Your job contains 1 sequence.
>023754
MLYHFHKGSILLFLDWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRE
TFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERS
VDDLLSFINGGNGDSKGIKTNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGG
LNDIAVSTPHKTSKLQCSTAVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSD
WPQRMQEILSLGQDRRLVQVSMNGNCSSRRCTSLDSR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023754
(277 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006407 - symbol:SK21 "AT3G61415" species:37... 529 6.5e-51 1
TAIR|locus:2050709 - symbol:SK20 "AT2G45950" species:3702... 481 7.9e-46 1
UNIPROTKB|E5RJR5 - symbol:SKP1 "S-phase kinase-associated... 130 2.2e-08 1
UNIPROTKB|Q5ZKF5 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|Q3ZCF3 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|E2RRW0 - symbol:SKP1 "Uncharacterized protein" ... 123 1.4e-07 1
UNIPROTKB|F8W8N3 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|P63208 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|P63209 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|Q4R5B9 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|Q5R512 - symbol:SKP1 "S-phase kinase-associated... 123 1.4e-07 1
UNIPROTKB|Q71U00 - symbol:skp1 "S-phase kinase-associated... 123 1.4e-07 1
MGI|MGI:103575 - symbol:Skp1a "S-phase kinase-associated ... 123 1.4e-07 1
RGD|1359648 - symbol:Skp1 "S-phase kinase-associated prot... 123 1.4e-07 1
ZFIN|ZDB-GENE-040426-1707 - symbol:skp1 "S-phase kinase-a... 123 1.4e-07 1
DICTYBASE|DDB_G0269230 - symbol:fpaA "ubiquitin ligase su... 121 2.4e-07 1
DICTYBASE|DDB_G0273615 - symbol:fpaB-2 "ubiquitin ligase ... 121 2.4e-07 1
DICTYBASE|DDB_G0273251 - symbol:fpaB-1 "ubiquitin ligase ... 121 2.4e-07 1
POMBASE|SPBC409.05 - symbol:skp1 "SCF ubiquitin ligase co... 120 3.1e-07 1
TAIR|locus:2124281 - symbol:SK11 "AT4G34210" species:3702... 116 8.8e-07 1
TAIR|locus:2139504 - symbol:SK12 "AT4G34470" species:3702... 114 1.5e-06 1
TAIR|locus:2204435 - symbol:SKP1 "AT1G75950" species:3702... 116 1.8e-06 1
ASPGD|ASPL0000044827 - symbol:sconC species:162425 "Emeri... 115 5.8e-06 1
TAIR|locus:2165825 - symbol:ASK2 "AT5G42190" species:3702... 118 5.8e-06 1
UNIPROTKB|G4N3J5 - symbol:MGG_04978 "E3 ubiquitin ligase ... 117 6.1e-06 1
UNIPROTKB|G3MZV0 - symbol:G3MZV0 "Uncharacterized protein... 114 7.4e-06 1
FB|FBgn0026175 - symbol:skpC "skpC" species:7227 "Drosoph... 112 1.5e-05 1
TAIR|locus:2093084 - symbol:SK9 "AT3G21850" species:3702 ... 108 4.2e-05 1
WB|WBGene00004807 - symbol:skr-1 species:6239 "Caenorhabd... 112 6.0e-05 1
UNIPROTKB|G5ECU1 - symbol:skr-1 "Protein SKR-1" species:6... 112 6.0e-05 1
FB|FBgn0025637 - symbol:skpA "skpA" species:7227 "Drosoph... 107 0.00015 1
FB|FBgn0026174 - symbol:skpD "skpD" species:7227 "Drosoph... 109 0.00019 1
TAIR|locus:2056956 - symbol:SK14 "AT2G03170" species:3702... 101 0.00052 1
SGD|S000002736 - symbol:SKP1 "Evolutionarily conserved ki... 106 0.00060 1
WB|WBGene00004808 - symbol:skr-2 species:6239 "Caenorhabd... 104 0.00066 1
UNIPROTKB|G5EDD8 - symbol:skr-2 "SKR-2" species:6239 "Cae... 104 0.00066 1
FB|FBgn0031074 - symbol:skpE "skpE" species:7227 "Drosoph... 102 0.00093 1
>TAIR|locus:505006407 [details] [associations]
symbol:SK21 "AT3G61415" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL132962
GO:GO:0016567 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 GO:GO:0019005 HSSP:P63208 eggNOG:COG5201
PANTHER:PTHR11165 SUPFAM:SSF81382 HOGENOM:HOG000034103
ProtClustDB:CLSN2689298 EMBL:AY084971 IPI:IPI00527962
IPI:IPI00892309 RefSeq:NP_001118876.1 RefSeq:NP_567113.1
UniGene:At.34286 ProteinModelPortal:Q8LF97 SMR:Q8LF97
EnsemblPlants:AT3G61415.1 GeneID:825314 KEGG:ath:AT3G61415
TAIR:At3g61415 InParanoid:Q8LF97 OMA:MEDDIFT PhylomeDB:Q8LF97
Genevestigator:Q8LF97 Uniprot:Q8LF97
Length = 351
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 127/245 (51%), Positives = 143/245 (58%)
Query: 28 AAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIR 87
+A SLQLKPLVDLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N DDPRIR
Sbjct: 109 SAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTMDDPRIR 168
Query: 88 LLNRLYAXXXXXXXXXXXXXXXXXXXXHVDERSVDDLLSFINGGNGDSKGIKTXXXXXXX 147
LLNRLYA HVDERSVDDLLSFING D K +KT
Sbjct: 169 LLNRLYAKKRKELKEREKLKSVEVEE-HVDERSVDDLLSFINGR--DPKVVKTSKSKKKN 225
Query: 148 XXXXDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKM 207
+Q SS K+ ++L S + + D S S L +PK
Sbjct: 226 KKRKEQKNGSSNGTCEALEKDLHNLDSKSQSAEIVDNTASCLGDVSNLPSMEDDIFTPKT 285
Query: 208 EFXXXXXXXXXXPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCS 267
EF PA+KE LDREVEDFARRLNS W +LS+GQ+R+ V S+NGN +
Sbjct: 286 EFEDGYIDDEIDPALKELLDREVEDFARRLNSSW------VLSIGQERQPVNFSINGNGT 339
Query: 268 SRRCT 272
SRR T
Sbjct: 340 SRRLT 344
>TAIR|locus:2050709 [details] [associations]
symbol:SK20 "AT2G45950" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016567
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GO:GO:0019005 eggNOG:COG5201 PANTHER:PTHR11165 SUPFAM:SSF81382
EMBL:AC004665 EMBL:AF370493 EMBL:AY081697 IPI:IPI00524579
IPI:IPI00846808 IPI:IPI00877396 PIR:T02452 RefSeq:NP_001078065.1
RefSeq:NP_566058.2 UniGene:At.12716 UniGene:At.49380
ProteinModelPortal:A8MQG7 SMR:A8MQG7 IntAct:A8MQG7
EnsemblPlants:AT2G45950.2 GeneID:819203 KEGG:ath:AT2G45950
TAIR:At2g45950 HOGENOM:HOG000034103 InParanoid:A8MQG7 OMA:DEIDPAM
PhylomeDB:A8MQG7 ProtClustDB:CLSN2689298 Genevestigator:A8MQG7
Uniprot:A8MQG7
Length = 352
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 124/249 (49%), Positives = 146/249 (58%)
Query: 28 AAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIR 87
+A SLQLKPLVDLTSRALARIIEGK PEEIRE FHLPDDLTEEEKLEPL N DDPRIR
Sbjct: 109 SAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLEPLKNSMDDPRIR 168
Query: 88 LLNRLYAXXXXXXXXXXXXXXXXXXXXHVDERSVDDLLSFINGGNGDSKGIKTXXXXXXX 147
LLNRLYA HVDERSVDDLLSFING D K +K
Sbjct: 169 LLNRLYAKKRKELKERERLKNVEVEE-HVDERSVDDLLSFINGR--DHKAVKMSKGKKKK 225
Query: 148 XXXXDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCSTAVTCSPKM 207
DQ K S+NN++ KE + L S + +I S + L ++ +P
Sbjct: 226 KKKKDQ-KIVSSNNIHD--KESHDLRSK--QQCVEEIGSSMREVPNLLSAEDDIS-TPNA 279
Query: 208 EFXXXXXXXXXXPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCS 267
PAM+E LDREVEDFA+RLNS+W + SLG++RR V S+NGN +
Sbjct: 280 GSEDEDIDDEIDPAMRELLDREVEDFAQRLNSNW------VRSLGKERRPVHFSINGNGT 333
Query: 268 SRRCTSLDS 276
+RR T + S
Sbjct: 334 TRRHTGMVS 342
>UNIPROTKB|E5RJR5 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 HGNC:HGNC:10899 ChiTaRS:SKP1
EMBL:AC104109 EMBL:AC011336 IPI:IPI00974176
ProteinModelPortal:E5RJR5 SMR:E5RJR5 Ensembl:ENST00000521216
ArrayExpress:E5RJR5 Bgee:E5RJR5 Uniprot:E5RJR5
Length = 163
Score = 130 (50.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 17 YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
Y + + QAA L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 95 YTLRKTTVSLQAANY-LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|Q5ZKF5 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9031 "Gallus gallus" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0031519 "PcG protein complex"
evidence=IEA] [GO:0035518 "histone H2A monoubiquitination"
evidence=IEA] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=ISS] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
UniPathway:UPA00143 GO:GO:0005829 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 GO:GO:0019005
GO:GO:0004842 HSSP:P63208 eggNOG:COG5201 HOGENOM:HOG000172184
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:0035518 GO:GO:0031519 OMA:VIQWCTY CTD:6500
GeneTree:ENSGT00390000012652 HOVERGEN:HBG057008 OrthoDB:EOG498V26
EMBL:AJ720129 IPI:IPI00591045 RefSeq:NP_001006153.1
UniGene:Gga.1718 ProteinModelPortal:Q5ZKF5 SMR:Q5ZKF5 STRING:Q5ZKF5
PRIDE:Q5ZKF5 Ensembl:ENSGALT00000010461 GeneID:416319
KEGG:gga:416319 InParanoid:Q5ZKF5 NextBio:20819793 Uniprot:Q5ZKF5
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|Q3ZCF3 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9913 "Bos taurus" [GO:0005829 "cytosol" evidence=ISS]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0035518 "histone H2A
monoubiquitination" evidence=IEA] [GO:0031519 "PcG protein complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
UniPathway:UPA00143 GO:GO:0005829 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0019005 GO:GO:0004842
HSSP:P63208 eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:0035518 GO:GO:0031519 GO:GO:0031146
OMA:VIQWCTY EMBL:BT029901 EMBL:BC102435 IPI:IPI00699118
RefSeq:NP_001029953.1 UniGene:Bt.87240 ProteinModelPortal:Q3ZCF3
SMR:Q3ZCF3 STRING:Q3ZCF3 PRIDE:Q3ZCF3 Ensembl:ENSBTAT00000035306
GeneID:615427 KEGG:bta:615427 CTD:6500 GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 InParanoid:Q3ZCF3 OrthoDB:EOG498V26
NextBio:20899611 Uniprot:Q3ZCF3
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|E2RRW0 [details] [associations]
symbol:SKP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035518 "histone H2A monoubiquitination"
evidence=IEA] [GO:0031519 "PcG protein complex" evidence=IEA]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
GO:GO:0005829 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 GO:GO:0019005 GO:GO:0004842 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0035518
GO:GO:0031519 GeneTree:ENSGT00390000012652 OMA:IMNILEV
EMBL:AAEX03007782 Ensembl:ENSCAFT00000001535 Uniprot:E2RRW0
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|F8W8N3 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 HGNC:HGNC:10899 ChiTaRS:SKP1
EMBL:AC104109 EMBL:AC011336 IPI:IPI00985006
ProteinModelPortal:F8W8N3 SMR:F8W8N3 Ensembl:ENST00000328392
ArrayExpress:F8W8N3 Bgee:F8W8N3 Uniprot:F8W8N3
Length = 158
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|P63208 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=IDA] [GO:0031146 "SCF-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA]
[GO:0016567 "protein ubiquitination" evidence=IDA] [GO:0035518
"histone H2A monoubiquitination" evidence=IDA] [GO:0031519 "PcG
protein complex" evidence=IDA] [GO:0000080 "G1 phase of mitotic
cell cycle" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0007219 "Notch signaling pathway" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0031145
"anaphase-promoting complex-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0051437 "positive regulation of ubiquitin-protein ligase
activity involved in mitotic cell cycle" evidence=TAS] [GO:0051439
"regulation of ubiquitin-protein ligase activity involved in
mitotic cell cycle" evidence=TAS] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 GO:GO:0005829
Reactome:REACT_111102 Reactome:REACT_116125 Reactome:REACT_6900
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0016032 EMBL:CH471062
GO:GO:0000082 GO:GO:0007219 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0019005 GO:GO:0004842 GO:GO:0000084
GO:GO:0031145 GO:GO:0051437 eggNOG:COG5201 HOGENOM:HOG000172184
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:0000080 GO:GO:0035518 Reactome:REACT_24941
GO:GO:0031146 PDB:2AST PDBsum:2AST PDB:2ASS PDBsum:2ASS PDB:1P22
PDBsum:1P22 PDB:1LDK PDBsum:1LDK PDB:2E31 PDB:2E32 PDBsum:2E31
PDBsum:2E32 PDB:3L2O PDBsum:3L2O PDB:2OVP PDB:2OVQ PDB:2OVR
PDBsum:2OVP PDBsum:2OVQ PDBsum:2OVR OMA:VIQWCTY CTD:6500
HOVERGEN:HBG057008 OrthoDB:EOG498V26 EMBL:U33760 EMBL:Z47087
EMBL:BC009839 EMBL:BC020798 EMBL:BC025673 EMBL:BC065730 EMBL:U37558
IPI:IPI00172421 IPI:IPI00301364 PIR:I39170 RefSeq:NP_008861.2
RefSeq:NP_733779.1 UniGene:Hs.171626 PDB:1FQV PDB:1FS1 PDB:1FS2
PDBsum:1FQV PDBsum:1FS1 PDBsum:1FS2 ProteinModelPortal:P63208
SMR:P63208 DIP:DIP-31606N IntAct:P63208 MINT:MINT-5001195
STRING:P63208 PhosphoSite:P63208 DMDM:52783797 SWISS-2DPAGE:P63208
PaxDb:P63208 PeptideAtlas:P63208 PRIDE:P63208 DNASU:6500
Ensembl:ENST00000353411 Ensembl:ENST00000517625
Ensembl:ENST00000522552 Ensembl:ENST00000522855 GeneID:6500
KEGG:hsa:6500 UCSC:uc003kzc.4 UCSC:uc003kzd.4 GeneCards:GC05M133521
H-InvDB:HIX0129723 HGNC:HGNC:10899 HPA:CAB012982 MIM:601434
neXtProt:NX_P63208 PharmGKB:PA162403424 InParanoid:P63208
PhylomeDB:P63208 ChiTaRS:SKP1 EvolutionaryTrace:P63208
GenomeRNAi:6500 NextBio:25267 ArrayExpress:P63208 Bgee:P63208
CleanEx:HS_SKP1 Genevestigator:P63208 GermOnline:ENSG00000113558
Uniprot:P63208
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|P63209 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:10141 "Cavia porcellus" [GO:0005829 "cytosol" evidence=ISS]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0016567
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0019005
eggNOG:COG5201 HOGENOM:HOG000172184 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0031146
CTD:6500 HOVERGEN:HBG057008 OrthoDB:EOG498V26 EMBL:Z35481
PIR:A57630 RefSeq:NP_001166486.1 ProteinModelPortal:P63209
SMR:P63209 MINT:MINT-108497 STRING:P63209 PRIDE:P63209
GeneID:100135616 InParanoid:P63209 Uniprot:P63209
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|Q4R5B9 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9541 "Macaca fascicularis" [GO:0005829 "cytosol"
evidence=ISS] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=ISS] [GO:0031146 "SCF-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
GO:GO:0005829 GO:GO:0016567 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0019005 HSSP:P63208 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0031146
HOVERGEN:HBG057008 EMBL:AB169346 EMBL:AB169625
ProteinModelPortal:Q4R5B9 SMR:Q4R5B9 PRIDE:Q4R5B9 Uniprot:Q4R5B9
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|Q5R512 [details] [associations]
symbol:SKP1 "S-phase kinase-associated protein 1"
species:9601 "Pongo abelii" [GO:0005829 "cytosol" evidence=ISS]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0016567
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0019005
HSSP:P63208 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0031146 OMA:VIQWCTY
CTD:6500 GeneTree:ENSGT00390000012652 HOVERGEN:HBG057008
EMBL:CR860371 EMBL:CR861073 RefSeq:NP_001127637.1 UniGene:Pab.18558
ProteinModelPortal:Q5R512 SMR:Q5R512 PRIDE:Q5R512
Ensembl:ENSPPYT00000018360 GeneID:100174716 KEGG:pon:100174716
InParanoid:Q5R512 Uniprot:Q5R512
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>UNIPROTKB|Q71U00 [details] [associations]
symbol:skp1 "S-phase kinase-associated protein 1"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=ISS] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
UniPathway:UPA00143 GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 GO:GO:0019005
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 CTD:6500 HOVERGEN:HBG057008 EMBL:AF176352
EMBL:AF169342 EMBL:BC054184 RefSeq:NP_001080844.1 UniGene:Xl.57174
ProteinModelPortal:Q71U00 SMR:Q71U00 IntAct:Q71U00 PRIDE:Q71U00
GeneID:380538 KEGG:xla:380538 Xenbase:XB-GENE-919643 Uniprot:Q71U00
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>MGI|MGI:103575 [details] [associations]
symbol:Skp1a "S-phase kinase-associated protein 1A"
species:10090 "Mus musculus" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISO;IC] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IC]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=ISO;IC] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISO;IDA] [GO:0031146 "SCF-dependent proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO;IDA]
[GO:0035518 "histone H2A monoubiquitination" evidence=ISO]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
MGI:MGI:103575 GO:GO:0005829 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0019005 GO:GO:0004842 eggNOG:COG5201
HOGENOM:HOG000172184 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0035518 GO:GO:0031519
GO:GO:0031146 OMA:VIQWCTY GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 OrthoDB:EOG498V26 ChiTaRS:SKP1 EMBL:AF083214
EMBL:AK002983 EMBL:AK010628 EMBL:AK012498 EMBL:AK014245
EMBL:AK027909 EMBL:AK078330 EMBL:AK088339 EMBL:BC002115
IPI:IPI00331163 RefSeq:NP_035673.3 UniGene:Mm.42944
ProteinModelPortal:Q9WTX5 SMR:Q9WTX5 IntAct:Q9WTX5 STRING:Q9WTX5
PhosphoSite:Q9WTX5 REPRODUCTION-2DPAGE:Q9WTX5 PaxDb:Q9WTX5
PRIDE:Q9WTX5 Ensembl:ENSMUST00000037324 Ensembl:ENSMUST00000109072
GeneID:21402 KEGG:mmu:21402 CTD:21402 InParanoid:Q9WTX5
NextBio:300668 Bgee:Q9WTX5 CleanEx:MM_SKP1A Genevestigator:Q9WTX5
GermOnline:ENSMUSG00000036309 Uniprot:Q9WTX5
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>RGD|1359648 [details] [associations]
symbol:Skp1 "S-phase kinase-associated protein 1" species:10116
"Rattus norvegicus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=ISO;ISS]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=ISO]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS]
[GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISO;ISS] [GO:0031519 "PcG protein
complex" evidence=IEA;ISO] [GO:0035518 "histone H2A
monoubiquitination" evidence=IEA;ISO] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 RGD:1359648 GO:GO:0005829
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0019005
GO:GO:0004842 eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:0035518 GO:GO:0031519 GO:GO:0031146
OMA:VIQWCTY CTD:6500 GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 OrthoDB:EOG498V26 EMBL:BC058152 IPI:IPI00369350
RefSeq:NP_001007609.1 UniGene:Rn.3477 ProteinModelPortal:Q6PEC4
SMR:Q6PEC4 DIP:DIP-29863N IntAct:Q6PEC4 STRING:Q6PEC4
PhosphoSite:Q6PEC4 PRIDE:Q6PEC4 Ensembl:ENSRNOT00000007676
GeneID:287280 KEGG:rno:287280 UCSC:RGD:1359648 InParanoid:Q6PEC4
NextBio:625795 ArrayExpress:Q6PEC4 Genevestigator:Q6PEC4
GermOnline:ENSRNOG00000005828 Uniprot:Q6PEC4
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>ZFIN|ZDB-GENE-040426-1707 [details] [associations]
symbol:skp1 "S-phase kinase-associated protein 1"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0016310 "phosphorylation"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 ZFIN:ZDB-GENE-040426-1707
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0016301
GO:GO:0006511 eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 OMA:KNWDADF CTD:6500 GeneTree:ENSGT00390000012652
HOVERGEN:HBG057008 OrthoDB:EOG498V26 EMBL:FP017197 EMBL:BC059536
EMBL:AY648843 IPI:IPI00501108 RefSeq:NP_957037.1 UniGene:Dr.83245
SMR:Q6PBY8 STRING:Q6PBY8 Ensembl:ENSDART00000008454 GeneID:393716
KEGG:dre:393716 InParanoid:Q6PBY8 NextBio:20814718 Uniprot:Q6PBY8
Length = 163
Score = 123 (48.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 152
>DICTYBASE|DDB_G0269230 [details] [associations]
symbol:fpaA "ubiquitin ligase subunit SKP1"
species:44689 "Dictyostelium discoideum" [GO:0005515 "protein
binding" evidence=IPI] [GO:0030587 "sorocarp development"
evidence=IMP] [GO:0005938 "cell cortex" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016567 "protein ubiquitination"
evidence=TAS] [GO:0019005 "SCF ubiquitin ligase complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 dictyBase:DDB_G0269230
GO:GO:0005938 GO:GO:0005634 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0030587 GO:GO:0006511
GO:GO:0019005 eggNOG:COG5201 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 EMBL:U18063
EMBL:U73685 PIR:A55969 RefSeq:XP_646453.1 ProteinModelPortal:P52285
SMR:P52285 IntAct:P52285 GlycoSuiteDB:P52285 PRIDE:P52285
EnsemblProtists:DDB0191107 GeneID:8617413 KEGG:ddi:DDB_G0269230
OMA:KNWDADF ProtClustDB:CLSZ2729221 Uniprot:P52285
Length = 162
Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +KPL+D+T + +A +I GKTPEEIR+ F++ +D T EEE++ N +D
Sbjct: 106 LDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEWCED 158
>DICTYBASE|DDB_G0273615 [details] [associations]
symbol:fpaB-2 "ubiquitin ligase subunit SKP1"
species:44689 "Dictyostelium discoideum" [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0005938 "cell cortex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=TAS] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 dictyBase:DDB_G0273615
dictyBase:DDB_G0273251 GO:GO:0005938 GO:GO:0005634
GenomeReviews:CM000151_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0030587 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006511 GO:GO:0019005 HSSP:P63208
eggNOG:COG5201 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 PIR:A55969
ProtClustDB:CLSZ2729221 EMBL:U73686 RefSeq:XP_644424.1
RefSeq:XP_644826.1 ProteinModelPortal:Q557E4 SMR:Q557E4
PRIDE:Q557E4 EnsemblProtists:DDB0185043 EnsemblProtists:DDB0266780
GeneID:8618928 GeneID:8619049 KEGG:ddi:DDB_G0273251
KEGG:ddi:DDB_G0273615 OMA:VIQWCTY Uniprot:Q557E4
Length = 162
Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +KPL+D+T + +A +I GKTPEEIR+ F++ +D T EEE++ N +D
Sbjct: 106 LDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEWCED 158
>DICTYBASE|DDB_G0273251 [details] [associations]
symbol:fpaB-1 "ubiquitin ligase subunit SKP1"
species:44689 "Dictyostelium discoideum" [GO:0030587 "sorocarp
development" evidence=IMP] [GO:0005938 "cell cortex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=TAS] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 dictyBase:DDB_G0273615
dictyBase:DDB_G0273251 GO:GO:0005938 GO:GO:0005634
GenomeReviews:CM000151_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0030587 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006511 GO:GO:0019005 HSSP:P63208
eggNOG:COG5201 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 PIR:A55969
ProtClustDB:CLSZ2729221 EMBL:U73686 RefSeq:XP_644424.1
RefSeq:XP_644826.1 ProteinModelPortal:Q557E4 SMR:Q557E4
PRIDE:Q557E4 EnsemblProtists:DDB0185043 EnsemblProtists:DDB0266780
GeneID:8618928 GeneID:8619049 KEGG:ddi:DDB_G0273251
KEGG:ddi:DDB_G0273615 OMA:VIQWCTY Uniprot:Q557E4
Length = 162
Score = 121 (47.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +KPL+D+T + +A +I GKTPEEIR+ F++ +D T EEE++ N +D
Sbjct: 106 LDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEWCED 158
>POMBASE|SPBC409.05 [details] [associations]
symbol:skp1 "SCF ubiquitin ligase complex subunit Skp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000920 "cytokinetic
cell separation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006998 "nuclear envelope organization"
evidence=IMP] [GO:0007035 "vacuolar acidification" evidence=ISO]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IMP]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IGI]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA]
[GO:0030163 "protein catabolic process" evidence=IMP] [GO:0042493
"response to drug" evidence=IGI] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IC] [GO:0043291 "RAVE complex" evidence=IPI]
[GO:0045841 "negative regulation of mitotic metaphase/anaphase
transition" evidence=IMP] [GO:0070072 "vacuolar proton-transporting
V-type ATPase complex assembly" evidence=TAS] [GO:2000060 "positive
regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IMP]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 PomBase:SPBC409.05
GO:GO:0005829 GO:GO:0005634 GO:GO:0005773 GO:GO:0007095
GO:GO:0007067 GO:GO:0042493 EMBL:CU329671 GenomeReviews:CU329671_GR
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006998
GO:GO:0030163 GO:GO:0000920 GO:GO:0006511 GO:GO:0019005
GO:GO:0070072 HSSP:P63208 eggNOG:COG5201 HOGENOM:HOG000172184
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:2000060 GO:GO:0007035 GO:GO:0045841
EMBL:AB027472 GO:GO:0043291 OMA:VIQWCTY OrthoDB:EOG4T1MX2
EMBL:AB067633 EMBL:AF071066 PIR:T45459 RefSeq:NP_595455.1
ProteinModelPortal:Q9Y709 SMR:Q9Y709 IntAct:Q9Y709 STRING:Q9Y709
EnsemblFungi:SPBC409.05.1 GeneID:2540917 KEGG:spo:SPBC409.05
NextBio:20802032 Uniprot:Q9Y709
Length = 161
Score = 120 (47.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +KPL+D + +A +I GK+PE+IR+TF++P+D T EEE++ N +D
Sbjct: 108 LDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAED 160
>TAIR|locus:2124281 [details] [associations]
symbol:SK11 "AT4G34210" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 EMBL:AL021961
EMBL:AL161585 HSSP:P63208 eggNOG:COG5201 HOGENOM:HOG000172184
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 EMBL:DQ446893 EMBL:DQ653243 IPI:IPI00541308
PIR:T05415 RefSeq:NP_567959.1 UniGene:At.54598
ProteinModelPortal:O49484 SMR:O49484 IntAct:O49484 STRING:O49484
EnsemblPlants:AT4G34210.1 GeneID:829569 KEGG:ath:AT4G34210
TAIR:At4g34210 InParanoid:O49484 OMA:HHVDEAN PhylomeDB:O49484
ProtClustDB:CLSN2689755 Genevestigator:O49484 Uniprot:O49484
Length = 152
Score = 116 (45.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+DLT + +A +I+GKTPEEIR TF++ +D T EE+
Sbjct: 100 LNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEE 140
>TAIR|locus:2139504 [details] [associations]
symbol:SK12 "AT4G34470" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 EMBL:AL161585
EMBL:AL023094 HSSP:P63208 eggNOG:COG5201 HOGENOM:HOG000172184
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 ProtClustDB:CLSN2689755 IPI:IPI00526402 PIR:T05267
RefSeq:NP_567967.1 UniGene:At.65453 ProteinModelPortal:O65674
SMR:O65674 IntAct:O65674 STRING:O65674 EnsemblPlants:AT4G34470.1
GeneID:829598 KEGG:ath:AT4G34470 TAIR:At4g34470 InParanoid:O65674
OMA:IRRAFNI PhylomeDB:O65674 Genevestigator:O65674 Uniprot:O65674
Length = 152
Score = 114 (45.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L DLT + +A +I+GKTPEEIR TF++ +D T EE+
Sbjct: 100 LNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEE 140
>TAIR|locus:2204435 [details] [associations]
symbol:SKP1 "AT1G75950" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0019005 "SCF ubiquitin
ligase complex" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007140 "male meiosis" evidence=IMP] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=RCA;TAS]
[GO:0000151 "ubiquitin ligase complex" evidence=TAS] [GO:0005819
"spindle" evidence=IDA] [GO:0009524 "phragmoplast" evidence=IDA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IMP] [GO:0046686 "response to cadmium ion" evidence=IEP]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000226 "microtubule cytoskeleton organization"
evidence=IMP] [GO:0007067 "mitosis" evidence=RCA;TAS] [GO:0042023
"DNA endoreduplication" evidence=RCA] [GO:0042752 "regulation of
circadian rhythm" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
GO:GO:0007275 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0005886 GO:GO:0005634 GO:GO:0046686 GO:GO:0019048
GO:GO:0007059 GO:GO:0000226 GO:GO:0009734 GO:GO:0009873
GO:GO:0005819 EMBL:AC007396 GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 eggNOG:COG5201
HOGENOM:HOG000172184 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 GO:GO:0009524 GO:GO:0045910
PDB:3OGK PDB:3OGL PDB:3OGM PDBsum:3OGK PDBsum:3OGL PDBsum:3OGM
PDB:2P1N PDB:2P1O PDB:2P1Q PDBsum:2P1N PDBsum:2P1O PDBsum:2P1Q
EMBL:U60981 EMBL:U97020 EMBL:AF059294 EMBL:AY080884 EMBL:AY113971
EMBL:U70034 IPI:IPI00540205 PIR:T51309 RefSeq:NP_565123.1
UniGene:At.23531 PDB:2P1M PDB:2P1P PDB:3C6N PDB:3C6O PDB:3C6P
PDBsum:2P1M PDBsum:2P1P PDBsum:3C6N PDBsum:3C6O PDBsum:3C6P
ProteinModelPortal:Q39255 SMR:Q39255 DIP:DIP-31325N IntAct:Q39255
STRING:Q39255 PaxDb:Q39255 PRIDE:Q39255 EnsemblPlants:AT1G75950.1
GeneID:843928 KEGG:ath:AT1G75950 GeneFarm:4981 TAIR:At1g75950
InParanoid:Q39255 OMA:DDLKAWD PhylomeDB:Q39255
EvolutionaryTrace:Q39255 Genevestigator:Q39255 GermOnline:AT1G75950
Uniprot:Q39255
Length = 160
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+DLT + +A +I+GKTPEEIR TF++ +D T EE+ E
Sbjct: 108 LNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEE 150
>ASPGD|ASPL0000044827 [details] [associations]
symbol:sconC species:162425 "Emericella nidulans"
[GO:0006790 "sulfur compound metabolic process" evidence=IEP]
[GO:0045116 "protein neddylation" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IEA] [GO:0031146
"SCF-dependent proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0042787 "protein ubiquitination involved
in ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0007035 "vacuolar acidification" evidence=IEA] [GO:2000060
"positive regulation of protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0045841 "negative regulation of mitotic metaphase/anaphase
transition" evidence=IEA] [GO:0000920 "cytokinetic cell separation"
evidence=IEA] [GO:0000921 "septin ring assembly" evidence=IEA]
[GO:0006998 "nuclear envelope organization" evidence=IEA]
[GO:0051382 "kinetochore assembly" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0043254 "regulation of protein
complex assembly" evidence=IEA] [GO:0000082 "G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0007096 "regulation of exit
from mitosis" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0043295 "glutathione binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0043291 "RAVE
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031518 "CBF3 complex" evidence=IEA] [GO:0019005 "SCF ubiquitin
ligase complex" evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
UniPathway:UPA00143 EMBL:BN001307 GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 EMBL:AACD01000038 GO:GO:0006511
eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 EMBL:U75874
RefSeq:XP_659906.1 HSSP:P34991 ProteinModelPortal:Q5BAX8 SMR:Q5BAX8
STRING:Q5BAX8 GeneID:2874613 KEGG:ani:AN2302.2 OMA:IMNILEV
OrthoDB:EOG4T1MX2 Uniprot:Q5BAX8
Length = 161
Score = 115 (45.5 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 20/41 (48%), Positives = 33/41 (80%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 108 LDIKPLLDIGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 148
>TAIR|locus:2165825 [details] [associations]
symbol:ASK2 "AT5G42190" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA;RCA;TAS] [GO:0019005 "SCF ubiquitin
ligase complex" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009793 "embryo development ending in seed
dormancy" evidence=IGI] [GO:0042023 "DNA endoreduplication"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=RCA] [GO:0043248 "proteasome assembly"
evidence=RCA] [GO:0051510 "regulation of unidimensional cell
growth" evidence=RCA] [GO:0051788 "response to misfolded protein"
evidence=RCA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
UniPathway:UPA00143 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0019048 GO:GO:0007059 GO:GO:0009734
GO:GO:0009873 GO:GO:0009793 GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 EMBL:AB017067 GO:GO:0006511
eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382
UniGene:At.23304 OMA:KNWDADF EMBL:U97021 EMBL:AF059295
EMBL:BT004798 EMBL:AK227773 IPI:IPI00540947 RefSeq:NP_568603.1
UniGene:At.71056 ProteinModelPortal:Q9FHW7 SMR:Q9FHW7
DIP:DIP-31326N IntAct:Q9FHW7 STRING:Q9FHW7 PaxDb:Q9FHW7
PRIDE:Q9FHW7 EnsemblPlants:AT5G42190.1 GeneID:834224
KEGG:ath:AT5G42190 GeneFarm:4982 TAIR:At5g42190 InParanoid:Q9FHW7
PhylomeDB:Q9FHW7 ProtClustDB:CLSN2917730 Genevestigator:Q9FHW7
GermOnline:AT5G42190 Uniprot:Q9FHW7
Length = 171
Score = 118 (46.6 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+DLT + +A +I+GKTPEEIR+TF++ +D T EE+ E
Sbjct: 119 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 161
>UNIPROTKB|G4N3J5 [details] [associations]
symbol:MGG_04978 "E3 ubiquitin ligase complex SCF subunit
scon-3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
EMBL:CM001233 GO:GO:0016874 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382
RefSeq:XP_003712477.1 ProteinModelPortal:G4N3J5 SMR:G4N3J5
EnsemblFungi:MGG_04978T0 GeneID:2675549 KEGG:mgr:MGG_04978
Uniprot:G4N3J5
Length = 168
Score = 117 (46.2 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +KPL+D+ + +A +I+GK+PEEIR+TF++ +D T EEE++ N +D
Sbjct: 115 LDIKPLLDVGCKTVANMIKGKSPEEIRKTFNITNDFTPEEEEQIRRENEWAED 167
>UNIPROTKB|G3MZV0 [details] [associations]
symbol:G3MZV0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GeneTree:ENSGT00390000012652 OMA:IMNILEV
EMBL:DAAA02025649 PRIDE:G3MZV0 Ensembl:ENSBTAT00000063619
NextBio:20927407 Uniprot:G3MZV0
Length = 160
Score = 114 (45.2 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 21/43 (48%), Positives = 34/43 (79%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 75
L +K L+D+T + +A +I+GKT EEIR+TF++ +D TEEE+ +
Sbjct: 107 LDIKGLLDVTCKTVANMIKGKTREEIRKTFNIKNDFTEEEEAQ 149
>FB|FBgn0026175 [details] [associations]
symbol:skpC "skpC" species:7227 "Drosophila melanogaster"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
EMBL:AE014298 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 eggNOG:COG5201 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382
GeneTree:ENSGT00390000012652 HSSP:P34991 OrthoDB:EOG4K6DMM
EMBL:AF220068 EMBL:BT120007 RefSeq:NP_608358.1 UniGene:Dm.26675
SMR:Q9VWC4 IntAct:Q9VWC4 MINT:MINT-763311 STRING:Q9VWC4
EnsemblMetazoa:FBtr0074797 GeneID:32996 KEGG:dme:Dmel_CG11941
UCSC:CG11941-RA CTD:32996 FlyBase:FBgn0026175 InParanoid:Q9VWC4
OMA:HMIEESS GenomeRNAi:32996 NextBio:781428 Uniprot:Q9VWC4
Length = 158
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDL 68
L++K LVDL + +A +I GKTPEEIR TF++PD++
Sbjct: 112 LEIKGLVDLCCKTVANMIRGKTPEEIRHTFNIPDEI 147
>TAIR|locus:2093084 [details] [associations]
symbol:SK9 "AT3G21850" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042023 "DNA
endoreduplication" evidence=RCA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=RCA]
[GO:0043248 "proteasome assembly" evidence=RCA] [GO:0051510
"regulation of unidimensional cell growth" evidence=RCA]
[GO:0051788 "response to misfolded protein" evidence=RCA]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 UniPathway:UPA00143
GO:GO:0005634 GO:GO:0007346 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0016567 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
EMBL:AB025634 GO:GO:0006511 HSSP:P63208 eggNOG:COG5201
HOGENOM:HOG000172184 KO:K03094 ProtClustDB:CLSN2688652
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 EMBL:DQ446683 EMBL:DQ653099 IPI:IPI00543724
RefSeq:NP_566694.1 UniGene:At.70382 ProteinModelPortal:Q9LSX9
SMR:Q9LSX9 IntAct:Q9LSX9 STRING:Q9LSX9 PaxDb:Q9LSX9 PRIDE:Q9LSX9
EnsemblPlants:AT3G21850.1 GeneID:821739 KEGG:ath:AT3G21850
TAIR:At3g21850 InParanoid:Q9LSX9 OMA:ARQCQII Genevestigator:Q9LSX9
Uniprot:Q9LSX9
Length = 153
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L DL + +A II+G TPE+IRE F++ +DLT EE+
Sbjct: 101 LNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEE 141
>WB|WBGene00004807 [details] [associations]
symbol:skr-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0040035
GO:GO:0006511 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 OMA:VIQWCTY
GeneTree:ENSGT00390000012652 HSSP:P34991 EMBL:Z81072 EMBL:Z81084
PIR:T21573 RefSeq:NP_492513.1 ProteinModelPortal:G5ECU1 SMR:G5ECU1
IntAct:G5ECU1 EnsemblMetazoa:F46A9.5.1 EnsemblMetazoa:F46A9.5.2
EnsemblMetazoa:F46A9.5.3 GeneID:172775 KEGG:cel:CELE_F46A9.5
CTD:172775 WormBase:F46A9.5 NextBio:876957 Uniprot:G5ECU1
Length = 176
Score = 112 (44.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +K L+D+T + +A +I+GK+PEEIR TF++ +D T EEE++ N +D
Sbjct: 124 LDIKGLLDVTCKTVANMIKGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 176
>UNIPROTKB|G5ECU1 [details] [associations]
symbol:skr-1 "Protein SKR-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0016246
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0040035
GO:GO:0006511 KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165
PIRSF:PIRSF028729 SUPFAM:SSF81382 OMA:VIQWCTY
GeneTree:ENSGT00390000012652 HSSP:P34991 EMBL:Z81072 EMBL:Z81084
PIR:T21573 RefSeq:NP_492513.1 ProteinModelPortal:G5ECU1 SMR:G5ECU1
IntAct:G5ECU1 EnsemblMetazoa:F46A9.5.1 EnsemblMetazoa:F46A9.5.2
EnsemblMetazoa:F46A9.5.3 GeneID:172775 KEGG:cel:CELE_F46A9.5
CTD:172775 WormBase:F46A9.5 NextBio:876957 Uniprot:G5ECU1
Length = 176
Score = 112 (44.5 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLNNVTDD 83
L +K L+D+T + +A +I+GK+PEEIR TF++ +D T EEE++ N +D
Sbjct: 124 LDIKGLLDVTCKTVANMIKGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 176
>FB|FBgn0025637 [details] [associations]
symbol:skpA "skpA" species:7227 "Drosophila melanogaster"
[GO:0045931 "positive regulation of mitotic cell cycle"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0042023
"DNA endoreduplication" evidence=IMP] [GO:0019005 "SCF ubiquitin
ligase complex" evidence=IDA;NAS] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0005819 "spindle"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0010824
"regulation of centrosome duplication" evidence=IMP] [GO:0007067
"mitosis" evidence=IMP] [GO:0031647 "regulation of protein
stability" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 GO:GO:0005813 GO:GO:0005875
GO:GO:0007095 GO:GO:0007067 GO:GO:0051298 GO:GO:0022008
GO:GO:0005819 GO:GO:0045931 EMBL:AE014298 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0031647 GO:GO:0006511
GO:GO:0019005 GO:GO:0030261 eggNOG:COG5201 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GO:GO:0042023 EMBL:AL031581 GO:GO:0010824
OMA:VIQWCTY GeneTree:ENSGT00390000012652 HSSP:P34991 EMBL:AF220066
EMBL:AY069297 EMBL:BT099582 EMBL:BT099610 PIR:T13390
RefSeq:NP_001033818.1 RefSeq:NP_477390.1 RefSeq:NP_726690.1
RefSeq:NP_726691.1 RefSeq:NP_726692.1 RefSeq:NP_726693.1
RefSeq:NP_726694.1 RefSeq:NP_726695.1 UniGene:Dm.7039 SMR:O77430
DIP:DIP-18869N IntAct:O77430 MINT:MINT-318247 STRING:O77430
EnsemblMetazoa:FBtr0070123 EnsemblMetazoa:FBtr0070124
EnsemblMetazoa:FBtr0070125 EnsemblMetazoa:FBtr0070126
EnsemblMetazoa:FBtr0070127 EnsemblMetazoa:FBtr0070128
EnsemblMetazoa:FBtr0070129 EnsemblMetazoa:FBtr0100530 GeneID:31016
KEGG:dme:Dmel_CG16983 UCSC:CG16983-RA CTD:31016 FlyBase:FBgn0025637
InParanoid:O77430 OrthoDB:EOG4BG7CC GenomeRNAi:31016 NextBio:771500
Uniprot:O77430
Length = 162
Score = 107 (42.7 bits), Expect = 0.00015, P = 0.00015
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT--EEEKLEPLN 78
L +K L++LT + +A +I+GKTPEEIR+TF++ D + EEE++ N
Sbjct: 109 LDIKGLLELTCKTVANMIKGKTPEEIRKTFNIKKDFSPAEEEQVRKEN 156
>FB|FBgn0026174 [details] [associations]
symbol:skpD "skpD" species:7227 "Drosophila melanogaster"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 HSSP:P34991 EMBL:AY070797 ProteinModelPortal:Q8T976
STRING:Q8T976 FlyBase:FBgn0026174 InParanoid:Q8T976
OrthoDB:EOG4K6DMM Bgee:Q8T976 Uniprot:Q8T976
Length = 182
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDL 68
L++K L DL + LA +I GKTPEEIR+TF++ DDL
Sbjct: 136 LEIKGLEDLCCKTLANMIRGKTPEEIRQTFNIEDDL 171
>TAIR|locus:2056956 [details] [associations]
symbol:SK14 "AT2G03170" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;TAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 UniPathway:UPA00143 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 HSSP:P63208
eggNOG:COG5201 HOGENOM:HOG000172184 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 EMBL:AC005313
EMBL:DQ056526 IPI:IPI00517714 PIR:T02709 RefSeq:NP_565296.1
UniGene:At.52615 ProteinModelPortal:O81057 SMR:O81057 IntAct:O81057
STRING:O81057 PaxDb:O81057 PRIDE:O81057 EnsemblPlants:AT2G03170.1
GeneID:814846 KEGG:ath:AT2G03170 TAIR:At2g03170 InParanoid:O81057
OMA:KTWDEEF PhylomeDB:O81057 ProtClustDB:CLSN2687939
Genevestigator:O81057 Uniprot:O81057
Length = 149
Score = 101 (40.6 bits), Expect = 0.00052, P = 0.00052
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+DL+++ +A I+ KTPEEIRE F++ +D T EE+
Sbjct: 97 LNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEE 137
>SGD|S000002736 [details] [associations]
symbol:SKP1 "Evolutionarily conserved kinetochore protein"
species:4932 "Saccharomyces cerevisiae" [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP]
[GO:0000921 "septin ring assembly" evidence=IMP] [GO:0000776
"kinetochore" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006461 "protein complex assembly" evidence=IDA]
[GO:0003688 "DNA replication origin binding" evidence=IPI]
[GO:0045116 "protein neddylation" evidence=IGI;IMP] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0031518 "CBF3 complex" evidence=IGI;IDA;IPI] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0031146
"SCF-dependent proteasomal ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0042787 "protein ubiquitination involved
in ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0043291 "RAVE complex" evidence=IPI] [GO:0051382 "kinetochore
assembly" evidence=IMP;IDA] [GO:0043254 "regulation of protein
complex assembly" evidence=IPI] [GO:0007035 "vacuolar
acidification" evidence=IGI;IMP] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0007096 "regulation of
exit from mitosis" evidence=IMP;IPI] [GO:0000910 "cytokinesis"
evidence=IMP] InterPro:IPR001232 InterPro:IPR016072
InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931 SMART:SM00512
UniPathway:UPA00143 SGD:S000002736 GO:GO:0005634 GO:GO:0005773
GO:GO:0000086 GO:GO:0000776 GO:GO:0000082 EMBL:BK006938
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0003688
GO:GO:0000910 GO:GO:0019005 GO:GO:0007096 GO:GO:0000921
GO:GO:0042787 GO:GO:0051382 eggNOG:COG5201 HOGENOM:HOG000172184
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 EMBL:U32517 GO:GO:0000777 GO:GO:0007035
GO:GO:0031518 GO:GO:0031146 PDB:1NEX PDB:3MKS PDB:3V7D PDBsum:1NEX
PDBsum:3MKS PDBsum:3V7D GO:GO:0045116 GO:GO:0043254
RefSeq:NP_010619.3 GeneID:851932 KEGG:sce:YDR332W
RefSeq:NP_010615.3 GeneID:851928 KEGG:sce:YDR328C GO:GO:0043291
GeneTree:ENSGT00390000012652 OrthoDB:EOG4T1MX2 EMBL:U43179
EMBL:U61764 EMBL:AY557730 PIR:S59793 ProteinModelPortal:P52286
SMR:P52286 DIP:DIP-1236N IntAct:P52286 MINT:MINT-384072
STRING:P52286 PaxDb:P52286 PeptideAtlas:P52286 PRIDE:P52286
EnsemblFungi:YDR328C OMA:PVEIANG EvolutionaryTrace:P52286
NextBio:969983 Genevestigator:P52286 GermOnline:YDR328C
Uniprot:P52286
Length = 194
Score = 106 (42.4 bits), Expect = 0.00060, P = 0.00060
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D + +A +I G++PEEIR TF++ +D T EE+
Sbjct: 141 LNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
>WB|WBGene00004808 [details] [associations]
symbol:skr-2 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0007126 "meiosis" evidence=IMP]
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IMP] [GO:0000239 "pachytene" evidence=IMP] [GO:0000132
"establishment of mitotic spindle orientation" evidence=IMP]
[GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 GO:GO:0008340 GO:GO:0009792
GO:GO:0000132 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008285 GO:GO:0008406 GO:GO:0002119 GO:GO:0040011
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0040035
GO:GO:0006511 GO:GO:0019005 GO:GO:0045132 KO:K03094
InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 OMA:IRRAFNI GO:GO:0000239
GeneTree:ENSGT00390000012652 HSSP:P34991 EMBL:Z81084 EMBL:AF440506
PIR:T22268 RefSeq:NP_492512.1 UniGene:Cel.193 SMR:G5EDD8
IntAct:G5EDD8 EnsemblMetazoa:F46A9.4 GeneID:172773
KEGG:cel:CELE_F46A9.4 CTD:172773 WormBase:F46A9.4 NextBio:876949
Uniprot:G5EDD8
Length = 174
Score = 104 (41.7 bits), Expect = 0.00066, P = 0.00066
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ +++A +I+GK+P+EIR F++ DD T EE+
Sbjct: 122 LDIKGLLDVACQSVANMIKGKSPDEIRRAFNIKDDFTAEER 162
>UNIPROTKB|G5EDD8 [details] [associations]
symbol:skr-2 "SKR-2" species:6239 "Caenorhabditis elegans"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001232
InterPro:IPR016072 InterPro:IPR016073 Pfam:PF01466 Pfam:PF03931
SMART:SM00512 GO:GO:0008340 GO:GO:0009792 GO:GO:0000132
GO:GO:0040007 GO:GO:0018991 GO:GO:0040010 GO:GO:0008285
GO:GO:0008406 GO:GO:0002119 GO:GO:0040011 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0040035 GO:GO:0006511
GO:GO:0019005 GO:GO:0045132 KO:K03094 InterPro:IPR016897
PANTHER:PTHR11165 PIRSF:PIRSF028729 SUPFAM:SSF81382 OMA:IRRAFNI
GO:GO:0000239 GeneTree:ENSGT00390000012652 HSSP:P34991 EMBL:Z81084
EMBL:AF440506 PIR:T22268 RefSeq:NP_492512.1 UniGene:Cel.193
SMR:G5EDD8 IntAct:G5EDD8 EnsemblMetazoa:F46A9.4 GeneID:172773
KEGG:cel:CELE_F46A9.4 CTD:172773 WormBase:F46A9.4 NextBio:876949
Uniprot:G5EDD8
Length = 174
Score = 104 (41.7 bits), Expect = 0.00066, P = 0.00066
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ +++A +I+GK+P+EIR F++ DD T EE+
Sbjct: 122 LDIKGLLDVACQSVANMIKGKSPDEIRRAFNIKDDFTAEER 162
>FB|FBgn0031074 [details] [associations]
symbol:skpE "skpE" species:7227 "Drosophila melanogaster"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001232 InterPro:IPR016072 InterPro:IPR016073
Pfam:PF01466 Pfam:PF03931 SMART:SM00512 GO:GO:0022008 EMBL:AE014298
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
KO:K03094 InterPro:IPR016897 PANTHER:PTHR11165 PIRSF:PIRSF028729
SUPFAM:SSF81382 GeneTree:ENSGT00390000012652 HSSP:P34991
OrthoDB:EOG4K6DMM EMBL:AY752578 EMBL:AY752581 RefSeq:NP_608359.1
UniGene:Dm.17269 SMR:Q9VWC3 IntAct:Q9VWC3 STRING:Q9VWC3
EnsemblMetazoa:FBtr0074806 GeneID:32997 KEGG:dme:Dmel_CG11942
UCSC:CG11942-RA CTD:32997 FlyBase:FBgn0031074 InParanoid:Q9VWC3
OMA:QNDENAI GenomeRNAi:32997 NextBio:781433 Uniprot:Q9VWC3
Length = 167
Score = 102 (41.0 bits), Expect = 0.00093, P = 0.00093
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
LQ+K L++LT +A +I GKTPEEIR F++P+D++
Sbjct: 112 LQIKGLLELTYNVVANMIRGKTPEEIRFIFNIPEDVS 148
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 277 236 0.00089 113 3 11 22 0.44 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 598 (64 KB)
Total size of DFA: 179 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.94u 0.09s 21.03t Elapsed: 00:00:01
Total cpu time: 20.95u 0.09s 21.04t Elapsed: 00:00:01
Start: Tue May 21 00:13:08 2013 End: Tue May 21 00:13:09 2013