. ++ ..-++.+|.+++++.+...-.
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W-D~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 221 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW-DRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALES 221 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHh
Confidence 468999999999999986 44332 244444333 34 456899999999976653100
Q ss_pred ---------C---HHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHh
Q 023753 241 ---------D---GNILSLYADLIWQ-----AHKDASRAESYFDQAVKS 272 (277)
Q Consensus 241 ---------n---~~al~~LA~ll~~-----~~Gd~deAi~~yekALel 272 (277)
. ...+..++.++.+ .+|+|+.|+..+-+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 222 ILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred hccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 0023334444433 157899999999999876
No 365
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=70.21 E-value=6.9 Score=40.55 Aligned_cols=56 Identities=16% Similarity=-0.011 Sum_probs=49.4
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~ 243 (277)
++.-.|+.-+..|+++||-...+|+.|+.++. ..+++.+|+++...+....|.+..
T Consensus 425 ~d~~~AlrDch~Alrln~s~~kah~~la~aL~-el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 425 GDSYLALRDCHVALRLNPSIQKAHFRLARALN-ELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred ccHHHHHHhHHhhccCChHHHHHHHHHHHHHH-HHhhHHHhhhhHHHHhhcCchhhh
Confidence 45557888889999999999999999999997 789999999999999999996654
No 366
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.65 E-value=32 Score=31.24 Aligned_cols=79 Identities=18% Similarity=-0.028 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHc
Q 023753 189 SSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAH 256 (277)
Q Consensus 189 ~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~------n~~al~~LA~ll~~~~ 256 (277)
....+.++.+|++.-... ..+...+|..|+ ..|++++|+.+|+.+...-.. ...++..+..|+.. .
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~-~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~-~ 231 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYF-RLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR-L 231 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-h
Confidence 345677777777654322 345668888887 799999999999999765432 24456667777887 8
Q ss_pred CCHHHHHHHHHHH
Q 023753 257 KDASRAESYFDQA 269 (277)
Q Consensus 257 Gd~deAi~~yekA 269 (277)
++.+..+.+.-+.
T Consensus 232 ~~~~~~l~~~leL 244 (247)
T PF11817_consen 232 GDVEDYLTTSLEL 244 (247)
T ss_pred CCHHHHHHHHHHH
Confidence 8888776655444
No 367
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.59 E-value=17 Score=30.85 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 196 yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
-++.+++-- -.......+.-.. ..|++.-|.+.+..++..+|+|..+....+.+|.+ ++.
T Consensus 60 A~~~v~l~G-G~d~vl~~A~~~~-~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~-lg~ 119 (141)
T PF14863_consen 60 AKRYVELAG-GADKVLERAQAAL-AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ-LGY 119 (141)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HHH
Confidence 344444443 3445555666555 68999999999999999999999999999998877 543
No 368
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=69.36 E-value=8.8 Score=25.52 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 208 LLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (277)
Q Consensus 208 ~al~nLA~lL~e~~Gd~eeA~e~~ekALeld 238 (277)
.++..+|.+-. ...+|++|+.-|++++++.
T Consensus 2 dv~~~Lgeisl-e~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISL-ENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Confidence 45677888776 6789999999999999863
No 369
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=69.06 E-value=51 Score=33.93 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=66.4
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n--~~al~~LA~ll~~~~Gd~deA 262 (277)
..+++..|-..|+-.+...|+++...+.|-.+|. ..+|-..|...|+++++.-..+ ...|.-+-..-.. -|+...|
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi-~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~-~G~lN~v 521 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI-RINDEENARALFETSVERLEKTQLKRIYDKMIEYESM-VGSLNNV 521 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh-hcchHHH
Confidence 4689999999999999999999999888888775 7899999999999888754433 2333333333333 5777777
Q ss_pred HHHHHHHHHhCCC
Q 023753 263 ESYFDQAVKSAPD 275 (277)
Q Consensus 263 i~~yekALeldPd 275 (277)
..+=++..++.|.
T Consensus 522 ~sLe~rf~e~~pQ 534 (660)
T COG5107 522 YSLEERFRELVPQ 534 (660)
T ss_pred HhHHHHHHHHcCc
Confidence 7766666666554
No 370
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=69.04 E-value=43 Score=29.04 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=47.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
++...-+.+|-+. +-.+- ++.+|.-+.-.+++-++-.+.+....+.+..+|.++.-+|.+|-. .|+..+|.+++
T Consensus 70 ~NlKrVi~C~~~~---n~~se--~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAKR---NKLSE--YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHHT---T---H--HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cchHHHHHHHHHh---cchHH--HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHH
Confidence 4555566665443 33333 334443222257777777777877777667789999999999988 99999999999
Q ss_pred HHHHHh
Q 023753 267 DQAVKS 272 (277)
Q Consensus 267 ekALel 272 (277)
.+|-+.
T Consensus 144 ~~ACek 149 (161)
T PF09205_consen 144 KEACEK 149 (161)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 371
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=68.98 E-value=10 Score=26.06 Aligned_cols=32 Identities=44% Similarity=0.537 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 023753 230 LCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (277)
Q Consensus 230 ~~ekALeldP~n~~al~~LA~ll~~~~Gd~deA 262 (277)
.|.+||..+|++...+..||..+.. .|+.++|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e-~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDE-HGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHH-cCCHHHH
Confidence 4555555566655555556655555 5555443
No 372
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=68.81 E-value=6.7 Score=38.47 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
..|+.....+++.++....+++..+..+. ...++++|++.++.|...+|++......+..+-..
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~-~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYK-LLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHH-hhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 34444444455588888888888888886 78899999999999999999999887766655444
No 373
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=68.64 E-value=12 Score=23.27 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 023753 259 ASRAESYFDQAVK 271 (277)
Q Consensus 259 ~deAi~~yekALe 271 (277)
+++|+.+|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 3455555555443
No 374
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=68.00 E-value=47 Score=26.72 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=36.8
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG 232 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~e 232 (277)
+...+.....+.+++.++..++.++..+..|..+|. .-+..+.+++++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~--~~~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYA--KYDPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHH--HHCHHHHHHHHH
Confidence 344567889999999999999888888888887775 335566666666
No 375
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.91 E-value=7.7 Score=41.74 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=59.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHH---HHHHHHH---HHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----SDGNI---LSLYADL---IWQA 255 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP-----~n~~a---l~~LA~l---l~~~ 255 (277)
+..+.|+.+|++|.+..|.-.. -.|+|.+|.....+|+..++.-.-+++++. .+..- |-..|.+ -..
T Consensus 301 ~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL- 378 (1226)
T KOG4279|consen 301 ESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL- 378 (1226)
T ss_pred hhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh-
Confidence 4567899999999999997543 346777666444567777776666666643 11111 1111211 112
Q ss_pred cCCHHHHHHHHHHHHHhCCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD~ 277 (277)
.+||.+|+..-++.++++|-.|
T Consensus 379 And~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCcee
Confidence 4799999999999999999876
No 376
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=67.88 E-value=18 Score=36.64 Aligned_cols=83 Identities=16% Similarity=-0.009 Sum_probs=60.3
Q ss_pred CCCcHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 023753 186 NHGSSSTDAYYEKMIEA--------NPGNA----------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (277)
Q Consensus 186 ~Gd~deAi~~yekALel--------dP~n~----------~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~ 247 (277)
++.|..|..-|+.||++ .|..+ .+--.+..+|. ..++.+.|+.+..+.|.+||.++.-+..
T Consensus 189 qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL-~~rkpdlALnh~hrsI~lnP~~frnHLr 267 (569)
T PF15015_consen 189 QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYL-RMRKPDLALNHSHRSINLNPSYFRNHLR 267 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhh-hcCCCchHHHHHhhhhhcCcchhhHHHH
Confidence 35666666666666665 22221 22334555564 7899999999999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 023753 248 YADLIWQAHKDASRAESYFDQAV 270 (277)
Q Consensus 248 LA~ll~~~~Gd~deAi~~yekAL 270 (277)
-|.|... +.+|.+|..-+--|.
T Consensus 268 qAavfR~-LeRy~eAarSamia~ 289 (569)
T PF15015_consen 268 QAAVFRR-LERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH
Confidence 8888877 888988876655443
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.71 E-value=52 Score=30.33 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHhCCCCHHHHHHHHH
Q 023753 193 DAYYEKMIEAN------PGNALLLGNYARFLKEVRGDFAKAEELCGRA----------------ILANPSDGNILSLYAD 250 (277)
Q Consensus 193 i~~yekALeld------P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekA----------------LeldP~n~~al~~LA~ 250 (277)
....++||+-. -.++..+..+|..|+ ..+++.+|+.||-.. .+-.|...+.+..-|.
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~-~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaV 148 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLW-KEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAV 148 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHH-HTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 34445555443 246889999999998 788999988877321 1335666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 023753 251 LIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 251 ll~~~~Gd~deAi~~yekALel 272 (277)
+.+...++...|...++..++.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555578888888877766655
No 378
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=67.51 E-value=22 Score=37.06 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~ye 267 (277)
.++.|.+..+.-+--....+..++.-|.++. ..+..++|-++|++.+..+|+ ..++.+|.-+.+ .|-..+|...++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~ 98 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLH-DVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH
Confidence 3444444444444333444455555566554 456667777777777777666 334455555555 555555555444
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.26 E-value=73 Score=26.15 Aligned_cols=80 Identities=8% Similarity=-0.015 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALL----LGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~a----l~nLA~lL~e~~Gd~eeA~e~~ekALeld--P~n~~al~~LA~ll~~~~Gd~de 261 (277)
....-...+++++..-.++... .+..-++.+ ..-...+.+.|..+.... -..+..|..+|.++.. .+++++
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y--a~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~~ 117 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY--ADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFKK 117 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH--HTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HHH
T ss_pred chhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH--HHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHHH
Confidence 4455567888888765544211 111111111 222337888888777644 5788889999999988 999999
Q ss_pred HHHHHHHHH
Q 023753 262 AESYFDQAV 270 (277)
Q Consensus 262 Ai~~yekAL 270 (277)
|.+.|+++|
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999986
No 380
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.19 E-value=16 Score=27.93 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 023753 224 FAKAEELCGRAILANPSDGNIL 245 (277)
Q Consensus 224 ~eeA~e~~ekALeldP~n~~al 245 (277)
|.+|++.+.+++...|+++...
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHH
Confidence 5556666666666788887643
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.77 E-value=27 Score=31.71 Aligned_cols=52 Identities=10% Similarity=-0.030 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 223 DFAKAEELCGRAILAN-PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 223 d~eeA~e~~ekALeld-P~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.-++|...|.++-... =++++..+.+|.+|.. .|.++|+.+|-+++++.+.+
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~ 173 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTK--RDPEKTIQLLLRALELSNPD 173 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCC
Confidence 3467777776654432 2688999999987765 89999999999999987654
No 382
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=65.71 E-value=25 Score=32.61 Aligned_cols=48 Identities=13% Similarity=0.011 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 224 FAKAEELCGRAILA-----NPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 224 ~eeA~e~~ekALel-----dP~n~~a---l~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
.++|.++|++|+++ .|.+|.. ..+++.+|+..+++.++|+...++|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46899999999874 4778775 456788888878999999877776664
No 383
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=65.64 E-value=41 Score=40.29 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHH-h--CCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 189 SSSTDAYYEKMIE-A--NPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 189 ~deAi~~yekALe-l--dP~----n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
..+-+-.+++++- + +|+ -...|.++|++.. ..|+++.|..++-.|.+.. -+.++...|..+|. .||-..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR-~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~ 1720 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIAR-LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELN 1720 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHH-hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHH
Confidence 4455666666643 2 332 3578999999886 8999999999999999887 56778889999999 999999
Q ss_pred HHHHHHHHHHhC
Q 023753 262 AESYFDQAVKSA 273 (277)
Q Consensus 262 Ai~~yekALeld 273 (277)
|+.++++.+.++
T Consensus 1721 Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1721 ALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHhh
Confidence 999999999654
No 384
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=65.35 E-value=20 Score=37.36 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 205 GNALLLGNYARFLKE-VRGDFAKAEELCGRAILAN-----PSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 205 ~n~~al~nLA~lL~e-~~Gd~eeA~e~~ekALeld-----P~n~~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
.+|.++.+||.+--. ...+-..+++.|.+||... ....+-|.++|..|++ .++|.+|+.++-.|-.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHH
Confidence 468889999986421 2234577899999999763 2344557778888888 9999999999988754
No 385
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=64.48 E-value=15 Score=41.36 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=71.8
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHh-------C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEA-------N-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSD 241 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALel-------d-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n 241 (277)
+...++...+++++|+.+-++|.-+ | |+....+.+++.+.+ ..++...|...+.+|.++ .|.-
T Consensus 978 ~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f-~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 978 SLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEF-AVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHH-hccCccchhhhHHHHHHhhccccCCCCCch
Confidence 4445666779999999888777544 3 455677888887666 677888999999998876 3444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (277)
Q Consensus 242 ~~al~~LA~ll~~~~Gd~deAi~~yekALeld 273 (277)
+....++..++.. .++++.|+.+++.|++++
T Consensus 1057 a~~~~nle~l~~~-v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1057 ALSFINLELLLLG-VEEADTALRYLESALAKN 1087 (1236)
T ss_pred hhhhhHHHHHHhh-HHHHHHHHHHHHHHHHHH
Confidence 5556778888777 899999999999999854
No 386
>COG4278 Uncharacterized conserved protein [Function unknown]
Probab=64.14 E-value=5 Score=37.30 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 023753 153 NGGKICDG 160 (277)
Q Consensus 153 ~~g~~~gg 160 (277)
+|||+|||
T Consensus 253 ~CgggcGg 260 (269)
T COG4278 253 FCGGGCGG 260 (269)
T ss_pred ccCCCCCC
Confidence 34444444
No 387
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=64.00 E-value=61 Score=24.50 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
.+|+..+++|++.|-. .+|...+ .-|..|+++|..+++..++ +..... +..+..+-.++|.+.+..-
T Consensus 4 ~~A~~l~~~Ave~d~~-----~~y~eA~----~~Y~~~i~~~~~~~k~e~~-~~~k~~---ir~K~~eYl~RAE~i~~~~ 70 (75)
T cd02677 4 EQAAELIRLALEKEEE-----GDYEAAF----EFYRAGVDLLLKGVQGDSS-PERREA---VKRKIAEYLKRAEEILRLH 70 (75)
T ss_pred HHHHHHHHHHHHHHHH-----hhHHHHH----HHHHHHHHHHHHHhccCCC-HHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 5777888888776543 2222222 2356666666666666644 222111 1111123345666666655
Q ss_pred HH
Q 023753 270 VK 271 (277)
Q Consensus 270 Le 271 (277)
+.
T Consensus 71 l~ 72 (75)
T cd02677 71 LS 72 (75)
T ss_pred cc
Confidence 44
No 388
>PF12854 PPR_1: PPR repeat
Probab=63.50 E-value=17 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 242 GNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 242 ~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
...|..+-..|.+ .|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck-~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCK-AGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHH-CCCHHHHHHHHHh
Confidence 3445555556666 6666666666654
No 389
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.73 E-value=43 Score=32.00 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 223 DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 223 d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
..-+|+..++.++..+|.|+.....+..+|.. .|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHh
Confidence 56789999999999999999999999999998 9999999999865
No 390
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.95 E-value=42 Score=34.80 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLK---EVRGD------FAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~---e~~Gd------~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
|++++|+..+-..-.+.|+-......|-.+.. +..+| --+-+.|.++.+-.+..|+.++.+.+.-... ..
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 790 (831)
T PRK15180 712 GRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMH-LR 790 (831)
T ss_pred ccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhH-HH
Confidence 67788888877777888988777666655443 11111 1234667788888899999998877776667 88
Q ss_pred CHHHHHHHHHHHHHhC
Q 023753 258 DASRAESYFDQAVKSA 273 (277)
Q Consensus 258 d~deAi~~yekALeld 273 (277)
||.+|++|+++.-+.+
T Consensus 791 ~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 791 DYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999986654
No 391
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=61.73 E-value=68 Score=34.89 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL--KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA--- 255 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL--~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~--- 255 (277)
.++...+++++-...-+++.++.|.++..|.++..-. .....+-.+++..|++|+. |-+++..|..++.++...
T Consensus 121 ~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~ 199 (881)
T KOG0128|consen 121 GLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNV 199 (881)
T ss_pred HHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhcccc
Confidence 3444455666655555666666666666666554321 1122345556666666655 223333343333333221
Q ss_pred ---cCCHHHHHHHHHHHHH
Q 023753 256 ---HKDASRAESYFDQAVK 271 (277)
Q Consensus 256 ---~Gd~deAi~~yekALe 271 (277)
.++++.-...|.+|+.
T Consensus 200 ~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 200 AKKSEDYKKERSVFERALR 218 (881)
T ss_pred ccccccchhhhHHHHHHHh
Confidence 2344555555555553
No 392
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.95 E-value=1.3e+02 Score=29.92 Aligned_cols=50 Identities=12% Similarity=-0.046 Sum_probs=34.8
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 023753 182 YSNNNHGSSSTDAYYEKMIEANPGN-----ALLLGNYARFL--KEVRGDFAKAEELCG 232 (277)
Q Consensus 182 m~e~~Gd~deAi~~yekALeldP~n-----~~al~nLA~lL--~e~~Gd~eeA~e~~e 232 (277)
.+....+|..|...|+.+++..+.. ...+..+...| + ..-++++|.++++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~W-D~fd~~~A~~~L~ 195 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHW-DRFEHEEALDYLN 195 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHH-HccCHHHHHHHHh
Confidence 3445689999999999999986532 23344444433 4 3458899999998
No 393
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.92 E-value=80 Score=38.02 Aligned_cols=93 Identities=12% Similarity=0.050 Sum_probs=68.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----------------- 241 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n----------------- 241 (277)
+.++...+|.++.|-.+.-+|.+.. -+.++...|..++ .+|+-..|+.++++.+..+-.+
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 3356666799999999999999988 4677888999999 8999999999999999765222
Q ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC
Q 023753 242 GNILSLYADLIWQAHKDA--SRAESYFDQAVKSAPD 275 (277)
Q Consensus 242 ~~al~~LA~ll~~~~Gd~--deAi~~yekALeldPd 275 (277)
..+...++...-. .+++ ++-+.+|..|+++.|.
T Consensus 1753 ~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEE-SGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHccc
Confidence 1123333333333 4444 3567899999999884
No 394
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.33 E-value=28 Score=35.88 Aligned_cols=80 Identities=23% Similarity=0.163 Sum_probs=61.3
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI----LSLYADLIWQAHKDASRAES 264 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~a----l~~LA~ll~~~~Gd~deAi~ 264 (277)
.....+.+.....+.|+++....+.|..+. ..|+.+.|+..++..+. +.--++ ++..|+++.. +.+|.+|..
T Consensus 249 ~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~-~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad 324 (546)
T KOG3783|consen 249 GEECEKALKKYRKRYPKGALWLLMEARILS-IKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVG-QHQYSRAAD 324 (546)
T ss_pred HHHHHHHhHHHHHhCCCCccHHHHHHHHHH-HcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 356667777777889999999999999887 67779999999999988 433332 4456777777 788999988
Q ss_pred HHHHHHHh
Q 023753 265 YFDQAVKS 272 (277)
Q Consensus 265 ~yekALel 272 (277)
++......
T Consensus 325 ~~~~L~de 332 (546)
T KOG3783|consen 325 SFDLLRDE 332 (546)
T ss_pred HHHHHHhh
Confidence 88877654
No 395
>PF13041 PPR_2: PPR repeat family
Probab=59.74 E-value=24 Score=23.53 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 244 ILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 244 al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
.|..+-..+.+ .+++++|.++|++..+
T Consensus 5 ~yn~li~~~~~-~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCK-AGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34444444555 5666666666665554
No 396
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=58.38 E-value=84 Score=34.22 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAES 264 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~--~~Gd~deAi~ 264 (277)
+..+.-+.-++.-+.+++.+...+..|-.+++ ..+++++-...-+++.++.|.++..|..+..-... ..++-.++..
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llr-k~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~ 171 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLR-KLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEE 171 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHH-HhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHH
Confidence 34456677778888889988888888888887 89999999999999999999999998877544333 1356678888
Q ss_pred HHHHHHH
Q 023753 265 YFDQAVK 271 (277)
Q Consensus 265 ~yekALe 271 (277)
.|++|+-
T Consensus 172 ~~ekal~ 178 (881)
T KOG0128|consen 172 LFEKALG 178 (881)
T ss_pred HHHHHhc
Confidence 8998874
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.30 E-value=71 Score=31.17 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCH-HHHHH--HHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 212 NYARFLKEVRGDFAKAEELCGRAILA-NPSDG-NILSL--YADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 212 nLA~lL~e~~Gd~eeA~e~~ekALel-dP~n~-~al~~--LA~ll~~~~Gd~deAi~~yekALel 272 (277)
..+.-++ ..++|..|.+.|+.++.. .++.. ..+.. .|..+|+ .-++++|.+++++.+..
T Consensus 136 ~~a~~l~-n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELF-NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHH
Confidence 3444455 689999999999999986 44332 23333 4566788 88999999999988754
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.14 E-value=62 Score=26.56 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 188 GSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (277)
Q Consensus 188 d~deAi~~yekALeld--P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL 235 (277)
....+...|+.+.... -..+..|..+|.++. ..+++++|.+.|+++|
T Consensus 78 ~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le-~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLE-KRGNFKKADEIYQLGI 126 (126)
T ss_dssp TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhhC
Confidence 4448888888887754 556888999999885 8999999999999886
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.61 E-value=21 Score=24.42 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
+++|..|. ..||++.|.+.+++++.
T Consensus 3 LdLA~ayi-e~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYI-EMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 57888887 79999999999999995
No 400
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=57.20 E-value=19 Score=23.37 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYAR 215 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~ 215 (277)
++.|...|++.+...|+ +..|..||.
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 45666666666666653 555555554
No 401
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=56.93 E-value=56 Score=30.94 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=57.8
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARF---LKEVRGDF---AKAEELCGRAILANPSDGNILSLYADLIWQ 254 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~--n~~al~nLA~l---L~e~~Gd~---eeA~e~~ekALeldP~n~~al~~LA~ll~~ 254 (277)
+...++|++=.+.|.++.+...+ .....+-++.. ++...... ..-.+.++.=++..|+...++..+|.++..
T Consensus 10 LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 10 LLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 33457888888888888765433 11111111111 11000011 135566666777899999998888877655
Q ss_pred Hc---------------------CCHHHHHHHHHHHHHhCCCCC
Q 023753 255 AH---------------------KDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 255 ~~---------------------Gd~deAi~~yekALeldPdD~ 277 (277)
.. .-.+.|..++.+|++++|..+
T Consensus 90 ~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 90 RAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred HHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 21 135689999999999999753
No 402
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=56.59 E-value=42 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=38.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 220 VRGDFAKAEELCGRAILANPS------------DGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~------------n~~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
..+-|++|..-|++|+++... |+..+..|+.++.. +|+|++++..-++||.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALR 83 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 468899999999999987532 34456678888888 9999988877777764
No 403
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.43 E-value=31 Score=25.69 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.0
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 023753 219 EVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 219 e~~Gd~eeA~e~~ekALel 237 (277)
...|++++|+.+|.+|++.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 17 DNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5789999999999888764
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.22 E-value=20 Score=35.71 Aligned_cols=88 Identities=10% Similarity=-0.033 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 023753 186 NHGSSSTDAYYEKMIEAN---------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (277)
Q Consensus 186 ~Gd~deAi~~yekALeld---------P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~ 256 (277)
.|||..|++.++.. +++ +-+...++.+|-+|. ..++|.+|+..|...+..--.....+..-..-+-...
T Consensus 135 LGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFayl-MlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~ 212 (404)
T PF10255_consen 135 LGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYL-MLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQIN 212 (404)
T ss_pred ccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHH
Confidence 48888888876643 222 223345667776665 6788888888888876542222211111111111112
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 023753 257 KDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 257 Gd~deAi~~yekALeldPd 275 (277)
+..++...++--++.+.|.
T Consensus 213 K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 213 KKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hHHHHHHHHHHHHHHhCCC
Confidence 4455555566666666653
No 405
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=56.12 E-value=17 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=11.3
Q ss_pred HcCCHHHHHHHHHHHHH
Q 023753 220 VRGDFAKAEELCGRAIL 236 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALe 236 (277)
..++|++|..+|..+|+
T Consensus 18 ~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 18 EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55667777777766665
No 406
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=54.80 E-value=65 Score=30.48 Aligned_cols=63 Identities=11% Similarity=-0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 192 TDAYYEKMIEANPGNALLLGNYARFLKEVR---------------------GDFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 192 Ai~~yekALeldP~n~~al~nLA~lL~e~~---------------------Gd~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
-.+.++.=++..|+...++..+|.++.... .-.+.|..++.+|++++|+...++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 445555557889999988888887764211 14578999999999999999988777655
Q ss_pred HHHH
Q 023753 251 LIWQ 254 (277)
Q Consensus 251 ll~~ 254 (277)
+.-.
T Consensus 142 ~s~~ 145 (277)
T PF13226_consen 142 ISAY 145 (277)
T ss_pred HHhh
Confidence 4433
No 407
>PF13041 PPR_2: PPR repeat family
Probab=54.22 E-value=62 Score=21.45 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld 238 (277)
...|+.+-..+. +.+++++|.+.|++..+..
T Consensus 3 ~~~yn~li~~~~-~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYC-KAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHH-HCcCHHHHHHHHHHHHHcC
Confidence 445566666665 7888999999999888764
No 408
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.13 E-value=81 Score=33.15 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=59.2
Q ss_pred CCCcHHHHHHHHHHHHh-CCC-----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------
Q 023753 186 NHGSSSTDAYYEKMIEA-NPG-----------NALLLGNYARFLKEVRGDFAKAEELCGRAILA---------------- 237 (277)
Q Consensus 186 ~Gd~deAi~~yekALel-dP~-----------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel---------------- 237 (277)
...|++|...|.-|++. +|+ +...+..+|.+.. .+||.+-|....+++|-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r-~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFR-FQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 45677888888877765 333 3456778888776 788887777766666522
Q ss_pred -----CCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 238 -----NPSDGNILS---LYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 238 -----dP~n~~al~---~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
.|.|...|. .+-..+.+ .|....|.++.+-.+.++|.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~-RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQ-RGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCc
Confidence 333433322 22233444 68899999999999999997
No 409
>PF12854 PPR_1: PPR repeat
Probab=53.36 E-value=31 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 206 NALLLGNYARFLKEVRGDFAKAEELCGR 233 (277)
Q Consensus 206 n~~al~nLA~lL~e~~Gd~eeA~e~~ek 233 (277)
|...|..+-..|. +.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~C-k~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYC-KAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHH-HCCCHHHHHHHHHh
Confidence 4556667777777 79999999999875
No 410
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.35 E-value=27 Score=26.71 Aligned_cols=15 Identities=0% Similarity=0.049 Sum_probs=9.5
Q ss_pred cHHHHHHHHHHHHhC
Q 023753 189 SSSTDAYYEKMIEAN 203 (277)
Q Consensus 189 ~deAi~~yekALeld 203 (277)
+++|+.+.++|+..|
T Consensus 3 l~kai~Lv~~A~~eD 17 (75)
T cd02680 3 LERAHFLVTQAFDED 17 (75)
T ss_pred HHHHHHHHHHHHHhh
Confidence 456777777775544
No 411
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=53.16 E-value=28 Score=23.91 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE 228 (277)
Q Consensus 194 ~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~ 228 (277)
..|.+||..+|++...+.-||..|. ..|+.++|+
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~-e~gdp~rae 36 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLD-EHGDPARAE 36 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHH-HcCCHHHHh
Confidence 4678899999999999999999886 688886653
No 412
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=53.01 E-value=23 Score=20.53 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 247 LYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 247 ~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
.+-..|.+ .+++++|.+.|++..+
T Consensus 5 ~li~~~~~-~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCK-MGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHc-cchHHHHHHHHHHHhH
Confidence 33344444 5555555555555443
No 413
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=52.73 E-value=84 Score=34.66 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHH
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA----HKDASRAE 263 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~----~Gd~deAi 263 (277)
.+++|+..|++. .-.|..|.-|...|.+|. ..++|++-+++|.-|++..|+.|..-..--.+.+.. ..+...|.
T Consensus 534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQ-RLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHh-cCCCCCchHHHhHHHHHH-HhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666654 335777777888888886 899999999999999999999887644333333220 12345677
Q ss_pred HHHHHHHHhCCCC
Q 023753 264 SYFDQAVKSAPDD 276 (277)
Q Consensus 264 ~~yekALeldPdD 276 (277)
.+.--|+.+.|..
T Consensus 612 ~~~~~~~~~~~~~ 624 (932)
T PRK13184 612 VFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHhCccc
Confidence 7777777777753
No 414
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=52.33 E-value=73 Score=25.27 Aligned_cols=38 Identities=24% Similarity=0.186 Sum_probs=26.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd 258 (277)
..||+.+|++.+.++.+..+..+-.+..-|.+... +||
T Consensus 71 ~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~-~gd 108 (108)
T PF07219_consen 71 AEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQA-QGD 108 (108)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-cCC
Confidence 57999999999999977755555555545555544 554
No 415
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.99 E-value=35 Score=19.88 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 247 LYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 247 ~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
.+-..|.+ .+++++|.++|++..+
T Consensus 5 ~li~~~~~-~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 5 TLIDGLCK-AGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 33344555 6666666666666543
No 416
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.70 E-value=34 Score=35.43 Aligned_cols=48 Identities=6% Similarity=0.036 Sum_probs=38.1
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ek 233 (277)
..||+-.|-.....++...|.+|......+.+.. ..|+|+.|.+.+.-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~-~lg~ye~~~~~~s~ 348 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFS-HLGYYEQAYQDISD 348 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHH-HhhhHHHHHHHhhc
Confidence 3589999999999999999999987777776664 78888887766543
No 417
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.15 E-value=37 Score=25.28 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
+++|+.++++|++.|-.. ++...+. -|..|+++|.++++..|+.
T Consensus 3 ~~~A~~l~~~Av~~D~~g-----~y~eA~~----~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEEDNAG-----NYEEALR----LYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHHHcC-----CHHHHHH----HHHHHHHHHHHHHhhCCCH
Confidence 467888999998766432 2222222 2678899999999988843
No 418
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.50 E-value=1.1e+02 Score=28.15 Aligned_cols=82 Identities=16% Similarity=0.176 Sum_probs=46.3
Q ss_pred hCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------PSDGNILSLYADLIW 253 (277)
Q Consensus 185 ~~Gd~deAi~~yekALel-----dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld------P~n~~al~~LA~ll~ 253 (277)
..+++.-|.....-.|+. .+.+.....++..++......-.+-..+.++||+-. -.+|..+..+|..++
T Consensus 22 ~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~ 101 (260)
T PF04190_consen 22 KHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLW 101 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHH
T ss_pred HCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence 345666555444444443 344555556666666522222223445555555532 248899999999999
Q ss_pred HHcCCHHHHHHHHH
Q 023753 254 QAHKDASRAESYFD 267 (277)
Q Consensus 254 ~~~Gd~deAi~~ye 267 (277)
+ .+++.+|+.+|-
T Consensus 102 ~-e~~~~~A~~Hfl 114 (260)
T PF04190_consen 102 K-EGNYYEAERHFL 114 (260)
T ss_dssp H-TT-HHHHHHHHH
T ss_pred h-hccHHHHHHHHH
Confidence 9 999999999884
No 419
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.34 E-value=31 Score=25.35 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=24.9
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (277)
Q Consensus 188 d~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~ 240 (277)
.+++|..+..+|++.|-. .++...+ .-|.+|+++|.+++...|+
T Consensus 4 ~~~~A~~li~~Av~~d~~-----g~~~eAl----~~Y~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 4 YLSKAKELISKALKADEA-----GDYEEAL----ELYKKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHHHHHHhccCCC
Confidence 356777777777665552 1222222 2366666666666666764
No 420
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.13 E-value=41 Score=35.58 Aligned_cols=68 Identities=16% Similarity=0.024 Sum_probs=48.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 194 ~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
.+.++||++.++ +.-.+.++. +.++++.|.+...++ ++..-|..||.+... .+++..|.++|.+|..+
T Consensus 628 g~~e~AL~~s~D-~d~rFelal----~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 628 GMKEQALELSTD-PDQRFELAL----KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALS-AGELPLASECFLRARDL 695 (794)
T ss_pred cchHhhhhcCCC-hhhhhhhhh----hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhh-cccchhHHHHHHhhcch
Confidence 356677777664 333444442 467777776654443 667778899999998 99999999999998543
No 421
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=49.96 E-value=29 Score=26.54 Aligned_cols=25 Identities=24% Similarity=0.040 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
...|.-+ +..|++.+|+.+|++||+
T Consensus 10 a~~AVe~-D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 10 AINAVKA-EKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHH
Confidence 3344333 466777777777777765
No 422
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.69 E-value=1.1e+02 Score=34.68 Aligned_cols=61 Identities=16% Similarity=0.027 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 205 ~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
+.+.+|..+|.+.. ..+...+|++-|-+| +||..|...-.+.-+ .+.|++-+.|+..|-+.
T Consensus 1102 n~p~vWsqlakAQL-~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQL-QGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHH-hcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHh
Confidence 45677888887665 677788888888665 566666776676767 78888888887776543
No 423
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.31 E-value=1.1e+02 Score=23.08 Aligned_cols=44 Identities=9% Similarity=0.228 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
..|+.+.++|++.|-. .++...+. -|.+|+++|..+++..|+..
T Consensus 4 ~~a~~l~~~Ave~D~~-----g~y~eAl~----~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 4 LAAKEVLKRAVELDQE-----GRFQEALV----CYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHHHHh-----ccHHHHHH----HHHHHHHHHHHHHhhCCCHH
Confidence 5677788888766542 11222221 25667777777777787543
No 424
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=48.84 E-value=45 Score=24.08 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
+...|.-+ +..|++++|+.+|.+|+.
T Consensus 8 ~~~~Av~~-D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEA-DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHH-HHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHH
Confidence 34445444 467777777777777765
No 425
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=48.80 E-value=1.3e+02 Score=31.58 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~y 266 (277)
..+.-.+..+.++++... +-.+++.++.+|. . +..++=...+++.++.+=++...-..|+..|- +.+-..|..+|
T Consensus 80 ~k~~~veh~c~~~l~~~e-~kmal~el~q~y~-e-n~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE--kik~sk~a~~f 154 (711)
T COG1747 80 HKNQIVEHLCTRVLEYGE-SKMALLELLQCYK-E-NGNEQLYSLWERLVEYDFNDVVIGRELADKYE--KIKKSKAAEFF 154 (711)
T ss_pred hHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHH-h-cCchhhHHHHHHHHHhcchhHHHHHHHHHHHH--HhchhhHHHHH
Confidence 344455677888887654 5677888899886 3 36678888999999999999888888888664 48888999999
Q ss_pred HHHHHh
Q 023753 267 DQAVKS 272 (277)
Q Consensus 267 ekALel 272 (277)
.+|+..
T Consensus 155 ~Ka~yr 160 (711)
T COG1747 155 GKALYR 160 (711)
T ss_pred HHHHHH
Confidence 998853
No 426
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=48.49 E-value=89 Score=27.17 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=39.7
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld 238 (277)
+-.++.-++-.+.++...+-+..+|.++..+|.+|. +.|+..+|.+.+.+|-+.-
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~-klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYK-KLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HhcchhhHHHHHHHHHHhc
Confidence 334677788888888888767778999999999997 8999999999999998753
No 427
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=48.20 E-value=40 Score=24.82 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~ 240 (277)
+..|+.+..+|++.|-. .++...+ .-|..|+++|.+++...|+
T Consensus 3 ~~~a~~l~~~Av~~D~~-----g~~~~Al----~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 3 LQQAKELIKQAVKEDED-----GNYEEAL----ELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHHHHHHhccCCC
Confidence 34566666666555443 2222222 2255566666666666654
No 428
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.80 E-value=62 Score=30.94 Aligned_cols=44 Identities=20% Similarity=0.080 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ek 233 (277)
+-+|+..++.+++.+|.|..+...+..+|. ..|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~-~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYS-LLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHh
Confidence 448999999999999999999999999887 78999999998864
No 429
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.54 E-value=1e+02 Score=33.74 Aligned_cols=68 Identities=22% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 207 ~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~---------n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
|.....+|+.+. ...++++|..+..++...-|. .+.+....|.+... .+++++|+++.+.++..-|.+
T Consensus 415 P~Lvll~aW~~~-s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 415 PRLVLLQAWLLA-SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred chHHHHHHHHHH-HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccc
Confidence 334445666665 788999999999998876655 12334445677777 899999999999999887765
No 430
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=47.48 E-value=1e+02 Score=26.38 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 246 SLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 246 ~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
.+||.++.. +||.+=.++|++-|
T Consensus 54 HNLA~FWR~-~gd~~yELkYLqlA 76 (140)
T PF10952_consen 54 HNLADFWRS-QGDSDYELKYLQLA 76 (140)
T ss_pred hhHHHHHHH-cCChHHHHHHHHHH
Confidence 345554444 55555555555443
No 431
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=46.41 E-value=1.3e+02 Score=30.19 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023753 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (277)
Q Consensus 204 P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL 235 (277)
-+++..|..+|.... .+|+++-|+++|+++-
T Consensus 344 ~~~~~~W~~Lg~~AL-~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 344 LDDPEKWKQLGDEAL-RQGNIELAEECYQKAK 374 (443)
T ss_dssp CSTHHHHHHHHHHHH-HTTBHHHHHHHHHHCT
T ss_pred cCcHHHHHHHHHHHH-HcCCHHHHHHHHHhhc
Confidence 457889999999775 8999999999999873
No 432
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.00 E-value=27 Score=34.76 Aligned_cols=47 Identities=21% Similarity=0.095 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHh
Q 023753 223 DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD------------ASRAESYFDQAVKS 272 (277)
Q Consensus 223 d~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd------------~deAi~~yekALel 272 (277)
-..+|+.|+++|.. -++|..|..+|.+++. .|+ |++|...+.+|-..
T Consensus 333 l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~-LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 333 LIKKALEYLKKAQD--EDDPETWVDVAEAMID-LGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHH--S--TTHHHHHHHHHHH-HHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc--cCChhHHHHHHHHHhh-hhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 35678889998876 5677777777777766 543 56777777777543
No 433
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.89 E-value=53 Score=27.12 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 023753 192 TDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL 245 (277)
Q Consensus 192 Ai~~yekALeld-P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al 245 (277)
-+++++++-..+ +--|-++..+|.+|. ..|+.+.|.+.|+.--.+-|....+.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys-~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYS-NSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHh-hcCChHHHHHHHHHhhhhCccchhHH
Confidence 344555554443 334678889998887 89999999999999888899887654
No 434
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=45.78 E-value=53 Score=24.71 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=15.5
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 023753 219 EVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 219 e~~Gd~eeA~e~~ekALel 237 (277)
...++|++|..+|..||+.
T Consensus 17 D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 17 DQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4778999999888888764
No 435
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.33 E-value=1.1e+02 Score=30.25 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY-ADLIWQAHKDASRAESYFD 267 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L-A~ll~~~~Gd~deAi~~ye 267 (277)
..+|+.+.++|++.|-. -||..+|. -|.-|++||..+|+...++..+--.+ +.|+.- +.+.++-..|++
T Consensus 7 l~kaI~lv~kA~~eD~a-----~nY~eA~~----lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EY-LdRAEkLK~yL~ 76 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNA-----KNYEEALR----LYQNALEYFLHALKYEANNKKAKDSIRAKFTEY-LDRAEKLKAYLK 76 (439)
T ss_pred HHHHHHHHHHHhhhcch-----hchHHHHH----HHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 46899999999876542 23333332 15678899999998887666443332 222222 344444444443
No 436
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.08 E-value=64 Score=19.01 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 245 LSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 245 l~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
|..+-.++.. .++++.|..+|+...+
T Consensus 4 y~~ll~a~~~-~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAK-AGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3444455555 6666666666666544
No 437
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.98 E-value=1.1e+02 Score=32.08 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=37.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
..+|.+.+..++...-...-......|.+|..+.. .|+.++|..+|+++..
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~-~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-QGRKAEAEEILRQLMQ 374 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH-cCCHHHHHHHHHHHhc
Confidence 35677666666666444334567788889998888 8999999999999743
No 438
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.12 E-value=59 Score=23.46 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
+++|..+.++|++.|-.. ++...+ .-|.+|+++|.+++...++.
T Consensus 2 ~~~A~~~~~~Av~~D~~g-----~~~~A~----~~Y~~ai~~l~~~~~~~~~~ 45 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAG-----NYEEAL----ELYKEAIEYLMQALKSESNP 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHTT-----SHHHHH----HHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHHHCC-----CHHHHH----HHHHHHHHHHHHHhccCCCH
Confidence 367888889998877632 222222 22688999999999988643
No 439
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.66 E-value=1.9e+02 Score=30.90 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHH------------HH-HHHHHcCCHHH
Q 023753 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILSLY------------AD-LIWQAHKDASR 261 (277)
Q Consensus 203 dP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n~~al~~L------------A~-ll~~~~Gd~de 261 (277)
+.++..-|-.||.+.. ..+++..|.+||.+|-.. ...+++-+..+ |. +|+. .|++++
T Consensus 662 e~~s~~Kw~~Lg~~al-~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l-~g~~~~ 739 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAAL-SAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFL-SGDYEE 739 (794)
T ss_pred hhcchHHHHHHHHHHh-hcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHH-cCCHHH
Confidence 4566778899998775 899999999999998654 22344433333 33 3444 888888
Q ss_pred HHHHHHHH
Q 023753 262 AESYFDQA 269 (277)
Q Consensus 262 Ai~~yekA 269 (277)
+++.+...
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 88877553
No 440
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.36 E-value=2.1e+02 Score=28.30 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=60.3
Q ss_pred hhHHHHHHhCCCcHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHH
Q 023753 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAI--LANPSDGNILS 246 (277)
Q Consensus 177 ~yY~~m~e~~Gd~deAi~~yekALeldP~n--------~~al~nLA~lL~e~~Gd~eeA~e~~ekAL--eldP~n~~al~ 246 (277)
.+...+|++.+++..|...+. +|.++-.. ...+..+|.+|. ..+|..+|+.+..||- ..+..|.....
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyL-e~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYL-EDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 466788999999988876654 33333311 234557788776 7889999999999864 33456766655
Q ss_pred HH----HHHHHHHcCCHHHHHHHHHHHHH
Q 023753 247 LY----ADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 247 ~L----A~ll~~~~Gd~deAi~~yekALe 271 (277)
.+ |.++-. .++|-+|...|-+..+
T Consensus 185 e~kvc~ARvlD~-krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 185 EYKVCYARVLDY-KRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44 555544 6777777666655543
No 441
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=41.96 E-value=1.4e+02 Score=21.86 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=7.9
Q ss_pred HcCCHHHHHHHHHHHHH
Q 023753 220 VRGDFAKAEELCGRAIL 236 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALe 236 (277)
..|++++|+.+|.+|++
T Consensus 20 ~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 20 EAGDYEEALELYKKAIE 36 (77)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34444444444444443
No 442
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=41.84 E-value=1.4e+02 Score=23.19 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023753 222 GDFAKAEELCGRAILANPSDGNILSLY 248 (277)
Q Consensus 222 Gd~eeA~e~~ekALeldP~n~~al~~L 248 (277)
++..+++.-..++++.+|+||.++..|
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~ 47 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAY 47 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 344444444445555566666554443
No 443
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.35 E-value=67 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 023753 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (277)
Q Consensus 190 deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~ 243 (277)
..|+.+.++|++.|-.- +|...+. .|.+|+++|..++...-.|+.
T Consensus 4 ~~Ai~~a~~Ave~D~~g-----~y~eA~~----~Y~~aie~l~~~~~~~~~n~~ 48 (76)
T cd02681 4 RDAVQFARLAVQRDQEG-----RYSEAVF----YYKEAAQLLIYAEMAGTLNDS 48 (76)
T ss_pred HHHHHHHHHHHHHHHcc-----CHHHHHH----HHHHHHHHHHHHHHhcCCChH
Confidence 46888888888877532 2222222 267888888888776633443
No 444
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.27 E-value=71 Score=24.03 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n 241 (277)
+.+|+.+.++|++.|-.. ++...+. -|..|+++|..+++..++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g-----~y~eA~~----lY~~ale~~~~~~k~e~~~ 46 (75)
T cd02684 3 LEKAIALVVQAVKKDQRG-----DAAAALS----LYCSALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHHHHHHHhc-----cHHHHHH----HHHHHHHHHHHHHhhCCCH
Confidence 468899999998776432 2222222 2678899999999887543
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.25 E-value=1e+02 Score=30.79 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=38.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 220 ~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
...+..+-++....|+++||..+.+|..+|.-- .--..+|+..|++|++.
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE---a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEE---ATTIVDAERLFKQALKA 245 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh---hhhHHHHHHHHHHHHHH
Confidence 456777888899999999999999988776522 23456888888888865
No 446
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=39.15 E-value=2.4e+02 Score=27.95 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=50.6
Q ss_pred hCCCcHHHHHHHHHHHHh-----CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEA-----NPGNAL--LLGNYARFLKEVRGDFAKAEELCGRAIL-------ANPSDGNILSLYAD 250 (277)
Q Consensus 185 ~~Gd~deAi~~yekALel-----dP~n~~--al~nLA~lL~e~~Gd~eeA~e~~ekALe-------ldP~n~~al~~LA~ 250 (277)
.-.|.++|++++++.++. .| ++. .....|.++. ..+|..++.+.+..+-. +.|+-..-++.++.
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~-~av~~~~t~~~r~~L-~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEP-DAVIYILTEIARLKL-EINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 346888999999988764 23 232 3445666665 68899888888776655 33434445667777
Q ss_pred HHHHHcCCHHH
Q 023753 251 LIWQAHKDASR 261 (277)
Q Consensus 251 ll~~~~Gd~de 261 (277)
-|++..+++..
T Consensus 165 qYyk~~~d~a~ 175 (380)
T KOG2908|consen 165 QYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHhHHH
Confidence 77776777765
No 447
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.02 E-value=46 Score=37.63 Aligned_cols=82 Identities=18% Similarity=0.084 Sum_probs=66.7
Q ss_pred cHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCH
Q 023753 189 SSSTDAYYE-KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 189 ~deAi~~ye-kALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n~~al~~LA~ll~~~~Gd~ 259 (277)
..+++.++. ..-.+.|..+..+..++.++. ..+++++|+....+|.-+ .|+....+.+++.+.+. .+..
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~~-~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~ 1031 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLSN-RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNL 1031 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHHh-hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCc
Confidence 456666887 556678999999999999887 899999999999888755 24567778889988877 7888
Q ss_pred HHHHHHHHHHHHh
Q 023753 260 SRAESYFDQAVKS 272 (277)
Q Consensus 260 deAi~~yekALel 272 (277)
-.|...+.+|+.+
T Consensus 1032 ~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1032 SGALKSLNRALKL 1044 (1236)
T ss_pred cchhhhHHHHHHh
Confidence 8899888888765
No 448
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.79 E-value=62 Score=24.93 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHhC
Q 023753 223 DFAKAEELCGRAILAN 238 (277)
Q Consensus 223 d~eeA~e~~ekALeld 238 (277)
.|++|.++.++||..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4666777777776665
No 449
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=37.67 E-value=1.6e+02 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC--HHH-HHHHHHHHHHHcCCHHHHHHH
Q 023753 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCG--RAILANPSD--GNI-LSLYADLIWQAHKDASRAESY 265 (277)
Q Consensus 191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~e--kALeldP~n--~~a-l~~LA~ll~~~~Gd~deAi~~ 265 (277)
.-.+++++-..+.|+...+++.||.+.+ ..|+|..|-.|+- +++--+|+- ..+ |--+|.=.+ ..+++-|.+-
T Consensus 113 ~~l~~L~e~ynf~~e~i~~lykyakfqy-eCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL--~qnWd~A~ed 189 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTPERIETLYKYAKFQY-ECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL--TQNWDGALED 189 (432)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH--HhhHHHHHHH
Confidence 4455666666677888899999999998 6999998887644 555444432 222 222332222 3678888887
Q ss_pred HHHHHH
Q 023753 266 FDQAVK 271 (277)
Q Consensus 266 yekALe 271 (277)
+.+.-+
T Consensus 190 L~rLre 195 (432)
T KOG2758|consen 190 LTRLRE 195 (432)
T ss_pred HHHHHH
Confidence 776654
No 450
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.60 E-value=1.3e+02 Score=29.87 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--C---HHHHHH--HHHHHHHHcCCHHHHHHHHHH
Q 023753 213 YARFLKEVRGDFAKAEELCGRAILANPS--D---GNILSL--YADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 213 LA~lL~e~~Gd~eeA~e~~ekALeldP~--n---~~al~~--LA~ll~~~~Gd~deAi~~yek 268 (277)
++..++ ...+|..|.+.|+.++...+. . ...+.. -|..+|. .=++++|.+++++
T Consensus 136 ~~r~l~-n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAI-NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD-RFEHEEALDYLND 196 (380)
T ss_pred HHHHHH-HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH-ccCHHHHHHHHhh
Confidence 344455 689999999999999988652 1 222333 3556777 7899999999984
No 451
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=36.96 E-value=73 Score=24.13 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
...|.-+ ...|+|++|+.+|.+||+
T Consensus 10 ~~~Ave~-D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 10 LKRAVEL-DQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHH
Confidence 3344333 356677777777776665
No 452
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=36.50 E-value=65 Score=27.33 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=26.4
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 023753 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK 218 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~ 218 (277)
..|++.-|..+...++..+|+|..+....+.+|.
T Consensus 82 ~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~ 115 (141)
T PF14863_consen 82 AAGDYQWAAELLDHLVFADPDNEEARQLKADALE 115 (141)
T ss_dssp HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4688999999999999999999988888887774
No 453
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=36.14 E-value=1e+02 Score=18.69 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=11.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH
Q 023753 193 DAYYEKMIEANPGNALLLGNYAR 215 (277)
Q Consensus 193 i~~yekALeldP~n~~al~nLA~ 215 (277)
+.+..++|..+|.|..+|...-.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ 25 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRW 25 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHH
Confidence 34445555555555555554433
No 454
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.01 E-value=94 Score=30.19 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=41.3
Q ss_pred hhhHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 176 ~~yY~~m~e~~Gd~deAi~~yekALeldP~n~~----al~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
.+||-.--....+.++|+..|++++++.+.-.. ++-.+..+.+ ..++|++-.++|.+.+.
T Consensus 30 NQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f-~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 30 NQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINF-RLGNYKEMMERYKQLLT 93 (440)
T ss_pred hhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH
Confidence 445543223335788999999999999988653 4445555565 67888888777776654
No 455
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=33.69 E-value=2.7e+02 Score=22.89 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=33.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 185 NNHGSSSTDAYYEKMIEANPGN----------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (277)
Q Consensus 185 ~~Gd~deAi~~yekALeldP~n----------------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP 239 (277)
..|+.+....+.++...++.+. ...+..++..+. ..+++..|+++.+...+..|
T Consensus 14 r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~-~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 14 RSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFG-YNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred hcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHcC
Confidence 3466666666666666655222 244555555554 56777777777777777666
No 456
>PHA00370 III attachment protein
Probab=33.43 E-value=46 Score=31.43 Aligned_cols=17 Identities=6% Similarity=-0.171 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHHHhCC
Q 023753 223 DFAKAEELCGRAILANP 239 (277)
Q Consensus 223 d~eeA~e~~ekALeldP 239 (277)
+..+++..|++.-.+.-
T Consensus 254 eVYe~~I~CdKId~~k~ 270 (297)
T PHA00370 254 KVYEFIIGCDKINDFKG 270 (297)
T ss_pred chhhhhhcchhHHHHHH
Confidence 44555555555554443
No 457
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.17 E-value=99 Score=22.28 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHH
Q 023753 256 HKDASRAESYFDQAV 270 (277)
Q Consensus 256 ~Gd~deAi~~yekAL 270 (277)
.|++++|.+|+++..
T Consensus 36 lg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 36 LGKYEEAKEYIKELS 50 (62)
T ss_dssp TT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 455555555544443
No 458
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.25 E-value=78 Score=34.01 Aligned_cols=90 Identities=20% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 023753 186 NHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLK-EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (277)
Q Consensus 186 ~Gd~deAi~~yekALeldP~n----~~al~nLA~lL~-e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~d 260 (277)
..++..|..-|..++.+-|.+ +....+.+.++. ...++|.+++.-++-|+...|....++..-+.+|.. .+.++
T Consensus 66 K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a-l~k~d 144 (748)
T KOG4151|consen 66 KRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA-LNKLD 144 (748)
T ss_pred hhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH-HHHHH
Confidence 357778888888888888832 344556665553 234699999999999999999999999988888877 77788
Q ss_pred HHHHHHHHHHHhCCCC
Q 023753 261 RAESYFDQAVKSAPDD 276 (277)
Q Consensus 261 eAi~~yekALeldPdD 276 (277)
-|++-+.-.....|.+
T Consensus 145 ~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 145 LAVRDLRIVEKMDPSN 160 (748)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 8888877777777776
No 459
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.14 E-value=3.2e+02 Score=26.48 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE-------VRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e-------~~Gd~eeA~e~~ekALeldP~n~~al~~LA~l 251 (277)
++.+.....-...|++.=...+..+|....+|+---.++.. ...=.+.-+.++..+++-+|.+..++..--.+
T Consensus 38 ~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~ 117 (328)
T COG5536 38 FRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWM 117 (328)
T ss_pred HHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHH
Confidence 34444444445578888888888888777666544444431 11224667788999999999999988877666
Q ss_pred HHHHc--CCHHHHHHHHHHHHHhCCCCC
Q 023753 252 IWQAH--KDASRAESYFDQAVKSAPDDW 277 (277)
Q Consensus 252 l~~~~--Gd~deAi~~yekALeldPdD~ 277 (277)
+-. . ..+..-....++.+..+|.|+
T Consensus 118 Le~-~p~~~~~rEl~itkklld~DsrNy 144 (328)
T COG5536 118 LEL-FPKPSWGRELFITKKLLDSDSRNY 144 (328)
T ss_pred HHh-CCCcccchhHHHHHHHhccccccc
Confidence 655 3 457777778888888888774
No 460
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=32.08 E-value=1.8e+02 Score=30.03 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 191 STDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 191 eAi~~yekALeldP~n~~-al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
.|+.-|..||+.+|.-|. ++..|-.++...+++---.+.+|+..+..||.-+
T Consensus 330 ~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 330 DALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 455666666666665552 2222222222233444445566666666666543
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.07 E-value=1.4e+02 Score=24.75 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 226 KAEELCGRAILAN-PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 226 eA~e~~ekALeld-P~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
+-+++++++-..+ +--|-++..||.+|.+ .|+.+.|...|+.--++.|+
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~-~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSN-SGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhh-cCChHHHHHHHHHhhhhCcc
Confidence 3345666655544 3456788999999999 99999999999988877776
No 462
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=53 Score=35.87 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 180 NNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRA 234 (277)
Q Consensus 180 ~~m~e~~Gd~deAi~~yekALeldP~n~-~al~nLA~lL~e~~Gd~eeA~e~~ekA 234 (277)
++.|-..|+|++|.++.+.. |+.- .++...|.+++ ..++|..|.++|.+.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f-~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLF-QDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHh
Confidence 34444556666665554433 3322 34556666665 556666666666665
No 463
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=97 Score=31.39 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=43.2
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHH--HhCCCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMI--EANPGNALL--LGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekAL--eldP~n~~a--l~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
..-.+|..++.|+.|.....++. +.+.+|-++ ++-+|.+-. .+.+|..|.+||-+|+...|...
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIka-iqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKA-IQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHH-hhcchhHHHHHHHHHHHhCcchh
Confidence 33455555677788877777664 223333333 344466554 67899999999999999999843
No 464
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=31.48 E-value=96 Score=26.56 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 023753 222 GDFAKAEELCGRAILANPSDGNILSLYAD 250 (277)
Q Consensus 222 Gd~eeA~e~~ekALeldP~n~~al~~LA~ 250 (277)
-+.+.|+..|+..++..|++..++..|-.
T Consensus 90 le~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 90 LEPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp S-HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 34455566666666666655555544433
No 465
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=31.44 E-value=1.1e+02 Score=22.34 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=12.9
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 023753 219 EVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 219 e~~Gd~eeA~e~~ekALe 236 (277)
+..+++++|+.+|..|++
T Consensus 17 D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 17 DEDGNYEEALELYKEALD 34 (75)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 356777777777777765
No 466
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=30.90 E-value=1.8e+02 Score=24.83 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=41.8
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAI----LANPSDG 242 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n---------------~~al~nLA~lL~e~~Gd~eeA~e~~ekAL----eldP~n~ 242 (277)
....+++-.|+-+|++|+.+--+- .....|+|.++. .+||.+-.+.|++-|- .+-|..|
T Consensus 11 a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR-~~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 11 AFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWR-SQGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHH-HcCChHHHHHHHHHHHHHHHHhccCCC
Confidence 344678889999999998763211 123568999886 8999999999997554 4556543
No 467
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=30.39 E-value=2.3e+02 Score=29.13 Aligned_cols=71 Identities=14% Similarity=0.034 Sum_probs=52.0
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NPSDGNILSLYADLIWQ 254 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel---dP~n~~al~~LA~ll~~ 254 (277)
|...++.+-|+.+--+.|.+||.+...+..-|.+.. ...+|.+|..-+--|.-+ +-.+..-...+-.+||+
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR-~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFR-RLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 344577889999999999999999999998888776 788899888877666543 23233344445555665
No 468
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.85 E-value=3.3e+02 Score=22.66 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 226 KAEELCGRAILAN--PSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 226 eA~e~~ekALeld--P~n~~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
.+.+.|..+.... -..+..|..+|.++.. .|++.+|.+.|+.
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~-~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEA-AGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHH-cCCHHHHHHHHHc
Confidence 3566677666654 4566677788888888 9999999999975
No 469
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=29.63 E-value=84 Score=20.46 Aligned_cols=10 Identities=20% Similarity=-0.167 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 023753 245 LSLYADLIWQ 254 (277)
Q Consensus 245 l~~LA~ll~~ 254 (277)
.++||+++..
T Consensus 4 ~FnyAw~Lv~ 13 (35)
T PF14852_consen 4 QFNYAWGLVK 13 (35)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHhc
Confidence 3444444444
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.55 E-value=1.3e+02 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~ 246 (277)
..+|..+. ..|++++|..+|-+||..-|+-...+.
T Consensus 67 V~lGE~L~-~~G~~~~aa~hf~nAl~V~~qP~~LL~ 101 (121)
T PF02064_consen 67 VQLGEQLL-AQGDYEEAAEHFYNALKVCPQPAELLQ 101 (121)
T ss_dssp HHHHHHHH-HTT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34566665 678999999999999999887665443
No 471
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=28.29 E-value=1.5e+02 Score=30.77 Aligned_cols=84 Identities=17% Similarity=0.052 Sum_probs=31.4
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA-- 255 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~-- 255 (277)
.|-+++.-.|+|+.|++++-+ .+.+..--.++|.++. ..|=+.-....-...+..++.++.. .+++.+....
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~-~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~ 336 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALA-YYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTR 336 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHH-HTT-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHH-HcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHH
Confidence 455677777999999999887 3334322233444443 3343332222225666666665432 3333332221
Q ss_pred ---cCCHHHHHHHHH
Q 023753 256 ---HKDASRAESYFD 267 (277)
Q Consensus 256 ---~Gd~deAi~~ye 267 (277)
.-|..+|++||-
T Consensus 337 ~F~~td~~~Al~Y~~ 351 (613)
T PF04097_consen 337 SFEITDPREALQYLY 351 (613)
T ss_dssp TTTTT-HHHHHHHHH
T ss_pred HHhccCHHHHHHHHH
Confidence 356778888764
No 472
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.25 E-value=2.5e+02 Score=27.83 Aligned_cols=65 Identities=23% Similarity=0.168 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PSDGNI--LSLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 206 n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeld----P~n~~a--l~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
|+.-...++....+...|.++|++++++.++.- -.++.+ ....|.++++ .+|.+++.+.++.+-.
T Consensus 73 Nplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 73 NPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-INDLKEIKKLLDDLKS 143 (380)
T ss_pred ChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-cccHHHHHHHHHHHHH
Confidence 444444444444456789999999999987642 113333 3346888888 9999999988877643
No 473
>COG4371 Predicted membrane protein [Function unknown]
Probab=28.21 E-value=48 Score=31.45 Aligned_cols=7 Identities=14% Similarity=0.245 Sum_probs=3.1
Q ss_pred HHhCCCC
Q 023753 200 IEANPGN 206 (277)
Q Consensus 200 LeldP~n 206 (277)
.+.||+.
T Consensus 169 ~~aDt~t 175 (334)
T COG4371 169 QQADTDT 175 (334)
T ss_pred HhcCCCC
Confidence 3345543
No 474
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.01 E-value=1.6e+02 Score=31.01 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 191 STDAYYEKMIEAN-----PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (277)
Q Consensus 191 eAi~~yekALeld-----P~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALel 237 (277)
.++++|.+||... -.+...|.-+|.+|+ ..++|.+|+.++..|-..
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~y-R~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYY-RHKRYREALRSWAEAADV 347 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 5677777777652 223344555666677 789999999999888553
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.98 E-value=1.2e+02 Score=27.38 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 225 AKAEELCGRAILANPS------DGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 225 eeA~e~~ekALeldP~------n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
...++++.+|+..-.. -......+|..|+. .|++++|+++|+.+...
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3455555555554321 22334568999999 99999999999998654
No 476
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.84 E-value=3.9e+02 Score=26.50 Aligned_cols=89 Identities=12% Similarity=-0.020 Sum_probs=0.0
Q ss_pred hHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHH
Q 023753 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP------SDGNIL 245 (277)
Q Consensus 178 yY~~m~e~~Gd~deAi~~yekALeldP~n------~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP------~n~~al 245 (277)
.+..|...+ ++-++-+.++++..-.| ..++.+.|.+|. +.+|.+.|++.|.+..+..- +-....
T Consensus 72 ~l~~m~~~n---eeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc-qigDkena~~~~~~t~~ktvs~g~kiDVvf~~ 147 (393)
T KOG0687|consen 72 LLNSMKKAN---EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC-QIGDKENALEALRKTYEKTVSLGHKIDVVFYK 147 (393)
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHhhcccchhhHHHH
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 246 SLYADLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 246 ~~LA~ll~~~~Gd~deAi~~yekALe 271 (277)
..+|.+|.+ +.=..+-++-.+..++
T Consensus 148 iRlglfy~D-~~lV~~~iekak~liE 172 (393)
T KOG0687|consen 148 IRLGLFYLD-HDLVTESIEKAKSLIE 172 (393)
T ss_pred HHHHHhhcc-HHHHHHHHHHHHHHHH
No 477
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=27.55 E-value=28 Score=28.03 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n-~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~ 259 (277)
..+...+.......+++.++..++.. +..+..+..+|. ..+++++.+.+++ ..++ .=....+.++.+ .+-+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~-~~~~~~~l~~~L~-----~~~~-yd~~~~~~~c~~-~~l~ 86 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYI-KYDPYEKLLEFLK-----TSNN-YDLDKALRLCEK-HGLY 86 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHH-CTTTCCHHHHTTT-----SSSS-S-CTHHHHHHHT-TTSH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHH-hcCCchHHHHHcc-----cccc-cCHHHHHHHHHh-cchH
Q ss_pred HHHHHHHHH
Q 023753 260 SRAESYFDQ 268 (277)
Q Consensus 260 deAi~~yek 268 (277)
++|+..|.+
T Consensus 87 ~~a~~Ly~~ 95 (143)
T PF00637_consen 87 EEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
No 478
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=27.51 E-value=67 Score=25.38 Aligned_cols=25 Identities=44% Similarity=0.743 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCC
Q 023753 147 GGGLGNNGGKICDGRGGGDAGGGGG 171 (277)
Q Consensus 147 ggg~g~~~g~~~gg~g~g~g~g~~g 171 (277)
+|+++.++|+...|++++++++..+
T Consensus 62 ~G~gg~ggGg~~~G~~g~g~G~~~~ 86 (91)
T PF10961_consen 62 GGGGGGGGGGRGMGGGGGGGGPSPP 86 (91)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
No 479
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=26.70 E-value=60 Score=28.91 Aligned_cols=29 Identities=55% Similarity=1.093 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 023753 147 GGGLGNNGGKICDGRGGGDAGGGGGGSGF 175 (277)
Q Consensus 147 ggg~g~~~g~~~gg~g~g~g~g~~g~~~~ 175 (277)
.+|+++++|+++|+.|+..|+..++....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (186)
T PRK07772 123 GGGGGGGGGGFGGGGGGSGGGGGGGGGGG 151 (186)
T ss_pred CCCCCCCCCCccCccCCCCCCcCCCCCcc
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.39 E-value=4.9e+02 Score=25.68 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n---~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~G 257 (277)
++++..=--++....+...|+.-|+- +-+|..+|.++. ..+.++..+..|++||.....-.+=+...-.-++. ++
T Consensus 111 ~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~-~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~-~k 188 (353)
T PF15297_consen 111 NLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEP-RTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK-MK 188 (353)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hh
Q ss_pred CHHHH
Q 023753 258 DASRA 262 (277)
Q Consensus 258 d~deA 262 (277)
...++
T Consensus 189 ~~eK~ 193 (353)
T PF15297_consen 189 SQEKS 193 (353)
T ss_pred hhhhc
No 481
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=26.16 E-value=96 Score=29.90 Aligned_cols=85 Identities=25% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHH
Q 023753 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRG---------DFAKAEELCGRAILANPSD------GNILSLYADLIWQA 255 (277)
Q Consensus 191 eAi~~yekALeldP~n~~al~nLA~lL~e~~G---------d~eeA~e~~ekALeldP~n------~~al~~LA~ll~~~ 255 (277)
.|+..|...+...|.|.-++-.-+.++...-. ....|.+++.+|+...-.. ..+.+.++..++.
T Consensus 13 ~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~- 91 (368)
T COG5091 13 KALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFN- 91 (368)
T ss_pred HHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhh-
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 023753 256 HKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 256 ~Gd~deAi~~yekALeldPdD 276 (277)
..+|+-|..||.+|+.+.-++
T Consensus 92 ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 92 IKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
No 482
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.07 E-value=1.6e+02 Score=33.35 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023753 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (277)
Q Consensus 194 ~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekA 269 (277)
.+|++|.++...+-..-..+-.++- ..+..++|.++.++. +.+.+|..+|.+.++ .+...+|++-|-+|
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie-~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~-~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIE-NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA 1130 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHH-HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHh-cCchHHHHHHHHhc
No 483
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=26.02 E-value=7.1e+02 Score=26.34 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 023753 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI----------------------- 235 (277)
Q Consensus 179 Y~~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekAL----------------------- 235 (277)
..+.|..+ ..++-...+++.++.+-++...-..++..|- +.+..+|..+|.+|+
T Consensus 105 l~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE--kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i 181 (711)
T COG1747 105 LLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE--KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI 181 (711)
T ss_pred HHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH--HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc
Q ss_pred ----------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 023753 236 ----------------LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (277)
Q Consensus 236 ----------------eldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALeldPdD 276 (277)
.+.-....+++..-..++....++++|+..+...++++..|
T Consensus 182 ~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 182 GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchh
No 484
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.78 E-value=2.5e+02 Score=20.06 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 193 i~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
+..+-+.+..+| ++.+......++. .-...+++.++.+++ +-.|+.+.......+.. .|+ ++++..+.+++.-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~--~~~~~~~~~~L~~~l--~d~~~~vr~~a~~aL~~-i~~-~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALG--ELGDPEAIPALIELL--KDEDPMVRRAAARALGR-IGD-PEAIPALIKLLQD 73 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHH--CCTHHHHHHHHHHHH--TSSSHHHHHHHHHHHHC-CHH-HHTHHHHHHHHTC
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHH--HcCCHhHHHHHHHHH--cCCCHHHHHHHHHHHHH-hCC-HHHHHHHHHHHcC
Q ss_pred CCC
Q 023753 273 APD 275 (277)
Q Consensus 273 dPd 275 (277)
+++
T Consensus 74 ~~~ 76 (88)
T PF13646_consen 74 DDD 76 (88)
T ss_dssp -SS
T ss_pred CCc
No 485
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.68 E-value=1.4e+02 Score=21.41 Aligned_cols=45 Identities=13% Similarity=-0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 191 STDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 191 eAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
+.++.+-.+++..-.+..-+...-.-|. ..|++++|.+|+.+...
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gll-qlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLL-QLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH
No 486
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.43 E-value=3.9e+02 Score=26.70 Aligned_cols=79 Identities=15% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh------------------------------C
Q 023753 192 TDAYYEKMIEANPGNALLLG---NYARFLKEVRGDFAKAEELCGRAILA------------------------------N 238 (277)
Q Consensus 192 Ai~~yekALeldP~n~~al~---nLA~lL~e~~Gd~eeA~e~~ekALel------------------------------d 238 (277)
+...|+++.++-|++..+.+ +-|.+++ ..+||.+....|..|-+. +
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~-~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~ 118 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSAL-YARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYG 118 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHH-HhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcC
Q ss_pred CCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023753 239 PSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (277)
Q Consensus 239 P~n~~---al~~LA~ll~~~~Gd~deAi~~yekALel 272 (277)
|.+.+ +.+++|.-|.. ..|++.|+--|++|.+.
T Consensus 119 g~~YE~~~~n~YkaLNYm~-~nD~~~ArVEfnRan~r 154 (449)
T COG3014 119 GNIYEGVLINYYKALNYML-LNDSAKARVEFNRANER 154 (449)
T ss_pred chhHHHHHHHHHHHhhHHH-hcchhhhHHHHHHHHHH
No 487
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=25.28 E-value=1.9e+02 Score=30.27 Aligned_cols=62 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023753 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (277)
Q Consensus 181 ~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L 248 (277)
+.+..-+..++|.++|++.+..+|+ ..++.+|.-++ ..|-...|...++ ++.|.-...|.++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~ 111 (578)
T PRK15490 50 EFLHDVNETERAYALYETLIAQNND--EARYEYARRLY-NTGLAKDAQLILK---KVSNGVQKKYNNY 111 (578)
T ss_pred hhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHH-hhhhhhHHHHHHH---HhCccHhHHHHHH
No 488
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.26 E-value=1.9e+02 Score=31.54 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCCCCCcchhhHH---HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 023753 166 AGGGGGGSGFSGSNN---NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (277)
Q Consensus 166 g~g~~g~~~~~~yY~---~m~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~ 242 (277)
||++...+..+..|+ ..+.....+++|.+||.+. ...-++..+|+ ...+|++-+.+.+.. |++.
T Consensus 786 g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~~e~~~ecly-~le~f~~LE~la~~L----pe~s 852 (1189)
T KOG2041|consen 786 GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC--------GDTENQIECLY-RLELFGELEVLARTL----PEDS 852 (1189)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHhHHHHHH-HHHhhhhHHHHHHhc----Cccc
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023753 243 NILSLYADLIWQAHKDASRAESYFDQ 268 (277)
Q Consensus 243 ~al~~LA~ll~~~~Gd~deAi~~yek 268 (277)
..+-.+|..+.. .|--++|++.|-+
T Consensus 853 ~llp~~a~mf~s-vGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 853 ELLPVMADMFTS-VGMCDQAVEAYLR 877 (1189)
T ss_pred chHHHHHHHHHh-hchHHHHHHHHHh
No 489
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.16 E-value=5.2e+02 Score=23.51 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 023753 189 SSSTDAYYEKMIEANPG-------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (277)
Q Consensus 189 ~deAi~~yekALeldP~-------n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~LA~ll~~~~Gd~de 261 (277)
++.|+..++..-+-.|. .-...--.|.+.....|.+++|++.+++... +|+......-|+.+... ...+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~-Kd~~h~ 162 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE-KDPAHP 162 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc-cccccH
Q ss_pred HHHHH
Q 023753 262 AESYF 266 (277)
Q Consensus 262 Ai~~y 266 (277)
-++.|
T Consensus 163 ~lqnF 167 (200)
T cd00280 163 VLQNF 167 (200)
T ss_pred HHHhc
No 490
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=25.01 E-value=1e+02 Score=30.28 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023753 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (277)
Q Consensus 183 ~e~~Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L 248 (277)
++++...++|+.+|++|++. ++.|..-+|+..|+.|+++-|+--..+..+
T Consensus 10 ~ekd~~~kkA~~l~~~av~~----------------Eq~G~l~dai~fYR~AlqI~~diEs~~r~l 59 (366)
T KOG2997|consen 10 YEKDPLAKKAIALYEKAVLK----------------EQDGSLYDAINFYRDALQIVPDIESKYRYL 59 (366)
T ss_pred cccchHHHHHHHHHHHHHHH----------------hhcCcHHHHHHHHHhhhcCCchHHHHHHHH
No 491
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=24.58 E-value=56 Score=31.60 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=0.0
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCC
Q 023753 146 MGGGLGNNGGKICDGRGGGDAGG 168 (277)
Q Consensus 146 ~ggg~g~~~g~~~gg~g~g~g~g 168 (277)
.|+|+++++|+.++|+|+++|++
T Consensus 287 ~G~g~~gg~g~Gg~g~ggggg~~ 309 (346)
T TIGR01659 287 MGHGNMGNMGHGNMGMAGGSGMN 309 (346)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCC
No 492
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=24.41 E-value=88 Score=31.26 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC------------CHHHHHHHHHHH
Q 023753 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG------------DFAKAEELCGRA 234 (277)
Q Consensus 189 ~deAi~~yekALeldP~n~~al~nLA~lL~e~~G------------d~eeA~e~~ekA 234 (277)
+.+|+.|+++|.. -++|..|.++|.++. ..| -|.+|+.++.+|
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I-~LGNL~d~eS~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMI-DLGNLYDNESKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHH-HHHHH-SSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHh-hhhcccccchHHHHHHHHHHHHHHHHH
No 493
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=24.30 E-value=2.2e+02 Score=26.77 Aligned_cols=76 Identities=13% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCC------------CCHHHHHHHHHHHHHH
Q 023753 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANP------------SDGNILSLYADLIWQA 255 (277)
Q Consensus 193 i~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe-----ldP------------~n~~al~~LA~ll~~~ 255 (277)
+-.|++|+............++. +....|++|..++..... +.+ .-+.+++.+|..+.+
T Consensus 188 e~~~~ka~~~~~~~~~liakLa~---~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e- 263 (345)
T cd09034 188 ECFLLKAEEDKKAKLSLLARLAC---EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDE- 263 (345)
T ss_pred HHHHHHHHhcccCcHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q ss_pred cCCHHHHHHHHHHHHHh
Q 023753 256 HKDASRAESYFDQAVKS 272 (277)
Q Consensus 256 ~Gd~deAi~~yekALel 272 (277)
.+++-+|+.+++.|+..
T Consensus 264 ~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 264 ANKIGEAIARLQAALEL 280 (345)
T ss_pred cccHHHHHHHHHHHHHH
No 494
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.19 E-value=1.5e+02 Score=29.61 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 023753 210 LGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILSLYADLIWQAHKDASRAE 263 (277)
Q Consensus 210 l~nLA~lL~e~~Gd~eeA~e~~ekALel--------dP~n~~al~~LA~ll~~~~Gd~deAi 263 (277)
+...|+-.+ .++++++|...|..|..+ .-++..+++.||..+++ ..+++.++
T Consensus 44 lv~~G~~~~-~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLe-la~~e~~V 103 (400)
T KOG4563|consen 44 LVQAGRRAL-CNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLE-LAKEESQV 103 (400)
T ss_pred HHHhhhHHH-hcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHh
No 495
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=23.85 E-value=3e+02 Score=28.47 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 023753 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (277)
Q Consensus 211 ~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~-al~~LA~ll~~~~Gd~deAi~~yekALeldP 274 (277)
...+++..+...+-..|++-|..||..+|..|. ++..|-.....-+++.---+..|+..+..+|
T Consensus 315 tH~~RV~AmlNdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDp 379 (615)
T KOG3540|consen 315 THEARVEAMLNDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDP 379 (615)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
No 496
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=23.55 E-value=1.9e+02 Score=22.54 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023753 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL 236 (277)
Q Consensus 187 Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALe 236 (277)
++..+++....++++.+|+||.++..|-..+. .-.=+-.|..-.-|+++
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~-eyn~~RNaQSn~iKa~K 69 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKLS-EYNLYRNAQSNTVKVFK 69 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
No 497
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=23.46 E-value=1.4e+02 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 023753 246 SLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (277)
Q Consensus 246 ~~LA~ll~~~~Gd~deAi~~yekALeldPd 275 (277)
..+|..+.. .|++++|..+|-+||...|+
T Consensus 67 V~lGE~L~~-~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLA-QGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHhCCC
No 498
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=23.28 E-value=60 Score=22.36 Aligned_cols=18 Identities=50% Similarity=1.099 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023753 153 NGGKICDGRGGGDAGGGG 170 (277)
Q Consensus 153 ~~g~~~gg~g~g~g~g~~ 170 (277)
++|..|+|..+.++|+++
T Consensus 19 ~~G~rC~g~~gyG~Gg~~ 36 (43)
T PF10917_consen 19 GGGHRCRGSNGYGGGGGG 36 (43)
T ss_pred ccccccCCCCCcCCCCce
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=23.15 E-value=1.3e+02 Score=32.98 Aligned_cols=65 Identities=23% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----HHHHHHHcCCHHHHHHHH
Q 023753 200 IEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY-----ADLIWQAHKDASRAESYF 266 (277)
Q Consensus 200 LeldP~n~~al~nLA~lL~e~~Gd~eeA~e~~ekALeldP~n~~al~~L-----A~ll~~~~Gd~deAi~~y 266 (277)
|.....-+.++..||.++. ..|++++|-.+|-.||++|..|....... +..+.. -+..++|+..|
T Consensus 988 i~~k~k~~~vhlk~a~~le-degk~edaskhyveaiklntynitwcqavpsrfd~e~ir~-gnkpe~av~mf 1057 (1636)
T KOG3616|consen 988 IAAKDKMGEVHLKLAMFLE-DEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRA-GNKPEEAVEMF 1057 (1636)
T ss_pred HhhhccCccchhHHhhhhh-hccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHc-CCChHHHHHHh
No 500
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.02 E-value=1.8e+02 Score=36.65 Aligned_cols=91 Identities=8% Similarity=0.085 Sum_probs=0.0
Q ss_pred hHHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCCCCHHHHHHHH
Q 023753 178 SNNNYSNNN-HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK-------AEELCGRAILANPSDGNILSLYA 249 (277)
Q Consensus 178 yY~~m~e~~-Gd~deAi~~yekALeldP~n~~al~nLA~lL~e~~Gd~ee-------A~e~~ekALeldP~n~~al~~LA 249 (277)
++++++... ++.++|-+.|..|++++-.-+.+|..+|.++...-..-.. |+.||-+|+... ++..+.-.++
T Consensus 2816 ~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaRk~ia 2894 (3550)
T KOG0889|consen 2816 TLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKARKLIA 2894 (3550)
T ss_pred HhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 023753 250 DLIWQAHKDASRAESYFDQAVK 271 (277)
Q Consensus 250 ~ll~~~~Gd~deAi~~yekALe 271 (277)
.++|- =.+++|..-+.+++.
T Consensus 2895 kvLwL--ls~dda~~~l~~~~~ 2914 (3550)
T KOG0889|consen 2895 KVLWL--LSFDDSLGTLGDVFD 2914 (3550)
T ss_pred HHHHH--HHhccccchHHHHHH
Done!