BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023754
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LF97|ASK21_ARATH SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1
Length = 351
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/253 (62%), Positives = 184/253 (72%), Gaps = 9/253 (3%)
Query: 20 TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
T + +A SLQLKPLVDLTSRALARIIEGKTPEEIRE FHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160
Query: 80 VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
DDPRIRLLNRLYA+KRKELKEREKLK+VEV EEHVDERSVDDLLSFING D K +K
Sbjct: 161 TMDDPRIRLLNRLYAKKRKELKEREKLKSVEV-EEHVDERSVDDLLSFING--RDPKVVK 217
Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
T+K+KKKN++RK+Q SS K+ ++L S + + D S S L
Sbjct: 218 TSKSKKKNKKRKEQKNGSSNGTCEALEKDLHNLDSKSQSAEIVDNTASCLGDVSNLPSME 277
Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
+PK EF+DG IDD++DPA+KE LDREVEDFARRLNS W +LS+GQ+R+ V
Sbjct: 278 DDIFTPKTEFEDGYIDDEIDPALKELLDREVEDFARRLNSSW------VLSIGQERQPVN 331
Query: 260 VSMNGNCSSRRCT 272
S+NGN +SRR T
Sbjct: 332 FSINGNGTSRRLT 344
>sp|A8MQG7|ASK20_ARATH SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1
Length = 352
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/257 (57%), Positives = 177/257 (68%), Gaps = 15/257 (5%)
Query: 20 TAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79
T + +A SLQLKPLVDLTSRALARIIEGK PEEIRE FHLPDDLTEEEKLEPL N
Sbjct: 101 TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLTEEEKLEPLKN 160
Query: 80 VTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIK 139
DDPRIRLLNRLYA+KRKELKERE+LKNVEV EEHVDERSVDDLLSFING D K +K
Sbjct: 161 SMDDPRIRLLNRLYAKKRKELKERERLKNVEV-EEHVDERSVDDLLSFING--RDHKAVK 217
Query: 140 TNKNKKKNRRRKDQLKDSSTNNLNGNHKEFNSLHSAFHNGGLNDIAVSTPHKTSKLQCST 199
+K KKK +++KDQ SS N + + S G S+ + L +
Sbjct: 218 MSKGKKKKKKKKDQKIVSSNNIHDKESHDLRSKQQCVEEIG------SSMREVPNLLSAE 271
Query: 200 AVTCSPKMEFDDGEIDDDLDPAMKEELDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQ 259
+P +D +IDD++DPAM+E LDREVEDFA+RLNS+W + SLG++RR V
Sbjct: 272 DDISTPNAGSEDEDIDDEIDPAMRELLDREVEDFAQRLNSNW------VRSLGKERRPVH 325
Query: 260 VSMNGNCSSRRCTSLDS 276
S+NGN ++RR T + S
Sbjct: 326 FSINGNGTTRRHTGMVS 342
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1
SV=3
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2
SV=1
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1
PE=2 SV=1
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1
SV=2
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2
SV=1
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2
SV=2
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1
PE=2 SV=3
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1
SV=3
Length = 163
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+T + +A +I+GKTPEEIR+TF++ +D TEEE+
Sbjct: 110 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 150
>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1
Length = 152
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+DLT + +A +I+GKTPEEIR TF++ +D T EE+
Sbjct: 100 LNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEE 140
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium
discoideum GN=fpaA PE=1 SV=1
Length = 162
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D+T + +A +I GKTPEEIR+ F++ +D T EE+
Sbjct: 106 LDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEE 146
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium
discoideum GN=fpaB-1 PE=1 SV=1
Length = 162
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D+T + +A +I GKTPEEIR+ F++ +D T EE+
Sbjct: 106 LDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEE 146
>sp|Q9Y709|SKP1_SCHPO Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=skp1 PE=1 SV=1
Length = 161
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D + +A +I GK+PE+IR+TF++P+D T EE+
Sbjct: 108 LDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEE 148
>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1
Length = 152
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L DLT + +A +I+GKTPEEIR TF++ +D T EE+
Sbjct: 100 LNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEE 140
>sp|Q5BAX8|SKP1_EMENI E3 ubiquitin ligase complex SCF subunit sconC OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=sconC PE=3 SV=2
Length = 161
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 33/41 (80%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 108 LDIKPLLDIGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 148
>sp|Q8NK13|SKP1_NEUCR E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=scon-3 PE=1 SV=1
Length = 171
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 33/41 (80%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
+ +KPL+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 118 MDIKPLLDVGCKTVANMIKGKSPEEIRKTFNITNDFTPEEE 158
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1
Length = 153
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L DL + +A II+G TPE+IRE F++ +DLT EE+
Sbjct: 101 LNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEE 141
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1
Length = 171
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
L +K L+DLT + +A +I+GKTPEEIR+TF++ +D T
Sbjct: 119 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 155
>sp|P52286|SKP1_YEAST Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SKP1 PE=1 SV=2
Length = 194
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +KPL+D + +A +I G++PEEIR TF++ +D T EE+
Sbjct: 141 LNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEE 181
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1
Length = 160
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
L +K L+DLT + +A +I+GKTPEEIR TF++ +D T
Sbjct: 108 LNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFT 144
>sp|Q8TGW7|SKP1_ARTOT E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae
GN=sconC PE=2 SV=1
Length = 165
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 112 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 152
>sp|C5FHU9|SKP1_ARTOC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae
(strain ATCC MYA-4605 / CBS 113480) GN=sconC PE=3 SV=1
Length = 165
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 112 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 152
>sp|A1C9U5|SKP1_ASPCL E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=sconC PE=3 SV=1
Length = 159
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 107 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 147
>sp|B6QGB9|SKP1_PENMQ E3 ubiquitin ligase complex SCF subunit sconC OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=sconC PE=3 SV=1
Length = 160
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 107 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 147
>sp|A1CZG3|SKP1_NEOFI E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=sconC PE=3 SV=1
Length = 158
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 106 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 146
>sp|Q4WTT8|SKP1_ASPFU E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=sconC PE=3 SV=1
Length = 158
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 106 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 146
>sp|B0Y3B5|SKP1_ASPFC E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=sconC PE=3 SV=1
Length = 158
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 106 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 146
>sp|B8MDP8|SKP1_TALSN E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces
stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 /
NRRL 1006) GN=sconC PE=3 SV=1
Length = 160
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 107 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 147
>sp|D4ARL8|SKP1_ARTBC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma
benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconC
PE=3 SV=1
Length = 164
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 112 LDIKALLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 152
>sp|Q0CA59|SKP1_ASPTN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=sconC PE=3
SV=1
Length = 161
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 109 LDIKGLLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 149
>sp|Q5KU00|SKP1_ASPOR E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=sconC PE=3 SV=1
Length = 161
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 108 LDIKGLLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 148
>sp|B8NSJ0|SKP1_ASPFN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=sconC PE=3 SV=1
Length = 161
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+D+ + +A +I+GK+PEEIR+TF++ +D T EE+
Sbjct: 108 LDIKGLLDVGCKTVANMIKGKSPEEIRKTFNIQNDFTPEEE 148
>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1
Length = 149
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L +K L+DL+++ +A I+ KTPEEIRE F++ +D T EE+
Sbjct: 97 LNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEE 137
>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLN 78
L + L+DLT +A+A + GKTP ++RE F++ +D T EE+ E N
Sbjct: 111 LNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRN 156
>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1
Length = 163
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLN 78
L + L+DLT +A+A + GKTPE++R F++ +D T EE+ E N
Sbjct: 111 LNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRN 156
>sp|O81058|ASK19_ARATH SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=1 SV=1
Length = 200
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
L ++ L DL S+ +A I+ TPEE+RE F++ +D T EE+
Sbjct: 138 LNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEE 178
>sp|Q9M1X4|ASK5_ARATH SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1
Length = 153
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 33 LQLKPLVDLTSRAL-----ARIIEGKTPEEIRETFHLPDDLTEEE 72
L ++ L+DLT + + A ++ GKTP+EIR F++ +DLT EE
Sbjct: 96 LNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEE 140
>sp|Q8CGI1|F193A_MOUSE Protein FAM193A OS=Mus musculus GN=Fam193a PE=1 SV=2
Length = 1231
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 91 RLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIKTNKNKKKNRRR 150
RL KRKE ++ +K++ + E VD R V+DLL FIN + ++K + +++ K+ R +
Sbjct: 823 RLRLTKRKE-EQPKKMEQISEREGVVDHRRVEDLLQFIN--SSEAKPVSSSRAAKRARHK 879
Query: 151 KDQLKDSS 158
+ +L++ +
Sbjct: 880 QRKLEEKA 887
>sp|P78312|F193A_HUMAN Protein FAM193A OS=Homo sapiens GN=FAM193A PE=1 SV=2
Length = 1265
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 91 RLYARKRKELKEREKLKNVEVEEEHVDERSVDDLLSFINGGNGDSKGIKTNKNKKKNRRR 150
RL KRKE ++ +K+ + E VD R V+DLL FIN + ++K + + + K+ R +
Sbjct: 819 RLRLTKRKE-EQPKKMDQISERESVVDHRRVEDLLQFIN--SSETKPVSSTRAAKRARHK 875
Query: 151 KDQLKD 156
+ +L++
Sbjct: 876 QRKLEE 881
>sp|Q9LSY1|ASK8_ARATH SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1
Length = 152
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 36 KPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEK 73
K L+ L + +A +I+G TP+++RE F++ +DLT EE+
Sbjct: 103 KSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEE 140
>sp|Q1PEL7|ASK15_ARATH SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2
Length = 177
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
L ++ L+ LT + +A I+ KTPEE+RE F++ +D T
Sbjct: 114 LNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFT 150
>sp|Q9SY65|ASK18_ARATH SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2
Length = 158
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
L + L+ S+ +A I+ KTPEE+RE F++ +D T
Sbjct: 105 LNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFT 141
>sp|P16154|TOXA_CLODI Toxin A OS=Clostridium difficile GN=toxA PE=1 SV=2
Length = 2710
Score = 33.9 bits (76), Expect = 1.4, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 72 EKLEPLNNVTDDPRIRLLNR--LYARKRKELKEREKLKNVE----VEEEHVDERSVDDLL 125
EKLEP+ N+ + L++ L EL E +KL N++ + E + + + +
Sbjct: 841 EKLEPVKNIIHNSIDDLIDEFNLLENVSDELYELKKLNNLDEKYLISFEDISKNNSTYSV 900
Query: 126 SFINGGNGDSKGIKTNKN-----KKKNRRRKDQLKDSSTNNLNGN---------HKEFNS 171
FIN NG+S ++T K + + +K+S ++NGN + N+
Sbjct: 901 RFINKSNGESVYVETEKEIFSKYSEHITKEISTIKNSIITDVNGNLLDNIQLDHTSQVNT 960
Query: 172 LHSAF 176
L++AF
Sbjct: 961 LNAAF 965
>sp|A6KZJ2|MIAB_BACV8 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=miaB PE=3 SV=1
Length = 456
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 63 HLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKEREKLKNVEVEEEHVDERSVD 122
HLPDD+ EE K+ LN + I L NRL A E R+ K EV E V +RS +
Sbjct: 363 HLPDDVPEEVKIRRLNEI-----IELQNRLSA----ESNARDVGKTFEVMVEGVSKRSRE 413
Query: 123 DLL 125
L
Sbjct: 414 QLF 416
>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1
Length = 154
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 33 LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 69
L +K L+DL + +A +I GK P+EIR + +D T
Sbjct: 102 LNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFT 138
>sp|A4QJQ8|YCF1_AETGR Putative membrane protein ycf1 OS=Aethionema grandiflora GN=ycf1-A
PE=3 SV=1
Length = 1791
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 42 TSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELK 101
+S+ +I++ K IR+TF+ E+ L + + PRI + +L K+++
Sbjct: 1066 SSKKKWQIVKSKNTRLIRKTFYFVKFCIEQLSLGIFGGIINIPRI--ITQLLFESTKQIR 1123
Query: 102 EREKLKNVEVEEEHVDERSVDDLLS 126
++ KN E +E+ +++ L+S
Sbjct: 1124 DKSIYKNEETQEKINKKKNTIYLIS 1148
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,758,909
Number of Sequences: 539616
Number of extensions: 4807924
Number of successful extensions: 37395
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 27415
Number of HSP's gapped (non-prelim): 7405
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)